Query 036801
Match_columns 388
No_of_seqs 141 out of 1929
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 1.8E-22 6.1E-27 196.2 26.4 304 6-380 32-336 (477)
2 3t6q_A CD180 antigen; protein- 99.9 4.2E-21 1.4E-25 192.0 23.9 328 6-369 33-433 (606)
3 3o6n_A APL1; leucine-rich repe 99.9 2.1E-21 7E-26 183.8 20.4 307 4-378 43-353 (390)
4 3rgz_A Protein brassinosteroid 99.9 7.3E-22 2.5E-26 202.7 18.5 318 3-370 197-547 (768)
5 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-21 1.2E-25 192.7 22.3 139 221-380 420-561 (606)
6 4fmz_A Internalin; leucine ric 99.9 3.9E-21 1.3E-25 178.9 19.2 297 4-369 42-341 (347)
7 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-20 3.5E-25 187.6 22.6 149 222-379 350-512 (562)
8 3t6q_A CD180 antigen; protein- 99.9 2.8E-21 9.5E-26 193.3 18.5 305 7-380 255-563 (606)
9 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.6E-25 185.7 22.2 150 222-380 321-484 (520)
10 3oja_B Anopheles plasmodium-re 99.9 6.6E-21 2.3E-25 190.2 20.4 307 4-378 49-359 (597)
11 3v47_A TOLL-like receptor 5B a 99.9 5.6E-21 1.9E-25 184.4 19.1 321 6-378 30-409 (455)
12 3rgz_A Protein brassinosteroid 99.9 4.2E-21 1.5E-25 197.0 18.9 328 2-370 174-523 (768)
13 4eco_A Uncharacterized protein 99.9 2.6E-21 8.9E-26 194.4 16.8 310 4-369 247-595 (636)
14 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-20 4.7E-25 186.0 19.9 145 221-378 357-511 (549)
15 4eco_A Uncharacterized protein 99.9 2.9E-21 9.8E-26 194.1 15.0 319 2-370 202-575 (636)
16 3o6n_A APL1; leucine-rich repe 99.9 1.1E-20 3.9E-25 178.7 18.1 281 32-370 43-327 (390)
17 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-20 1.5E-24 187.0 21.8 216 150-381 382-626 (680)
18 4ecn_A Leucine-rich repeat pro 99.8 1.3E-20 4.4E-25 193.6 17.7 317 4-369 489-835 (876)
19 3vq2_A TLR4, TOLL-like recepto 99.8 8.9E-20 3E-24 182.4 23.1 111 3-136 53-165 (606)
20 2id5_A Lingo-1, leucine rich r 99.8 7.3E-20 2.5E-24 177.8 20.5 271 2-321 52-330 (477)
21 2z63_A TOLL-like receptor 4, v 99.8 8.4E-20 2.9E-24 181.1 20.7 63 309-378 468-532 (570)
22 3v47_A TOLL-like receptor 5B a 99.8 1.2E-19 4.2E-24 175.0 21.1 306 2-349 50-407 (455)
23 2z81_A CD282 antigen, TOLL-lik 99.8 9.4E-20 3.2E-24 180.0 20.4 131 223-370 332-482 (549)
24 2z63_A TOLL-like receptor 4, v 99.8 2.2E-19 7.5E-24 178.1 22.9 132 222-369 370-502 (570)
25 1ziw_A TOLL-like receptor 3; i 99.8 2.7E-19 9.3E-24 181.3 23.9 64 64-136 94-157 (680)
26 1o6v_A Internalin A; bacterial 99.8 3.9E-19 1.3E-23 172.1 23.5 124 221-370 261-384 (466)
27 4ecn_A Leucine-rich repeat pro 99.8 5.3E-20 1.8E-24 189.0 17.4 57 310-369 752-814 (876)
28 4fmz_A Internalin; leucine ric 99.8 1.5E-19 5.1E-24 168.2 18.6 275 32-370 42-320 (347)
29 3oja_B Anopheles plasmodium-re 99.8 1E-19 3.5E-24 181.6 18.6 281 32-370 49-333 (597)
30 3bz5_A Internalin-J, INLJ; leu 99.8 1.9E-19 6.6E-24 173.5 19.2 303 3-370 39-348 (457)
31 3j0a_A TOLL-like receptor 5; m 99.8 2E-18 6.8E-23 179.0 28.0 114 3-136 45-160 (844)
32 4fcg_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 164.7 18.4 225 5-283 80-309 (328)
33 1xku_A Decorin; proteoglycan, 99.8 7E-18 2.4E-22 155.8 22.4 247 35-354 32-279 (330)
34 3j0a_A TOLL-like receptor 5; m 99.8 7E-18 2.4E-22 174.9 24.4 317 5-370 23-390 (844)
35 4g8a_A TOLL-like receptor 4; l 99.8 7.4E-18 2.5E-22 169.0 23.6 144 220-382 440-585 (635)
36 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-18 9.1E-23 158.8 18.6 283 35-369 34-328 (332)
37 4fcg_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 157.0 19.3 227 93-369 80-309 (328)
38 1xku_A Decorin; proteoglycan, 99.8 1.2E-17 4.3E-22 154.1 21.7 285 7-369 32-327 (330)
39 1o6v_A Internalin A; bacterial 99.8 1E-17 3.6E-22 162.1 21.8 196 121-355 196-392 (466)
40 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-18 1.6E-22 157.2 17.9 292 7-348 34-331 (332)
41 2z7x_B TOLL-like receptor 1, v 99.8 5.7E-17 1.9E-21 159.0 23.9 126 6-161 21-150 (520)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.7E-17 3.3E-21 158.9 24.9 127 6-161 52-181 (562)
43 2z80_A TOLL-like receptor 2, v 99.8 1.1E-17 3.8E-22 155.9 16.6 277 32-378 29-315 (353)
44 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-17 4.1E-22 153.1 15.9 252 34-355 50-309 (313)
45 3zyi_A Leucine-rich repeat-con 99.8 2.2E-17 7.4E-22 159.2 17.7 225 7-285 76-300 (452)
46 3zyj_A Leucine-rich repeat-con 99.7 3.5E-17 1.2E-21 157.2 18.4 225 6-284 64-288 (440)
47 3bz5_A Internalin-J, INLJ; leu 99.7 2.8E-17 9.5E-22 158.4 17.2 284 2-353 60-354 (457)
48 3o53_A Protein LRIM1, AGAP0063 99.7 8.7E-18 3E-22 154.3 12.2 245 32-353 32-278 (317)
49 1ozn_A Reticulon 4 receptor; N 99.7 3.3E-17 1.1E-21 148.1 15.1 220 9-286 14-236 (285)
50 1ogq_A PGIP-2, polygalacturona 99.7 1.8E-17 6.3E-22 151.9 13.5 250 67-378 50-305 (313)
51 3zyj_A Leucine-rich repeat-con 99.7 2E-16 6.9E-21 151.9 20.9 239 79-382 54-297 (440)
52 1jl5_A Outer protein YOPM; leu 99.7 3.6E-16 1.2E-20 150.5 20.2 240 63-369 149-404 (454)
53 3o53_A Protein LRIM1, AGAP0063 99.7 9.9E-18 3.4E-22 154.0 8.4 269 3-350 31-299 (317)
54 4g8a_A TOLL-like receptor 4; l 99.7 5.7E-16 2E-20 155.2 21.8 129 7-159 53-183 (635)
55 3zyi_A Leucine-rich repeat-con 99.7 2.6E-16 8.8E-21 151.7 16.7 205 2-260 95-301 (452)
56 2z80_A TOLL-like receptor 2, v 99.7 1.9E-16 6.6E-21 147.5 14.9 253 6-322 52-312 (353)
57 2z66_A Variable lymphocyte rec 99.7 1.9E-16 6.5E-21 144.5 13.2 242 9-322 10-259 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.6E-20 151.4 19.6 252 7-369 41-292 (622)
59 1jl5_A Outer protein YOPM; leu 99.7 3.8E-16 1.3E-20 150.4 14.8 224 5-285 10-247 (454)
60 3oja_A Leucine-rich immune mol 99.7 9.5E-16 3.2E-20 148.9 16.9 215 5-285 33-247 (487)
61 2z66_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 139.6 14.2 229 6-286 28-259 (306)
62 2p1m_B Transport inhibitor res 99.6 1.2E-17 4E-22 166.5 0.2 163 3-183 63-242 (594)
63 3ogk_B Coronatine-insensitive 99.6 7.5E-17 2.6E-21 160.6 6.0 133 224-369 402-546 (592)
64 3oja_A Leucine-rich immune mol 99.6 8.6E-16 2.9E-20 149.3 12.0 239 32-347 32-272 (487)
65 3g06_A SSPH2 (leucine-rich rep 99.6 8.5E-15 2.9E-19 145.6 19.2 235 6-348 61-295 (622)
66 2xwt_C Thyrotropin receptor; s 99.6 3.2E-15 1.1E-19 131.4 14.3 212 16-287 20-238 (239)
67 2xwt_C Thyrotropin receptor; s 99.6 6.2E-15 2.1E-19 129.5 15.1 198 67-323 31-238 (239)
68 3ogk_B Coronatine-insensitive 99.6 8.4E-17 2.9E-21 160.3 2.7 314 3-370 161-522 (592)
69 2p1m_B Transport inhibitor res 99.6 5.4E-17 1.8E-21 161.7 -0.3 316 3-349 153-518 (594)
70 4ay9_X Follicle-stimulating ho 99.6 4.1E-14 1.4E-18 131.6 18.7 224 9-292 12-240 (350)
71 1p9a_G Platelet glycoprotein I 99.6 2E-14 7E-19 130.0 15.8 204 122-380 8-211 (290)
72 1ozn_A Reticulon 4 receptor; N 99.6 2.8E-14 9.5E-19 128.7 16.5 205 93-348 31-236 (285)
73 2z62_A TOLL-like receptor 4, v 99.6 2.5E-14 8.6E-19 128.4 15.5 202 35-285 29-234 (276)
74 1p9a_G Platelet glycoprotein I 99.6 3.5E-14 1.2E-18 128.5 15.2 196 3-259 7-205 (290)
75 1wwl_A Monocyte differentiatio 99.6 6.3E-15 2.2E-19 134.9 10.1 201 123-377 94-309 (312)
76 4ay9_X Follicle-stimulating ho 99.6 1.3E-13 4.5E-18 128.2 19.1 221 66-346 29-255 (350)
77 2o6q_A Variable lymphocyte rec 99.6 5.6E-14 1.9E-18 125.8 15.6 62 221-285 153-215 (270)
78 2ast_B S-phase kinase-associat 99.6 1.5E-15 5E-20 140.4 5.4 225 7-285 48-282 (336)
79 2z62_A TOLL-like receptor 4, v 99.6 3.3E-14 1.1E-18 127.7 14.0 199 7-259 29-234 (276)
80 2o6q_A Variable lymphocyte rec 99.6 3.8E-14 1.3E-18 126.9 13.5 149 8-188 18-169 (270)
81 1z7x_W Ribonuclease inhibitor; 99.6 5.6E-17 1.9E-21 156.5 -5.5 142 3-160 25-181 (461)
82 3rfs_A Internalin B, repeat mo 99.5 1.2E-14 4.2E-19 130.2 9.6 173 32-259 39-215 (272)
83 1wwl_A Monocyte differentiatio 99.5 5.6E-15 1.9E-19 135.2 7.5 257 3-322 40-307 (312)
84 2ast_B S-phase kinase-associat 99.5 2.3E-15 8E-20 139.0 4.1 250 35-353 48-308 (336)
85 1h6u_A Internalin H; cell adhe 99.5 8E-14 2.7E-18 127.2 13.6 188 32-285 39-227 (308)
86 1z7x_W Ribonuclease inhibitor; 99.5 5.5E-16 1.9E-20 149.6 -3.8 329 5-370 2-379 (461)
87 3rfs_A Internalin B, repeat mo 99.5 9.1E-14 3.1E-18 124.5 10.2 227 32-338 17-247 (272)
88 1h6u_A Internalin H; cell adhe 99.5 3.4E-13 1.2E-17 123.0 13.4 57 223-285 149-205 (308)
89 4glp_A Monocyte differentiatio 99.4 3.9E-13 1.3E-17 122.8 9.5 206 66-321 90-304 (310)
90 3m19_A Variable lymphocyte rec 99.4 2.6E-12 8.9E-17 113.5 12.8 174 6-236 14-190 (251)
91 2ca6_A RAN GTPase-activating p 99.4 2.8E-14 9.6E-19 134.5 -0.2 245 32-322 30-314 (386)
92 4glp_A Monocyte differentiatio 99.4 7.1E-13 2.4E-17 121.0 8.6 231 7-285 65-304 (310)
93 2ca6_A RAN GTPase-activating p 99.4 1.4E-13 4.9E-18 129.7 3.9 248 63-348 28-314 (386)
94 3m19_A Variable lymphocyte rec 99.4 5.1E-12 1.8E-16 111.6 13.1 127 34-188 14-143 (251)
95 3goz_A Leucine-rich repeat-con 99.3 5.3E-13 1.8E-17 124.7 2.4 234 11-286 3-264 (362)
96 4ezg_A Putative uncharacterize 99.3 1.2E-11 4.2E-16 105.0 9.5 151 4-188 42-193 (197)
97 1h6t_A Internalin B; cell adhe 99.3 1.6E-11 5.4E-16 111.0 10.6 146 4-188 44-190 (291)
98 1h6t_A Internalin B; cell adhe 99.3 3.4E-11 1.2E-15 108.8 12.0 167 64-285 43-210 (291)
99 1m9s_A Internalin B; cell inva 99.3 1.5E-11 5E-16 122.1 10.4 57 223-285 151-207 (605)
100 2o6s_A Variable lymphocyte rec 99.2 1.4E-11 4.7E-16 105.6 8.5 143 9-183 10-155 (208)
101 1xeu_A Internalin C; cellular 99.2 1.7E-11 5.9E-16 109.1 8.2 166 32-259 17-182 (263)
102 1m9s_A Internalin B; cell inva 99.2 3.6E-11 1.2E-15 119.3 10.6 166 32-259 41-207 (605)
103 3goz_A Leucine-rich repeat-con 99.2 1.2E-12 4.2E-17 122.1 -0.7 245 4-285 20-294 (362)
104 4ezg_A Putative uncharacterize 99.2 2.3E-10 7.9E-15 97.0 13.1 36 223-258 86-121 (197)
105 3cvr_A Invasion plasmid antige 99.2 1.8E-10 6.3E-15 113.2 13.0 113 35-188 60-172 (571)
106 3cvr_A Invasion plasmid antige 99.1 2.1E-10 7.2E-15 112.8 12.3 183 6-260 59-241 (571)
107 2xot_A Amphoterin-induced prot 99.1 1.7E-10 5.9E-15 107.5 10.8 63 65-136 62-124 (361)
108 2o6s_A Variable lymphocyte rec 99.1 2.4E-10 8.3E-15 97.7 10.5 13 124-136 28-40 (208)
109 2v9t_B SLIT homolog 2 protein 99.1 2.9E-10 1E-14 98.2 10.7 148 9-188 14-164 (220)
110 2v9t_B SLIT homolog 2 protein 99.1 6.4E-10 2.2E-14 96.1 12.4 61 67-136 32-92 (220)
111 2xot_A Amphoterin-induced prot 99.1 4.7E-10 1.6E-14 104.5 12.2 61 67-136 39-100 (361)
112 3e6j_A Variable lymphocyte rec 99.1 2.8E-10 9.5E-15 99.0 9.9 149 8-188 21-171 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.1 4.9E-10 1.7E-14 96.8 11.4 107 92-236 55-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.1 7.7E-10 2.6E-14 95.6 12.5 145 70-259 14-163 (220)
