Query 036801
Match_columns 388
No_of_seqs 141 out of 1929
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 3.6E-20 7.8E-25 197.4 18.6 282 33-368 610-900 (1153)
2 PLN03210 Resistant to P. syrin 99.8 3.7E-20 7.9E-25 197.3 16.5 293 5-354 610-910 (1153)
3 PLN00113 leucine-rich repeat r 99.8 8.3E-20 1.8E-24 193.5 15.4 329 4-370 91-437 (968)
4 PLN00113 leucine-rich repeat r 99.8 2.3E-19 5E-24 190.1 14.8 330 3-370 137-484 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.8E-19 6.1E-24 166.6 4.8 327 9-369 81-447 (873)
6 KOG4194 Membrane glycoprotein 99.7 7.4E-19 1.6E-23 163.9 3.3 300 35-369 79-424 (873)
7 KOG0444 Cytoskeletal regulator 99.6 4.4E-18 9.4E-23 160.0 -5.4 326 3-369 4-370 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 7.8E-18 1.7E-22 158.3 -5.7 308 3-354 52-379 (1255)
9 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.5E-17 131.6 12.5 252 7-369 202-453 (788)
10 KOG0472 Leucine-rich repeat pr 99.4 1.6E-15 3.4E-20 136.1 -7.5 47 322-370 491-537 (565)
11 KOG4341 F-box protein containi 99.4 2.6E-15 5.6E-20 135.4 -6.6 262 65-369 162-434 (483)
12 KOG4341 F-box protein containi 99.3 2.6E-14 5.6E-19 129.0 -8.1 313 7-366 139-457 (483)
13 PRK15387 E3 ubiquitin-protein 99.3 4.2E-11 9.2E-16 120.5 12.1 235 6-348 222-456 (788)
14 KOG4658 Apoptotic ATPase [Sign 99.2 5E-12 1.1E-16 129.5 4.6 131 219-356 711-848 (889)
15 PRK15370 E3 ubiquitin-protein 99.2 1.5E-11 3.4E-16 124.1 7.6 100 225-348 325-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.2 2.2E-11 4.8E-16 123.0 8.7 225 6-291 178-403 (754)
17 KOG0618 Serine/threonine phosp 99.2 1.7E-12 3.6E-17 127.9 -0.5 240 93-376 240-488 (1081)
18 KOG0472 Leucine-rich repeat pr 99.2 6.2E-14 1.3E-18 126.0 -11.9 240 63-369 64-305 (565)
19 KOG0618 Serine/threonine phosp 99.2 9.1E-13 2E-17 129.7 -5.2 131 148-323 358-488 (1081)
20 KOG0617 Ras suppressor protein 99.1 1.2E-12 2.7E-17 104.7 -3.8 153 4-188 31-185 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.0 1.2E-10 2.6E-15 119.5 4.1 118 225-356 747-866 (889)
22 KOG4237 Extracellular matrix p 99.0 2.7E-11 5.8E-16 109.0 -2.7 225 7-258 68-355 (498)
23 cd00116 LRR_RI Leucine-rich re 98.9 3.9E-10 8.3E-15 104.5 -0.0 94 32-136 21-120 (319)
24 KOG0617 Ras suppressor protein 98.7 2.8E-10 6.2E-15 91.3 -5.8 39 219-258 144-182 (264)
25 KOG4237 Extracellular matrix p 98.7 1.5E-09 3.3E-14 97.9 -2.3 251 68-378 68-360 (498)
26 KOG3207 Beta-tubulin folding c 98.6 5.4E-09 1.2E-13 95.6 -0.1 160 4-183 119-278 (505)
27 cd00116 LRR_RI Leucine-rich re 98.6 2.5E-09 5.5E-14 99.0 -2.9 146 4-160 21-176 (319)
28 KOG3207 Beta-tubulin folding c 98.5 9.9E-09 2.2E-13 93.9 -0.9 210 31-282 118-333 (505)
29 PF14580 LRR_9: Leucine-rich r 98.5 1.3E-07 2.7E-12 78.6 4.0 130 32-183 17-147 (175)
30 PF14580 LRR_9: Leucine-rich r 98.4 9.3E-08 2E-12 79.4 2.0 134 4-161 17-152 (175)
31 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.5E-13 89.2 -6.2 187 124-349 185-375 (419)
32 KOG2120 SCF ubiquitin ligase, 98.1 2.5E-08 5.4E-13 87.1 -7.6 184 35-259 186-373 (419)
33 PF13855 LRR_8: Leucine rich r 98.1 5.8E-06 1.3E-10 56.1 5.1 37 65-104 23-59 (61)
34 PF13855 LRR_8: Leucine rich r 98.1 5.9E-06 1.3E-10 56.1 4.9 59 6-77 1-59 (61)
35 COG4886 Leucine-rich repeat (L 98.0 7.4E-06 1.6E-10 78.3 4.8 171 32-259 114-287 (394)
36 KOG1947 Leucine rich repeat pr 97.9 7.3E-07 1.6E-11 87.4 -3.0 139 32-183 186-328 (482)
37 KOG1947 Leucine rich repeat pr 97.9 5.3E-07 1.2E-11 88.3 -4.1 120 65-188 186-308 (482)
38 KOG1259 Nischarin, modulator o 97.8 4.5E-06 9.7E-11 73.3 0.5 101 148-284 283-383 (490)
39 PRK15386 type III secretion pr 97.7 8.9E-05 1.9E-09 69.4 7.5 57 225-289 52-108 (426)
40 COG4886 Leucine-rich repeat (L 97.7 2.4E-05 5.2E-10 74.7 4.0 178 4-240 114-292 (394)
41 KOG0532 Leucine-rich repeat (L 97.7 1.9E-06 4.2E-11 81.7 -4.2 132 24-188 114-246 (722)
42 KOG0532 Leucine-rich repeat (L 97.7 4.2E-06 9.1E-11 79.5 -2.0 175 24-259 91-270 (722)
43 PRK15386 type III secretion pr 97.5 0.00019 4.1E-09 67.3 5.8 72 4-103 50-121 (426)
44 KOG3665 ZYG-1-like serine/thre 97.4 2.5E-05 5.5E-10 78.9 -1.2 156 6-183 122-282 (699)
45 PLN03150 hypothetical protein; 97.2 0.00043 9.2E-09 70.0 5.3 103 36-160 420-526 (623)
46 KOG1259 Nischarin, modulator o 97.1 0.00024 5.2E-09 62.7 2.3 108 221-348 303-410 (490)
47 KOG1909 Ran GTPase-activating 97.1 3.6E-05 7.8E-10 69.1 -2.9 257 3-286 27-309 (382)
48 KOG1909 Ran GTPase-activating 97.0 7E-05 1.5E-09 67.3 -2.4 259 32-348 28-309 (382)
49 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.3E-08 41.5 2.8 39 6-50 1-39 (44)
50 KOG2982 Uncharacterized conser 96.7 0.00022 4.7E-09 62.9 -1.5 86 92-184 69-154 (418)
51 KOG3665 ZYG-1-like serine/thre 96.7 0.00063 1.4E-08 69.0 1.4 35 148-183 121-155 (699)
52 PLN03150 hypothetical protein; 96.6 0.004 8.7E-08 63.0 6.6 63 221-285 438-500 (623)
53 KOG1859 Leucine-rich repeat pr 96.6 7E-05 1.5E-09 73.5 -6.2 38 5-45 83-120 (1096)
54 PF12799 LRR_4: Leucine Rich r 96.3 0.0052 1.1E-07 38.4 3.4 40 225-266 1-40 (44)
55 KOG2982 Uncharacterized conser 96.3 0.001 2.2E-08 58.8 -0.1 65 65-136 69-133 (418)
56 KOG0531 Protein phosphatase 1, 96.3 0.00091 2E-08 64.3 -0.5 106 63-188 91-198 (414)
57 KOG1859 Leucine-rich repeat pr 96.2 0.00028 6.1E-09 69.4 -4.2 106 33-161 186-291 (1096)
58 KOG0531 Protein phosphatase 1, 95.9 0.0014 2.9E-08 63.1 -1.4 102 32-160 93-197 (414)
59 KOG1644 U2-associated snRNP A' 95.8 0.01 2.2E-07 49.8 3.6 107 7-133 43-149 (233)
60 KOG1644 U2-associated snRNP A' 95.7 0.018 4E-07 48.2 4.7 37 65-104 62-98 (233)
61 KOG3864 Uncharacterized conser 95.6 0.00096 2.1E-08 55.7 -3.0 84 35-133 102-185 (221)
62 KOG2123 Uncharacterized conser 95.5 0.00044 9.5E-09 60.5 -5.7 81 32-133 17-97 (388)
63 KOG3864 Uncharacterized conser 95.3 0.0017 3.8E-08 54.2 -2.4 87 226-323 102-188 (221)
64 PF13306 LRR_5: Leucine rich r 95.0 0.17 3.6E-06 39.6 8.1 81 32-133 10-90 (129)
65 KOG2739 Leucine-rich acidic nu 94.7 0.01 2.2E-07 51.6 0.4 113 32-163 41-157 (260)
66 KOG2739 Leucine-rich acidic nu 94.6 0.024 5.1E-07 49.5 2.4 107 65-183 41-150 (260)
67 PF13306 LRR_5: Leucine rich r 94.5 0.24 5.3E-06 38.6 8.0 105 2-133 8-112 (129)
68 KOG2123 Uncharacterized conser 93.3 0.0073 1.6E-07 53.1 -3.0 106 5-130 18-123 (388)
69 KOG4579 Leucine-rich repeat (L 91.4 0.01 2.2E-07 46.7 -4.1 12 148-159 99-110 (177)
70 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.9E-06 24.7 1.2 17 337-354 1-17 (17)
71 PF00560 LRR_1: Leucine Rich R 90.5 0.18 3.9E-06 26.0 1.4 19 338-357 1-19 (22)
72 KOG4579 Leucine-rich repeat (L 87.2 0.052 1.1E-06 42.8 -3.0 107 8-136 29-135 (177)
73 COG5238 RNA1 Ran GTPase-activa 87.0 0.12 2.6E-06 45.5 -1.2 205 5-236 29-253 (388)
74 COG5238 RNA1 Ran GTPase-activa 83.0 0.27 6E-06 43.4 -0.8 261 32-346 28-312 (388)
75 smart00367 LRR_CC Leucine-rich 82.5 0.78 1.7E-05 24.7 1.2 16 93-108 1-16 (26)
76 smart00370 LRR Leucine-rich re 69.6 3.4 7.3E-05 22.0 1.4 13 124-136 2-14 (26)
77 smart00369 LRR_TYP Leucine-ric 69.6 3.4 7.3E-05 22.0 1.4 13 124-136 2-14 (26)
78 PF13516 LRR_6: Leucine Rich r 59.6 2 4.2E-05 22.5 -0.7 12 6-17 2-13 (24)
79 smart00365 LRR_SD22 Leucine-ri 37.3 27 0.00057 18.9 1.5 11 34-44 2-12 (26)
80 smart00364 LRR_BAC Leucine-ric 34.4 26 0.00057 18.9 1.1 18 337-355 2-19 (26)
81 KOG3763 mRNA export factor TAP 26.1 21 0.00045 35.2 -0.2 86 4-100 216-307 (585)
82 smart00368 LRR_RI Leucine rich 22.7 48 0.001 18.0 0.9 11 34-44 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=3.6e-20 Score=197.35 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=175.6
Q ss_pred ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801 33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK 112 (388)
Q Consensus 33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 112 (388)
..+|++|++.++ .++.++.+ +..+++|+.|++.++..+..++. ...+++|+.|++.+|..+..+|.
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~---------~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDG---------VHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred ccCCcEEECcCc-cccccccc---------cccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccch
Confidence 456677777666 45555444 55688888888887766666653 34678889999988888887776
Q ss_pred cccCCccccccCCccEEEEeecCccccccccchh-hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801 113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD-LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP 191 (388)
Q Consensus 113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 191 (388)
.. ..+++|+.|++++|..+ ..+|.+ .+++|+.|++++|..+. .+|. ..++|+.|++.++.+
T Consensus 676 si------~~L~~L~~L~L~~c~~L---~~Lp~~i~l~sL~~L~Lsgc~~L~--~~p~----~~~nL~~L~L~~n~i--- 737 (1153)
T PLN03210 676 SI------QYLNKLEDLDMSRCENL---EILPTGINLKSLYRLNLSGCSRLK--SFPD----ISTNISWLDLDETAI--- 737 (1153)
T ss_pred hh------hccCCCCEEeCCCCCCc---CccCCcCCCCCCCEEeCCCCCCcc--cccc----ccCCcCeeecCCCcc---
Confidence 65 57888888988887654 455654 47788888888887665 2332 246788888855566
Q ss_pred ceeecCcc-ccccceeeeee-ccceecc----c--cCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCce
Q 036801 192 KEKVENGV-EVIIREAYNCY-DMKYILK----H--ESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLK 263 (388)
Q Consensus 192 ~~~~~~~~-~~~L~~~~l~l-~l~~i~~----~--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 263 (388)
..+|... ..+|....++- ....++. . ......++|+.|++++|..+..+|..+..+++|+.|++++|+++.
T Consensus 738 -~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 -EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred -ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 3344221 22333211111 1111110 0 111234789999999998888888888899999999999999998
Q ss_pred eecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEe
Q 036801 264 NVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLL 343 (388)
Q Consensus 264 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 343 (388)
.+|... .+++|++|++++|..+..+... .++|+.|++.+. .++.+|... ..+++|+.|+
T Consensus 817 ~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~---------------~~nL~~L~Ls~n-~i~~iP~si--~~l~~L~~L~ 875 (1153)
T PLN03210 817 TLPTGI---NLESLESLDLSGCSRLRTFPDI---------------STNISDLNLSRT-GIEEVPWWI--EKFSNLSFLD 875 (1153)
T ss_pred eeCCCC---CccccCEEECCCCCcccccccc---------------ccccCEeECCCC-CCccChHHH--hcCCCCCEEE
Confidence 887642 6789999999999877655321 134444444442 344444332 3444444444
Q ss_pred ccCCcccccCCCCCcCCCCcceEEE
Q 036801 344 VDDCTNMEIFSRGELSTPMLHKVQL 368 (388)
Q Consensus 344 l~~c~~l~~l~~~~~~~~~L~~l~l 368 (388)
+.+|++++.+|.....++.|+.+++
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeec
Confidence 4444444444443333334433333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=3.7e-20 Score=197.29 Aligned_cols=293 Identities=18% Similarity=0.248 Sum_probs=170.1
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
..+|+.|++.++. +..+ |..+. .+++|+.|++++|..+..++. +..+++|+.|++.+|..+..++
T Consensus 610 ~~~L~~L~L~~s~-l~~L-~~~~~---~l~~Lk~L~Ls~~~~l~~ip~----------ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKL-WDGVH---SLTGLRNIDLRGSKNLKEIPD----------LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred ccCCcEEECcCcc-cccc-ccccc---cCCCCCEEECCCCCCcCcCCc----------cccCCcccEEEecCCCCccccc
Confidence 3567777776643 4443 44444 567777777776655555443 3356667777776666666555
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
.. +..+++|+.|++++|..++.+|... .+++|+.|++++|..+ ..+|. ..++|+.|+++++....
T Consensus 675 ~s---i~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~~L---~~~p~-~~~nL~~L~L~~n~i~~- 739 (1153)
T PLN03210 675 SS---IQYLNKLEDLDMSRCENLEILPTGI-------NLKSLYRLNLSGCSRL---KSFPD-ISTNISWLDLDETAIEE- 739 (1153)
T ss_pred hh---hhccCCCCEEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCCCc---ccccc-ccCCcCeeecCCCcccc-
Confidence 44 4556677777777766666555432 4566666666665432 22221 23456666665544211
Q ss_pred cccchhHhhcCCCccEEEE-EeccC--CCCceeec---Cccccccceeeeee--ccceeccccCCCCCCccceEEecCCc
Q 036801 165 ILSLDDFLQRFHTLKVLQI-EGYNY--WLPKEKVE---NGVEVIIREAYNCY--DMKYILKHESSSIMDNLVILRVSSCH 236 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l-~~~~l--~~~~~~~~---~~~~~~L~~~~l~l--~l~~i~~~~~l~~l~~L~~L~l~~c~ 236 (388)
+|.. + .+++|+.|.+ .+... +.....++ ....++|+...+.- .+..+| ..++.+++|+.|++.+|.
