BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036801
MTCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDR
NNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTK
KVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKV
LQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN
LVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH
DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELST
PMLHKVQLNMWDEACWAWKEGLNTTIEQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G14460 protein from Arabidopsis thaliana 0.00011

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036801
        (388 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2091662 - symbol:AT3G14460 species:3702 "Arabi...    93  0.00011   3


>TAIR|locus:2091662 [details] [associations]
            symbol:AT3G14460 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006952 "defense response"
            evidence=IEA;ISS] [GO:0043531 "ADP binding" evidence=IEA]
            Pfam:PF00560 InterPro:IPR001611 InterPro:IPR000767
            InterPro:IPR002182 Pfam:PF00931 PRINTS:PR00364 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006952 GO:GO:0043531
            InterPro:IPR025875 Pfam:PF12799 EMBL:AB028617 IPI:IPI00537428
            RefSeq:NP_188064.1 UniGene:At.65087 ProteinModelPortal:Q9LRR5
            SMR:Q9LRR5 PRIDE:Q9LRR5 EnsemblPlants:AT3G14460.1 GeneID:820669
            KEGG:ath:AT3G14460 TAIR:At3g14460 eggNOG:NOG295903
            HOGENOM:HOG000238375 InParanoid:Q9LRR5 OMA:AVISARY PhylomeDB:Q9LRR5
            ProtClustDB:CLSN2684935 Genevestigator:Q9LRR5 GermOnline:AT3G14460
            Uniprot:Q9LRR5
        Length = 1424

 Score = 93 (37.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query:    36 LQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPS 95
             L+Y+ IEK ++L+++ +     E+ +  V F  LQ LK Y + +   +   ++    FP 
Sbjct:   809 LKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGIFPC 868

Query:    96 LKELWISRCPGFMVKF 111
             L++L I RCP    KF
Sbjct:   869 LQKLIIQRCPSLRKKF 884

 Score = 68 (29.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query:   338 SLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369
             +LE L + DC N+E F +G L TP L  + L+
Sbjct:  1216 ALESLEIRDCPNLETFPQGGLPTPKLSSMLLS 1247

 Score = 58 (25.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query:   230 LRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285
             L+V+   HL+ L P     QNL +L I  C+GL + L   + ++   L E+ I +C
Sbjct:  1078 LKVTDISHLMEL-P-----QNLQSLHIDSCDGLTS-LPENLTESYPNLHELLIIAC 1126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      388       334   0.00091  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  242 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.64u 0.14s 25.78t   Elapsed:  00:00:01
  Total cpu time:  25.64u 0.14s 25.78t   Elapsed:  00:00:01
  Start:  Fri May 10 07:17:58 2013   End:  Fri May 10 07:17:59 2013

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