115 1dce_A Protein (RAB geranylger 99.0 8.9E-12 3.1E-16 122.9 -3.4 121 125-282 442-567 (567)
116 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.5E-14 100.8 10.4 67 219-291 244-312 (329)
117 2ell_A Acidic leucine-rich nuc 99.0 5.9E-10 2E-14 91.9 7.6 107 64-188 46-159 (168)
118 3e6j_A Variable lymphocyte rec 99.0 2E-09 7E-14 93.5 11.4 143 70-258 22-168 (229)
119 1xeu_A Internalin C; cellular 99.0 1.1E-09 3.6E-14 97.4 9.7 146 3-188 38-184 (263)
120 2je0_A Acidic leucine-rich nuc 99.0 6.4E-10 2.2E-14 89.7 5.8 33 148-183 112-147 (149)
121 2ell_A Acidic leucine-rich nuc 98.9 3.6E-09 1.2E-13 87.1 8.9 132 4-163 22-161 (168)
122 1a9n_A U2A', U2A'; complex (nu 98.9 3.9E-09 1.3E-13 87.6 8.7 39 63-104 60-98 (176)
123 3sb4_A Hypothetical leucine ri 98.9 1.4E-08 4.6E-13 93.3 12.1 99 175-282 225-328 (329)
124 2je0_A Acidic leucine-rich nuc 98.8 4.5E-09 1.5E-13 84.6 6.6 126 4-157 15-148 (149)
125 4fdw_A Leucine rich hypothetic 98.8 1.6E-07 5.4E-12 88.5 17.7 236 7-284 136-379 (401)
126 1a9n_A U2A', U2A'; complex (nu 98.8 1.1E-08 3.7E-13 85.0 8.6 128 32-188 17-152 (176)
127 1w8a_A SLIT protein; signaling 98.8 2.5E-08 8.7E-13 84.0 10.3 104 9-136 11-114 (192)
128 4fdw_A Leucine rich hypothetic 98.8 9.6E-07 3.3E-11 83.1 21.5 259 33-370 112-379 (401)
129 2o6r_A Variable lymphocyte rec 98.8 2.1E-08 7.2E-13 83.2 8.7 125 8-161 9-136 (177)
130 2wfh_A SLIT homolog 2 protein 98.8 3.2E-08 1.1E-12 83.4 9.6 102 9-136 13-114 (193)
131 2wfh_A SLIT homolog 2 protein 98.7 3.1E-08 1.1E-12 83.5 8.6 108 6-136 31-138 (193)
132 4fs7_A Uncharacterized protein 98.7 1E-06 3.6E-11 82.8 19.2 126 219-369 247-374 (394)
133 1w8a_A SLIT protein; signaling 98.7 5.4E-08 1.8E-12 82.0 8.9 109 6-136 29-138 (192)
134 1dce_A Protein (RAB geranylger 98.6 6.2E-08 2.1E-12 95.5 8.6 121 35-182 442-566 (567)
135 1ds9_A Outer arm dynein; leuci 98.6 3.2E-09 1.1E-13 90.0 -0.8 126 26-182 43-180 (198)
136 2o6r_A Variable lymphocyte rec 98.6 1.8E-07 6.3E-12 77.4 9.7 62 221-285 72-134 (177)
137 4b8c_D Glucose-repressible alc 98.5 1.1E-07 3.8E-12 96.5 7.2 109 3-137 221-329 (727)
138 3e4g_A ATP synthase subunit S, 98.5 3.3E-08 1.1E-12 81.2 2.3 87 35-137 62-152 (176)
139 1ds9_A Outer arm dynein; leuci 98.4 1.5E-08 5E-13 85.9 -1.1 107 63-188 44-152 (198)
140 4b8c_D Glucose-repressible alc 98.4 1.5E-07 5.2E-12 95.5 5.8 105 65-188 222-328 (727)
141 3g39_A Variable lymphocyte rec 98.4 6.8E-07 2.3E-11 73.6 8.0 104 8-136 11-114 (170)
142 2r9u_A Variable lymphocyte rec 98.4 8.4E-07 2.9E-11 73.3 8.1 103 9-136 15-117 (174)
143 4fs7_A Uncharacterized protein 98.4 2E-05 7E-10 73.9 18.0 302 3-366 68-393 (394)
144 4gt6_A Cell surface protein; l 98.3 0.00013 4.3E-09 68.4 23.0 303 7-369 65-386 (394)
145 3e4g_A ATP synthase subunit S, 98.3 3.6E-07 1.2E-11 74.9 4.0 90 225-326 61-154 (176)
146 2r9u_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 72.4 7.0 84 6-105 33-116 (174)
147 3g39_A Variable lymphocyte rec 98.3 1.3E-06 4.4E-11 71.8 7.0 85 5-105 29-113 (170)
148 2ifg_A High affinity nerve gro 98.2 2.6E-06 8.9E-11 78.5 8.1 105 9-136 11-115 (347)
149 3un9_A NLR family member X1; l 98.1 2.6E-07 8.8E-12 86.1 -0.7 11 94-104 101-111 (372)
150 2ifg_A High affinity nerve gro 98.1 6.1E-06 2.1E-10 76.0 8.3 88 2-105 27-114 (347)
151 4gt6_A Cell surface protein; l 98.0 0.00056 1.9E-08 63.9 19.6 107 2-133 83-191 (394)
152 2ra8_A Uncharacterized protein 97.9 1.9E-05 6.5E-10 73.1 7.7 57 122-183 170-226 (362)
153 2ra8_A Uncharacterized protein 97.9 1.3E-05 4.6E-10 74.1 5.7 36 310-348 278-318 (362)
154 3un9_A NLR family member X1; l 97.8 1.3E-06 4.6E-11 81.3 -2.9 170 92-286 70-250 (372)
155 4h09_A Hypothetical leucine ri 97.4 0.036 1.2E-06 51.1 21.5 79 32-133 44-122 (379)
156 4h09_A Hypothetical leucine ri 97.4 0.019 6.4E-07 53.0 19.5 100 211-330 250-350 (379)
157 1io0_A Tropomodulin; LRR prote 96.1 0.00067 2.3E-08 56.2 -1.0 122 32-160 34-162 (185)
158 3rw6_A Nuclear RNA export fact 95.9 0.0026 8.9E-08 55.8 2.0 89 32-130 168-257 (267)
159 1io0_A Tropomodulin; LRR prote 95.6 0.0035 1.2E-07 51.8 1.3 62 224-285 92-161 (185)
160 3rw6_A Nuclear RNA export fact 95.3 0.013 4.3E-07 51.4 4.1 81 92-182 168-257 (267)
161 3rfe_A Platelet glycoprotein I 88.7 0.44 1.5E-05 36.5 4.2 41 337-381 31-72 (130)
162 3rfe_A Platelet glycoprotein I 86.5 0.75 2.6E-05 35.1 4.4 36 93-134 30-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 78.3 0.78 2.7E-05 37.9 1.6 11 225-235 98-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 57.0 2.8 9.5E-05 34.5 0.6 66 219-285 64-136 (197)
165 2lz0_A Uncharacterized protein 21.1 69 0.0024 22.7 2.9 46 18-76 7-52 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.8e-22 Score=196.21 Aligned_cols=304 Identities=20% Similarity=0.169 Sum_probs=223.6
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
+++++|+++++ .++.+.|..|. ++++|++|+|++| .+..+.... +..+++|++|++.++ .+..++.
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFA---SFPHLEELELNEN-IVSAVEPGA--------FNNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCSCCT
T ss_pred CCCcEEECCCC-ccceECHhHcc---CCCCCCEEECCCC-ccCEeChhh--------hhCCccCCEEECCCC-cCCccCc
Confidence 47889999885 56777677777 7999999999988 566654321 567889999999874 6777776
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
.. +..+++|++|++++| .+..+....+ ..+++|++|++++|.+. .+..-....+++|+.|+++++....
T Consensus 98 ~~--~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-- 166 (477)
T 2id5_A 98 GV--FTGLSNLTKLDISEN-KIVILLDYMF-----QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS-- 166 (477)
T ss_dssp TS--STTCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSS--
T ss_pred cc--ccCCCCCCEEECCCC-ccccCChhHc-----cccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcc--
Confidence 64 567899999999888 5555555444 57889999999888762 1111123457889999998875433
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
++...+..+++|+.|++..+.+ .... + ..+..+++|+.|++++|..+..++...
T Consensus 167 -~~~~~l~~l~~L~~L~l~~n~i---~~~~---------------------~-~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 167 -IPTEALSHLHGLIVLRLRHLNI---NAIR---------------------D-YSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp -CCHHHHTTCTTCCEEEEESCCC---CEEC---------------------T-TCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred -cChhHhcccCCCcEEeCCCCcC---cEeC---------------------h-hhcccCcccceeeCCCCccccccCccc
Confidence 5555788889999999966666 3321 2 566788999999999998888888877
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR 325 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 325 (388)
....+|+.|+++++ .+..++.. ....+++|++|+++++. ++.+.... +..+++|+.|++.++ .+.
T Consensus 221 ~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~ 285 (477)
T 2id5_A 221 LYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHELLRLQEIQLVGG-QLA 285 (477)
T ss_dssp TTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECTTS-----------CTTCTTCCEEECCSS-CCS
T ss_pred ccCccccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccChhh-----------ccccccCCEEECCCC-ccc
Confidence 77779999999976 67767654 34678999999997764 55443211 224689999999987 566
Q ss_pred eeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEeccCCccccccc
Q 036801 326 SFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLNMWDEACWAWKE 380 (388)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~~~~~~~~~~ 380 (388)
.+.... +..+++|+.|+++++ .++.++.. +..+++|+.+++. ++.|.++.
T Consensus 286 ~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~---~N~l~c~c 336 (477)
T 2id5_A 286 VVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD---SNPLACDC 336 (477)
T ss_dssp EECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC---SSCEECSG
T ss_pred eECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc---CCCccCcc
Confidence 664433 367899999999986 77777765 3567999999998 66666543
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.2e-21 Score=192.02 Aligned_cols=328 Identities=16% Similarity=0.110 Sum_probs=195.1
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
+++++|+++++ .++.+.|..|+ ++++|++|++++| .+..+.... +..+++|++|+++++ .+....+
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTFS---RLINLTFLDLTRC-QIYWIHEDT--------FQSQHRLDTLVLTAN-PLIFMAE 98 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTST---TCTTCSEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCSEECT
T ss_pred CcCcEEEccCC-ccCcCChhHhc---cCccceEEECCCC-ccceeChhh--------ccCccccCeeeCCCC-cccccCh
Confidence 36888998875 56777777787 7889999999888 455543321 567888888888874 5666655
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCccEeeccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~~L~l~~~~~~~~ 164 (388)
.. +..+++|++|++++| .+..++...+ ..+++|++|++++|.+.. ...|. ..+++|++|+++++....
T Consensus 99 ~~--~~~l~~L~~L~L~~n-~i~~l~~~~~-----~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~- 167 (606)
T 3t6q_A 99 TA--LSGPKALKHLFFIQT-GISSIDFIPL-----HNQKTLESLYLGSNHISS--IKLPKGFPTEKLKVLDFQNNAIHY- 167 (606)
T ss_dssp TT--TSSCTTCCEEECTTS-CCSCGGGSCC-----TTCTTCCEEECCSSCCCC--CCCCTTCCCTTCCEEECCSSCCCE-
T ss_pred hh--hcccccccEeecccc-CcccCCcchh-----ccCCcccEEECCCCcccc--cCcccccCCcccCEEEcccCcccc-
Confidence 54 667888888888887 5555543333 578888888888877621 11122 227788888888765432
Q ss_pred cccchhHhhcCCCcc--EEEEEeccCCCCceeecCcc-------------------------------------------
Q 036801 165 ILSLDDFLQRFHTLK--VLQIEGYNYWLPKEKVENGV------------------------------------------- 199 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~--~L~l~~~~l~~~~~~~~~~~------------------------------------------- 199 (388)
.+...+..+++|+ .|++..+.+ ....+..+
T Consensus 168 --~~~~~~~~l~~L~~l~L~l~~n~l---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 168 --LSKEDMSSLQQATNLSLNLNGNDI---AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp --ECHHHHHTTTTCCSEEEECTTCCC---CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred --cChhhhhhhcccceeEEecCCCcc---CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 3334677788887 566644454 23222111
Q ss_pred -----ccccc--e-eeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecch
Q 036801 200 -----EVIIR--E-AYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTF 268 (388)
Q Consensus 200 -----~~~L~--~-~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 268 (388)
+..+. . ..+.+ .+..+++ ..+..+++|+.|++++| .++.+|..+..+++|++|+++++ .+..++..