T Consensus 740 --lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 740 --FPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred --cccc-c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCC
Confidence 3321 1 3455555555 22110 00000000 00111222111111 122232 456678889999999998
Q ss_pred cccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccccccee
Q 036801 237 HLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNEL 316 (388)
Q Consensus 237 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L 316 (388)
.++.+|... .+++|+.|++++|..+..++. ...+|+.|++.+ +.+++++.. ...+++|+.|
T Consensus 814 ~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~iP~s------------i~~l~~L~~L 874 (1153)
T PLN03210 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEEVPWW------------IEKFSNLSFL 874 (1153)
T ss_pred CcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCccChHH------------HhcCCCCCEE
Confidence 888887655 678899999998888776654 236788888855 345544322 2246788888
Q ss_pred ecccccccceeccCcccccCCCcceEeccCCcccccCC
Q 036801 317 RLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS 354 (388)
Q Consensus 317 ~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (388)
++.+|++++.++... ..+++|+.+++.+|++++.++
T Consensus 875 ~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 875 DMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence 888888888887765 677888888888888776543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=8.3e-20 Score=193.46 Aligned_cols=329 Identities=14% Similarity=0.084 Sum_probs=147.3
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+++|++|++++|.....+ |..+.. .+++|++|++++|.-...++. ..+++|++|++.++ .+...
T Consensus 91 ~l~~L~~L~Ls~n~~~~~i-p~~~~~--~l~~L~~L~Ls~n~l~~~~p~-----------~~l~~L~~L~Ls~n-~~~~~ 155 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPI-PDDIFT--TSSSLRYLNLSNNNFTGSIPR-----------GSIPNLETLDLSNN-MLSGE 155 (968)
T ss_pred CCCCCCEEECCCCccCCcC-ChHHhc--cCCCCCEEECcCCccccccCc-----------cccCCCCEEECcCC-ccccc
Confidence 3455555555554322222 322221 455555555555522111111 23555666666543 33322
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDE 161 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~ 161 (388)
.+.. ++.+++|++|++++|.....+|... ..+++|++|++++|.+. ..+|. +.+++|+.|+++++..
T Consensus 156 ~p~~--~~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 156 IPND--IGSFSSLKVLDLGGNVLVGKIPNSL------TNLTSLEFLTLASNQLV---GQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred CChH--HhcCCCCCEEECccCcccccCChhh------hhCcCCCeeeccCCCCc---CcCChHHcCcCCccEEECcCCcc
Confidence 2222 4456666666666653222233222 35566666666665542 22232 2355666666665532
Q ss_pred ccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCcc
Q 036801 162 LTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHH 237 (388)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~ 237 (388)
.. ..|. .+..+++|+.|++..+.+ ...+|.. +.++.+ +.+.+ .+.+..+ ..+..+++|+.|++++|..
T Consensus 225 ~~--~~p~-~l~~l~~L~~L~L~~n~l---~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 225 SG--EIPY-EIGGLTSLNHLDLVYNNL---TGPIPSS-LGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CC--cCCh-hHhcCCCCCEEECcCcee---ccccChh-HhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCee
Confidence 21 2222 455566666666633333 2223321 111222 12222 2222222 3444555666666665544
Q ss_pred ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-----------C-cccccc
Q 036801 238 LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD-----------D-HDAAKD 305 (388)
Q Consensus 238 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~-----------~-~~~~~~ 305 (388)
...+|..+..+++|+.|+++++......+. ....+++|+.|++.++.-...+....... . ......
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 344444455556666666655432222222 22345566666665443211111000000 0 000000
Q ss_pred ceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 306 EVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
....+++|+.|++.++.-...++... ..+++|+.|++.+|.--..+|..+..++.|+.++++.
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 01123445555555443222333322 4567777777777655455666666777888887763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=2.3e-19 Score=190.08 Aligned_cols=330 Identities=15% Similarity=0.067 Sum_probs=180.8
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+.+++|++|++++|. +....|..++ .+++|++|++++|.-...++.. +..+++|++|++.++ .+..
T Consensus 137 ~~l~~L~~L~Ls~n~-~~~~~p~~~~---~l~~L~~L~L~~n~l~~~~p~~---------~~~l~~L~~L~L~~n-~l~~ 202 (968)
T PLN00113 137 GSIPNLETLDLSNNM-LSGEIPNDIG---SFSSLKVLDLGGNVLVGKIPNS---------LTNLTSLEFLTLASN-QLVG 202 (968)
T ss_pred cccCCCCEEECcCCc-ccccCChHHh---cCCCCCEEECccCcccccCChh---------hhhCcCCCeeeccCC-CCcC
Confidence 357889999999865 4444577788 7999999999988533444443 567888888888775 3443
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVD 160 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~ 160 (388)
..+.. +..+++|+.|++++|.....+|... ..+++|++|++++|.+. ..+|. +.+++|+.|+++.+.
T Consensus 203 ~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 203 QIPRE--LGQMKSLKWIYLGYNNLSGEIPYEI------GGLTSLNHLDLVYNNLT---GPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred cCChH--HcCcCCccEEECcCCccCCcCChhH------hcCCCCCEEECcCceec---cccChhHhCCCCCCEEECcCCe
Confidence 33332 5667888888888774333344333 46778888888777652 22332 346777777777764
Q ss_pred cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCc
Q 036801 161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCH 236 (388)
Q Consensus 161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~ 236 (388)
... ..|. .+..+++|+.|++..+.+ ...+|..+ .++.+ ..+.+ .+.+..+ ..+..+++|+.|++.+|.
T Consensus 272 l~~--~~p~-~l~~l~~L~~L~Ls~n~l---~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 272 LSG--PIPP-SIFSLQKLISLDLSDNSL---SGEIPELV-IQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNK 343 (968)
T ss_pred eec--cCch-hHhhccCcCEEECcCCee---ccCCChhH-cCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCC
Confidence 332 2333 456677777777744444 33333221 12222 22322 2332223 445566777777777765
Q ss_pred cccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC------------Cccccc
Q 036801 237 HLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAAK 304 (388)
Q Consensus 237 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~------------~~~~~~ 304 (388)
....+|..+..+++|+.|+++++.....++. ..+.+++|+.|++.++.-...+....... ......
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCCh--hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 5555555566666777777765432222222 12334555555554332111111000000 000000
Q ss_pred cceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 305 DEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
.....++.|+.|+++++.-...++... ..+++|+.|++.+|.....+|... ..++|+.++++.
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~ 484 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR 484 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence 112234566666666653222333322 356777777777776555555543 346777777763
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-19 Score=166.63 Aligned_cols=327 Identities=16% Similarity=0.137 Sum_probs=161.4
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccc---------------cccccccccccccceEe
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQ---------------EEDRNNIVIFPRLQYLK 73 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~L~~L~ 73 (388)
+.|++++ +.+...-+..|. ++++|+.+.+.+| .++.+|....- ......+..++.|++|+
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f~---nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFFY---NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeeccc-cccccCcHHHHh---cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3455554 334444344344 5555666655555 34444443110 00111244567777777
Q ss_pred cccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh---ccC
Q 036801 74 MYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL---LCK 150 (388)
Q Consensus 74 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~---l~~ 150 (388)
++. +.+..++... +-.-+++++|+++++ .++.+....| ..+.+|..|.+++|.+ ..+|... +++
T Consensus 156 LSr-N~is~i~~~s--fp~~~ni~~L~La~N-~It~l~~~~F-----~~lnsL~tlkLsrNri----ttLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 156 LSR-NLISEIPKPS--FPAKVNIKKLNLASN-RITTLETGHF-----DSLNSLLTLKLSRNRI----TTLPQRSFKRLPK 222 (873)
T ss_pred hhh-chhhcccCCC--CCCCCCceEEeeccc-cccccccccc-----cccchheeeecccCcc----cccCHHHhhhcch
Confidence 765 4565555443 333355777777766 5555555555 4566777777777766 4555543 557
Q ss_pred ccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCc
Q 036801 151 LKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDN 226 (388)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~ 226 (388)
|+.|++..+.... ...-.+.++++|+.|.+..|.+ ..+.+|.|..+.+ ..+.+ .+..+.. +++=++++
T Consensus 223 L~~LdLnrN~iri---ve~ltFqgL~Sl~nlklqrN~I----~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~ 294 (873)
T KOG4194|consen 223 LESLDLNRNRIRI---VEGLTFQGLPSLQNLKLQRNDI----SKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTS 294 (873)
T ss_pred hhhhhccccceee---ehhhhhcCchhhhhhhhhhcCc----ccccCcceeeecccceeecccchhhhhhc-ccccccch
Confidence 7777777655433 2223566777777777755555 4455666654444 23333 4444443 44445666
Q ss_pred cceEEecCCcccccc-CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-------
Q 036801 227 LVILRVSSCHHLINL-VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD------- 298 (388)
Q Consensus 227 L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~------- 298 (388)
|++|+++.+. +..+ +.....+++|+.|+++. +.+..+++..+ ..+..|++|.++. +.+..+....-..
T Consensus 295 L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 295 LEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred hhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHH-HHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhh
Confidence 6666666552 2222 22334455666666663 35555554432 2344444444422 2222221100000
Q ss_pred ---------CccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEE
Q 036801 299 ---------DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQL 368 (388)
Q Consensus 299 ---------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l 368 (388)
-++-+...+..+++|+.|.+.+ .+++.++... +..++.|++|++.+. -+.++-.. +..+ .|+++.+
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence 0000000022356666666655 3566666543 345666666666653 33333222 2223 5555554
Q ss_pred e
Q 036801 369 N 369 (388)
Q Consensus 369 ~ 369 (388)
.
T Consensus 447 n 447 (873)
T KOG4194|consen 447 N 447 (873)
T ss_pred c
Confidence 4
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=7.4e-19 Score=163.87 Aligned_cols=300 Identities=15% Similarity=0.114 Sum_probs=170.4
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCC---------
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCP--------- 105 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~--------- 105 (388)
.-+.|++++| ++..+...+ +..+++|+.+++.. +.+..+|.. .....+|+.|++.++.
T Consensus 79 ~t~~LdlsnN-kl~~id~~~--------f~nl~nLq~v~l~~-N~Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEF--------FYNLPNLQEVNLNK-NELTRIPRF---GHESGHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred ceeeeecccc-ccccCcHHH--------HhcCCcceeeeecc-chhhhcccc---cccccceeEEeeeccccccccHHHH
Confidence 4567999998 566654442 45678888887765 456665544 2334446666665541
Q ss_pred --------------CceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeeccccccccccccc
Q 036801 106 --------------GFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDELTTILSL 168 (388)
Q Consensus 106 --------------~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~~~~~~~~ 168 (388)
.+.+++...+ ..-.++++|++.+|.+ ..+..+ .+.+|..|.++.++. +.+|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sf-----p~~~ni~~L~La~N~I----t~l~~~~F~~lnsL~tlkLsrNri---ttLp 213 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSF-----PAKVNIKKLNLASNRI----TTLETGHFDSLNSLLTLKLSRNRI---TTLP 213 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCC-----CCCCCceEEeeccccc----cccccccccccchheeeecccCcc---cccC
Confidence 3333333322 2334556666655554 233332 244566666665543 2366
Q ss_pred hhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCccccccC-C
Q 036801 169 DDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLV-P 243 (388)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~-~ 243 (388)
...++++++|+.|++..|.+ ++...-.|..|.+ +.+.+ +...+.+ ..+-.+.++++|++..+ .+..+. .
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~i----rive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N-~l~~vn~g 287 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRI----RIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETN-RLQAVNEG 287 (873)
T ss_pred HHHhhhcchhhhhhccccce----eeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecccc-hhhhhhcc
Confidence 66777788888888755666 4443333333333 23333 4444444 55667788888888776 344332 4
Q ss_pred CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC------------CCcccccc-ceecc
Q 036801 244 SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD------------DDHDAAKD-EVIAF 310 (388)
Q Consensus 244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~------------~~~~~~~~-~~~~~ 310 (388)
|+.+++.|+.|++++ +.+..+....| ...++|++|++++ +.++++....-. ..+.+..+ .+..+
T Consensus 288 ~lfgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred cccccchhhhhccch-hhhheeecchh-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 678899999999986 46766655545 3678999999954 456554221100 00000001 12345
Q ss_pred cccceeecccccccceecc-CcccccCCCcceEeccCCcccccCCCCC-cCCCCcceEEEe
Q 036801 311 SKLNELRLLNLESLRSFYS-GYCALNFPSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLN 369 (388)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~ 369 (388)
++|+.|++++..---.+.. ...+..+++|++|++.+ ++++.+|... ..+++|+++++.
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCC
Confidence 6666666665432111111 11234578888888887 6788887543 346788888887
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=4.4e-18 Score=160.02 Aligned_cols=326 Identities=16% Similarity=0.190 Sum_probs=171.9
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+-+|-++-.+++++..-..-+|..+. .+++++.|.|.+. ++..+|.+ +..+.+|+.|.+.+ +.+..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~---qMt~~~WLkLnrt-~L~~vPeE---------L~~lqkLEHLs~~H-N~L~~ 69 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVE---QMTQMTWLKLNRT-KLEQVPEE---------LSRLQKLEHLSMAH-NQLIS 69 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHH---HhhheeEEEechh-hhhhChHH---------HHHHhhhhhhhhhh-hhhHh
Confidence 44666777777776655455677766 6777777777765 56676666 66677777777765 34544
Q ss_pred ccCCCcccccCCCccEEEeecCCCc--eEecccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeeccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGF--MVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEF 158 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~ 158 (388)
+... ...+|.|+.+.++.+ ++ ..+|...+ .+.-|..|+++.|.. ..+|.+ .-+++-.|+++.
T Consensus 70 vhGE---Ls~Lp~LRsv~~R~N-~LKnsGiP~diF------~l~dLt~lDLShNqL----~EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 70 VHGE---LSDLPRLRSVIVRDN-NLKNSGIPTDIF------RLKDLTILDLSHNQL----REVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred hhhh---hccchhhHHHhhhcc-ccccCCCCchhc------ccccceeeecchhhh----hhcchhhhhhcCcEEEEccc
Confidence 4333 445666666666655 22 23444443 555566666666555 455543 244555555555
Q ss_pred cccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcc--ccccceeeeee-ccceeccccCCCCCCccceEEecCC
Q 036801 159 VDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGV--EVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSC 235 (388)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c 235 (388)
+..-+ +|-..+-+++.|-.|+++.|.+ +.+|... ..+|..+.++- .+..+.- ..++.+++|+.|.+++.
T Consensus 136 N~Iet---IPn~lfinLtDLLfLDLS~NrL----e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 136 NNIET---IPNSLFINLTDLLFLDLSNNRL----EMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred Ccccc---CCchHHHhhHhHhhhccccchh----hhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccc
Confidence 43322 4444444555555555544444 2222110 11111111111 2222211 45556677777777665
Q ss_pred cc-ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC-Ccc----------cc
Q 036801 236 HH-LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD-DHD----------AA 303 (388)
Q Consensus 236 ~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~-~~~----------~~ 303 (388)
.. +..+|+.+..+.+|..++++ |+++.-+|.. .-.+++|+.|++++ ++++++....+.. ..+ ..