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~ 319 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQI 319 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCH-HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccC-CcCcCchh
Confidence 11111 1 22333 4455555 56778899999999888 56678888888899999999875 45554333
Q ss_pred hhhhccCccCEEeeccccccccccccCCCC------------Ccccc---ccceecccccceeecccccccceeccCccc
Q 036801 269 LIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAA---KDEVIAFSKLNELRLLNLESLRSFYSGYCA 333 (388)
Q Consensus 269 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~------------~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 333 (388)
.+..+++|++|++.++.....+....-.. ..... ......+++|+.|++.++. +..+.... +
T Consensus 320 -~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~ 396 (606)
T 3t6q_A 320 -SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEA-F 396 (606)
T ss_dssp -CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTT-T
T ss_pred -hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHH-h
Confidence 23567888888887664322221110000 00000 0112234556666665542 33332221 2
Q ss_pred ccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEe
Q 036801 334 LNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLN 369 (388)
Q Consensus 334 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~ 369 (388)
..+++|++|++++|..-...+.. +..+++|+.++++
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 45666666666665322222222 4456677777766
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-21 Score=183.80 Aligned_cols=307 Identities=16% Similarity=0.160 Sum_probs=220.3
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.++++++|+++++ .++.+++..+. .+++|++|++++| .+..++... +..+++|++|++.++ .+..+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLD---SFRQVELLNLNDL-QIEEIDTYA--------FAYAHTIQKLYMGFN-AIRYL 108 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHH---HCCCCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCCC
T ss_pred ccCCceEEEecCC-chhhCChhHhc---ccccCcEEECCCC-cccccChhh--------ccCCCCcCEEECCCC-CCCcC
Confidence 4688999999985 46777555466 7999999999998 566665432 667899999999875 68877
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeeccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVD 160 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~ 160 (388)
++.. +..+++|++|++++| .++.++...+ ..+++|++|++++|.+ ..++ ...+++|++|+++++.
T Consensus 109 ~~~~--~~~l~~L~~L~L~~n-~l~~l~~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 109 PPHV--FQNVPLLTVLVLERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CBCCTTTTSSCTTCCEEECCSSC
T ss_pred CHHH--hcCCCCCCEEECCCC-ccCcCCHHHh-----cCCCCCcEEECCCCcc----CccChhhccCCCCCCEEECCCCc
Confidence 7664 678999999999988 6777776655 5789999999999877 3333 3457899999999875
Q ss_pred cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccc
Q 036801 161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLI 239 (388)
Q Consensus 161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~ 239 (388)
... . .+..+++|+.|++..+.+ +. ++ ...+++..++.- .+..++. ...++|+.|++.+|. ++
T Consensus 177 l~~---~---~~~~l~~L~~L~l~~n~l---~~-~~--~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~-l~ 239 (390)
T 3o6n_A 177 LTH---V---DLSLIPSLFHANVSYNLL---ST-LA--IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LT 239 (390)
T ss_dssp CSB---C---CGGGCTTCSEEECCSSCC---SE-EE--CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSC-CC
T ss_pred CCc---c---ccccccccceeecccccc---cc-cC--CCCcceEEECCCCeeeeccc----cccccccEEECCCCC-Cc
Confidence 433 2 345688999999865666 32 21 112233222222 4444432 234789999999884 44
Q ss_pred ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecc
Q 036801 240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLL 319 (388)
Q Consensus 240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (388)
.. +.+..+++|+.|+++++ .+...... ....+++|++|+++++ .++.+.... ..+++|+.|+++
T Consensus 240 ~~-~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~------------~~l~~L~~L~L~ 303 (390)
T 3o6n_A 240 DT-AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG------------QPIPTLKVLDLS 303 (390)
T ss_dssp CC-GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEECSS------------SCCTTCCEEECC
T ss_pred cc-HHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCccc------------CCCCCCCEEECC
Confidence 44 46778899999999976 56665443 3457899999999775 455553221 246899999999
Q ss_pred cccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801 320 NLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 320 ~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 378 (388)
++ .+..++... ..+++|++|++++| .++.++ ...+++|+.++++ ++.|.+
T Consensus 304 ~n-~l~~~~~~~--~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~---~N~~~~ 353 (390)
T 3o6n_A 304 HN-HLLHVERNQ--PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLS---HNDWDC 353 (390)
T ss_dssp SS-CCCCCGGGH--HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECC---SSCEEH
T ss_pred CC-cceecCccc--cccCcCCEEECCCC-ccceeC--chhhccCCEEEcC---CCCccc
Confidence 97 577777654 67899999999986 567776 4467999999999 665554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=7.3e-22 Score=202.70 Aligned_cols=318 Identities=14% Similarity=0.012 Sum_probs=173.2
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..+++|++|++++|.. +...|. ++ .+++|++|++++|.-...++.. +..+++|++|++.++ .+..
T Consensus 197 ~~l~~L~~L~Ls~n~l-~~~~~~-l~---~l~~L~~L~Ls~n~l~~~~~~~---------l~~l~~L~~L~Ls~n-~l~~ 261 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNF-STGIPF-LG---DCSALQHLDISGNKLSGDFSRA---------ISTCTELKLLNISSN-QFVG 261 (768)
T ss_dssp TTCTTCCEEECCSSCC-CSCCCB-CT---TCCSCCEEECCSSCCCSCHHHH---------TTTCSSCCEEECCSS-CCEE
T ss_pred ccCCcCCEEECcCCcC-CCCCcc-cc---cCCCCCEEECcCCcCCCcccHH---------HhcCCCCCEEECCCC-cccC
Confidence 4678888888888654 333344 66 7888888888887422233332 455667777777654 3332
Q ss_pred ccCCCcccccCCCccEEEeecCCCce-EecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeecccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFM-VKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFV 159 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~ 159 (388)
..+. ..+++|++|++++| .+. .+|.... ..+++|++|++++|.+. ...| .+.+++|++|+++++
T Consensus 262 ~~~~----~~l~~L~~L~L~~n-~l~~~ip~~~~-----~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 262 PIPP----LPLKSLQYLSLAEN-KFTGEIPDFLS-----GACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp SCCC----CCCTTCCEEECCSS-EEEESCCCCSC-----TTCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCSS
T ss_pred ccCc----cccCCCCEEECcCC-ccCCccCHHHH-----hhcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCCC
Confidence 2222 13566666666655 222 2222221 22355555555555432 1112 123445555555554
Q ss_pred ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccc---ccc-----------------------e-eeeee--
Q 036801 160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV---IIR-----------------------E-AYNCY-- 210 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~L~-----------------------~-~~l~l-- 210 (388)
.... .+|...+..+++|+.|++..+.+ .+.+|..+.. +|+ . +.+++
T Consensus 329 ~l~~--~ip~~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 329 NFSG--ELPMDTLLKMRGLKVLDLSFNEF---SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EEEE--ECCHHHHTTCTTCCEEECCSSEE---EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred cccC--cCCHHHHhcCCCCCEEeCcCCcc---CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 3221 23333344455555555533333 2222222110 111 1 12222
Q ss_pred -ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801 211 -DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT 289 (388)
Q Consensus 211 -~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 289 (388)
.+.+..+ ..+..+++|+.|++++|......|..+..+++|+.|++++|.....++. ....+++|++|+++++.-..
T Consensus 404 n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 404 NGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp SEEEEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCS
T ss_pred CccccccC-HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccC
Confidence 3333333 4555666677777766644445555566666777777766533223333 23456677777776553221
Q ss_pred cccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 290 EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
.+.. ....+++|+.|++.++.-...++... ..+++|++|++++|.-...+|..+..+++|+.++++
T Consensus 481 ~~p~------------~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 481 EIPS------------GLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCCG------------GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred cCCH------------HHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 1111 12346888999998886444666644 678999999999886666788888888999999888
Q ss_pred c
Q 036801 370 M 370 (388)
Q Consensus 370 ~ 370 (388)
.
T Consensus 547 ~ 547 (768)
T 3rgz_A 547 T 547 (768)
T ss_dssp S
T ss_pred C
Confidence 4
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3.4e-21 Score=192.69 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=78.4
Q ss_pred CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCcee-ecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKN-VLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD 299 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 299 (388)
+..+++|+.|++++|......+..+..+++|++|+++++. +.. .... .+..+++|++|++++|. ++.+...
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~----- 491 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSN-VFANTTNLTFLDLSKCQ-LEQISWG----- 491 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-----
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHH-hhccCCCCCEEECCCCc-CCccChh-----
Confidence 3344455555555443333333344455555555555432 221 1111 12345555555554442 2222111
Q ss_pred ccccccceecccccceeeccccccccee-ccCcccccCCCcceEeccCCcccccCCCCCcCCC-CcceEEEeccCCcccc
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLESLRSF-YSGYCALNFPSLERLLVDDCTNMEIFSRGELSTP-MLHKVQLNMWDEACWA 377 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~l~l~~~~~~~~~ 377 (388)
....+++|+.|+++++. +..+ +... ..+++|++|++++| .++.+|..+..++ +|+.+++. ++.|.
T Consensus 492 ------~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~---~N~~~ 558 (606)
T 3vq2_A 492 ------VFDTLHRLQLLNMSHNN-LLFLDSSHY--NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLT---NNSVA 558 (606)
T ss_dssp ------TTTTCTTCCEEECCSSC-CSCEEGGGT--TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECC---SCCCC
T ss_pred ------hhcccccCCEEECCCCc-CCCcCHHHc--cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEcc---CCCcc
Confidence 12346888899998874 5544 4433 67899999999986 5788888877776 59999998 55555
Q ss_pred ccc
Q 036801 378 WKE 380 (388)
Q Consensus 378 ~~~ 380 (388)
+..
T Consensus 559 c~c 561 (606)
T 3vq2_A 559 CIC 561 (606)
T ss_dssp CSS
T ss_pred cCC
Confidence 433
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.9e-21 Score=178.86 Aligned_cols=297 Identities=16% Similarity=0.187 Sum_probs=193.5
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+++|++|+++++. ++.+ + .+. .+++|++|++++| .+..++. +..+++|++|++.++ .+..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~-~-~~~---~~~~L~~L~l~~n-~i~~~~~----------~~~l~~L~~L~L~~n-~i~~~ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASI-Q-GIE---YLTNLEYLNLNGN-QITDISP----------LSNLVKLTNLYIGTN-KITDI 103 (347)
T ss_dssp HHTTCSEEECCSSC-CCCC-T-TGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCC
T ss_pred hcccccEEEEeCCc-cccc-h-hhh---hcCCccEEEccCC-ccccchh----------hhcCCcCCEEEccCC-cccCc
Confidence 56788888888854 4444 3 366 7888888888887 4555433 456788888888875 56655
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELT 163 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~ 163 (388)
+ . +..+++|++|++++| .+..++. + ..+++|++|++++|.....+ -+...+++|++|+++++....
T Consensus 104 ~-~---~~~l~~L~~L~l~~n-~i~~~~~--~-----~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 104 S-A---LQNLTNLRELYLNED-NISDISP--L-----ANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp G-G---GTTCTTCSEEECTTS-CCCCCGG--G-----TTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred h-H---HcCCCcCCEEECcCC-cccCchh--h-----ccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCC
Confidence 3 1 456888888888877 4554544 2 47788888888877543211 123457788888888765433
Q ss_pred ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccc
Q 036801 164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
.+ .+..+++|+.|++..+.+ ....+.....+|+ .+.+ .+..+ ..+..+++|+.|++++| .++.
T Consensus 170 ---~~--~~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~--~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n-~l~~ 235 (347)
T 4fmz_A 170 ---VT--PIANLTDLYSLSLNYNQI---EDISPLASLTSLH--YFTAYVNQITDI---TPVANMTRLNSLKIGNN-KITD 235 (347)
T ss_dssp ---CG--GGGGCTTCSEEECTTSCC---CCCGGGGGCTTCC--EEECCSSCCCCC---GGGGGCTTCCEEECCSS-CCCC
T ss_pred ---ch--hhccCCCCCEEEccCCcc---cccccccCCCccc--eeecccCCCCCC---chhhcCCcCCEEEccCC-ccCC
Confidence 22 266778888888854555 2222211112222 2333 33333 23567789999999888 4555
Q ss_pred cCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccc
Q 036801 241 LVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLN 320 (388)
Q Consensus 241 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (388)
+++ +..+++|+.|+++++ .+.+++. ...+++|++|++++| .++++.. ...+++|+.|++++
T Consensus 236 ~~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-------------~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 236 LSP-LANLSQLTWLEIGTN-QISDINA---VKDLTKLKMLNVGSN-QISDISV-------------LNNLSQLNSLFLNN 296 (347)
T ss_dssp CGG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-------------GGGCTTCSEEECCS
T ss_pred Ccc-hhcCCCCCEEECCCC-ccCCChh---HhcCCCcCEEEccCC-ccCCChh-------------hcCCCCCCEEECcC
Confidence 544 778889999999876 5655532 457889999999776 3444421 23468999999999
Q ss_pred ccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 321 LESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 321 c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
|. +....... +..+++|++|++++|+ ++.++. ...+++|+.++++
T Consensus 297 n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 297 NQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp SC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS
T ss_pred Cc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehh
Confidence 84 44443221 3578999999999875 555544 5578899999887
No 7
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1e-20 Score=187.59 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=96.8
Q ss_pred CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecch-hhhhccCccCEEeecccccccc-ccccCCCC-
Q 036801 222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTF-LIAKTLVRLREMKIESCAMITE-IVLADDDD- 298 (388)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~- 298 (388)
..+++|+.|++++|......+..+..+++|+.|+++++ .+..++.. .....+++|++|+++++. ++. +.......
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence 46678888888887554445666778888888888864 55554321 123467788888886653 332 22110000
Q ss_pred -Cccc-------c-ccceecc-cccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEE
Q 036801 299 -DHDA-------A-KDEVIAF-SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQ 367 (388)
Q Consensus 299 -~~~~-------~-~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~ 367 (388)
.... . ......+ ++|+.|+++++ .+..++... ..+++|++|+++++ .++.+|.. +..+++|+.++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 0000 0 0001112 68899999887 678888776 48899999999985 78889887 67789999999
Q ss_pred EeccCCcccccc
Q 036801 368 LNMWDEACWAWK 379 (388)
Q Consensus 368 l~~~~~~~~~~~ 379 (388)
++ ++.|.+.
T Consensus 504 l~---~N~~~c~ 512 (562)
T 3a79_B 504 LH---DNPWDCT 512 (562)
T ss_dssp CC---SCCBCCC
T ss_pred ec---CCCcCCC
Confidence 99 6666554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.8e-21 Score=193.31 Aligned_cols=305 Identities=17% Similarity=0.128 Sum_probs=210.4
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+|++|+++++ .++.+++..++ .+++|++|++++| .+..++.. +..+++|++|++.++ .+...++.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~lp~~---------l~~l~~L~~L~l~~n-~l~~~~~~ 319 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFH---CFSGLQELDLTAT-HLSELPSG---------LVGLSTLKKLVLSAN-KFENLCQI 319 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTT---TCTTCSEEECTTS-CCSCCCSS---------CCSCTTCCEEECTTC-CCSBGGGG
T ss_pred ceeEEEeecC-ccCccCHHHhc---cccCCCEEeccCC-ccCCCChh---------hcccccCCEEECccC-CcCcCchh
Confidence 6888888885 56666666677 7899999999988 56666655 667889999999875 57766555
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccc--ccchhhccCccEeeccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKF--LFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~--~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
. +..+++|++|++++|.....++...+ ..+++|++|++++|.+.. .. ......+++|++|+++++....
T Consensus 320 ~--~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~- 390 (606)
T 3t6q_A 320 S--ASNFPSLTHLSIKGNTKRLELGTGCL-----ENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLS- 390 (606)
T ss_dssp C--GGGCTTCSEEECCSCSSCCBCCSSTT-----TTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEE-
T ss_pred h--hhccCcCCEEECCCCCcccccchhhh-----hccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCc-
Confidence 4 66789999999988854445555444 578899999998887631 11 1223557899999998875433
Q ss_pred cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS 244 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 244 (388)
.+...+..+++|+.|++..+.+ ....+ + ..+..+++|+.|++++|......+..
T Consensus 391 --~~~~~~~~l~~L~~L~l~~n~l---~~~~~--------------------~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 391 --LKTEAFKECPQLELLDLAFTRL---KVKDA--------------------Q-SPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp --ECTTTTTTCTTCSEEECTTCCE---ECCTT--------------------C-CTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred --CCHHHhcCCccCCeEECCCCcC---CCccc--------------------c-hhhhCcccCCEEECCCCccCCcCHHH
Confidence 3334677888999999855555 22211 1 34667899999999998654545566
Q ss_pred CCCCCCcCEEEEecCCCce-eecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccc
Q 036801 245 STSFQNLTTLEISHCNGLK-NVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLES 323 (388)
Q Consensus 245 ~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 323 (388)
+..+++|++|+++++.--. .++.......+++|++|++++|. ++.+.... +..+++|+.|+++++.
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~N~- 511 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHA-----------FTSLKMMNHVDLSHNR- 511 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECCSSC-
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhh-----------hccccCCCEEECCCCc-
Confidence 7889999999999764322 12222235678999999998774 44442211 2246899999999874
Q ss_pred cceeccCcccccCCCcceEeccCCcccccCCC-CCcCCCCcceEEEeccCCccccccc
Q 036801 324 LRSFYSGYCALNFPSLERLLVDDCTNMEIFSR-GELSTPMLHKVQLNMWDEACWAWKE 380 (388)
Q Consensus 324 l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~~~~~~~~~ 380 (388)
+..+.... +..++.| .|++++| .+..++. .+..+++|+.++++ ++.|.+..
T Consensus 512 l~~~~~~~-l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~---~N~~~c~c 563 (606)
T 3t6q_A 512 LTSSSIEA-LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLR---QNPLDCTC 563 (606)
T ss_dssp CCGGGGGG-GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECT---TCCEECSG
T ss_pred cCcCChhH-hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCC---CCCccccC
Confidence 54443322 3678888 9999986 4555543 34567899999998 66666544
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1e-20 Score=185.71 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=99.7
Q ss_pred CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc-hhhhhccCccCEEeecccccccc-ccccCCCC-
Q 036801 222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT-FLIAKTLVRLREMKIESCAMITE-IVLADDDD- 298 (388)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~- 298 (388)
..+++|+.|++++|......+..+..+++|++|+++++ .+..++. ......+++|++|+++++. ++. +.......
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccC
Confidence 56788999999888655556677788899999999875 4554332 1134578889999987654 333 32210000
Q ss_pred -Cccc-------c-ccceecc-cccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEE
Q 036801 299 -DHDA-------A-KDEVIAF-SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQ 367 (388)
Q Consensus 299 -~~~~-------~-~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~ 367 (388)
.... . ......+ ++|+.|+++++ .+..++... ..+++|++|++++| .++.+|.. +..+++|+.++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 0000 0 0000112 68888888887 577777765 58999999999986 78889887 66789999999
Q ss_pred EeccCCccccccc
Q 036801 368 LNMWDEACWAWKE 380 (388)
Q Consensus 368 l~~~~~~~~~~~~ 380 (388)
+. ++.|.+..
T Consensus 475 l~---~N~~~c~c 484 (520)
T 2z7x_B 475 LH---TNPWDCSC 484 (520)
T ss_dssp CC---SSCBCCCH
T ss_pred Cc---CCCCcccC
Confidence 99 66655543
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.6e-21 Score=190.21 Aligned_cols=307 Identities=16% Similarity=0.159 Sum_probs=215.5
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+.+++.++++++ .++.+++..++ .+++|++|++++| .+..++... +..+++|++|++.++ .+..+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~ 114 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLD---SFRQVELLNLNDL-QIEEIDTYA--------FAYAHTIQKLYMGFN-AIRYL 114 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHH---HCCCCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHc---cCCCCcEEECCCC-CCCCCChHH--------hcCCCCCCEEECCCC-cCCCC
Confidence 4578899999875 46666555566 7899999999988 466665432 567889999999875 58777
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeeccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVD 160 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~ 160 (388)
++.. ++.+++|++|++++| .+..++...+ ..+++|++|++++|.+ ..++ .+.+++|++|+++++.
T Consensus 115 ~~~~--~~~l~~L~~L~L~~n-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 115 PPHV--FQNVPLLTVLVLERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CBCCTTTTTTCTTCCEEECTTSC
T ss_pred CHHH--HcCCCCCCEEEeeCC-CCCCCCHHHh-----ccCCCCCEEEeeCCcC----CCCChhhhhcCCcCcEEECcCCC
Confidence 7764 677899999999988 6777776655 5788999999998876 3333 3457899999998875
Q ss_pred cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccc
Q 036801 161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLI 239 (388)
Q Consensus 161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~ 239 (388)
... . .+..+++|+.|++..+.+ .. ++ ...+|....+.- .+..++. . ..++|+.|++++|. ++
T Consensus 183 l~~---~---~~~~l~~L~~L~l~~n~l---~~-l~--~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~-l~ 245 (597)
T 3oja_B 183 LTH---V---DLSLIPSLFHANVSYNLL---ST-LA--IPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNN-LT 245 (597)
T ss_dssp CSB---C---CGGGCTTCSEEECCSSCC---SE-EE--CCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSC-CC
T ss_pred CCC---c---ChhhhhhhhhhhcccCcc---cc-cc--CCchhheeeccCCccccccc-c---cCCCCCEEECCCCC-CC
Confidence 332 2 245678888888865665 22 11 112233222222 4444432 1 23689999999884 44
Q ss_pred ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecc
Q 036801 240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLL 319 (388)
Q Consensus 240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (388)
.. +.+..+++|+.|+++++ .+...+.. .+..+++|+.|+++++ .++.+.... ..+++|+.|+++
T Consensus 246 ~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~------------~~l~~L~~L~Ls 309 (597)
T 3oja_B 246 DT-AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG------------QPIPTLKVLDLS 309 (597)
T ss_dssp CC-GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECTTS-CCCEEECSS------------SCCTTCCEEECC
T ss_pred CC-hhhccCCCCCEEECCCC-ccCCCCHH-HhcCccCCCEEECCCC-CCCCCCccc------------ccCCCCcEEECC
Confidence 33 56778899999999975 56665443 3457899999999775 455553221 247899999999
Q ss_pred cccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801 320 NLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 320 ~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 378 (388)
++ .+..++... ..+++|+.|++++| .+..++ ...+++|+.|+++ ++.|.+
T Consensus 310 ~N-~l~~i~~~~--~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~---~N~~~~ 359 (597)
T 3oja_B 310 HN-HLLHVERNQ--PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLS---HNDWDC 359 (597)
T ss_dssp SS-CCCCCGGGH--HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECC---SSCEEH
T ss_pred CC-CCCccCccc--ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEee---CCCCCC
Confidence 97 566777655 67899999999986 566665 3457899999998 655553
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5.6e-21 Score=184.41 Aligned_cols=321 Identities=16% Similarity=0.164 Sum_probs=204.3
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|+++++ .++.+.|..++ ++++|++|++++|.....++... +..+++|++|++.++ .+....+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n~~~~~i~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFS---RLQDLQFLKVEQQTPGLVIRNNT--------FRGLSSLIILKLDYN-QFLQLET 96 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTS---SCTTCCEEECCCCSTTCEECTTT--------TTTCTTCCEEECTTC-TTCEECT
T ss_pred CccCEEEecCC-ccCcCChhHhc---cCccccEEECcCCcccceECccc--------ccccccCCEEeCCCC-ccCccCh
Confidence 57899999985 56777677788 79999999999984333443321 567889999999875 5776655
Q ss_pred CCcccccCCCccEEEeecCCCceE-eccc-ccCCccccccCCccEEEEeecCcccccccc-c---hhhccCccEeecccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMV-KFKR-TTNDLTKKVFPNLEELIVDAKYITTNKFLF-S---KDLLCKLKCLDVEFV 159 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~-~~~~-~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p---~~~l~~L~~L~l~~~ 159 (388)
.. +..+++|++|++++| .++. .+.. .+ ..+++|++|++++|.+. .+ | ...+++|++|+++++
T Consensus 97 ~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~-----~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 97 GA--FNGLANLEVLTLTQC-NLDGAVLSGNFF-----KPLTSLEMLVLRDNNIK----KIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TT--TTTCTTCCEEECTTS-CCBTHHHHSSTT-----TTCTTCCEEECCSSBCC----SCCCCGGGGGCTTCCEEECTTC
T ss_pred hh--ccCcccCCEEeCCCC-CCCccccCcccc-----cCcccCCEEECCCCccC----ccCcccccCCCCcccEEeCCCC
Confidence 54 677899999999888 4443 2222 12 57888999999888763 22 3 345788888888887
Q ss_pred ccccccccchhHhhc----------------------------------CCCccEEEEEeccCCCCceeecCcccccc--
Q 036801 160 DELTTILSLDDFLQR----------------------------------FHTLKVLQIEGYNYWLPKEKVENGVEVII-- 203 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~----------------------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~L-- 203 (388)
.... ..+ ..+.. +++|+.|++..+.+ ....+..+...+
T Consensus 165 ~l~~--~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 165 KVKS--ICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF---KESMAKRFFDAIAG 238 (455)
T ss_dssp CBSC--CCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC---CHHHHHHHHHHTTT
T ss_pred cccc--cCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc---cccchhhhhccccc
Confidence 5432 112 12222 24455555533333 222221111100
Q ss_pred ce-eeeee-------------ccceeccccCCC--CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801 204 RE-AYNCY-------------DMKYILKHESSS--IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT 267 (388)
Q Consensus 204 ~~-~~l~l-------------~l~~i~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 267 (388)
.. ..+.+ .+..... ..+. ..++|+.|++++|......+..+..+++|+.|+++++ .+...+.
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 316 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDN-FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD 316 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCT-TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT
T ss_pred cceeeEeeccccccccccchhhhccCcc-cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh
Confidence 00 11111 0000000 0111 2368999999988655555667788999999999875 5666654
Q ss_pred hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801 268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
. .+..+++|++|+++++ .++.+.... ...+++|+.|+++++ .+..+.... +..+++|++|+++++
T Consensus 317 ~-~~~~l~~L~~L~Ls~N-~l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 317 N-AFWGLTHLLKLNLSQN-FLGSIDSRM-----------FENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN 381 (455)
T ss_dssp T-TTTTCTTCCEEECCSS-CCCEECGGG-----------GTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred h-HhcCcccCCEEECCCC-ccCCcChhH-----------hcCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC
Confidence 3 2457899999999776 344442211 224789999999997 466664332 367899999999985
Q ss_pred cccccCCCCC-cCCCCcceEEEeccCCccccc
Q 036801 348 TNMEIFSRGE-LSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 348 ~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~ 378 (388)
.++.+|... ..+++|+.++++ ++.|.+
T Consensus 382 -~l~~~~~~~~~~l~~L~~L~l~---~N~l~~ 409 (455)
T 3v47_A 382 -QLKSVPDGIFDRLTSLQKIWLH---TNPWDC 409 (455)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred -ccccCCHhHhccCCcccEEEcc---CCCccc
Confidence 677877654 578999999999 444443
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=4.2e-21 Score=197.02 Aligned_cols=328 Identities=16% Similarity=0.083 Sum_probs=199.3
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
+.++++|++|++++|. +....| ++ .+++|++|++++|. +...+.. +..+++|++|++.++ .+.