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPec--ly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPEC--LYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred cchhhcCCCchhhhhhhhhcccc-ccCCCcchHH--HhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccc
Confidence 43 45677777777777777777 5667666663 34667777777744 3455443221110 000 01
Q ss_pred ccceecccccceeeccccc-ccceeccCc---------------------ccccCCCcceEeccCCcccccCCCCCcCCC
Q 036801 304 KDEVIAFSKLNELRLLNLE-SLRSFYSGY---------------------CALNFPSLERLLVDDCTNMEIFSRGELSTP 361 (388)
Q Consensus 304 ~~~~~~~~~L~~L~l~~c~-~l~~l~~~~---------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 361 (388)
+.....+++|+.|.+.+.. ..+.+|+++ -.+.|++|+.|.+. |+.+-.+|..+.-++
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLP 362 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcC
Confidence 1122345666666554321 123344433 00345555555543 455555666555556
Q ss_pred CcceEEEe
Q 036801 362 MLHKVQLN 369 (388)
Q Consensus 362 ~L~~l~l~ 369 (388)
.|+.++++
T Consensus 363 ~l~vLDlr 370 (1255)
T KOG0444|consen 363 DLKVLDLR 370 (1255)
T ss_pred Ccceeecc
Confidence 66666655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=7.8e-18 Score=158.34 Aligned_cols=308 Identities=16% Similarity=0.143 Sum_probs=162.8
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccc-cccEeeecccccccccccccccccceEecccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCH-VLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
+.+++|++|.+.++ .+.++ -..+. .++.||.+.+++|. +...+|.+ +..+.-|+.|++++ +.++
T Consensus 52 ~~lqkLEHLs~~HN-~L~~v-hGELs---~Lp~LRsv~~R~N~LKnsGiP~d---------iF~l~dLt~lDLSh-NqL~ 116 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHN-QLISV-HGELS---DLPRLRSVIVRDNNLKNSGIPTD---------IFRLKDLTILDLSH-NQLR 116 (1255)
T ss_pred HHHhhhhhhhhhhh-hhHhh-hhhhc---cchhhHHHhhhccccccCCCCch---------hcccccceeeecch-hhhh
Confidence 45677778887774 34433 12233 67778887777763 22233333 56677777777776 4677
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeecccc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEFV 159 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~~ 159 (388)
+.|.. .....++-+|+++++ +++.+|...+ -++.-|-.|++++|.. ..+|+- .+.+|++|.++++
T Consensus 117 EvP~~---LE~AKn~iVLNLS~N-~IetIPn~lf-----inLtDLLfLDLS~NrL----e~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 117 EVPTN---LEYAKNSIVLNLSYN-NIETIPNSLF-----INLTDLLFLDLSNNRL----EMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hcchh---hhhhcCcEEEEcccC-ccccCCchHH-----HhhHhHhhhccccchh----hhcCHHHHHHhhhhhhhcCCC
Confidence 66655 445666777777766 6666666655 3666666677776665 455553 3666777777665
Q ss_pred ccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCcc--ccccceeeeee-ccceeccccCCCCCCccceEEecCC
Q 036801 160 DELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGV--EVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSC 235 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~--~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c 235 (388)
.-.- +....+..+++|++|.+ +.+.. ...+|..+ ..||...+++- ++..+| +.+-.+++|+.|+++++
T Consensus 184 PL~h---fQLrQLPsmtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 184 PLNH---FQLRQLPSMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhH---HHHhcCccchhhhhhhcccccch---hhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheeccCcC
Confidence 4322 11112333444444444 22221 12222111 11222111111 333332 33334566666666665
Q ss_pred ccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc--cccccCCCC-----------Cccc
Q 036801 236 HHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT--EIVLADDDD-----------DHDA 302 (388)
Q Consensus 236 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~i~~~~~~~-----------~~~~ 302 (388)
.++.+......-.+|++|.++. +.++.+|. +++.++.|+.|.+.+ ++++ .++.+.+.. ..+-
T Consensus 256 -~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 256 -KITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred -ceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccccc
Confidence 3444433333444566666653 34555544 334556666655532 2221 111000000 0000
Q ss_pred cccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCC
Q 036801 303 AKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS 354 (388)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~ 354 (388)
.+++..-+++|+.|.+.. +.+..+|..+ .-++.|+.|+++..|++..=|
T Consensus 331 VPEglcRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CchhhhhhHHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCccCCC
Confidence 122233467888887755 5688898887 668999999999999876544
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.2e-12 Score=131.58 Aligned_cols=252 Identities=19% Similarity=0.099 Sum_probs=134.8
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+-..|+++++ .++.+ |..+. ++|+.|.+.+| +++.++.. .++|++|++.+ ++++.++..
T Consensus 202 ~~~~LdLs~~-~LtsL-P~~l~-----~~L~~L~L~~N-~Lt~LP~l------------p~~Lk~LdLs~-N~LtsLP~l 260 (788)
T PRK15387 202 GNAVLNVGES-GLTTL-PDCLP-----AHITTLVIPDN-NLTSLPAL------------PPELRTLEVSG-NQLTSLPVL 260 (788)
T ss_pred CCcEEEcCCC-CCCcC-Ccchh-----cCCCEEEccCC-cCCCCCCC------------CCCCcEEEecC-CccCcccCc
Confidence 3456788775 56655 44444 25788888876 56665432 57788888876 467766533
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL 166 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~ 166 (388)
.++|++|++.+| .+..++. ...+|..|++.+|.+ ..+|. ..++|+.|+++++....
T Consensus 261 ------p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N~L----t~LP~-~p~~L~~LdLS~N~L~~--- 316 (788)
T PRK15387 261 ------PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGNQL----TSLPV-LPPGLQELSVSDNQLAS--- 316 (788)
T ss_pred ------ccccceeeccCC-chhhhhh---------chhhcCEEECcCCcc----ccccc-cccccceeECCCCcccc---
Confidence 577888888777 4544432 235677777777766 44554 24678888887764322
Q ss_pred cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801 167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST 246 (388)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 246 (388)
+|. ...+|+.|.+..|.+ + .+|. ...+|+.|++++| .++.+|..
T Consensus 317 Lp~----lp~~L~~L~Ls~N~L---~-~LP~-------------------------lp~~Lq~LdLS~N-~Ls~LP~l-- 360 (788)
T PRK15387 317 LPA----LPSELCKLWAYNNQL---T-SLPT-------------------------LPSGLQELSVSDN-QLASLPTL-- 360 (788)
T ss_pred CCC----CcccccccccccCcc---c-cccc-------------------------cccccceEecCCC-ccCCCCCC--
Confidence 222 123566666644555 2 1221 1135666666554 34444431
Q ss_pred CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccce
Q 036801 247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS 326 (388)
Q Consensus 247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 326 (388)
..+|+.|.+++ +.+..++. ...+|+.|+++++ .++.+.. .+++|+.|+++++ .+..
T Consensus 361 -p~~L~~L~Ls~-N~L~~LP~-----l~~~L~~LdLs~N-~Lt~LP~---------------l~s~L~~LdLS~N-~Lss 416 (788)
T PRK15387 361 -PSELYKLWAYN-NRLTSLPA-----LPSGLKELIVSGN-RLTSLPV---------------LPSELKELMVSGN-RLTS 416 (788)
T ss_pred -Ccccceehhhc-cccccCcc-----cccccceEEecCC-cccCCCC---------------cccCCCEEEccCC-cCCC
Confidence 23455555553 23444332 1234556666432 3333221 1245555555554 3444
Q ss_pred eccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 327 FYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 327 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
+|.. ..+|+.|++++ ++++.+|..+..++.|+.|+++
T Consensus 417 IP~l-----~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 417 LPML-----PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred CCcc-----hhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence 4321 13455555554 3455555555555555555555
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=1.6e-15 Score=136.05 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred cccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 322 ESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 322 ~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
..++.++... ...+.+|..|++.+ +.++.+|.++..|.+|+++++.+
T Consensus 491 nqi~~vd~~~-l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 491 NQIGSVDPSG-LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred ccccccChHH-hhhhhhcceeccCC-CchhhCChhhccccceeEEEecC
Confidence 3455665542 25789999999987 68999999999999999999983
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=2.6e-15 Score=135.38 Aligned_cols=262 Identities=18% Similarity=0.172 Sum_probs=132.0
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFL 142 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~ 142 (388)
.+|+++.|.+.+|.++++..... ....|+.|+.|.+..|..++.......+ +.+++|.+|++++|..+++ +..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la----~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLA----EGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHH----HhhhhHHHhhhccCchhhcCcchH
Confidence 34555555555444443321110 0223455555555555544433222111 3445555555555433211 111
Q ss_pred cchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCC
Q 036801 143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESS 221 (388)
Q Consensus 143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l 221 (388)
+..| +..++.+..++|...+ .......-.++.-+.++++ .|+.+ ++. ++| +.-
T Consensus 237 ~~rG-~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~l---TD~-------------------~~~--~i~ 290 (483)
T KOG4341|consen 237 LQRG-CKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQL---TDE-------------------DLW--LIA 290 (483)
T ss_pred Hhcc-chhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccc---cch-------------------HHH--HHh
Confidence 1111 3345555555665544 2222223344555666666 66555 211 011 112
Q ss_pred CCCCccceEEecCCccccccCCC--CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801 222 SIMDNLVILRVSSCHHLINLVPS--STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD 299 (388)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 299 (388)
..+..|+.|+.++|..+++.+-+ ....++|+.+.+..|..+.+.......++.+.|+.+++..|..+++-....-
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl--- 367 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL--- 367 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh---
Confidence 23456677777777666544332 2456777777777777777665555566677777777777654443211000
Q ss_pred ccccccceecccccceeeccccccccee-----ccCcccccCCCcceEeccCCccccc-CCCCCcCCCCcceEEEe
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLESLRSF-----YSGYCALNFPSLERLLVDDCTNMEI-FSRGELSTPMLHKVQLN 369 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~ 369 (388)
....+.|+.|.+++|..+++. .... ..+..|+.+++++||.+.. .-.....|++|+++++.
T Consensus 368 -------s~~C~~lr~lslshce~itD~gi~~l~~~~--c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 368 -------SRNCPRLRVLSLSHCELITDEGIRHLSSSS--CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred -------ccCCchhccCChhhhhhhhhhhhhhhhhcc--ccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 113567777777777655544 2222 4566677777777776543 22334567777777776
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.28 E-value=2.6e-14 Score=129.00 Aligned_cols=313 Identities=17% Similarity=0.178 Sum_probs=195.6
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
.|+.|.++||......+...+.. .+++++.|.+.+|.++++..-... .+.|++|++|.+..|+.+++....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHH
Confidence 57889999988776554455555 799999999999975555222111 346899999999998888764332
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccc-cccccchhhccCccEeecccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITT-NKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~-~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
. ....|++|++|+++.|+.+.+-.- ..+......++.+..+||.... .....-...+..+..+++..|..++ +
T Consensus 210 ~-la~gC~kL~~lNlSwc~qi~~~gv----~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D 283 (483)
T KOG4341|consen 210 Y-LAEGCRKLKYLNLSWCPQISGNGV----QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-D 283 (483)
T ss_pred H-HHHhhhhHHHhhhccCchhhcCcc----hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-c
Confidence 1 134599999999999988765111 1122456667777777765421 0001111235567777877887666 4
Q ss_pred ccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801 166 LSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP- 243 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~- 243 (388)
.-...+-.++..|+.+.. +|+.+ +. .+ . | .--.+.++|+.|.+.+|..+++.-.
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~---~d-~~---l---------------~--aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDI---TD-EV---L---------------W--ALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCC---ch-HH---H---------------H--HHhcCCCceEEEeccccchhhhhhhh
Confidence 433334556788888888 77665 21 11 1 0 0011447888888888887655432
Q ss_pred -CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801 244 -SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE 322 (388)
Q Consensus 244 -~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 322 (388)
...+.+.|+.+.+..|..+.+-.....+.+++.|+.|.++.|..+++..+ .++....-....|+.+.+.+|+
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCC
Confidence 22567788888888887666654555566788899998888876664411 1111111234678888888888
Q ss_pred ccceeccCcccccCCCcceEeccCCccccc--CCCCCcCCCCcceE
Q 036801 323 SLRSFYSGYCALNFPSLERLLVDDCTNMEI--FSRGELSTPMLHKV 366 (388)
Q Consensus 323 ~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~l 366 (388)
.+.+-.... ...+++|+.+++.+|..... +.....++|+++..
T Consensus 413 ~i~d~~Le~-l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 413 LITDATLEH-LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CchHHHHHH-HhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 766543321 25678899999888886643 22223355665543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=4.2e-11 Score=120.48 Aligned_cols=235 Identities=19% Similarity=0.162 Sum_probs=152.1
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|+.|.+.++ .++.+ |. ..++|++|++++| +++.++.. .++|+.|++.++ .+..++.
T Consensus 222 ~~L~~L~L~~N-~Lt~L-P~------lp~~Lk~LdLs~N-~LtsLP~l------------p~sL~~L~Ls~N-~L~~Lp~ 279 (788)
T PRK15387 222 AHITTLVIPDN-NLTSL-PA------LPPELRTLEVSGN-QLTSLPVL------------PPGLLELSIFSN-PLTHLPA 279 (788)
T ss_pred cCCCEEEccCC-cCCCC-CC------CCCCCcEEEecCC-ccCcccCc------------ccccceeeccCC-chhhhhh
Confidence 37899999984 56665 43 4678999999998 67776542 468899999874 5776654
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
. +++|+.|++.+| .++.+| ...++|+.|++++|.+ ..+|. ..++|+.|+++++..-.
T Consensus 280 l------p~~L~~L~Ls~N-~Lt~LP---------~~p~~L~~LdLS~N~L----~~Lp~-lp~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 280 L------PSGLCKLWIFGN-QLTSLP---------VLPPGLQELSVSDNQL----ASLPA-LPSELCKLWAYNNQLTS-- 336 (788)
T ss_pred c------hhhcCEEECcCC-cccccc---------ccccccceeECCCCcc----ccCCC-CcccccccccccCcccc--
Confidence 3 578999999888 566554 2457899999999877 44443 24578888888764322
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
+|. ...+|+.|++..|++ + .+|. ..++|+.|+++++ .+..+|..
T Consensus 337 -LP~----lp~~Lq~LdLS~N~L---s-~LP~-------------------------lp~~L~~L~Ls~N-~L~~LP~l- 380 (788)
T PRK15387 337 -LPT----LPSGLQELSVSDNQL---A-SLPT-------------------------LPSELYKLWAYNN-RLTSLPAL- 380 (788)
T ss_pred -ccc----cccccceEecCCCcc---C-CCCC-------------------------CCcccceehhhcc-ccccCccc-
Confidence 332 135799999976777 2 2331 1245666777664 45555432
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR 325 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 325 (388)
..+|+.|+++++ .+..+|. ..++|+.|+++++ .++.+.. .+.+|+.|++.++ .+.
T Consensus 381 --~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~N-qLt 435 (788)
T PRK15387 381 --PSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLT 435 (788)
T ss_pred --ccccceEEecCC-cccCCCC-----cccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhccC-ccc
Confidence 346777777753 4555543 2356777777654 3444321 1345667777664 466
Q ss_pred eeccCcccccCCCcceEeccCCc
Q 036801 326 SFYSGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c~ 348 (388)
.+|..+ ..+++|+.|++++++
T Consensus 436 ~LP~sl--~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 436 RLPESL--IHLSSETTVNLEGNP 456 (788)
T ss_pred ccChHH--hhccCCCeEECCCCC
Confidence 776654 567777777777654
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=5e-12 Score=129.54 Aligned_cols=131 Identities=24% Similarity=0.352 Sum_probs=91.3
Q ss_pred cCCCCCCccceEEecCCccccccCCCC-----C-CCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc
Q 036801 219 ESSSIMDNLVILRVSSCHHLINLVPSS-----T-SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV 292 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~-----~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 292 (388)
..+..+.+|++|.|.+|........+. . .|+++..+.+.+|....+..+. ...|+|+.|.+.+|..++++.
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCC
Confidence 455678999999999997754322211 2 2667888888888888777653 256899999999999888775
Q ss_pred ccCCCCCccccccceeccccccee-ecccccccceeccCcccccCCCcceEeccCCcccccCCCC
Q 036801 293 LADDDDDHDAAKDEVIAFSKLNEL-RLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG 356 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 356 (388)
......... ......|.++..+ .+.+.+.++.+.... ..++.|+.+.+..||+++.+|..
T Consensus 788 ~~~k~~~~l--~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 788 PKLKALLEL--KELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred CHHHHhhhc--ccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 433322110 0123567777777 466777777776654 46677999999999999998865
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=1.5e-11 Score=124.10 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=53.0
Q ss_pred CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccc
Q 036801 225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAK 304 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~ 304 (388)
++|+.|++.+| .++.+|..+ .++|+.|+++++ ++..+|.. ..++|+.|++++| .++.+...
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~----lp~~L~~LdLs~N-~Lt~LP~~---------- 385 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QITVLPET----LPPTITTLDVSRN-ALTNLPEN---------- 385 (754)
T ss_pred ccceeccccCC-ccccCChhh--cCcccEEECCCC-CCCcCChh----hcCCcCEEECCCC-cCCCCCHh----------
Confidence 56777777666 344454432 256777777764 45544432 1356777777654 34433211
Q ss_pred cceecccccceeecccccccceeccCc--ccccCCCcceEeccCCc
Q 036801 305 DEVIAFSKLNELRLLNLESLRSFYSGY--CALNFPSLERLLVDDCT 348 (388)
Q Consensus 305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~~L~~L~l~~c~ 348 (388)
....|+.|+++++ ++..+|... +...++.+..|.+.+.+
T Consensus 386 ----l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 ----LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ----HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1245666776664 455554322 11224666677666543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=2.2e-11 Score=122.98 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=134.8
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
.+.+.|.+++. .++.+ |..+. ++|+.|++++| +++.++.. .+++|+.|++.++ +++.++.
T Consensus 178 ~~~~~L~L~~~-~LtsL-P~~Ip-----~~L~~L~Ls~N-~LtsLP~~-----------l~~nL~~L~Ls~N-~LtsLP~ 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI-PACIP-----EQITTLILDNN-ELKSLPEN-----------LQGNIKTLYANSN-QLTSIPA 237 (754)
T ss_pred cCceEEEeCCC-CcCcC-Ccccc-----cCCcEEEecCC-CCCcCChh-----------hccCCCEEECCCC-ccccCCh
Confidence 35677888774 45554 44333 35788888887 56666553 2357888888764 5776665
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
.. .++|+.|++++| .+..+|... ..+|+.|++++|.+ ..+|....++|+.|+++++. ++
T Consensus 238 ~l-----~~~L~~L~Ls~N-~L~~LP~~l--------~s~L~~L~Ls~N~L----~~LP~~l~~sL~~L~Ls~N~-Lt-- 296 (754)
T PRK15370 238 TL-----PDTIQEMELSIN-RITELPERL--------PSALQSLDLFHNKI----SCLPENLPEELRYLSVYDNS-IR-- 296 (754)
T ss_pred hh-----hccccEEECcCC-ccCcCChhH--------hCCCCEEECcCCcc----CccccccCCCCcEEECCCCc-cc--
Confidence 42 467888888877 455554332 24678888887766 45565555678888887764 22
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPS 244 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 244 (388)
.+|.. + .++|+.|++..|.+ ..+|....++|+...+.- .+..++. .+ .++|+.|++++| .++.+|..
T Consensus 297 ~LP~~-l--p~sL~~L~Ls~N~L----t~LP~~l~~sL~~L~Ls~N~Lt~LP~--~l--~~sL~~L~Ls~N-~L~~LP~~ 364 (754)
T PRK15370 297 TLPAH-L--PSGITHLNVQSNSL----TALPETLPPGLKTLEAGENALTSLPA--SL--PPELQVLDVSKN-QITVLPET 364 (754)
T ss_pred cCccc-c--hhhHHHHHhcCCcc----ccCCccccccceeccccCCccccCCh--hh--cCcccEEECCCC-CCCcCChh
Confidence 13321 1 23577777755666 334544444454333322 4444432 22 268888888887 45555543
Q ss_pred CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccc
Q 036801 245 STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEI 291 (388)
Q Consensus 245 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 291 (388)
+ .++|+.|++++| .+..+|.. + ...|+.|+++++ .++.+
T Consensus 365 l--p~~L~~LdLs~N-~Lt~LP~~-l---~~sL~~LdLs~N-~L~~L 403 (754)
T PRK15370 365 L--PPTITTLDVSRN-ALTNLPEN-L---PAALQIMQASRN-NLVRL 403 (754)
T ss_pred h--cCCcCEEECCCC-cCCCCCHh-H---HHHHHHHhhccC-CcccC
Confidence 3 357888888875 56666553 1 236788888664 44443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-12 Score=127.89 Aligned_cols=240 Identities=18% Similarity=0.219 Sum_probs=149.3
Q ss_pred CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh--ccCccEeeccccccccccccchh
Q 036801 93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL--LCKLKCLDVEFVDELTTILSLDD 170 (388)
Q Consensus 93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~--l~~L~~L~l~~~~~~~~~~~~~~ 170 (388)
..+|++++++.+ +++.+| +.. ..+++|+.+.+..|.+ ..+|... ..+|+.|.+..+.-.. .|.
T Consensus 240 p~nl~~~dis~n-~l~~lp-~wi-----~~~~nle~l~~n~N~l----~~lp~ri~~~~~L~~l~~~~nel~y---ip~- 304 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLP-EWI-----GACANLEALNANHNRL----VALPLRISRITSLVSLSAAYNELEY---IPP- 304 (1081)
T ss_pred cccceeeecchh-hhhcch-HHH-----HhcccceEecccchhH----HhhHHHHhhhhhHHHHHhhhhhhhh---CCC-
Confidence 455666666655 555555 222 4667777777766665 4455543 4467777666654221 332
Q ss_pred HhhcCCCccEEEEEeccCCCCceeecCccccccce----eeeee-ccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 171 FLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE----AYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 171 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~----~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
.....+.|++|++..|++ ..+|+.++..+-. ....- .+...+. .+-..++.|+.|++.++..-....+.+
T Consensus 305 ~le~~~sL~tLdL~~N~L----~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNL----PSLPDNFLAVLNASLNTLNVSSNKLSTLPS-YEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred cccccceeeeeeehhccc----cccchHHHhhhhHHHHHHhhhhcccccccc-ccchhhHHHHHHHHhcCcccccchhhh
Confidence 344577888888866666 5566543321110 00000 2222222 333456889999999886666667778
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR 325 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 325 (388)
.++++|+.|++++ +.+..+|.. ....++.|++|++++ ++++.+.... ..++.|+.|...+ ..+.
T Consensus 380 ~~~~hLKVLhLsy-NrL~~fpas-~~~kle~LeeL~LSG-NkL~~Lp~tv------------a~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSY-NRLNSFPAS-KLRKLEELEELNLSG-NKLTTLPDTV------------ANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred ccccceeeeeecc-cccccCCHH-HHhchHHhHHHhccc-chhhhhhHHH------------HhhhhhHHHhhcC-Ccee
Confidence 8999999999996 577777765 346789999999966 4677665321 2346666665544 3577
Q ss_pred eeccCcccccCCCcceEeccCCcccccC--CCCCcCCCCcceEEEeccCCccc
Q 036801 326 SFYSGYCALNFPSLERLLVDDCTNMEIF--SRGELSTPMLHKVQLNMWDEACW 376 (388)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~l~l~~~~~~~~ 376 (388)
++| .. ..++.|+.++++ |++++.+ |... ..|+|+.+++. |+.|
T Consensus 444 ~fP-e~--~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlS---GN~~ 488 (1081)
T KOG0618|consen 444 SFP-EL--AQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLS---GNTR 488 (1081)
T ss_pred ech-hh--hhcCcceEEecc-cchhhhhhhhhhC-CCcccceeecc---CCcc
Confidence 777 33 578889999987 5777653 3322 23889999998 6665
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=6.2e-14 Score=125.96 Aligned_cols=240 Identities=19% Similarity=0.203 Sum_probs=127.2
Q ss_pred cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
+..+..|.+|.+.+ +++...|+. ++.+..++.++++.+ ++..+|.+.+ .++.+..++++.++. ..
T Consensus 64 l~nL~~l~vl~~~~-n~l~~lp~a---ig~l~~l~~l~vs~n-~ls~lp~~i~------s~~~l~~l~~s~n~~----~e 128 (565)
T KOG0472|consen 64 LKNLACLTVLNVHD-NKLSQLPAA---IGELEALKSLNVSHN-KLSELPEQIG------SLISLVKLDCSSNEL----KE 128 (565)
T ss_pred hhcccceeEEEecc-chhhhCCHH---HHHHHHHHHhhcccc-hHhhccHHHh------hhhhhhhhhccccce----ee
Confidence 44555566666555 345555544 445555555555554 4444555542 455555555555544 33
Q ss_pred cchhh--ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccC
Q 036801 143 FSKDL--LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHES 220 (388)
Q Consensus 143 lp~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~ 220 (388)
+|.+. +-.|..++...++..+ .|. .+..+.+|.++.+..+++ ++ +++ ..
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~s---lp~-~~~~~~~l~~l~~~~n~l---~~---------------------l~~-~~ 179 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQISS---LPE-DMVNLSKLSKLDLEGNKL---KA---------------------LPE-NH 179 (565)
T ss_pred cCchHHHHhhhhhhhcccccccc---Cch-HHHHHHHHHHhhccccch---hh---------------------CCH-HH
Confidence 44332 3344444444333221 333 333445555555533333 11 111 11
Q ss_pred CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH 300 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 300 (388)
+ .++.|++|+...+ .++.+|+.++.+.+|+-|++.. +.+..+|+. .++..|++|++ +-+.++.+..+.
T Consensus 180 i-~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef---~gcs~L~Elh~-g~N~i~~lpae~----- 247 (565)
T KOG0472|consen 180 I-AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEF---PGCSLLKELHV-GENQIEMLPAEH----- 247 (565)
T ss_pred H-HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCC---CccHHHHHHHh-cccHHHhhHHHH-----
Confidence 2 3566677666443 4566777777777777777764 455555542 24455666665 333343332211
Q ss_pred cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
...++++..|++++ .+++.+|.+. ..+.+|++|++++ +.+..+|....++ .|+.+.++
T Consensus 248 ------~~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 248 ------LKHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred ------hcccccceeeeccc-cccccCchHH--HHhhhhhhhcccC-CccccCCcccccc-eeeehhhc
Confidence 11356677777766 3677777766 5567777777776 5677777666555 66666666
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=9.1e-13 Score=129.69 Aligned_cols=131 Identities=21% Similarity=0.212 Sum_probs=87.4
Q ss_pred ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCcc
Q 036801 148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNL 227 (388)
Q Consensus 148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L 227 (388)
++.|+.|.+.++.--+ ..+| .+.+...|+.|.+..|.+ . .++. ..+.++..|
T Consensus 358 ~~~Lq~LylanN~Ltd-~c~p--~l~~~~hLKVLhLsyNrL----~--------------------~fpa-s~~~kle~L 409 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTD-SCFP--VLVNFKHLKVLHLSYNRL----N--------------------SFPA-SKLRKLEEL 409 (1081)
T ss_pred hHHHHHHHHhcCcccc-cchh--hhccccceeeeeeccccc----c--------------------cCCH-HHHhchHHh
Confidence 4456666665544332 3333 455666677777755555 2 2222 455577889
Q ss_pred ceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccce
Q 036801 228 VILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV 307 (388)
Q Consensus 228 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 307 (388)
++|+++|+ +++.+|.....+..|++|...+ +.+..+|.. ..++.|+.+|+ +|+.+.++......
T Consensus 410 eeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~---~~l~qL~~lDl-S~N~L~~~~l~~~~---------- 473 (1081)
T KOG0618|consen 410 EELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFPEL---AQLPQLKVLDL-SCNNLSEVTLPEAL---------- 473 (1081)
T ss_pred HHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeechhh---hhcCcceEEec-ccchhhhhhhhhhC----------
Confidence 99999887 7888887778888888886653 567777753 37889999999 78888877644322
Q ss_pred ecccccceeecccccc
Q 036801 308 IAFSKLNELRLLNLES 323 (388)
Q Consensus 308 ~~~~~L~~L~l~~c~~ 323 (388)
+-++|++|++++.+.
T Consensus 474 -p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 -PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -CCcccceeeccCCcc
Confidence 127899999988654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=1.2e-12 Score=104.69 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=122.2
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+.++++|.++++ .++.+ |+.++ .+.+|+.|+++++ +++++|.. +..+++|+.|.+. ++++...
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-ppnia---~l~nlevln~~nn-qie~lp~~---------issl~klr~lnvg-mnrl~~l 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-PPNIA---ELKNLEVLNLSNN-QIEELPTS---------ISSLPKLRILNVG-MNRLNIL 94 (264)
T ss_pred chhhhhhhhcccC-ceeec-CCcHH---Hhhhhhhhhcccc-hhhhcChh---------hhhchhhhheecc-hhhhhcC
Confidence 4567889999985 57766 55689 8999999999998 79998887 7889999999996 6788888
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDE 161 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~ 161 (388)
|.+ +++||.|++|+++++..-+..-+..+ -.+..|+.|.++.+.. ..+|. +.+++||.|.+.++.-
T Consensus 95 prg---fgs~p~levldltynnl~e~~lpgnf-----f~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 95 PRG---FGSFPALEVLDLTYNNLNENSLPGNF-----FYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred ccc---cCCCchhhhhhccccccccccCCcch-----hHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCch
Confidence 888 78999999999999843333323322 3678889999988876 55666 4588999999998876
Q ss_pred ccccccchhHhhcCCCccEEEEEeccC
Q 036801 162 LTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
++ .|. .++.++.|+.|.|.+|.+
T Consensus 163 l~---lpk-eig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 163 LS---LPK-EIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hh---CcH-HHHHHHHHHHHhccccee
Confidence 65 554 788899999999977777
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-10 Score=119.50 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=57.9
Q ss_pred CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc-ccCCCCCcccc
Q 036801 225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV-LADDDDDHDAA 303 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~~~~ 303 (388)
+++..+.+.+|.....+ .+..-.++|+.|.+.+|..+.+.... ...+..+.++.+ .++.+.... ....+ +-...
T Consensus 747 ~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~-~f~~~~~l~~~~~l~-~l~~i 821 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELIL-PFNKLEGLRMLCSLG-GLPQL 821 (889)
T ss_pred HHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEe-cccccccceeeecCC-CCcee
Confidence 45666666666555443 33345567778877777666655432 123333333222 111111110 00000 00000
Q ss_pred ccceecccccceeecccccccceeccCcccccCCCcceEeccCC-cccccCCCC
Q 036801 304 KDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC-TNMEIFSRG 356 (388)
Q Consensus 304 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c-~~l~~l~~~ 356 (388)
+.....++.|+.+.+..|+++. .+|.+.++.+.+| +.+...|.+
T Consensus 822 ~~~~l~~~~l~~~~ve~~p~l~---------~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 822 YWLPLSFLKLEELIVEECPKLG---------KLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred EecccCccchhheehhcCcccc---------cCccccccceeccccceeecCCc
Confidence 1111234557777777776544 4566677788886 667777664
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=2.7e-11 Score=109.02 Aligned_cols=225 Identities=13% Similarity=0.152 Sum_probs=133.5
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
.-+.+.+.. +.++.++|.+|. .+++||+|||++| +++.|.... +..++.|..|.+.+.+++++++.+
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~---~l~~LRrLdLS~N-~Is~I~p~A--------F~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFK---TLHRLRRLDLSKN-NISFIAPDA--------FKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cceEEEecc-CCcccCChhhcc---chhhhceeccccc-chhhcChHh--------hhhhHhhhHHHhhcCCchhhhhhh
Confidence 456788887 578899888888 8999999999998 677776653 556778888888887889988877
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccc----------------------------
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITT---------------------------- 138 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~---------------------------- 138 (388)
. ++.+.+|+.|.+.-| ++.-+....+ ..+++|..|.+.++.+-.
T Consensus 135 ~--F~gL~slqrLllNan-~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 135 A--FGGLSSLQRLLLNAN-HINCIRQDAL-----RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred H--hhhHHHHHHHhcChh-hhcchhHHHH-----HHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 5 566666666655433 2222222222 233333333333322200
Q ss_pred ----------------------------cccccchhhc-cCccEe--eccccccccccccchhHhhcCCCccEEEEEecc
Q 036801 139 ----------------------------NKFLFSKDLL-CKLKCL--DVEFVDELTTILSLDDFLQRFHTLKVLQIEGYN 187 (388)
Q Consensus 139 ----------------------------~~~~lp~~~l-~~L~~L--~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 187 (388)
.+..+....+ ..++.+ .+....... ...|...++.+++|++|++++|+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEeccCCCc
Confidence 0000000000 012222 111111222 45666778999999999998888
Q ss_pred CCCCceeecCccccccce-eeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801 188 YWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH 258 (388)
Q Consensus 188 l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 258 (388)
+ +.+.++.|..+.+ .++.+ .+..+.. ..+..+..|+.|+++++...+-.|..+.....|..|.+-.
T Consensus 286 i----~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 286 I----TRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred c----chhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 8 4455555555544 34444 5555554 6677778888888888743333344556667777777743
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=3.9e-10 Score=104.46 Aligned_cols=94 Identities=17% Similarity=0.045 Sum_probs=45.9
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc------CCCcccccCCCccEEEeecCC
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS------TGDVHMLEFPSLKELWISRCP 105 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~------~~~~~~~~~~~L~~L~l~~c~ 105 (388)
.+++|++|++++|. ++..... .....+...+.|+.+.+.++. +...+ ... ...+++|++|++++|.
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~----~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAK----ALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQG--LTKGCGLQELDLSDNA 92 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHH----HHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHH--HHhcCceeEEEccCCC
Confidence 67778888888873 3221000 000014456667777776542 22100 011 2346678888887774
Q ss_pred CceEecccccCCccccccCCccEEEEeecCc
Q 036801 106 GFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 106 ~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.-...+... ...... ++|++|++++|..