T Consensus 174 ~~~l~~L~~L~Ls~n~-l~~~~~--~~---~l~~L~~L~Ls~n~-l~~~~~~---------l~~l~~L~~L~Ls~n-~l~ 236 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK-ISGDVD--VS---RCVNLEFLDVSSNN-FSTGIPF---------LGDCSALQHLDISGN-KLS 236 (768)
T ss_dssp TTCCTTCCEEECCSSE-EESCCB--CT---TCTTCCEEECCSSC-CCSCCCB---------CTTCCSCCEEECCSS-CCC
T ss_pred hccCCCCCEEECCCCc-ccccCC--cc---cCCcCCEEECcCCc-CCCCCcc---------cccCCCCCEEECcCC-cCC
Confidence 4688999999999975 443333 35 89999999999984 4332222 668999999999985 566
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeeccc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEF 158 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~ 158 (388)
...+.. +..+++|++|++++|. +....+. ..+++|++|++++|.+. ..+|.. .+++|++|++++
T Consensus 237 ~~~~~~--l~~l~~L~~L~Ls~n~-l~~~~~~-------~~l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 237 GDFSRA--ISTCTELKLLNISSNQ-FVGPIPP-------LPLKSLQYLSLAENKFT---GEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp SCHHHH--TTTCSSCCEEECCSSC-CEESCCC-------CCCTTCCEEECCSSEEE---ESCCCCSCTTCTTCSEEECCS
T ss_pred CcccHH--HhcCCCCCEEECCCCc-ccCccCc-------cccCCCCEEECcCCccC---CccCHHHHhhcCcCCEEECcC
Confidence 544433 6679999999999994 4432222 26899999999998873 244443 258999999999
Q ss_pred cccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCC-ccceEEec
Q 036801 159 VDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMD-NLVILRVS 233 (388)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~-~L~~L~l~ 233 (388)
+.... ..|. .+..+++|++|++..+.+ .+.+|...+.++.+ +.+++ .+.+..+ ..+..++ +|+.|+++
T Consensus 304 n~l~~--~~p~-~~~~l~~L~~L~L~~n~l---~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 304 NHFYG--AVPP-FFGSCSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEEE--CCCG-GGGGCTTCCEEECCSSEE---EEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCSEEECC
T ss_pred CcCCC--ccch-HHhcCCCccEEECCCCcc---cCcCCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcCCcEEEcc
Confidence 86543 3443 688999999999966666 45666544444444 34444 3332222 3333343 56666666
Q ss_pred CCccccccCCCCCC--CCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC------------CC
Q 036801 234 SCHHLINLVPSSTS--FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD------------DD 299 (388)
Q Consensus 234 ~c~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~------------~~ 299 (388)
+|.....++..+.. +++|+.|++++|.....++. .+..+++|++|+++++.-...+...... .-
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 55443333333332 44555555554421112222 1234455555555443211010000000 00
Q ss_pred ccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
..........+++|+.|++.++.-...++... ..+++|++|++++|.-...+|..+..+++|+.++++.
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 00001112346778888888875444555543 6788888888888765557787777788888888874
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.6e-21 Score=194.38 Aligned_cols=310 Identities=14% Similarity=0.102 Sum_probs=217.4
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeecccccccc--Eeeeccccccccccccc------ccccceEecc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLE--ELIVMDNQEEDRNNIVI------FPRLQYLKMY 75 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~~~~~~------l~~L~~L~l~ 75 (388)
++++|++|++++|..... .|..++ ++++|++|++++|..+. .+|.. +.. +++|++|++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p~~l~---~l~~L~~L~Ls~n~~l~~~~lp~~---------~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LPTFLK---ALPEMQLINVACNRGISGEQLKDD---------WQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CCTTTT---TCSSCCEEECTTCTTSCHHHHHHH---------HHHHHHSGGGGTCCEEECC
T ss_pred ccCCCCEEEecCCcCCcc-ChHHHh---cCCCCCEEECcCCCCCccccchHH---------HHhhhccccCCCCCEEECC
Confidence 799999999999865544 478888 89999999999995354 35544 334 4999999999
Q ss_pred cccccccccC-CCcccccCCCccEEEeecCCCce-EecccccCCccccccCCccEEEEeecCccccccccchh--hccC-
Q 036801 76 DLEKLTSFST-GDVHMLEFPSLKELWISRCPGFM-VKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD--LLCK- 150 (388)
Q Consensus 76 ~~~~l~~~~~-~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~--~l~~- 150 (388)
++ .+..++. .. +..+++|++|++++| .+. .+| .. ..+++|++|++++|.+ ..+|.. .+++
T Consensus 314 ~n-~l~~ip~~~~--l~~l~~L~~L~L~~N-~l~g~ip-~~------~~l~~L~~L~L~~N~l----~~lp~~l~~l~~~ 378 (636)
T 4eco_A 314 YN-NLKTFPVETS--LQKMKKLGMLECLYN-QLEGKLP-AF------GSEIKLASLNLAYNQI----TEIPANFCGFTEQ 378 (636)
T ss_dssp SS-CCSSCCCHHH--HTTCTTCCEEECCSC-CCEEECC-CC------EEEEEESEEECCSSEE----EECCTTSEEECTT
T ss_pred CC-cCCccCchhh--hccCCCCCEEeCcCC-cCccchh-hh------CCCCCCCEEECCCCcc----ccccHhhhhhccc
Confidence 75 6777665 12 667999999999998 555 666 33 5889999999999877 455553 4677
Q ss_pred ccEeeccccccccccccchhHhhc--CCCccEEEEEeccCCCCceeecCcccc------ccce-eeeee---ccceeccc
Q 036801 151 LKCLDVEFVDELTTILSLDDFLQR--FHTLKVLQIEGYNYWLPKEKVENGVEV------IIRE-AYNCY---DMKYILKH 218 (388)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~~~------~L~~-~~l~l---~l~~i~~~ 218 (388)
|++|+++++.... +|. .+.. +++|+.|++..+.+ ....|..+.+ .+.+ +.+++ .+..++.
T Consensus 379 L~~L~Ls~N~l~~---lp~-~~~~~~l~~L~~L~Ls~N~l---~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~- 450 (636)
T 4eco_A 379 VENLSFAHNKLKY---IPN-IFDAKSVSVMSAIDFSYNEI---GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK- 450 (636)
T ss_dssp CCEEECCSSCCSS---CCS-CCCTTCSSCEEEEECCSSCT---TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-
T ss_pred CcEEEccCCcCcc---cch-hhhhcccCccCEEECcCCcC---CCcchhhhcccccccccCCCCCEEECcCCccCcCCH-
Confidence 9999999876332 443 3333 34899999966676 4444433320 1222 23444 5556654
Q ss_pred cCCCCCCccceEEecCCccccccCCCCCC--------CCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccc
Q 036801 219 ESSSIMDNLVILRVSSCHHLINLVPSSTS--------FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITE 290 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 290 (388)
..+..+++|+.|++++|. ++.+|..... +++|+.|+++++ .+..++.......+++|++|+++++ .++.
T Consensus 451 ~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ 527 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSK 527 (636)
T ss_dssp HHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSS
T ss_pred HHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCC
Confidence 445567899999999884 4567664432 238999999975 5667765422137899999999775 3444
Q ss_pred ccccCCCCCccccccceecccccceeecccc------cccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcc
Q 036801 291 IVLADDDDDHDAAKDEVIAFSKLNELRLLNL------ESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLH 364 (388)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c------~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 364 (388)
+... ...+++|+.|+++++ .-...++... ..+++|++|++++| .++.+|..+. ++|+
T Consensus 528 ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~ 590 (636)
T 4eco_A 528 FPTQ------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-DIRKVNEKIT--PNIS 590 (636)
T ss_dssp CCCG------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSCCC--TTCC
T ss_pred cChh------------hhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-cCCccCHhHh--CcCC
Confidence 3221 224789999999653 2345566654 67999999999986 4588988764 8999
Q ss_pred eEEEe
Q 036801 365 KVQLN 369 (388)
Q Consensus 365 ~l~l~ 369 (388)
.++++
T Consensus 591 ~L~Ls 595 (636)
T 4eco_A 591 VLDIK 595 (636)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99998
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.4e-20 Score=186.00 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=80.3
Q ss_pred CCCCCccceEEecCCccccccC---CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC
Q 036801 221 SSIMDNLVILRVSSCHHLINLV---PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD 297 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~ 297 (388)
++.+++|+.|++++| .++.++ ..+..+++|++|++++| .+..++.. ...+++|++|+++++. ++.+......
T Consensus 357 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~~~~L~~L~Ls~N~-l~~l~~~~~~ 431 (549)
T 2z81_A 357 KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS--CQWPEKMRFLNLSSTG-IRVVKTCIPQ 431 (549)
T ss_dssp TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC--CCCCTTCCEEECTTSC-CSCCCTTSCT
T ss_pred hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChh--hcccccccEEECCCCC-cccccchhcC
Confidence 445566666666665 233332 12345556666666654 44444431 2344555555554442 2222110000
Q ss_pred CCc----c--ccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEec
Q 036801 298 DDH----D--AAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLNM 370 (388)
Q Consensus 298 ~~~----~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~ 370 (388)
.-. . ........+++|++|+++++ .+..++.. ..+++|+.|+++++ .++.++.. +..+++|+.+++.
T Consensus 432 ~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~- 505 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH- 505 (549)
T ss_dssp TCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECC-
T ss_pred CceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEec-
Confidence 000 0 00000114688999999987 57777763 46899999999986 66666554 5678999999998
Q ss_pred cCCccccc
Q 036801 371 WDEACWAW 378 (388)
Q Consensus 371 ~~~~~~~~ 378 (388)
++.|.+
T Consensus 506 --~N~~~~ 511 (549)
T 2z81_A 506 --TNPWDC 511 (549)
T ss_dssp --SSCBCC
T ss_pred --CCCccC
Confidence 555544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.9e-21 Score=194.08 Aligned_cols=319 Identities=12% Similarity=0.105 Sum_probs=221.2
Q ss_pred CcCCCcccEEeEecCCCCccc-----------------cccccc-ccccccccceeeccccccccEeeeccccccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCL-----------------FSSSTV-SNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI 63 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~-----------------~p~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 63 (388)
++++++|++|++++|. ++.. .|..++ . ++++|++|++++|.....+|.. +
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~--~l~~L~~L~L~~n~l~~~~p~~---------l 269 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWD--NLKDLTDVEVYNCPNLTKLPTF---------L 269 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGG--GCTTCCEEEEECCTTCSSCCTT---------T
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhc--ccCCCCEEEecCCcCCccChHH---------H
Confidence 4678999999999976 6652 366555 2 4999999999999656666654 7
Q ss_pred ccccccceEeccccccccc--ccCCCccccc------CCCccEEEeecCCCceEecc--cccCCccccccCCccEEEEee
Q 036801 64 VIFPRLQYLKMYDLEKLTS--FSTGDVHMLE------FPSLKELWISRCPGFMVKFK--RTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 64 ~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~------~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~~l~~L~~L~i~~ 133 (388)
..+++|++|++.++..+.. +|.. ++. +++|++|++++| .++.+|. .. ..+++|++|++++
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~---~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l------~~l~~L~~L~L~~ 339 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDD---WQALADAPVGEKIQIIYIGYN-NLKTFPVETSL------QKMKKLGMLECLY 339 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHH---HHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH------TTCTTCCEEECCS
T ss_pred hcCCCCCEEECcCCCCCccccchHH---HHhhhccccCCCCCEEECCCC-cCCccCchhhh------ccCCCCCEEeCcC
Confidence 7899999999998643664 4433 333 499999999998 5666766 34 5899999999999
Q ss_pred cCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCC-ccEEEEEeccCCCCceeecCcccc----ccceee
Q 036801 134 KYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHT-LKVLQIEGYNYWLPKEKVENGVEV----IIREAY 207 (388)
Q Consensus 134 ~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~~~----~L~~~~ 207 (388)
|.+. ..+| .+.+++|+.|+++++.... +|. .+..+++ |+.|++..+.+ + .+|..+.. +|+..+
T Consensus 340 N~l~---g~ip~~~~l~~L~~L~L~~N~l~~---lp~-~l~~l~~~L~~L~Ls~N~l---~-~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 340 NQLE---GKLPAFGSEIKLASLNLAYNQITE---IPA-NFCGFTEQVENLSFAHNKL---K-YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CCCE---EECCCCEEEEEESEEECCSSEEEE---CCT-TSEEECTTCCEEECCSSCC---S-SCCSCCCTTCSSCEEEEE
T ss_pred CcCc---cchhhhCCCCCCCEEECCCCcccc---ccH-hhhhhcccCcEEEccCCcC---c-ccchhhhhcccCccCEEE
Confidence 8873 1444 3457899999999986433 554 4778898 99999977777 4 45643321 233222
Q ss_pred eee-ccceeccccCCC-------CCCccceEEecCCccccccCCCC-CCCCCcCEEEEecCCCceeecchhhhh------
Q 036801 208 NCY-DMKYILKHESSS-------IMDNLVILRVSSCHHLINLVPSS-TSFQNLTTLEISHCNGLKNVLTFLIAK------ 272 (388)
Q Consensus 208 l~l-~l~~i~~~~~l~-------~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~------ 272 (388)
+.. .+.+..+ ..+. .+++|+.|++++| .++.+|... ..+++|+.|+++++ .+..++...+..
T Consensus 409 Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 409 FSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFK 485 (636)
T ss_dssp CCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECT
T ss_pred CcCCcCCCcch-hhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccccc
Confidence 222 4444333 4444 5678999999887 455666544 45788999999865 555665532211
Q ss_pred ccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccC------
Q 036801 273 TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD------ 346 (388)
Q Consensus 273 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~------ 346 (388)
.+++|++|+++++ .++.+..... ...+++|+.|+++++ .+..++... ..+++|+.|++++
T Consensus 486 ~l~~L~~L~Ls~N-~l~~lp~~~~----------~~~l~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 486 NTYLLTSIDLRFN-KLTKLSDDFR----------ATTLPYLVGIDLSYN-SFSKFPTQP--LNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TGGGCCEEECCSS-CCCBCCGGGS----------TTTCTTCCEEECCSS-CCSSCCCGG--GGCSSCCEEECCSCBCTTC
T ss_pred ccCCccEEECcCC-cCCccChhhh----------hccCCCcCEEECCCC-CCCCcChhh--hcCCCCCEEECCCCccccc
Confidence 1228999999765 3544432211 014689999999986 466677765 6789999999954
Q ss_pred CcccccCCCCCcCCCCcceEEEec
Q 036801 347 CTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 347 c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
+...+.+|..+..+++|+.++++.