T Consensus 93 ~~~~~~~~~--~~l~~~-~~L~~L~ls~~~~ 120 (319)
T cd00116 93 LGPDGCGVL--ESLLRS-SSLQELKLNNNGL 120 (319)
T ss_pred CChhHHHHH--HHHhcc-CcccEEEeeCCcc
Confidence 322111111 001122 4477777777655
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.69 E-value=2.8e-10 Score=91.29 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=20.2
Q ss_pred cCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801 219 ESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH 258 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 258 (388)
..++.+++|+.|.+.++ .+-++|..++.++.|+.|+|.+
T Consensus 144 ~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence 34445555555555554 3344555555555555555554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.67 E-value=1.5e-09 Score=97.87 Aligned_cols=251 Identities=17% Similarity=0.140 Sum_probs=148.0
Q ss_pred ccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccchh
Q 036801 68 RLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFSKD 146 (388)
Q Consensus 68 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp~~ 146 (388)
.-..+++.. +.++.+|++. ++.+++|++|+++++ +++.+.+..+ +.+++|.+|.+.+ |++ ..+|.+
T Consensus 68 ~tveirLdq-N~I~~iP~~a--F~~l~~LRrLdLS~N-~Is~I~p~AF-----~GL~~l~~Lvlyg~NkI----~~l~k~ 134 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGA--FKTLHRLRRLDLSKN-NISFIAPDAF-----KGLASLLSLVLYGNNKI----TDLPKG 134 (498)
T ss_pred cceEEEecc-CCcccCChhh--ccchhhhceeccccc-chhhcChHhh-----hhhHhhhHHHhhcCCch----hhhhhh
Confidence 455677765 5788999887 888999999999988 7887777776 7888888888888 555 667776
Q ss_pred h---ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC
Q 036801 147 L---LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI 223 (388)
Q Consensus 147 ~---l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~ 223 (388)
. +..|+.|.+.-++.. -.+...+..+++|..|.+..+.+ ..++.+.+. .
T Consensus 135 ~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~----q~i~~~tf~---------------------~ 186 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKI----QSICKGTFQ---------------------G 186 (498)
T ss_pred HhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhh----hhhcccccc---------------------c
Confidence 5 445666665544322 24556788899999888855555 334433322 2
Q ss_pred CCccceEEecCCcccc------------ccCCCCC---------------------CC-CCcCEE---EEecCCCceeec
Q 036801 224 MDNLVILRVSSCHHLI------------NLVPSST---------------------SF-QNLTTL---EISHCNGLKNVL 266 (388)
Q Consensus 224 l~~L~~L~l~~c~~l~------------~l~~~~~---------------------~~-~~L~~L---~l~~c~~l~~~~ 266 (388)
+..++.+.+..++.+. ..+.... .| -.++.+ ..+.| ......
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~c 265 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSIC 265 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcC
Confidence 2233333332222110 0000000 00 012222 11222 222222
Q ss_pred chhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccC
Q 036801 267 TFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD 346 (388)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~ 346 (388)
+...++.+++|++|+++ .+.+++|.... +-...++++|.+.. .+++.+..+. +..+..|+.|.+.+
T Consensus 266 P~~cf~~L~~L~~lnls-nN~i~~i~~~a-----------Fe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLS-NNKITRIEDGA-----------FEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYD 331 (498)
T ss_pred hHHHHhhcccceEeccC-CCccchhhhhh-----------hcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecC
Confidence 33356678899999994 45676663221 11246777777766 3577776665 56778888888887
Q ss_pred CcccccCC-CCCcCCCCcceEEEeccCCccccc
Q 036801 347 CTNMEIFS-RGELSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 347 c~~l~~l~-~~~~~~~~L~~l~l~~~~~~~~~~ 378 (388)
++++.+. ..+.....|.++.+- ++.|.+
T Consensus 332 -N~it~~~~~aF~~~~~l~~l~l~---~Np~~C 360 (498)
T KOG4237|consen 332 -NQITTVAPGAFQTLFSLSTLNLL---SNPFNC 360 (498)
T ss_pred -CeeEEEecccccccceeeeeehc---cCcccC
Confidence 4565543 334455777777776 555554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.4e-09 Score=95.59 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=76.9
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
++.+|+.+.+.+|.. ...+-....+ .|++++.|||+++ -+..|-.-- .-+..+|+|+.|.++. +++...
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k--~~~~v~~LdLS~N-L~~nw~~v~------~i~eqLp~Le~LNls~-Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSK--ILPNVRDLDLSRN-LFHNWFPVL------KIAEQLPSLENLNLSS-NRLSNF 187 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhh--hCCcceeecchhh-hHHhHHHHH------HHHHhcccchhccccc-ccccCC
Confidence 455666666665532 2111111222 5666666666665 222221110 0044566666666665 334332
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELT 163 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~ 163 (388)
.... ....++.|+.|.+++| .++.- .. +.+...+|+|+.|.+..|... .+...+...++.|+.|+++++..+.
T Consensus 188 ~~s~-~~~~l~~lK~L~l~~C-Gls~k--~V--~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 188 ISSN-TTLLLSHLKQLVLNSC-GLSWK--DV--QWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred cccc-chhhhhhhheEEeccC-CCCHH--HH--HHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccc
Confidence 2221 2334666777777666 33210 00 112245666777766665321 2244455556666666666665554
Q ss_pred ccccchhHhhcCCCccEEEE
Q 036801 164 TILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 164 ~~~~~~~~~~~l~~L~~L~l 183 (388)
++..+ .+..++.|..|.+
T Consensus 261 ~~~~~--~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 261 FDQGY--KVGTLPGLNQLNL 278 (505)
T ss_pred ccccc--ccccccchhhhhc
Confidence 11111 3445666666666
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=2.5e-09 Score=98.97 Aligned_cols=146 Identities=16% Similarity=0.039 Sum_probs=76.5
Q ss_pred CCCcccEEeEecCCCCcc---cccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRC---LFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKL 80 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~---~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 80 (388)
.+.+|+.|.+++|..... ..+..+. ..+++++++++++. +...+.. .......+..+++|+.|++.+++ +
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~---~~~~l~~l~l~~~~-~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~-~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALR---PQPSLKELCLSLNE-TGRIPRG--LQSLLQGLTKGCGLQELDLSDNA-L 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHh---hCCCceEEeccccc-cCCcchH--HHHHHHHHHhcCceeEEEccCCC-C
Confidence 456799999999763111 1133333 67789999998873 2211110 00001114568899999999864 4
Q ss_pred ccccCCCcccccC---CCccEEEeecCCCceEecccccCCcccccc-CCccEEEEeecCccccc-cccch--hhccCccE
Q 036801 81 TSFSTGDVHMLEF---PSLKELWISRCPGFMVKFKRTTNDLTKKVF-PNLEELIVDAKYITTNK-FLFSK--DLLCKLKC 153 (388)
Q Consensus 81 ~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~~~~-~~lp~--~~l~~L~~ 153 (388)
....... +..+ ++|++|++++|. +......... .....+ ++|+.|++.+|.+.... ..++. ..+++|++
T Consensus 94 ~~~~~~~--~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 94 GPDGCGV--LESLLRSSSLQELKLNNNG-LGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169 (319)
T ss_pred ChhHHHH--HHHHhccCcccEEEeeCCc-cchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence 3211111 2223 559999999984 4321111000 001244 78888888887763110 01111 12345666
Q ss_pred eeccccc
Q 036801 154 LDVEFVD 160 (388)
Q Consensus 154 L~l~~~~ 160 (388)
|+++++.
T Consensus 170 L~l~~n~ 176 (319)
T cd00116 170 LNLANNG 176 (319)
T ss_pred EECcCCC
Confidence 6666543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.9e-09 Score=93.88 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=124.8
Q ss_pred ccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801 31 SSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK 110 (388)
Q Consensus 31 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 110 (388)
+++.+|+.+.|+++ .+......++ ...|++++.|+++.. -+.+|....-.+..+|+|++|+++.+. +...
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~-------~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEY-------SKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNF 187 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhh-------hhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCC
Confidence 37889999999998 3554443222 668999999999863 233332211014569999999998873 3222
Q ss_pred cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL 190 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 190 (388)
..+. .+..+++|..|.++.|.+...-..--...+|+|+.|.+..+.... .......-+..|+.|+++.|.+
T Consensus 188 ~~s~----~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdLs~N~l-- 258 (505)
T KOG3207|consen 188 ISSN----TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDLSNNNL-- 258 (505)
T ss_pred cccc----chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccccCCcc--
Confidence 1111 124678999999999987421111122348999999999874332 1112334567899999954444
Q ss_pred CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc-cccCCC-----CCCCCCcCEEEEecCCCcee
Q 036801 191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL-INLVPS-----STSFQNLTTLEISHCNGLKN 264 (388)
Q Consensus 191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l-~~l~~~-----~~~~~~L~~L~l~~c~~l~~ 264 (388)
-.++.+ ...+.++.|..|+++.|..- -..|+. ...|++|++|.+.. +++.+
T Consensus 259 --i~~~~~--------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~ 315 (505)
T KOG3207|consen 259 --IDFDQG--------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRD 315 (505)
T ss_pred --cccccc--------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Ccccc
Confidence 111110 34456677777777776321 112222 24677888888875 45555
Q ss_pred ecchhhhhccCccCEEee
Q 036801 265 VLTFLIAKTLVRLREMKI 282 (388)
Q Consensus 265 ~~~~~~~~~~~~L~~L~l 282 (388)
++...-...+++|+.|.+
T Consensus 316 w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccchhhccchhhhhhc
Confidence 554333345566666654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=1.3e-07 Score=78.63 Aligned_cols=130 Identities=21% Similarity=0.187 Sum_probs=41.6
Q ss_pred cccccceeeccccccccEeeecccccccccccc-cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIV-IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK 110 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 110 (388)
+...+++|+|+++ .+..+.. ++ .+.+|+.|+++++ .++.+.. +..++.|+.|+++++ .++.+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~----------L~~~l~~L~~L~Ls~N-~I~~l~~----l~~L~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIEN----------LGATLDKLEVLDLSNN-QITKLEG----LPGLPRLKTLDLSNN-RISSI 79 (175)
T ss_dssp --------------------S------------TT-TT--EEE-TTS---S--TT--------TT--EEE--SS----S-
T ss_pred ccccccccccccc-ccccccc----------hhhhhcCCCEEECCCC-CCccccC----ccChhhhhhcccCCC-CCCcc
Confidence 3445677777776 3444321 22 4566777777653 4555532 224677777777766 44444
Q ss_pred cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
..... ..+|+|++|.+++|.+..--...+...+++|+.|++.+++..........++..+|+|+.|+-
T Consensus 80 ~~~l~-----~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 80 SEGLD-----KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp CHHHH-----HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccchH-----HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 22111 246777777777766532111124455777777777776544312234457778888888775
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=9.3e-08 Score=79.41 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=51.6
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
+..+++.|++.|+ .++.+ +.++. .+.+|+.|++++| .++.+.. +..+++|+.|++.+ +.+.++
T Consensus 17 n~~~~~~L~L~~n-~I~~I--e~L~~--~l~~L~~L~Ls~N-~I~~l~~----------l~~L~~L~~L~L~~-N~I~~i 79 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTI--ENLGA--TLDKLEVLDLSNN-QITKLEG----------LPGLPRLKTLDLSN-NRISSI 79 (175)
T ss_dssp ----------------------S--T--T-TT--EEE-TTS---S--TT--------------TT--EEE--S-S---S-
T ss_pred ccccccccccccc-ccccc--cchhh--hhcCCCEEECCCC-CCccccC----------ccChhhhhhcccCC-CCCCcc
Confidence 3456899999995 56654 44653 5889999999999 5766532 55789999999986 578877
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccccchhhccCccEeecccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFLFSKDLLCKLKCLDVEFVDE 161 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~lp~~~l~~L~~L~l~~~~~ 161 (388)
.... ...+|+|++|.++++ .+..+..-.. -..+++|+.|++.+|.+... ...+-...+|+|+.||-.....
T Consensus 80 ~~~l--~~~lp~L~~L~L~~N-~I~~l~~l~~----L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 80 SEGL--DKNLPNLQELYLSNN-KISDLNELEP----LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp CHHH--HHH-TT--EEE-TTS----SCCCCGG----GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred ccch--HHhCCcCCEEECcCC-cCCChHHhHH----HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 5431 235899999999887 5544322110 15789999999999877421 1123335589999999876543
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-08 Score=89.17 Aligned_cols=187 Identities=19% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccc
Q 036801 124 PNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVI 202 (388)
Q Consensus 124 ~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~ 202 (388)
..|++|++++..+..+-...-..-|++|+.|.+.+.. ++ +.+. ..+..-.+|+.+++ .|+.+ ++. +..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-Ld-D~I~-~~iAkN~~L~~lnlsm~sG~---t~n---~~~-- 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LD-DPIV-NTIAKNSNLVRLNLSMCSGF---TEN---ALQ-- 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cC-cHHH-HHHhccccceeecccccccc---chh---HHH--
Confidence 3577888877655321111122336788888887754 22 2222 24556678888888 77776 221 000
Q ss_pred cceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC--CCCCCcCEEEEecCCC-ceeecchhhhhccCccCE
Q 036801 203 IREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS--TSFQNLTTLEISHCNG-LKNVLTFLIAKTLVRLRE 279 (388)
Q Consensus 203 L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~L~~ 279 (388)
..+.+++.|.+|+++-|...+.....+ .--++|+.|.+++|.. +..-......+.+|+|.+
T Consensus 254 ----------------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 254 ----------------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred ----------------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 234577889999998886654433222 2345788889988743 222222335667899999
Q ss_pred EeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801 280 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN 349 (388)
Q Consensus 280 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 349 (388)
||+++|..++.-.... +..|+.|++|+++.|..+..--.- .+.+.|+|.+|++.+|-.
T Consensus 318 LDLSD~v~l~~~~~~~-----------~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQE-----------FFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eccccccccCchHHHH-----------HHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccccC
Confidence 9999998776532211 346899999999999764422111 125679999999988763
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-08 Score=87.07 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=122.4
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
.|++|||++.. ++. ...... +..|.+|+.|.+.+. .+.+-.... ++.-.+|+.|+++.|..++......
T Consensus 186 Rlq~lDLS~s~-it~-stl~~i------Ls~C~kLk~lSlEg~-~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITV-STLHGI------LSQCSKLKNLSLEGL-RLDDPIVNT--IAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhHHhhcchhh-eeH-HHHHHH------HHHHHhhhhcccccc-ccCcHHHHH--HhccccceeeccccccccchhHHHH
Confidence 59999998741 211 110000 557899999999875 455433222 5567899999999998887654432
Q ss_pred cCCccccccCCccEEEEeecCccccccc-cchhhccCccEeeccccccc-cccccchhHhhcCCCccEEEE-EeccCCCC
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFL-FSKDLLCKLKCLDVEFVDEL-TTILSLDDFLQRFHTLKVLQI-EGYNYWLP 191 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~-lp~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~ 191 (388)
. -.++..|..|++++|...+.... .....-++|+.|+++++... .++.+ +-..+.+++|..|++ +|..+
T Consensus 255 l----~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l--- 326 (419)
T KOG2120|consen 255 L----LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVML--- 326 (419)
T ss_pred H----HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeecccccccc---
Confidence 2 26889999999999987543322 22234679999999987642 21111 124678999999999 77766
Q ss_pred ceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc-cCCCCCCCCCcCEEEEecC
Q 036801 192 KEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN-LVPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c 259 (388)
+. +.+ +.+-.++-|++|.+++|..+.. ..-.+...|.|.+|++.+|
T Consensus 327 ~~----~~~------------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KN----DCF------------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred Cc----hHH------------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 32 111 3444678899999999977631 1234577889999999887
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=5.8e-06 Score=56.14 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=16.3
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC 104 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 104 (388)
.+++|++|++++ ++++.+++.. +..+++|+.|++++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~--f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDA--FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTT--TTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHH--HcCCCCCCEEeCcCC
Confidence 344444444443 2344444432 344444444444443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=5.9e-06 Score=56.13 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=50.2
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccc
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL 77 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 77 (388)
|+|++|++++| .++.+++.+|. ++++|++|++++| .+..++... +..+++|++|++.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~---~l~~L~~L~l~~N-~l~~i~~~~--------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS---NLPNLETLDLSNN-NLTSIPPDA--------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT---TGTTESEEEETSS-SESEEETTT--------TTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc---CCCCCCEeEccCC-ccCccCHHH--------HcCCCCCCEEeCcCC
Confidence 68999999996 78888777788 8999999999988 678877652 678999999999875
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.98 E-value=7.4e-06 Score=78.29 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=99.2
Q ss_pred cccccceeeccccccccEeeeccccccccccccccc-ccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP-RLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK 110 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 110 (388)
.++.++.|++.++ .+.+++.. ...+. +|+.|++.+ +.++.++.. ...+++|+.|++.+| .+..+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~---------~~~~~~nL~~L~l~~-N~i~~l~~~---~~~l~~L~~L~l~~N-~l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL---------IGLLKSNLKELDLSD-NKIESLPSP---LRNLPNLKNLDLSFN-DLSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc---------cccchhhcccccccc-cchhhhhhh---hhccccccccccCCc-hhhhh
Confidence 4556777777666 45555554 33442 777777775 456665322 345777777777776 55545
Q ss_pred cccccCCccccccCCccEEEEeecCccccccccchh--hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
+... ...++|+.|+++++.+ ..+|.. ....|+++.++++.... .+. .+..+.++..+.+..+.+
T Consensus 179 ~~~~------~~~~~L~~L~ls~N~i----~~l~~~~~~~~~L~~l~~~~N~~~~---~~~-~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 179 PKLL------SNLSNLNNLDLSGNKI----SDLPPEIELLSALEELDLSNNSIIE---LLS-SLSNLKNLSGLELSNNKL 244 (394)
T ss_pred hhhh------hhhhhhhheeccCCcc----ccCchhhhhhhhhhhhhhcCCccee---cch-hhhhcccccccccCCcee
Confidence 4432 1567777777777766 556664 44557777777764332 111 345555555555533443
Q ss_pred CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801 189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 259 (388)
.. ++ ..+..+++++.|+++++ .+..++. +....+++.+++++.
T Consensus 245 ---~~-~~----------------------~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 245 ---ED-LP----------------------ESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ---ee-cc----------------------chhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 11 01 44445666777777665 4455544 666677777777653
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=7.3e-07 Score=87.36 Aligned_cols=139 Identities=19% Similarity=0.123 Sum_probs=62.4
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccc-ccccccc--CCCcccccCCCccEEEeecCCCce
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL-EKLTSFS--TGDVHMLEFPSLKELWISRCPGFM 108 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~ 108 (388)
.+++|+.|.+.+|..+...... +....+++|+.|++.++ ......+ ... ....+++|+.|++.+|..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD-------ALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHH-------HHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhhccC
Confidence 3555666666665444441100 00334566666666542 1111111 000 12335666666666665444
Q ss_pred EecccccCCccccccCCccEEEEeecCccc-cccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 109 VKFKRTTNDLTKKVFPNLEELIVDAKYITT-NKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 109 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~-~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
+...... ...+++|+.|.+.+|..++ .....-...+++|++|++++|..+. +........++++|+.|.+
T Consensus 258 d~~l~~l----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 258 DIGLSAL----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-DSGLEALLKNCPNLRELKL 328 (482)
T ss_pred chhHHHH----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-HHHHHHHHHhCcchhhhhh
Confidence 3222211 1235566666655544211 1011111235667777777666654 2222223555666666665
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.93 E-value=5.3e-07 Score=88.33 Aligned_cols=120 Identities=21% Similarity=0.157 Sum_probs=78.7
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecC-CCceEecccccCCccccccCCccEEEEeecCccccc-cc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC-PGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FL 142 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~ 142 (388)
.++.|+.|.+.+|..+....... ....+++|+.|++++| ......+... ......+++|+.+++..+..++.. ..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHH
Confidence 47999999999888777632111 1457999999999884 3322222111 012256789999999987743221 11
Q ss_pred cchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccC
Q 036801 143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNY 188 (388)
Q Consensus 143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l 188 (388)
.-...+++|+.|.+..|..++ +.........+++|+.|++ .|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhhCCCcceEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence 122338899999988888665 4444457778899999999 77665
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.83 E-value=4.5e-06 Score=73.34 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=51.4
Q ss_pred ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCcc
Q 036801 148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNL 227 (388)
Q Consensus 148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L 227 (388)
++.|++++++++..-. +. ..++-.|.++.|+++.|.+ ..+ +.+..+++|
T Consensus 283 Wq~LtelDLS~N~I~~---iD-ESvKL~Pkir~L~lS~N~i---~~v------------------------~nLa~L~~L 331 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ---ID-ESVKLAPKLRRLILSQNRI---RTV------------------------QNLAELPQL 331 (490)
T ss_pred Hhhhhhccccccchhh---hh-hhhhhccceeEEeccccce---eee------------------------hhhhhcccc
Confidence 4456666666543222 21 2455566666666654554 211 334455666
Q ss_pred ceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecc
Q 036801 228 VILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIES 284 (388)
Q Consensus 228 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 284 (388)
++|+++++ .+..+..|-..+-+.++|.+++ +.++++.. .+.+=+|..|++++
T Consensus 332 ~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG---L~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 332 QLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETLSG---LRKLYSLVNLDLSS 383 (490)
T ss_pred eEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhhhh---hHhhhhheeccccc
Confidence 66666654 3444444445555666666654 23443322 23445566666644
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=8.9e-05 Score=69.45 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=27.3
Q ss_pred CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801 225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT 289 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 289 (388)
++++.|++++| .++.+|. -..+|+.|.+++|.++..+|.. -.++|+.|.+.+|..+.
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch----hhhhhhheEccCccccc
Confidence 45555555555 4444431 1224555555555555444431 12355555555554443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.74 E-value=2.4e-05 Score=74.75 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=124.7
Q ss_pred CCCcccEEeEecCCCCccccccccccccccc-ccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFV-RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
.+..++.|.+.+ ..++++ +...+ .++ +|++|++.++ .+..++.. +..+++|+.|++..+ .+.+
T Consensus 114 ~~~~l~~L~l~~-n~i~~i-~~~~~---~~~~nL~~L~l~~N-~i~~l~~~---------~~~l~~L~~L~l~~N-~l~~ 177 (394)
T COG4886 114 ELTNLTSLDLDN-NNITDI-PPLIG---LLKSNLKELDLSDN-KIESLPSP---------LRNLPNLKNLDLSFN-DLSD 177 (394)
T ss_pred cccceeEEecCC-cccccC-ccccc---cchhhccccccccc-chhhhhhh---------hhccccccccccCCc-hhhh
Confidence 345688888886 456666 44455 453 8999999998 57776533 678999999999974 6888
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~ 162 (388)
++.. ....++|+.|+++++ .+..++... ....+|+++.+.++.... ...+...+.++..+.+......
T Consensus 178 l~~~---~~~~~~L~~L~ls~N-~i~~l~~~~------~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 178 LPKL---LSNLSNLNNLDLSGN-KISDLPPEI------ELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhhh---hhhhhhhhheeccCC-ccccCchhh------hhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceee
Confidence 8765 335899999999988 777776653 244559999999885310 2223455777777776655433
Q ss_pred cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
. ++ ..+..+++++.|++.++.+ ..+ ..+..+.+++.|++.+......
T Consensus 246 ~---~~-~~~~~l~~l~~L~~s~n~i---~~i------------------------~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 246 D---LP-ESIGNLSNLETLDLSNNQI---SSI------------------------SSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred e---cc-chhccccccceeccccccc---ccc------------------------ccccccCccCEEeccCcccccc
Confidence 2 12 3677889999999977776 221 3356778999999988754443
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.69 E-value=1.9e-06 Score=81.72 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=84.3
Q ss_pred cccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeec
Q 036801 24 SSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISR 103 (388)
Q Consensus 24 p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 103 (388)
|..++ .+..|.+|+|+.+ ++..++.. +..|| |+.|-+.+ +++..++.+ ++..+.|..|+.+.
T Consensus 114 p~~i~---~L~~lt~l~ls~N-qlS~lp~~---------lC~lp-Lkvli~sN-Nkl~~lp~~---ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 114 PEAIC---NLEALTFLDLSSN-QLSHLPDG---------LCDLP-LKVLIVSN-NKLTSLPEE---IGLLPTLAHLDVSK 175 (722)
T ss_pred chhhh---hhhHHHHhhhccc-hhhcCChh---------hhcCc-ceeEEEec-CccccCCcc---cccchhHHHhhhhh
Confidence 55566 5666666666665 45555544 32333 66666654 566666655 44667777777776
Q ss_pred CCCceEecccccCCccccccCCccEEEEeecCccccccccchhhcc-CccEeeccccccccccccchhHhhcCCCccEEE
Q 036801 104 CPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLC-KLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQ 182 (388)
Q Consensus 104 c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 182 (388)
| .+..+++.. ..+.+|+.|.+..|.. ..+|...+. .|.+||+++++... +|. .+..|..|++|.
T Consensus 176 n-ei~slpsql------~~l~slr~l~vrRn~l----~~lp~El~~LpLi~lDfScNkis~---iPv-~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 176 N-EIQSLPSQL------GYLTSLRDLNVRRNHL----EDLPEELCSLPLIRLDFSCNKISY---LPV-DFRKMRHLQVLQ 240 (722)
T ss_pred h-hhhhchHHh------hhHHHHHHHHHhhhhh----hhCCHHHhCCceeeeecccCceee---cch-hhhhhhhheeee
Confidence 6 555555555 3667777777777766 566665433 67788888765433 565 677888888888
Q ss_pred EEeccC
Q 036801 183 IEGYNY 188 (388)
Q Consensus 183 l~~~~l 188 (388)
+.||-+
T Consensus 241 LenNPL 246 (722)
T KOG0532|consen 241 LENNPL 246 (722)
T ss_pred eccCCC
Confidence 877666
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.69 E-value=4.2e-06 Score=79.51 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=117.3
Q ss_pred cccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeec
Q 036801 24 SSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISR 103 (388)
Q Consensus 24 p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 103 (388)
|..+. .|..|+.+.+..+ .+..++.. +.++..|++|+|+. +.+..++.. +..+ -|+.|.+++
T Consensus 91 p~~~~---~f~~Le~liLy~n-~~r~ip~~---------i~~L~~lt~l~ls~-NqlS~lp~~---lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 91 PEEAC---AFVSLESLILYHN-CIRTIPEA---------ICNLEALTFLDLSS-NQLSHLPDG---LCDL-PLKVLIVSN 152 (722)
T ss_pred chHHH---HHHHHHHHHHHhc-cceecchh---------hhhhhHHHHhhhcc-chhhcCChh---hhcC-cceeEEEec
Confidence 55555 5667777777655 45555555 66788888888875 457766665 2333 388888876
Q ss_pred CCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccccccccccchhHhhcCCCccEE
Q 036801 104 CPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVL 181 (388)
Q Consensus 104 c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 181 (388)
+ +++.+|.+. ...+.|..|+.+.|++ ..+|. +.+.+|+.|.+..++-.. +|. .+. .-.|.+|
T Consensus 153 N-kl~~lp~~i------g~~~tl~~ld~s~nei----~slpsql~~l~slr~l~vrRn~l~~---lp~-El~-~LpLi~l 216 (722)
T KOG0532|consen 153 N-KLTSLPEEI------GLLPTLAHLDVSKNEI----QSLPSQLGYLTSLRDLNVRRNHLED---LPE-ELC-SLPLIRL 216 (722)
T ss_pred C-ccccCCccc------ccchhHHHhhhhhhhh----hhchHHhhhHHHHHHHHHhhhhhhh---CCH-HHh-CCceeee
Confidence 6 777777776 3778888888888887 55555 457888888888876554 555 333 4467888
Q ss_pred EEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC---CCCCCcCEEEEec
Q 036801 182 QIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS---TSFQNLTTLEISH 258 (388)
Q Consensus 182 ~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~~~~L~~L~l~~ 258 (388)
+++||++ ..+| -.+..|+.|+.|.+.+++- ++-|..+ +..+=.++|.+..
T Consensus 217 DfScNki----s~iP----------------------v~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 217 DFSCNKI----SYLP----------------------VDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred ecccCce----eecc----------------------hhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchh
Confidence 8899888 4444 4556789999999987753 3222211 2333456666665
Q ss_pred C
Q 036801 259 C 259 (388)
Q Consensus 259 c 259 (388)
|
T Consensus 270 ~ 270 (722)
T KOG0532|consen 270 C 270 (722)
T ss_pred c
Confidence 5
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00019 Score=67.28 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+.++++|++++| .++.+ |. --.+|++|.+++|..++.++.. + .++|++|.+.+|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P~------LP~sLtsL~Lsnc~nLtsLP~~---------L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-PV------LPNELTEITIENCNNLTTLPGS---------I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-CC------CCCCCcEEEccCCCCcccCCch---------h--hhhhhheEccCccccccc
Confidence 4678889999987 56655 41 1235889999888877766543 1 357888888887666544
Q ss_pred cCCCcccccCCCccEEEeec
Q 036801 84 STGDVHMLEFPSLKELWISR 103 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~ 103 (388)
.++|+.|++.+
T Consensus 111 ---------P~sLe~L~L~~ 121 (426)
T PRK15386 111 ---------PESVRSLEIKG 121 (426)
T ss_pred ---------ccccceEEeCC
Confidence 34466666653
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=2.5e-05 Score=78.85 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=89.3
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
.+|++|+++|...+..--|..+|. -||+|++|.+.+-.-..+ +. .+-...||+|++|++++. +++++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~---dF-----~~lc~sFpNL~sLDIS~T-nI~nl~- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDND---DF-----SQLCASFPNLRSLDISGT-NISNLS- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhh--hCcccceEEecCceecch---hH-----HHHhhccCccceeecCCC-CccCcH-
Confidence 578888988865554444445666 789999998877421111 00 011557899999999885 566662
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccc--ccc-c-ch-hhccCccEeeccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTN--KFL-F-SK-DLLCKLKCLDVEFVD 160 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~--~~~-l-p~-~~l~~L~~L~l~~~~ 160 (388)
+ +..+++|+.|.+.+..-......... -.+++|+.|||+....... +.. . .. ..+|+|+.||.++..
T Consensus 190 G---IS~LknLq~L~mrnLe~e~~~~l~~L-----F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 190 G---ISRLKNLQVLSMRNLEFESYQDLIDL-----FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred H---HhccccHHHHhccCCCCCchhhHHHH-----hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 2 45788888888765422211100111 3688899999987433211 111 1 11 237888888888754
Q ss_pred cccccccchhHhhcCCCccEEEE
Q 036801 161 ELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 161 ~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
--. . +....+..-++|+.+..
T Consensus 262 i~~-~-~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 262 INE-E-ILEELLNSHPNLQQIAA 282 (699)
T ss_pred hhH-H-HHHHHHHhCccHhhhhh
Confidence 322 2 22223444555655443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.21 E-value=0.00043 Score=69.99 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=59.0
Q ss_pred cceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCce-Eecccc
Q 036801 36 LQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFM-VKFKRT 114 (388)
Q Consensus 36 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~ 114 (388)
++.|+|.++.-...++.. +..+++|+.|++.++ .+....+.. +..+++|+.|++++| .+. .+|...
T Consensus 420 v~~L~L~~n~L~g~ip~~---------i~~L~~L~~L~Ls~N-~l~g~iP~~--~~~l~~L~~LdLs~N-~lsg~iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND---------ISKLRHLQSINLSGN-SIRGNIPPS--LGSITSLEVLDLSYN-SFNGSIPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHH---------HhCCCCCCEEECCCC-cccCcCChH--HhCCCCCCEEECCCC-CCCCCCchHH
Confidence 667777776332233332 556777777777764 455433332 556777777777776 343 333333
Q ss_pred cCCccccccCCccEEEEeecCccccccccchhh---ccCccEeeccccc
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL---LCKLKCLDVEFVD 160 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~---l~~L~~L~l~~~~ 160 (388)
..+++|+.|++++|... ..+|... ..++..+++.++.
T Consensus 487 ------~~L~~L~~L~Ls~N~l~---g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 487 ------GQLTSLRILNLNGNSLS---GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ------hcCCCCCEEECcCCccc---ccCChHHhhccccCceEEecCCc
Confidence 46777777777776653 3344432 2355566666554
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.00024 Score=62.74 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH 300 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 300 (388)
..-.|.++.|+++.+. +..+ ..++.+++|..|++++. .+..... +-..+.+.++|.+.. +.++.+.+
T Consensus 303 vKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~G--wh~KLGNIKtL~La~-N~iE~LSG------- 369 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLDLSGN-LLAECVG--WHLKLGNIKTLKLAQ-NKIETLSG------- 369 (490)
T ss_pred hhhccceeEEeccccc-eeee-hhhhhcccceEeecccc-hhHhhhh--hHhhhcCEeeeehhh-hhHhhhhh-------
Confidence 3345677777777653 2222 23556667777777652 3332221 222455667776643 33443322
Q ss_pred cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCc
Q 036801 301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 348 (388)
...+=+|..|++.+. +++.+....-.+++|+|+++.+.+.|
T Consensus 370 ------L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 ------LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 123456666666663 34444322112567777777776644
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.13 E-value=3.6e-05 Score=69.10 Aligned_cols=257 Identities=14% Similarity=0.116 Sum_probs=135.3
Q ss_pred cCCCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecccccc---cccccccccccceEeccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMDNQEE---DRNNIVIFPRLQYLKMYDLE 78 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~ 78 (388)
..+..++.++++|+..-+ ....+++.. .+.++|+..++++. ....+.....++ -.+.+-.+|+|++|++++.