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CcccccChHHHhcCCCCCEEECCC
Confidence 334567888888899999999983
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-20 Score=178.69 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=207.7
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++++.|++.++ .++.++... +..+++|++|++.++ .+..++... +..+++|++|++++| .+..++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~--------~~~l~~L~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAAL--------LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFN-AIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHH--------HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCCCCC
T ss_pred ccCCceEEEecCC-chhhCChhH--------hcccccCcEEECCCC-cccccChhh--ccCCCCcCEEECCCC-CCCcCC
Confidence 5789999999998 577777652 457899999999985 688887764 678999999999998 576676
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
+..+ ..+++|++|++++|.+ ..+|. ..+++|++|+++++.... .+...+..+++|+.|++..+.+
T Consensus 110 ~~~~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 110 PHVF-----QNVPLLTVLVLERNDL----SSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp TTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTSSCTTCCEEECCSSCC
T ss_pred HHHh-----cCCCCCCEEECCCCcc----CcCCHHHhcCCCCCcEEECCCCccCc---cChhhccCCCCCCEEECCCCcC
Confidence 6655 6899999999999987 56665 347899999999976433 4444678899999999966777
Q ss_pred CCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801 189 WLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT 267 (388)
Q Consensus 189 ~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 267 (388)
+. ++.+..++|+...+.. .+..+ ...++|++|+++++ .+..++. ..+++|+.|+++++ .+.+.+
T Consensus 178 ---~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~n-~l~~~~- 242 (390)
T 3o6n_A 178 ---TH-VDLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHN-SINVVRG--PVNVELTILKLQHN-NLTDTA- 242 (390)
T ss_dssp ---SB-CCGGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSS-CCCEEEC--CCCSSCCEEECCSS-CCCCCG-
T ss_pred ---Cc-cccccccccceeeccccccccc------CCCCcceEEECCCC-eeeeccc--cccccccEEECCCC-CCcccH-
Confidence 32 3434444444333222 33333 23468999999887 4444443 34578999999976 555553
Q ss_pred hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801 268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
....+++|++|+++++. ++.+.... ...+++|+.|++.++ .+..++... ..+++|++|++++|
T Consensus 243 --~l~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 243 --WLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN 305 (390)
T ss_dssp --GGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS
T ss_pred --HHcCCCCccEEECCCCc-CCCcChhH-----------ccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC
Confidence 34588999999997763 44442211 224689999999996 678887654 67899999999997
Q ss_pred cccccCCCCCcCCCCcceEEEec
Q 036801 348 TNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 348 ~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
.++.+|..+..+++|+.+++++
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCS
T ss_pred -cceecCccccccCcCCEEECCC
Confidence 6778887777789999999984
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.5e-20 Score=187.04 Aligned_cols=216 Identities=12% Similarity=0.069 Sum_probs=99.4
Q ss_pred CccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee---ccceeccccCCCCCC
Q 036801 150 KLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY---DMKYILKHESSSIMD 225 (388)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l---~l~~i~~~~~l~~l~ 225 (388)
+|+.|+++++.... .+...+..+++|+.|++..+.+ ...++...+.++.+ ..+++ .+..+.+ ..+..++
T Consensus 382 ~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~ 454 (680)
T 1ziw_A 382 PLHILNLTKNKISK---IESDAFSWLGHLEVLDLGLNEI---GQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVP 454 (680)
T ss_dssp CCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCC---EEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCT
T ss_pred cCceEECCCCCCCe---EChhhhhCCCCCCEEeCCCCcC---ccccCcccccCcccccEEecCCCCcceeCh-hhhhcCc
Confidence 45555555543222 2223455666666666644454 33344333333333 23333 3334433 4445555
Q ss_pred ccceEEecCCcc--ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc---
Q 036801 226 NLVILRVSSCHH--LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH--- 300 (388)
Q Consensus 226 ~L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~--- 300 (388)
+|+.|++.+|.. +...|..+..+++|+.|+++++ .+..++.. ....+++|++|+++++ .++.+.........
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYF 531 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCC-CccccchhhccCCcchh
Confidence 566666555432 1333444555555666666543 34444332 1234555555555443 23222110000000
Q ss_pred -----------------ccc-ccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCc--CC
Q 036801 301 -----------------DAA-KDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGEL--ST 360 (388)
Q Consensus 301 -----------------~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~ 360 (388)
... ...+..+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.++.... .+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKKVFGPAF 608 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChhHhcccc
Confidence 000 000123456666666553 455555442 245566667766664 5555544322 35
Q ss_pred CCcceEEEeccCCcccccccC
Q 036801 361 PMLHKVQLNMWDEACWAWKEG 381 (388)
Q Consensus 361 ~~L~~l~l~~~~~~~~~~~~~ 381 (388)
++|+.+++. ++.|.+..+
T Consensus 609 ~~L~~l~l~---~N~~~c~c~ 626 (680)
T 1ziw_A 609 RNLTELDMR---FNPFDCTCE 626 (680)
T ss_dssp TTCSEEECT---TCCCCBCCC
T ss_pred cccCEEEcc---CCCcccCCc
Confidence 677777777 666665443
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.3e-20 Score=193.62 Aligned_cols=317 Identities=15% Similarity=0.124 Sum_probs=216.1
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccE--eeecccccccccccccccccceEecccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEE--LIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
++++|++|++++|.....+ |.+++ ++++|++|++++|..+.. +|.... ... .....+++|+.|++.++ .+.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i-P~~l~---~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-~~~~~l~~L~~L~Ls~N-~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL-PDFLY---DLPELQSLNIACNRGISAAQLKADWT-RLA-DDEDTGPKIQIFYMGYN-NLE 561 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC-CGGGG---GCSSCCEEECTTCTTSCHHHHHHHHH-HHH-HCTTTTTTCCEEECCSS-CCC
T ss_pred cCCCCCEEECcCCCCCccC-hHHHh---CCCCCCEEECcCCCCcccccchHHHH-hhh-hcccccCCccEEEeeCC-cCC
Confidence 7999999999998655544 77788 899999999999853443 444310 000 01335669999999975 677
Q ss_pred cccC-CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccC-ccEeecc
Q 036801 82 SFST-GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCK-LKCLDVE 157 (388)
Q Consensus 82 ~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~-L~~L~l~ 157 (388)
.++. .. +..+++|+.|++++| .+..+| .. ..+++|+.|++++|.+ ..+|. ..+++ |+.|+++
T Consensus 562 ~ip~~~~--l~~L~~L~~L~Ls~N-~l~~lp-~~------~~L~~L~~L~Ls~N~l----~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 562 EFPASAS--LQKMVKLGLLDCVHN-KVRHLE-AF------GTNVKLTDLKLDYNQI----EEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp BCCCHHH--HTTCTTCCEEECTTS-CCCBCC-CC------CTTSEESEEECCSSCC----SCCCTTSCEECTTCCEEECC
T ss_pred ccCChhh--hhcCCCCCEEECCCC-Ccccch-hh------cCCCcceEEECcCCcc----ccchHHHhhccccCCEEECc
Confidence 7766 12 667999999999988 455666 33 5889999999999887 45564 34677 9999999
Q ss_pred ccccccccccchhHhhcCC--CccEEEEEeccCCCCceeecCc---c--c--cccceeeeee-ccceeccccCCCCCCcc
Q 036801 158 FVDELTTILSLDDFLQRFH--TLKVLQIEGYNYWLPKEKVENG---V--E--VIIREAYNCY-DMKYILKHESSSIMDNL 227 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~---~--~--~~L~~~~l~l-~l~~i~~~~~l~~l~~L 227 (388)
++.... +|. .+..++ +|+.|++..|.+ ...+|.- . + .+|+...+.- .+..++. ..+..+++|
T Consensus 628 ~N~L~~---lp~-~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L 699 (876)
T 4ecn_A 628 HNKLKY---IPN-IFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPI 699 (876)
T ss_dssp SSCCCS---CCS-CCCTTCSSCEEEEECCSSCT---TTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCC
T ss_pred CCCCCc---Cch-hhhccccCCCCEEECcCCcC---CCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCC
Confidence 876332 443 344443 499999966666 3333211 0 0 1233222222 5555554 344467899
Q ss_pred ceEEecCCccccccCCCCCC--------CCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801 228 VILRVSSCHHLINLVPSSTS--------FQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD 299 (388)
Q Consensus 228 ~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 299 (388)
+.|++++| .++.+|..... +++|+.|++++| .+..++.......+++|+.|+++++ .++.+...
T Consensus 700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~----- 771 (876)
T 4ecn_A 700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ----- 771 (876)
T ss_dssp SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-----
T ss_pred CEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchh-----
Confidence 99999988 55577665433 338999999976 6667765421137899999999765 35443221
Q ss_pred ccccccceecccccceeeccccc------ccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLE------SLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
...+++|+.|++++++ -...++... ..+++|+.|++++| .++.+|..+. ++|+.|+++
T Consensus 772 -------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 772 -------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp -------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECC
T ss_pred -------hhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECC
Confidence 2357899999997733 344566554 67999999999987 4588998864 799999998
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=8.9e-20 Score=182.40 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
.++++|++|++++| .++.+.|.+|+ ++++|++|++++| .+..++.. .+..+++|++|++.++ .+..
T Consensus 53 ~~l~~L~~L~Ls~n-~l~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~p~--------~~~~l~~L~~L~L~~n-~l~~ 118 (606)
T 3vq2_A 53 SNFSELQWLDLSRC-EIETIEDKAWH---GLHHLSNLILTGN-PIQSFSPG--------SFSGLTSLENLVAVET-KLAS 118 (606)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTTTT---TCTTCCEEECTTC-CCCCCCTT--------SSTTCTTCCEEECTTS-CCCC
T ss_pred cCCccCcEEeCCCC-cccccCHHHhh---chhhcCEeECCCC-cccccChh--------hcCCcccCCEEEccCC-cccc
Confidence 34556666666654 34444454555 5666666666655 23333221 1456677777777654 4555
Q ss_pred ccCCCcccccCCCccEEEeecCCCceE--ecccccCCccccccCCccEEEEeecCc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMV--KFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.++.. ++.+++|++|++++| .+.. +|... ..+++|++|++++|.+
T Consensus 119 ~~~~~--~~~l~~L~~L~L~~n-~l~~~~lp~~~------~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 119 LESFP--IGQLITLKKLNVAHN-FIHSCKLPAYF------SNLTNLVHVDLSYNYI 165 (606)
T ss_dssp SSSSC--CTTCTTCCEEECCSS-CCCCCCCCGGG------GTCTTCCEEECCSSCC
T ss_pred ccccc--cCCCCCCCEEeCCCC-cccceechHhH------hhcCCCCEEEccCCcc
Confidence 55443 556777777777766 3332 33333 4678888888887765
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=7.3e-20 Score=177.77 Aligned_cols=271 Identities=14% Similarity=0.101 Sum_probs=179.8
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
+.++++|++|++++| .++.+.|..|+ ++++|++|++++| .+..++... +..+++|++|++.++ .+.
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~i~ 117 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVEPGAFN---NLFNLRTLGLRSN-RLKLIPLGV--------FTGLSNLTKLDISEN-KIV 117 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCCSCCTTS--------STTCTTCCEEECTTS-CCC
T ss_pred ccCCCCCCEEECCCC-ccCEeChhhhh---CCccCCEEECCCC-cCCccCccc--------ccCCCCCCEEECCCC-ccc
Confidence 467899999999986 57777788888 8999999999998 566665432 467899999999975 677
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEF 158 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~ 158 (388)
...+.. +..+++|++|+++++ .+..+....+ ..+++|++|++++|.+ ..++. ..+++|+.|++++
T Consensus 118 ~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 118 ILLDYM--FQDLYNLKSLEVGDN-DLVYISHRAF-----SGLNSLEQLTLEKCNL----TSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EECTTT--TTTCTTCCEEEECCT-TCCEECTTSS-----TTCTTCCEEEEESCCC----SSCCHHHHTTCTTCCEEEEES
T ss_pred cCChhH--ccccccCCEEECCCC-ccceeChhhc-----cCCCCCCEEECCCCcC----cccChhHhcccCCCcEEeCCC
Confidence 776664 678999999999988 5666665555 6899999999999887 44554 4578999999998
Q ss_pred cccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCcccc--ccceeeeee-ccceeccccCCCCCCccceEEecC
Q 036801 159 VDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEV--IIREAYNCY-DMKYILKHESSSIMDNLVILRVSS 234 (388)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~--~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~ 234 (388)
+.... .+...+..+++|+.|++ +++.+ ..++...+. +|+..++.- .+..++. ..+..+++|+.|++++
T Consensus 186 n~i~~---~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 186 LNINA---IRDYSFKRLYRLKVLEISHWPYL----DTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCCCE---ECTTCSCSCTTCCEEEEECCTTC----CEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTTCTTCCEEECCS
T ss_pred CcCcE---eChhhcccCcccceeeCCCCccc----cccCcccccCccccEEECcCCcccccCH-HHhcCccccCeeECCC
Confidence 76443 34446788999999999 55444 444433332 233222222 4444443 4455666677777766
Q ss_pred CccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccccc
Q 036801 235 CHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKL 313 (388)
Q Consensus 235 c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L 313 (388)
|. ++.++ ..+..+++|+.|+++++ .+..+... .+..+++|+.|+++++ .++.+.... +..+++|
T Consensus 258 n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-----------~~~l~~L 322 (477)
T 2id5_A 258 NP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESV-----------FHSVGNL 322 (477)
T ss_dssp SC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGG-----------BSCGGGC
T ss_pred Cc-CCccChhhccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhH-----------cCCCccc
Confidence 63 33333 23456666777777654 44444333 2345666777777554 333332111 1234666
Q ss_pred ceeecccc
Q 036801 314 NELRLLNL 321 (388)
Q Consensus 314 ~~L~l~~c 321 (388)
+.|++.++
T Consensus 323 ~~L~l~~N 330 (477)
T 2id5_A 323 ETLILDSN 330 (477)
T ss_dssp CEEECCSS
T ss_pred CEEEccCC
Confidence 66666654
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=8.4e-20 Score=181.13 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=43.5
Q ss_pred cccccceeeccccccccee-ccCcccccCCCcceEeccCCcccccCCC-CCcCCCCcceEEEeccCCccccc
Q 036801 309 AFSKLNELRLLNLESLRSF-YSGYCALNFPSLERLLVDDCTNMEIFSR-GELSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 309 ~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~~~~~~~ 378 (388)
.+++|+.|++++| .+..+ +... ..+++|++|++++| .++.++. .+..+++|+.++++ ++.|.+
T Consensus 468 ~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~---~N~~~~ 532 (570)
T 2z63_A 468 ELRNLTFLDLSQC-QLEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH---TNPWDC 532 (570)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred cccCCCEEECCCC-ccccCChhhh--hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec---CCcccC
Confidence 4678888888887 35555 3333 57888999999886 5666554 35678899999988 444443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.2e-19 Score=174.98 Aligned_cols=306 Identities=14% Similarity=0.063 Sum_probs=200.8
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
++++++|++|++++|.....+.+..+. ++++|++|++++| .+..+.... +..+++|++|++.++ .+.
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~ 116 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYN-QFLQLETGA--------FNGLANLEVLTLTQC-NLD 116 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTT---TCTTCCEEECTTC-TTCEECTTT--------TTTCTTCCEEECTTS-CCB
T ss_pred hccCccccEEECcCCcccceECccccc---ccccCCEEeCCCC-ccCccChhh--------ccCcccCCEEeCCCC-CCC
Confidence 467899999999998655566667778 8999999999998 455553321 667899999999875 465
Q ss_pred c-ccCCCcccccCCCccEEEeecCCCceEe-cccccCCccccccCCccEEEEeecCcccccc----cc------------
Q 036801 82 S-FSTGDVHMLEFPSLKELWISRCPGFMVK-FKRTTNDLTKKVFPNLEELIVDAKYITTNKF----LF------------ 143 (388)
Q Consensus 82 ~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~----~l------------ 143 (388)
+ .+... .+..+++|++|++++| .+..+ +...+ ..+++|++|++++|.+..... .+
T Consensus 117 ~~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 117 GAVLSGN-FFKPLTSLEMLVLRDN-NIKKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp THHHHSS-TTTTCTTCCEEECCSS-BCCSCCCCGGG-----GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred ccccCcc-cccCcccCCEEECCCC-ccCccCccccc-----CCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 4 22211 2556889999999888 44444 32223 578888888888876531100 00
Q ss_pred ------c-----------hhhccCccEeeccccccccccccchhHhh--cCCCccEEEE-EeccCCCCceeec-------
Q 036801 144 ------S-----------KDLLCKLKCLDVEFVDELTTILSLDDFLQ--RFHTLKVLQI-EGYNYWLPKEKVE------- 196 (388)
Q Consensus 144 ------p-----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~L~~L~l-~~~~l~~~~~~~~------- 196 (388)
+ ...+++|++|+++++.... ..+..... ..++|+.|.+ .+... ...+.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~ 264 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNM---GSSFGHTNFKDP 264 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH--HHHHHHHHHTTTCCEEEEECTTCTTT---SCCTTCCSSCCC
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccc--cchhhhhccccccceeeEeecccccc---ccccchhhhccC
Confidence 0 0123578999998875432 22221211 2378888888 43222 11110
Q ss_pred -Cccc-----cccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchh
Q 036801 197 -NGVE-----VIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFL 269 (388)
Q Consensus 197 -~~~~-----~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 269 (388)
...+ .+++..++.- .+.++.+ ..+..+++|+.|++++|......+..+..+++|++|+++++ .+..++..
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~- 341 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSR- 341 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGG-
T ss_pred cccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChh-
Confidence 0111 1233222222 5666665 77888999999999998544444557789999999999976 56666544
Q ss_pred hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801 270 IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN 349 (388)
Q Consensus 270 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 349 (388)
....+++|++|+++++. ++.+.... +..+++|+.|++.++ .++.++... +..+++|++|++++++-
T Consensus 342 ~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNH-IRALGDQS-----------FLGLPNLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred HhcCcccCCEEECCCCc-ccccChhh-----------ccccccccEEECCCC-ccccCCHhH-hccCCcccEEEccCCCc
Confidence 34578999999997763 54442211 224799999999996 677777654 36789999999998653
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=9.4e-20 Score=180.04 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCccceEEecCCccccccC---CCCCCCCCcCEEEEecCCCceeecc-hhhhhccCccCEEeeccccccccccccCCCC
Q 036801 223 IMDNLVILRVSSCHHLINLV---PSSTSFQNLTTLEISHCNGLKNVLT-FLIAKTLVRLREMKIESCAMITEIVLADDDD 298 (388)
Q Consensus 223 ~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 298 (388)
.+++|+.|++++|......+ ..+..+++|++|+++++ .+..++. ......+++|++|+++++ .++.+...
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---- 405 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS---- 405 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC----
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChh----
Confidence 46777777777775443332 23466778888888765 4555542 123456788888888766 44444321
Q ss_pred CccccccceecccccceeecccccccceeccCc----------------ccccCCCcceEeccCCcccccCCCCCcCCCC
Q 036801 299 DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGY----------------CALNFPSLERLLVDDCTNMEIFSRGELSTPM 362 (388)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 362 (388)
...+++|+.|+++++. +..++... +...+++|++|++++| +++.+|.. ..+++
T Consensus 406 --------~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~l~~ 474 (549)
T 2z81_A 406 --------CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA-SLFPV 474 (549)
T ss_dssp --------CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG-GGCTT
T ss_pred --------hcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc-ccCcc
Confidence 1123455555555432 22222110 0125678888888875 66777763 45788
Q ss_pred cceEEEec
Q 036801 363 LHKVQLNM 370 (388)
Q Consensus 363 L~~l~l~~ 370 (388)
|+.++++.
T Consensus 475 L~~L~Ls~ 482 (549)
T 2z81_A 475 LLVMKISR 482 (549)
T ss_dssp CCEEECCS
T ss_pred CCEEecCC
Confidence 88888884
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.2e-19 Score=178.11 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=58.1
Q ss_pred CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcc
Q 036801 222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHD 301 (388)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~ 301 (388)
..+++|+.|++++|. +..+++.+..+++|+.|+++++ .+...+.......+++|++|++++|. ++......
T Consensus 370 ~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------ 440 (570)
T 2z63_A 370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI------ 440 (570)
T ss_dssp HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTT------
T ss_pred cccCccCEEECCCCc-cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccchhh------
Confidence 344555555555552 3333333445555555555543 23222221122345555555555443 21111100
Q ss_pred ccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 302 AAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
...+++|+.|++.+|.-. ..++... ..+++|+.|++++|.--...|..+..+++|+.++++
T Consensus 441 -----~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 441 -----FNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp -----TTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----hhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 112455555555555322 1343322 445555555555543222224444455555555555
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.7e-19 Score=181.32 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=28.9
Q ss_pred ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
..+++|++|++.++ .+..+++.. +..+++|++|++++| .+...+...+ ..+++|++|++++|.+
T Consensus 94 ~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 94 AFCTNLTELHLMSN-SIQKIKNNP--FVKQKNLITLDLSHN-GLSSTKLGTQ-----VQLENLQELLLSNNKI 157 (680)
T ss_dssp TTCTTCSEEECCSS-CCCCCCSCT--TTTCTTCCEEECCSS-CCSCCCCCSS-----SCCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCC-ccCccChhH--ccccCCCCEEECCCC-cccccCchhh-----cccccCCEEEccCCcc
Confidence 34455555555442 344444332 344555555555554 2222222222 3455555555555544
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=3.9e-19 Score=172.15 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH 300 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 300 (388)
+..+++|+.|++++| .++.+++ +..+++|+.|+++++ .+..++. ...+++|+.|++++|. ++.+..
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------- 326 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP------- 326 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG-------
T ss_pred hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh-------
Confidence 344555555555555 2333322 455566666666654 3444433 2356667777775552 332221
Q ss_pred cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
...+++|+.|++.+| .+..++. +..+++|+.|++++|. +..++. ...+++|+.+++.+
T Consensus 327 ------~~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 327 ------VSSLTKLQRLFFYNN-KVSDVSS---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLND 384 (466)
T ss_dssp ------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCC
T ss_pred ------hccCccCCEeECCCC-ccCCchh---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccC
Confidence 124678888888887 4555532 2578899999998875 444333 55778999998883
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=5.3e-20 Score=189.04 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=33.4
Q ss_pred ccccceeecccccccceeccCcccccCCCcceEeccC------CcccccCCCCCcCCCCcceEEEe
Q 036801 310 FSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD------CTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 310 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
+++|+.|+++++ .+..++... ..+++|+.|++++ |.....+|..+..+++|+.|+++
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQP--LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCGG--GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCcCEEEeCCC-CCCccchhh--hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 466666666665 344455443 4566666666654 22334556666666677777666
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.5e-19 Score=168.17 Aligned_cols=275 Identities=16% Similarity=0.156 Sum_probs=197.4
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|++.++ .+..++. +..+++|++|++.++ .+.+++. +..+++|++|++++| .++.++
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~----------~~~~~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~L~~n-~i~~~~ 104 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQG----------IEYLTNLEYLNLNGN-QITDISP----LSNLVKLTNLYIGTN-KITDIS 104 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTT----------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCG
T ss_pred hcccccEEEEeCC-ccccchh----------hhhcCCccEEEccCC-ccccchh----hhcCCcCCEEEccCC-cccCch
Confidence 7999999999998 4555432 567999999999986 6776653 346999999999998 666554
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL 190 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 190 (388)
. + ..+++|++|++++|.+ ..++ ...+++|++|+++++.... . .+ .+..+++|+.|++..+.+
T Consensus 105 ~--~-----~~l~~L~~L~l~~n~i----~~~~~~~~l~~L~~L~l~~n~~~~-~-~~--~~~~l~~L~~L~l~~~~~-- 167 (347)
T 4fmz_A 105 A--L-----QNLTNLRELYLNEDNI----SDISPLANLTKMYSLNLGANHNLS-D-LS--PLSNMTGLNYLTVTESKV-- 167 (347)
T ss_dssp G--G-----TTCTTCSEEECTTSCC----CCCGGGTTCTTCCEEECTTCTTCC-C-CG--GGTTCTTCCEEECCSSCC--
T ss_pred H--H-----cCCCcCCEEECcCCcc----cCchhhccCCceeEEECCCCCCcc-c-cc--chhhCCCCcEEEecCCCc--
Confidence 2 2 5899999999999887 3333 4568999999999987665 2 22 478899999999955565
Q ss_pred CceeecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801 191 PKEKVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT 267 (388)
Q Consensus 191 ~~~~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 267 (388)
....+-+..++|+ .+++ .+..+ ..+..+++|+.|++.+| .++.+++ +..+++|+.|++++| .+..++.
T Consensus 168 -~~~~~~~~l~~L~--~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~ 238 (347)
T 4fmz_A 168 -KDVTPIANLTDLY--SLSLNYNQIEDI---SPLASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP 238 (347)
T ss_dssp -CCCGGGGGCTTCS--EEECTTSCCCCC---GGGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred -CCchhhccCCCCC--EEEccCCccccc---ccccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc
Confidence 3332222222333 4444 44444 33667789999999887 4444433 678889999999876 5555554
Q ss_pred hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801 268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
...+++|++|+++++ .++.+.. ...+++|+.|++.+| .+..++. +..+++|+.|++++|
T Consensus 239 ---~~~l~~L~~L~l~~n-~l~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 239 ---LANLSQLTWLEIGTN-QISDINA-------------VKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNN 297 (347)
T ss_dssp ---GTTCTTCCEEECCSS-CCCCCGG-------------GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSS
T ss_pred ---hhcCCCCCEEECCCC-ccCCChh-------------HhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCC
Confidence 357899999999776 3444321 234689999999997 5666642 367899999999998
Q ss_pred cccccCCCCCcCCCCcceEEEec
Q 036801 348 TNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 348 ~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
.--...+..+..+++|+.+++++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCS
T ss_pred cCCCcChhHhhccccCCEEEccC
Confidence 54334445556789999999983
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1e-19 Score=181.61 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=207.8
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+.+++.+++.++ .+..++... +..+++|++|++.++ .+..+++.. +..+++|++|++++| .+..++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAAL--------LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFN-AIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHH--------HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCCCCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHH--------HccCCCCcEEECCCC-CCCCCChHH--hcCCCCCCEEECCCC-cCCCCC
Confidence 4788999999998 577776642 457899999999985 688887765 778999999999998 577777
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
+..+ ..+++|++|++++|.+ ..+|. +.+++|++|+++++.... .+...+..+++|+.|++..+.+
T Consensus 116 ~~~~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 116 PHVF-----QNVPLLTVLVLERNDL----SSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp TTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECTTSCC
T ss_pred HHHH-----cCCCCCCEEEeeCCCC----CCCCHHHhccCCCCCEEEeeCCcCCC---CChhhhhcCCcCcEEECcCCCC
Confidence 6655 6899999999999987 56665 457899999999986433 4444688899999999966677
Q ss_pred CCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecc
Q 036801 189 WLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLT 267 (388)
Q Consensus 189 ~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 267 (388)
+ .++.+.+++|....+.. .+.++ ...++|+.|++++|. +..++.. ..++|+.|+++++ .+...+
T Consensus 184 ---~-~~~~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~-l~~~~~~--~~~~L~~L~L~~n-~l~~~~- 248 (597)
T 3oja_B 184 ---T-HVDLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNS-INVVRGP--VNVELTILKLQHN-NLTDTA- 248 (597)
T ss_dssp ---S-BCCGGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSC-CCEEECS--CCSCCCEEECCSS-CCCCCG-
T ss_pred ---C-CcChhhhhhhhhhhcccCccccc------cCCchhheeeccCCc-ccccccc--cCCCCCEEECCCC-CCCCCh-
Confidence 3 23444444444333332 33333 245789999998874 4444432 3468999999976 455543
Q ss_pred hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801 268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
....+++|+.|+++++. ++.+.... +..+++|+.|+++++ .+..++... ..+++|+.|++++|
T Consensus 249 --~l~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 249 --WLLNYPGLVEVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN 311 (597)
T ss_dssp --GGGGCTTCSEEECCSSC-CCEEESGG-----------GTTCSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSS
T ss_pred --hhccCCCCCEEECCCCc-cCCCCHHH-----------hcCccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCC
Confidence 34588999999997764 44442211 224789999999996 677887655 67899999999986
Q ss_pred cccccCCCCCcCCCCcceEEEec
Q 036801 348 TNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 348 ~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
.+..+|..+..+++|+.|+++.