T Consensus 27 ~~~~s~~~l~lsgnt~G~-EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN- 102 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGT-EAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN- 102 (382)
T ss_pred cccCceEEEeccCCchhH-HHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-
Confidence 456788999999975332 223333320 16778999999886 333333221000 0111446789999999984
Q ss_pred cccc-ccCCC-cccccCCCccEEEeecCCCceEecccccCC--------ccccccCCccEEEEeecCccccccccch---
Q 036801 79 KLTS-FSTGD-VHMLEFPSLKELWISRCPGFMVKFKRTTND--------LTKKVFPNLEELIVDAKYITTNKFLFSK--- 145 (388)
Q Consensus 79 ~l~~-~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--------~~~~~l~~L~~L~i~~~~~~~~~~~lp~--- 145 (388)
.+.. -+++. -.+.++..|+.|.+.+|. +.......... .-...-++|+.+...+|..-........
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 3332 11110 024568999999999884 32111111000 0114567899999988876211111111
Q ss_pred hhccCccEeeccccccccc-cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC
Q 036801 146 DLLCKLKCLDVEFVDELTT-ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM 224 (388)
Q Consensus 146 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l 224 (388)
...+.|+.+.+..+..... .......+.+++.|++|++..|-+ +..-+..+. ..++.+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf---t~egs~~La------------------kaL~s~ 240 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF---TLEGSVALA------------------KALSSW 240 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh---hhHHHHHHH------------------HHhccc
Confidence 1235677776665443220 112233567788888888844444 111111000 455567
Q ss_pred CccceEEecCCcccc----ccCCCC-CCCCCcCEEEEecCCCceeecch---hhhhccCccCEEeecccc
Q 036801 225 DNLVILRVSSCHHLI----NLVPSS-TSFQNLTTLEISHCNGLKNVLTF---LIAKTLVRLREMKIESCA 286 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~----~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~l~~c~ 286 (388)
++|++|++.+|..-. .+...+ ...++|+.+.+.++. ++.-... ......|.|++|++.+|.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 788888888883321 111111 356788888887653 3221111 011236777888776653
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.00 E-value=7e-05 Score=67.31 Aligned_cols=259 Identities=17% Similarity=0.104 Sum_probs=130.2
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEeccccc----------ccccccCCCcccccCCCccEEEe
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE----------KLTSFSTGDVHMLEFPSLKELWI 101 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~l~~~~~~~~~~~~~~~L~~L~l 101 (388)
.+..++.|+|+++. +.. +. ..+.-..+.+.+.|+..++++.- .+..+... ...+|.|+++++
T Consensus 28 ~~~s~~~l~lsgnt-~G~---EA-a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a---L~~~~~L~~ldL 99 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-FGT---EA-ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKA---LLGCPKLQKLDL 99 (382)
T ss_pred ccCceEEEeccCCc-hhH---HH-HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHH---HhcCCceeEeec
Confidence 68889999999983 111 00 00111114566788888887641 11112222 334789999999
Q ss_pred ecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh-ccCccEeeccccccccccccchhHhhcCCCccE
Q 036801 102 SRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL-LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKV 180 (388)
Q Consensus 102 ~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 180 (388)
+++.-=...+... +.+...+..|++|.+.+|.+- ..--+. -..|..|.... -+..-+.|++
T Consensus 100 SDNA~G~~g~~~l--~~ll~s~~~L~eL~L~N~Glg----~~ag~~l~~al~~l~~~k------------k~~~~~~Lrv 161 (382)
T KOG1909|consen 100 SDNAFGPKGIRGL--EELLSSCTDLEELYLNNCGLG----PEAGGRLGRALFELAVNK------------KAASKPKLRV 161 (382)
T ss_pred cccccCccchHHH--HHHHHhccCHHHHhhhcCCCC----hhHHHHHHHHHHHHHHHh------------ccCCCcceEE
Confidence 9983211111110 122356899999999999872 221111 12333333111 1233556777
Q ss_pred EEEEeccCCCCceeec-CccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----cccCCCCCCCCCcCEEE
Q 036801 181 LQIEGYNYWLPKEKVE-NGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INLVPSSTSFQNLTTLE 255 (388)
Q Consensus 181 L~l~~~~l~~~~~~~~-~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~ 255 (388)
+..+.|.+ ...+ .... ..+...+.|+.+.++.+..- +.+...+.++++|++|+
T Consensus 162 ~i~~rNrl----en~ga~~~A------------------~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd 219 (382)
T KOG1909|consen 162 FICGRNRL----ENGGATALA------------------EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD 219 (382)
T ss_pred EEeecccc----ccccHHHHH------------------HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee
Confidence 66655555 1111 0000 23334466777776654321 22223456777777777
Q ss_pred EecCCCceeecchh---hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc----ceec
Q 036801 256 ISHCNGLKNVLTFL---IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL----RSFY 328 (388)
Q Consensus 256 l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l----~~l~ 328 (388)
+.+. .++.-.... ..+.+++|++|++.+|..-.+-..... ..+. -..|+|+.|.+.++.-- ..+.
T Consensus 220 l~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~----~al~---~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 220 LRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV----DALK---ESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred cccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHH----HHHh---ccCCCCceeccCcchhHHHHHHHHH
Confidence 7652 222211111 234567778888877742211100000 0000 12578888888776321 1111
Q ss_pred cCcccccCCCcceEeccCCc
Q 036801 329 SGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~c~ 348 (388)
..+ ...|.|++|.+++|.
T Consensus 292 ~~~--~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 292 ACM--AEKPDLEKLNLNGNR 309 (382)
T ss_pred HHH--hcchhhHHhcCCccc
Confidence 112 336888888888764
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.87 E-value=0.0011 Score=41.50 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=27.7
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEe
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEEL 50 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~ 50 (388)
++|++|+++++ .++++ |..++ ++++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l-~~~l~---~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL-PPELS---NLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSH-GGHGT---TCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCccc-CchHh---CCCCCCEEEecCC-CCCCC
Confidence 57889999885 56666 44577 7999999999988 45554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00022 Score=62.93 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=43.0
Q ss_pred cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhH
Q 036801 92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDF 171 (388)
Q Consensus 92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~ 171 (388)
.+..++.+++.++ .++.+... +.+-+++|.|+.|+++.|.....|..+| --..+|+.|-+.+.. +. -......
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~-L~-w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTG-LS-WTQSTSS 141 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHH---HHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCC-CC-hhhhhhh
Confidence 3566777777665 44333211 1223567777777777766655555555 224466666555422 11 0011123
Q ss_pred hhcCCCccEEEEE
Q 036801 172 LQRFHTLKVLQIE 184 (388)
Q Consensus 172 ~~~l~~L~~L~l~ 184 (388)
+..+|.++.|.++
T Consensus 142 l~~lP~vtelHmS 154 (418)
T KOG2982|consen 142 LDDLPKVTELHMS 154 (418)
T ss_pred hhcchhhhhhhhc
Confidence 4455556665553
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.70 E-value=0.00063 Score=68.96 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=19.3
Q ss_pred ccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 148 LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 148 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
-.+|++|++++...+. ...+......+|+|++|.+
T Consensus 121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i 155 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVI 155 (699)
T ss_pred HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEe
Confidence 3466666666554444 4444445555666666666
No 52
>PLN03150 hypothetical protein; Provisional
Probab=96.64 E-value=0.004 Score=63.01 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
+..+++|+.|++++|.....+|..+..+++|+.|+++++.--..+|. ....+++|+.|+++++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEEECcCC
Confidence 33445555555555533334444455555555555554322222222 1234555555555443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.55 E-value=7e-05 Score=73.47 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCH 45 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~ 45 (388)
+++++.|.+-....-....|-.|. .|.+||+|.+.+|+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~if---pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIF---PFRSLRVLELRGCD 120 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceec---cccceeeEEecCcc
Confidence 456666666655443322355677 68889999999985
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.34 E-value=0.0052 Score=38.36 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=25.1
Q ss_pred CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801 225 DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL 266 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 266 (388)
++|++|+++++ .++++++.+..+++|+.|+++++ .+.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 35777777776 55666665677777777777765 455443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.001 Score=58.83 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=29.8
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.+..++.+++.+ +.+.+|.........+|.|+.|+++.++.-..+ +..|-...+|+.|.+.+...
T Consensus 69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I------~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI------KSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc------ccCcccccceEEEEEcCCCC
Confidence 345566666655 344444322111345666666666544221111 12222344566666655443
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.27 E-value=0.00091 Score=64.33 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=58.5
Q ss_pred cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
+..+.+|+.|++.+ ++++.+... ...+++|++|+++++ .++.+..- ..++.|+.|++.+|.+. .
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~---l~~~~~L~~L~ls~N-~I~~i~~l-------~~l~~L~~L~l~~N~i~----~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENL---LSSLVNLQVLDLSFN-KITKLEGL-------STLTLLKELNLSGNLIS----D 154 (414)
T ss_pred cccccceeeeeccc-cchhhcccc---hhhhhcchheecccc-ccccccch-------hhccchhhheeccCcch----h
Confidence 45667777777765 455555441 224777777777766 44433222 34555777777776652 2
Q ss_pred cch-hhccCccEeeccccccccccccch-hHhhcCCCccEEEEEeccC
Q 036801 143 FSK-DLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 143 lp~-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l 188 (388)
+.. ..+.+|+.++++++.... +.. . ...+.+++.+.+..+.+
T Consensus 155 ~~~~~~l~~L~~l~l~~n~i~~---ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 155 ISGLESLKSLKLLDLSYNRIVD---IENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCccchhhhcccCCcchhhh---hhhhh-hhhccchHHHhccCCch
Confidence 221 226677777777665433 111 1 35566677666644444
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.22 E-value=0.00028 Score=69.40 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=63.8
Q ss_pred ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801 33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK 112 (388)
Q Consensus 33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 112 (388)
++.|+.|+|++| +++... ++..|++|+.|++.. +.+..++... ...+. |+.|.++++ .++.+..
T Consensus 186 l~ale~LnLshN-k~~~v~----------~Lr~l~~LkhLDlsy-N~L~~vp~l~--~~gc~-L~~L~lrnN-~l~tL~g 249 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD----------NLRRLPKLKHLDLSY-NCLRHVPQLS--MVGCK-LQLLNLRNN-ALTTLRG 249 (1096)
T ss_pred HHHhhhhccchh-hhhhhH----------HHHhccccccccccc-chhccccccc--hhhhh-heeeeeccc-HHHhhhh
Confidence 456677777776 333322 155677777777764 4566665443 33344 777777766 3332211
Q ss_pred cccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccc
Q 036801 113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDE 161 (388)
Q Consensus 113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~ 161 (388)
. +++.+|+.|+++.|-+..-..-.|.+.+..|+.|++.++..
T Consensus 250 i-------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 I-------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred H-------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 1 57788888888776553211235667788888888887653
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.88 E-value=0.0014 Score=63.15 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=52.9
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|+.|++.++ +++.+... +..+++|++|++++ +.+.++.... .++.|+.|++.++ .+..+.
T Consensus 93 ~~~~l~~l~l~~n-~i~~i~~~---------l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N-~i~~~~ 156 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEKIENL---------LSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGN-LISDIS 156 (414)
T ss_pred cccceeeeecccc-chhhcccc---------hhhhhcchheeccc-cccccccchh----hccchhhheeccC-cchhcc
Confidence 5666666666665 34443331 23466666666664 4555543322 4555666666665 333332
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccc
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVD 160 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~ 160 (388)
.. ..+++|+.+++..+.+ ..+.. ..+.+++.+++.++.
T Consensus 157 ~~-------~~l~~L~~l~l~~n~i----~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 157 GL-------ESLKSLKLLDLSYNRI----VDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CC-------ccchhhhcccCCcchh----hhhhhhhhhhccchHHHhccCCc
Confidence 21 2355666666666555 22222 445566666666544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.82 E-value=0.01 Score=49.80 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=67.0
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+...++++++. +..+ ..+. +++.|..|.+.+| .+..+...- -..+|+|..|.+.+ +++..+...
T Consensus 43 ~~d~iDLtdNd-l~~l--~~lp---~l~rL~tLll~nN-rIt~I~p~L--------~~~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL--DNLP---HLPRLHTLLLNNN-RITRIDPDL--------DTFLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred ccceecccccc-hhhc--ccCC---CccccceEEecCC-cceeeccch--------hhhccccceEEecC-cchhhhhhc
Confidence 34556777643 3332 3345 7888999999888 566655441 22478899999987 466665432
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
. -...||.|++|.+-+++.-. ..-.. ..+...+|+|+.|+..+
T Consensus 107 ~-pLa~~p~L~~Ltll~Npv~~-k~~YR--~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 107 D-PLASCPKLEYLTLLGNPVEH-KKNYR--LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred c-hhccCCccceeeecCCchhc-ccCce--eEEEEecCcceEeehhh
Confidence 1 14568999999998875322 11110 11125789999999876
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.69 E-value=0.018 Score=48.24 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=17.5
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC 104 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 104 (388)
.++.|..|.+.. +.+..+.+.. ...+|+|+.|.+.++
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L--~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDL--DTFLPNLKTLILTNN 98 (233)
T ss_pred CccccceEEecC-Ccceeeccch--hhhccccceEEecCc
Confidence 344455555543 3444444442 334555555555544
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.00096 Score=55.71 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=58.3
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
.++.++-+++. + ++....++..++.++.|.+.+|..+.+++... ..+-.|+|+.|++++|+.+++--...
T Consensus 102 ~IeaVDAsds~-I--------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~-l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSS-I--------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLER-LGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCch-H--------HHHHHHHHhccchhhhheeccccchhhHHHHH-hcccccchheeeccCCCeechhHHHH
Confidence 36667766652 1 12223347788999999999998888877654 34468999999999999988543333
Q ss_pred cCCccccccCCccEEEEee
Q 036801 115 TNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~ 133 (388)
. ..+++|+.|.+.+
T Consensus 172 L-----~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 L-----LKLKNLRRLHLYD 185 (221)
T ss_pred H-----HHhhhhHHHHhcC
Confidence 2 4677777777766
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00044 Score=60.51 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=46.3
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+.+.+.|+.++| .+.+|.. +.+++.|++|.|+ .++++.+-+. ..|.+|++|.++.+ .+..+.
T Consensus 17 dl~~vkKLNcwg~-~L~DIsi----------c~kMp~lEVLsLS-vNkIssL~pl----~rCtrLkElYLRkN-~I~sld 79 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISI----------CEKMPLLEVLSLS-VNKISSLAPL----QRCTRLKELYLRKN-CIESLD 79 (388)
T ss_pred HHHHhhhhcccCC-CccHHHH----------HHhcccceeEEee-ccccccchhH----HHHHHHHHHHHHhc-ccccHH
Confidence 4666777777777 4555444 3467777777776 4566655332 25777777777665 333322
Q ss_pred ccccCCccccccCCccEEEEee
Q 036801 112 KRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
.-.+ -.++|+|+.|.+..
T Consensus 80 EL~Y----LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 80 ELEY----LKNLPSLRTLWLDE 97 (388)
T ss_pred HHHH----HhcCchhhhHhhcc
Confidence 1111 14556666666554
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.0017 Score=54.20 Aligned_cols=87 Identities=15% Similarity=0.277 Sum_probs=51.7
Q ss_pred ccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcccccc
Q 036801 226 NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD 305 (388)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 305 (388)
.++.++-+++.-...-...+..++.++.|.+.+|..+.+.....+....++|+.|+|++|+.|++-...-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---------- 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC---------- 171 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH----------
Confidence 3455555544322111123356677778888888877776655455556788888888887776553211
Q ss_pred ceecccccceeecccccc
Q 036801 306 EVIAFSKLNELRLLNLES 323 (388)
Q Consensus 306 ~~~~~~~L~~L~l~~c~~ 323 (388)
...|++|+.|.+.+++.
T Consensus 172 -L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 172 -LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred -HHHhhhhHHHHhcCchh
Confidence 12466777777766554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.95 E-value=0.17 Score=39.62 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=32.1
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
++++|+.+.+.. .++.+.... ...+.+|+.+.+.+ .+..+.... +..+++|+.+.+.+ .+..++
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~--------F~~~~~l~~i~~~~--~~~~i~~~~--F~~~~~l~~i~~~~--~~~~i~ 73 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENA--------FSNCTSLKSINFPN--NLTSIGDNA--FSNCKSLESITFPN--NLKSIG 73 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTT--------TTT-TT-SEEEESS--TTSCE-TTT--TTT-TT-EEEEETS--TT-EE-
T ss_pred CCCCCCEEEECC--CeeEeChhh--------cccccccccccccc--cccccceee--eecccccccccccc--cccccc
Confidence 455566666553 344443331 33455566666543 244444443 44455566666643 333344
Q ss_pred ccccCCccccccCCccEEEEee
Q 036801 112 KRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
...+ ..+++|+.+.+..
T Consensus 74 ~~~F-----~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 74 DNAF-----SNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-----TT-TTECEEEETT
T ss_pred cccc-----cccccccccccCc
Confidence 3333 3455666665543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.67 E-value=0.01 Score=51.63 Aligned_cols=113 Identities=24% Similarity=0.157 Sum_probs=60.9
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEeccccc-ccc-cccCCCcccccCCCccEEEeecCCCceE
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE-KLT-SFSTGDVHMLEFPSLKELWISRCPGFMV 109 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 109 (388)
.+..|+.|.+.++ .+..+.. +-.+|+|+.|.++... ++. .+.. .+..+|+|++|+++++ .+..
T Consensus 41 ~~~~le~ls~~n~-gltt~~~----------~P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~N-ki~~ 105 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTN----------FPKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSGN-KIKD 105 (260)
T ss_pred cccchhhhhhhcc-ceeeccc----------CCCcchhhhhcccCCccccccccee---hhhhCCceeEEeecCC-cccc
Confidence 5667777777665 3333222 3457788888887531 221 1211 2445688888888877 3322
Q ss_pred ecccccCCccccccCCccEEEEeecCccc--cccccchhhccCccEeecccccccc
Q 036801 110 KFKRTTNDLTKKVFPNLEELIVDAKYITT--NKFLFSKDLLCKLKCLDVEFVDELT 163 (388)
Q Consensus 110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~--~~~~lp~~~l~~L~~L~l~~~~~~~ 163 (388)
+..-.- ...+.+|..|++.+|.... .-..--...+++|+.|+-..+....
T Consensus 106 lstl~p----l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 106 LSTLRP----LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred ccccch----hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence 110000 0456777777777766521 0011122347788888877665443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.59 E-value=0.024 Score=49.45 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=65.5
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecC--CCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC--PGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
.+..|+.|.+.++ .+..+.. .-.+|+||+|.++.+ +....+... ...+|+|+++++++|.+-. +..
T Consensus 41 ~~~~le~ls~~n~-gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl------~e~~P~l~~l~ls~Nki~~-lst 108 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVL------AEKAPNLKVLNLSGNKIKD-LST 108 (260)
T ss_pred cccchhhhhhhcc-ceeeccc----CCCcchhhhhcccCCcccccccceeh------hhhCCceeEEeecCCcccc-ccc
Confidence 4566666666554 2333221 225789999999887 222222222 2567999999999988721 122
Q ss_pred c-chhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 143 F-SKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 143 l-p~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
+ |...+.+|..|++..|....-.......+..+++|+.|+-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 2 3345778889988887654311233456777888887776
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.49 E-value=0.24 Score=38.64 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
..++.+|+.+.+.. .++.+....|. .+++|+.+++.+ .+..+.... ...++.|+.+.+.+ .+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~---~~~~l~~i~~~~--~~~~i~~~~--------F~~~~~l~~i~~~~--~~~ 70 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFS---NCTSLKSINFPN--NLTSIGDNA--------FSNCKSLESITFPN--NLK 70 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTT---T-TT-SEEEESS--TTSCE-TTT--------TTT-TT-EEEEETS--TT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcc---cccccccccccc--cccccceee--------eecccccccccccc--ccc
Confidence 35677899999874 46667666666 788999999977 366665542 45677899999964 455
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
.+.... +..+++|+.+.+.. ++..+....+ ... +|+.+.+..
T Consensus 71 ~i~~~~--F~~~~~l~~i~~~~--~~~~i~~~~f-----~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNA--FSNCTNLKNIDIPS--NITEIGSSSF-----SNC-NLKEINIPS 112 (129)
T ss_dssp EE-TTT--TTT-TTECEEEETT--T-BEEHTTTT-----TT--T--EEE-TT
T ss_pred cccccc--ccccccccccccCc--cccEEchhhh-----cCC-CceEEEECC
Confidence 555553 55689999999864 4666766665 455 777777654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.0073 Score=53.10 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=60.4
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
+.+.+.|.+-|| +++++ . +.. .++.|++|.|+-| ++..+.. +..|.+|+.|+|.. +.+.++.
T Consensus 18 l~~vkKLNcwg~-~L~DI--s-ic~--kMp~lEVLsLSvN-kIssL~p----------l~rCtrLkElYLRk-N~I~sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--S-ICE--KMPLLEVLSLSVN-KISSLAP----------LQRCTRLKELYLRK-NCIESLD 79 (388)
T ss_pred HHHhhhhcccCC-CccHH--H-HHH--hcccceeEEeecc-ccccchh----------HHHHHHHHHHHHHh-cccccHH
Confidence 445566666665 34444 1 333 7888888888776 4544333 55788888888875 3555554
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEE
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELI 130 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~ 130 (388)
... ....+|+|++|.+..++....-... +.-.+...+|+|+.|+
T Consensus 80 EL~-YLknlpsLr~LWL~ENPCc~~ag~n-YR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 80 ELE-YLKNLPSLRTLWLDENPCCGEAGQN-YRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHH-HHhcCchhhhHhhccCCcccccchh-HHHHHHHHcccchhcc
Confidence 332 3456788888888777654322111 0001124567777776
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.44 E-value=0.01 Score=46.71 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=5.6
Q ss_pred ccCccEeecccc
Q 036801 148 LCKLKCLDVEFV 159 (388)
Q Consensus 148 l~~L~~L~l~~~ 159 (388)
++.|+.|+++.+
T Consensus 99 m~aLr~lNl~~N 110 (177)
T KOG4579|consen 99 MPALRSLNLRFN 110 (177)
T ss_pred hHHhhhcccccC
Confidence 444444444443
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.18 E-value=0.13 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=8.1
Q ss_pred CCcceEeccCCcccccCC
Q 036801 337 PSLERLLVDDCTNMEIFS 354 (388)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~ 354 (388)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356677777664 55544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.50 E-value=0.18 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=12.6
Q ss_pred CcceEeccCCcccccCCCCC
Q 036801 338 SLERLLVDDCTNMEIFSRGE 357 (388)
Q Consensus 338 ~L~~L~l~~c~~l~~l~~~~ 357 (388)
+|++|++++| +++.+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4677777776 666776654
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.21 E-value=0.052 Score=42.82 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=62.2
Q ss_pred ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801 8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD 87 (388)
Q Consensus 8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 87 (388)
+..++++.|... .+ +...-..+....|+.++|++| ..+.++... ...+|..+.|++.+ +.+.++|..
T Consensus 29 ~h~ldLssc~lm-~i-~davy~l~~~~el~~i~ls~N-~fk~fp~kf--------t~kf~t~t~lNl~~-neisdvPeE- 95 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YI-ADAVYMLSKGYELTKISLSDN-GFKKFPKKF--------TIKFPTATTLNLAN-NEISDVPEE- 95 (177)
T ss_pred hhhcccccchhh-HH-HHHHHHHhCCceEEEEecccc-hhhhCCHHH--------hhccchhhhhhcch-hhhhhchHH-
Confidence 345666666432 11 222111114556777888887 566655542 23567788888875 567777766
Q ss_pred cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
...+|.|+.|+++.++ +...+.... .+.++-.|+.-++..
T Consensus 96 --~Aam~aLr~lNl~~N~-l~~~p~vi~------~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 96 --LAAMPALRSLNLRFNP-LNAEPRVIA------PLIKLDMLDSPENAR 135 (177)
T ss_pred --HhhhHHhhhcccccCc-cccchHHHH------HHHhHHHhcCCCCcc
Confidence 5678888888888773 333333321 355666666655554
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.97 E-value=0.12 Score=45.52 Aligned_cols=205 Identities=14% Similarity=0.078 Sum_probs=102.6
Q ss_pred CCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecc-ccc--ccccccccccccceEeccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMD-NQE--EDRNNIVIFPRLQYLKMYDLEKL 80 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~l 80 (388)
+..++.++++|+...+ ....|++.+ .+-.+|+..++++.. +....+. +.+ --.+.+-.||+|+..++++. .+
T Consensus 29 ~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Af 104 (388)
T COG5238 29 MDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AF 104 (388)
T ss_pred hcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeecccc-cc
Confidence 4567888888865433 222333320 156677777777642 1111111 000 01112446888888888874 33
Q ss_pred c-cccCCCc-ccccCCCccEEEeecCCCceEecccccCC-----cc---ccccCCccEEEEeecCccccccccchhhc--
Q 036801 81 T-SFSTGDV-HMLEFPSLKELWISRCPGFMVKFKRTTND-----LT---KKVFPNLEELIVDAKYITTNKFLFSKDLL-- 148 (388)
Q Consensus 81 ~-~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~---~~~l~~L~~L~i~~~~~~~~~~~lp~~~l-- 148 (388)
. .+++... .+.+-..|+.|.+++| .+-.+....+.. .. ...-|.|+...+..|..-.+........+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 2 2222100 1345678888888877 332111111100 00 13567888888877766222122211111
Q ss_pred -cCccEeecccccccccc---ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC
Q 036801 149 -CKLKCLDVEFVDELTTI---LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM 224 (388)
Q Consensus 149 -~~L~~L~l~~~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l 224 (388)
.+|+.+.+..+...+ . ......+.++++|+.|++..|-+ +-.-+..+ . ..+..+
T Consensus 184 h~~lk~vki~qNgIrp-egv~~L~~~gl~y~~~LevLDlqDNtf---t~~gS~~L-----------------a-~al~~W 241 (388)
T COG5238 184 HENLKEVKIQQNGIRP-EGVTMLAFLGLFYSHSLEVLDLQDNTF---TLEGSRYL-----------------A-DALCEW 241 (388)
T ss_pred hcCceeEEeeecCcCc-chhHHHHHHHHHHhCcceeeeccccch---hhhhHHHH-----------------H-HHhccc
Confidence 267777776654322 1 11122456788899988844443 11000000 0 344566
Q ss_pred CccceEEecCCc
Q 036801 225 DNLVILRVSSCH 236 (388)
Q Consensus 225 ~~L~~L~l~~c~ 236 (388)
+.|++|.+.+|-
T Consensus 242 ~~lrEL~lnDCl 253 (388)
T COG5238 242 NLLRELRLNDCL 253 (388)
T ss_pred chhhhccccchh
Confidence 778999998883
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.00 E-value=0.27 Score=43.40 Aligned_cols=261 Identities=14% Similarity=0.002 Sum_probs=124.3
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEeccccc----------ccccccCCCcccccCCCccEEEe
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLE----------KLTSFSTGDVHMLEFPSLKELWI 101 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~l~~~~~~~~~~~~~~~L~~L~l 101 (388)
-+..+..++|++|.--++- +++.-..+..-.+|+...+++.- ++..+.+. ...||.|++.++
T Consensus 28 ~~d~~~evdLSGNtigtEA-----~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~a---Llkcp~l~~v~L 99 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEA-----MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA---LLKCPRLQKVDL 99 (388)
T ss_pred hhcceeEEeccCCcccHHH-----HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHH---HhcCCcceeeec
Confidence 4667889999997311110 01111113345667777766421 11111112 345899999999
Q ss_pred ecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhh-ccCccEeeccccccccccccchhHhhcCCCccE
Q 036801 102 SRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL-LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKV 180 (388)
Q Consensus 102 ~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 180 (388)
+++.-=...+... +.+...-..|.+|.+.+|.. ..+.-+. -..|++|.... -..+-|.|++
T Consensus 100 SDNAfg~~~~e~L--~d~is~~t~l~HL~l~NnGl----Gp~aG~rigkal~~la~nK------------Kaa~kp~Le~ 161 (388)
T COG5238 100 SDNAFGSEFPEEL--GDLISSSTDLVHLKLNNNGL----GPIAGGRIGKALFHLAYNK------------KAADKPKLEV 161 (388)
T ss_pred cccccCcccchHH--HHHHhcCCCceeEEeecCCC----CccchhHHHHHHHHHHHHh------------hhccCCCceE
Confidence 8874222222222 22335667889999988876 3322221 11222222111 1233466777
Q ss_pred EEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----ccc-CCCCCCCCCcCEEE
Q 036801 181 LQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INL-VPSSTSFQNLTTLE 255 (388)
Q Consensus 181 L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l-~~~~~~~~~L~~L~ 255 (388)
+..+.|.+ ...+... |- ..+..-.+|+.+.+..+..- +.+ .-.+.++++|+.|+
T Consensus 162 vicgrNRl----engs~~~----------------~a-~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLD 220 (388)
T COG5238 162 VICGRNRL----ENGSKEL----------------SA-ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLD 220 (388)
T ss_pred EEeccchh----ccCcHHH----------------HH-HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeee
Confidence 66655555 1111000 00 11222246677777655221 111 12346788899999
Q ss_pred EecCCCceeecc---hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccc----cceec
Q 036801 256 ISHCNGLKNVLT---FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLES----LRSFY 328 (388)
Q Consensus 256 l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~ 328 (388)
+.+. -++.... ..+.+.++.|++|.+.+|-.-.+-..... ..+ .-..+|.|..|...+... +..+.
T Consensus 221 lqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~----~~f--~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 221 LQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL----RRF--NEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred cccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH----HHh--hhhcCCCccccccchhhhcCceeeeec
Confidence 8753 2221111 11245677899999988832221110000 000 012457777776665432 11211
Q ss_pred -cCcccccCCCcceEeccC
Q 036801 329 -SGYCALNFPSLERLLVDD 346 (388)
Q Consensus 329 -~~~~~~~~~~L~~L~l~~ 346 (388)
....-..+|-|..|.+.+
T Consensus 294 l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred hhhhhhcccHHHHHHHHcc
Confidence 111113467777777765
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.54 E-value=0.78 Score=24.66 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=12.0
Q ss_pred CCCccEEEeecCCCce
Q 036801 93 FPSLKELWISRCPGFM 108 (388)
Q Consensus 93 ~~~L~~L~l~~c~~l~ 108 (388)
+++|+.|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888887765
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=69.60 E-value=3.4 Score=21.99 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=6.3
Q ss_pred CCccEEEEeecCc
Q 036801 124 PNLEELIVDAKYI 136 (388)
Q Consensus 124 ~~L~~L~i~~~~~ 136 (388)
++|+.|++.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555555444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=69.60 E-value=3.4 Score=21.99 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=6.3
Q ss_pred CCccEEEEeecCc
Q 036801 124 PNLEELIVDAKYI 136 (388)
Q Consensus 124 ~~L~~L~i~~~~~ 136 (388)
++|+.|++.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555555444
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.61 E-value=2 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=5.5
Q ss_pred CcccEEeEecCC
Q 036801 6 QNLTHLTFYNCM 17 (388)
Q Consensus 6 ~~L~~L~l~~~~ 17 (388)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455666665543
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.25 E-value=27 Score=18.86 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=6.7
Q ss_pred cccceeecccc
Q 036801 34 VRLQYIEIEKC 44 (388)
Q Consensus 34 ~~L~~L~L~~~ 44 (388)
++|++|++.+|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 45666666665
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=34.42 E-value=26 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=12.9
Q ss_pred CCcceEeccCCcccccCCC
Q 036801 337 PSLERLLVDDCTNMEIFSR 355 (388)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~~ 355 (388)
++|+.|.+++ ++++.+|.
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4677888876 56777775
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.10 E-value=21 Score=35.16 Aligned_cols=86 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccc--cceEecccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPR--LQYLKMYDLEKLT 81 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~l~ 81 (388)
+.+.+..+.++++....--.-.++.+ ..|+|+.|+|++|.....-..+ +.++.. |++|.+.+.|--+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq--~apklk~L~LS~N~~~~~~~~e---------l~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ--IAPKLKTLDLSHNHSKISSESE---------LDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH--hcchhheeecccchhhhcchhh---------hhhhcCCCHHHeeecCCcccc
Q ss_pred cccCCCcccc----cCCCccEEE
Q 036801 82 SFSTGDVHML----EFPSLKELW 100 (388)
Q Consensus 82 ~~~~~~~~~~----~~~~L~~L~ 100 (388)
.+....-.+. .||.|..|+
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred chhhhHHHHHHHHHhcchheeec
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.73 E-value=48 Score=17.95 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.3
Q ss_pred cccceeecccc
Q 036801 34 VRLQYIEIEKC 44 (388)
Q Consensus 34 ~~L~~L~L~~~ 44 (388)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 35677777766
Done!