T Consensus 312 -~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 312 -HLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCS
T ss_pred -CCCccCcccccCCCCCEEECCC
Confidence 6778888777889999999984
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.9e-19 Score=173.52 Aligned_cols=303 Identities=16% Similarity=0.102 Sum_probs=203.2
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+.+++|++|+++++ .++.+ | .++ .+++|++|++++| .+..++ +..+++|++|++.++ .+..
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~-~-~l~---~l~~L~~L~Ls~n-~l~~~~-----------~~~l~~L~~L~Ls~N-~l~~ 99 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDM-T-GIE---KLTGLTKLICTSN-NITTLD-----------LSQNTNLTYLACDSN-KLTN 99 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCC-T-TGG---GCTTCSEEECCSS-CCSCCC-----------CTTCTTCSEEECCSS-CCSC
T ss_pred hHcCCCCEEEccCC-CcccC-h-hhc---ccCCCCEEEccCC-cCCeEc-----------cccCCCCCEEECcCC-CCce
Confidence 45789999999986 56655 4 577 8999999999998 465542 457899999999975 5776
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~ 162 (388)
++ ++.+++|++|++++| .++.++ + ..+++|++|++++|.+ ..++.+.+++|++|+++.+...
T Consensus 100 ~~-----~~~l~~L~~L~L~~N-~l~~l~---~-----~~l~~L~~L~l~~N~l----~~l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 100 LD-----VTPLTKLTYLNCDTN-KLTKLD---V-----SQNPLLTYLNCARNTL----TEIDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CC-----CTTCTTCCEEECCSS-CCSCCC---C-----TTCTTCCEEECTTSCC----SCCCCTTCTTCCEEECTTCSCC
T ss_pred ee-----cCCCCcCCEEECCCC-cCCeec---C-----CCCCcCCEEECCCCcc----ceeccccCCcCCEEECCCCCcc
Confidence 64 346999999999998 566553 2 5889999999999887 4567778999999999998655
Q ss_pred cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCcccccc
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINL 241 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l 241 (388)
. .. .+..+++|+.|++..+.+ +. ++.+..++|+...+.- .+.++ .+..+++|+.|++++| .++.+
T Consensus 162 ~-~~----~~~~l~~L~~L~ls~n~l---~~-l~l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N-~l~~i 227 (457)
T 3bz5_A 162 T-KL----DVTPQTQLTTLDCSFNKI---TE-LDVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSN-KLTEI 227 (457)
T ss_dssp C-CC----CCTTCTTCCEEECCSSCC---CC-CCCTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSS-CCSCC
T ss_pred c-cc----ccccCCcCCEEECCCCcc---ce-eccccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCC-ccccc
Confidence 4 32 356789999999966777 33 4433333333222222 33333 3567789999999887 45556
Q ss_pred CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccc
Q 036801 242 VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNL 321 (388)
Q Consensus 242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 321 (388)
| +..+++|+.|+++++ .+..++. ..+++|+.|++.. +.++.+....... .... ....+++|+.|++++|
T Consensus 228 p--~~~l~~L~~L~l~~N-~l~~~~~----~~l~~L~~L~l~~-n~L~~L~l~~n~~-~~~~--~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVN-PLTELDV----STLSKLTTLHCIQ-TDLLEIDLTHNTQ-LIYF--QAEGCRKIKELDVTHN 296 (457)
T ss_dssp C--CTTCTTCSEEECCSS-CCSCCCC----TTCTTCCEEECTT-CCCSCCCCTTCTT-CCEE--ECTTCTTCCCCCCTTC
T ss_pred C--ccccCCCCEEEeeCC-cCCCcCH----HHCCCCCEEeccC-CCCCEEECCCCcc-CCcc--cccccccCCEEECCCC
Confidence 4 678889999999865 5665553 2456666665532 2333322111000 0000 0113588999999988
Q ss_pred cccceeccCc------ccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEec
Q 036801 322 ESLRSFYSGY------CALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNM 370 (388)
Q Consensus 322 ~~l~~l~~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 370 (388)
..++.++... .+..+++|+.|+++++ +++.++ +..+++|+.++++.
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence 7666665321 1234567777777763 566664 55778899998873
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2e-18 Score=178.96 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=58.3
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+++++|++|++++|.....+.|..|+ ++++|++|+|++| .+..+.... +..+++|++|++.++ .+.+
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~---~L~~L~~L~Ls~N-~l~~~~p~~--------~~~l~~L~~L~Ls~n-~l~~ 111 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFR---NLPNLRILDLGSS-KIYFLHPDA--------FQGLFHLFELRLYFC-GLSD 111 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTS---SCTTCCEEECTTC-CCCEECTTS--------SCSCSSCCCEECTTC-CCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhc---CCCCCCEEECCCC-cCcccCHhH--------ccCCcccCEeeCcCC-CCCc
Confidence 45666666666666555555555565 5666667766666 344432211 445666666666653 3433
Q ss_pred -ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCc
Q 036801 83 -FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 83 -~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.+... .+..+++|++|++++| .+..... ..+ ..+++|++|++++|.+
T Consensus 112 ~~~~~~-~~~~L~~L~~L~Ls~N-~l~~~~~~~~~-----~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 112 AVLKDG-YFRNLKALTRLDLSKN-QIRSLYLHPSF-----GKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCSTTC-CCSSCSSCCEEEEESC-CCCCCCCCGGG-----GTCSSCCEEEEESSCC
T ss_pred ccccCc-cccccCCCCEEECCCC-cccccccchhH-----hhCCCCCEEECCCCcC
Confidence 12111 1344666666666665 2322211 112 3555566666555443
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.1e-19 Score=164.73 Aligned_cols=225 Identities=17% Similarity=0.180 Sum_probs=136.4
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
.+++++|+++++. ++.+ |..++ .+++|++|++++| .+..++.. +..+++|++|++.++ .+..++
T Consensus 80 ~~~l~~L~L~~n~-l~~l-p~~l~---~l~~L~~L~L~~n-~l~~lp~~---------~~~l~~L~~L~Ls~n-~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQF-PDQAF---RLSHLQHMTIDAA-GLMELPDT---------MQQFAGLETLTLARN-PLRALP 143 (328)
T ss_dssp STTCCEEEEESSC-CSSC-CSCGG---GGTTCSEEEEESS-CCCCCCSC---------GGGGTTCSEEEEESC-CCCCCC
T ss_pred ccceeEEEccCCC-chhc-Chhhh---hCCCCCEEECCCC-CccchhHH---------HhccCCCCEEECCCC-ccccCc
Confidence 4678888888854 5554 66677 7888888888887 45565554 667888888888874 566665
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCC---ccccccCCccEEEEeecCccccccccch--hhccCccEeecccc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTND---LTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFV 159 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~ 159 (388)
.. +..+++|++|++++|..+..+|...... .....+++|++|++++|.+ ..+|. +.+++|++|+++++
T Consensus 144 ~~---l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 144 AS---IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp GG---GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC----CCCCGGGGGCTTCCEEEEESS
T ss_pred HH---HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc----CcchHhhcCCCCCCEEEccCC
Confidence 44 5678888888888886666555543100 0002367777777777765 23333 33556666666665
Q ss_pred ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccc
Q 036801 160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI 239 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~ 239 (388)
.... ++. .+..+++|+.|++..+.+ .+.+| ..+..+++|+.|++++|...+
T Consensus 217 ~l~~---l~~-~l~~l~~L~~L~Ls~n~~---~~~~p----------------------~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 217 PLSA---LGP-AIHHLPKLEELDLRGCTA---LRNYP----------------------PIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CCCC---CCG-GGGGCTTCCEEECTTCTT---CCBCC----------------------CCTTCCCCCCEEECTTCTTCC
T ss_pred CCCc---Cch-hhccCCCCCEEECcCCcc---hhhhH----------------------HHhcCCCCCCEEECCCCCchh
Confidence 4322 333 355566666666622222 12222 344455666666666666666
Q ss_pred ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeec
Q 036801 240 NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIE 283 (388)
Q Consensus 240 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 283 (388)
.+|..+..+++|+.|++++|+.+..+|.. ...+++|+.+++.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVP 309 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCC
Confidence 66655666666666666666555555542 3455666666553
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=7e-18 Score=155.80 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=123.9
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
+++.++++++ .++.++.. ..++|+.|++.++ ++..++... +..+++|++|++++| .++.+.+..
T Consensus 32 ~l~~l~~~~~-~l~~lp~~-----------~~~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD-----------LPPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINN-KISKISPGA 95 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS-----------CCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSS-CCCCBCTTT
T ss_pred CCeEEEecCC-CccccCcc-----------CCCCCeEEECCCC-cCCEeChhh--hccCCCCCEEECCCC-cCCeeCHHH
Confidence 5666666655 34444432 1356666666653 466555543 455666777777666 444443333
Q ss_pred cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCcee
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEK 194 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 194 (388)
+ ..+++|++|++++|.+ ..+|...+++|++|+++++.... .+...+..+++|+.|++..+.+ +..
T Consensus 96 ~-----~~l~~L~~L~Ls~n~l----~~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l---~~~ 160 (330)
T 1xku_A 96 F-----APLVKLERLYLSKNQL----KELPEKMPKTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPL---KSS 160 (330)
T ss_dssp T-----TTCTTCCEEECCSSCC----SBCCSSCCTTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCC---CGG
T ss_pred h-----cCCCCCCEEECCCCcC----CccChhhcccccEEECCCCcccc---cCHhHhcCCccccEEECCCCcC---Ccc
Confidence 3 4566677777766655 45555555667777766654322 3334566667777776644444 110
Q ss_pred -ecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhc
Q 036801 195 -VENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT 273 (388)
Q Consensus 195 -~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 273 (388)
.. + ..+..+++|+.|++++| .++.+|... +++|+.|+++++ .+..+... ....
T Consensus 161 ~~~--------------------~-~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n-~l~~~~~~-~~~~ 214 (330)
T 1xku_A 161 GIE--------------------N-GAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGN-KITKVDAA-SLKG 214 (330)
T ss_dssp GBC--------------------T-TGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTS-CCCEECTG-GGTT
T ss_pred CcC--------------------h-hhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCC-cCCccCHH-HhcC
Confidence 00 0 23334555666666554 233343322 245566666543 34444322 2234
Q ss_pred cCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801 274 LVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF 353 (388)
Q Consensus 274 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 353 (388)
+++|++|+++++. ++.+.... ...+++|++|+++++ .+..++... ..+++|++|+++++ .++.+
T Consensus 215 l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N-~i~~~ 278 (330)
T 1xku_A 215 LNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAI 278 (330)
T ss_dssp CTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCC
T ss_pred CCCCCEEECCCCc-CceeChhh-----------ccCCCCCCEEECCCC-cCccCChhh--ccCCCcCEEECCCC-cCCcc
Confidence 5556666664432 22221100 112455566666554 344554433 44556666666553 34444
Q ss_pred C
Q 036801 354 S 354 (388)
Q Consensus 354 ~ 354 (388)
+
T Consensus 279 ~ 279 (330)
T 1xku_A 279 G 279 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=7e-18 Score=174.85 Aligned_cols=317 Identities=14% Similarity=0.078 Sum_probs=211.0
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
.+++++|++++| .++.+.|..++ ++++|++|++++|.....++... +..+++|++|+++++ .+....
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~---~l~~L~~LdLs~n~~~~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFP---FLEQLQLLELGSQYTPLTIDKEA--------FRNLPNLRILDLGSS-KIYFLH 89 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCS---SCCSCSEEEECTTCCCCEECTTT--------TSSCTTCCEEECTTC-CCCEEC
T ss_pred CCCcCEEECCCC-cCCccChhHCc---ccccCeEEeCCCCCCccccCHHH--------hcCCCCCCEEECCCC-cCcccC
Confidence 368999999985 57777788888 89999999999996666653332 678999999999985 688776
Q ss_pred CCCcccccCCCccEEEeecCCCceE-eccc-ccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMV-KFKR-TTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~-~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~ 162 (388)
+.. +..+++|++|++++| .+.. .+.. .+ ..+++|++|++++|.+......-..+.+++|++|+++++...
T Consensus 90 p~~--~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 90 PDA--FQGLFHLFELRLYFC-GLSDAVLKDGYF-----RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TTS--SCSCSSCCCEECTTC-CCSSCCSTTCCC-----SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HhH--ccCCcccCEeeCcCC-CCCcccccCccc-----cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 665 778999999999998 4443 3332 23 689999999999988731110112356899999999987543
Q ss_pred cccccchhHhhcC--CCccEEEEEeccCCCCceeecCcc------ccc--cceeeeee-ccce-----e-----------
Q 036801 163 TTILSLDDFLQRF--HTLKVLQIEGYNYWLPKEKVENGV------EVI--IREAYNCY-DMKY-----I----------- 215 (388)
Q Consensus 163 ~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~~------~~~--L~~~~l~l-~l~~-----i----------- 215 (388)
. ..+ ..+..+ ++|+.|++..+.+ ....+..+ +.+ |+..++.- .+.. +
T Consensus 162 ~--~~~-~~l~~l~~~~L~~L~L~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 162 L--VCE-HELEPLQGKTLSFFSLAANSL---YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp C--CCS-GGGHHHHHCSSCCCEECCSBS---CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred e--eCH-HHcccccCCccceEECCCCcc---ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 2 222 244445 8999999955565 33333211 111 22211111 1100 0
Q ss_pred --------------------ccccCCCC--CCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhc
Q 036801 216 --------------------LKHESSSI--MDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT 273 (388)
Q Consensus 216 --------------------~~~~~l~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 273 (388)
.. ..+.. .++|+.|++++|......+..+..+++|+.|+++++ .+..++.. ....
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~-~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~ 312 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQ-NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADE-AFYG 312 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGG-TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTT-TTTT
T ss_pred eecccccccccccccccCCCCh-hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChH-HhcC
Confidence 00 11111 268999999887544444556788899999999875 56666443 3457
Q ss_pred cCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801 274 LVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF 353 (388)
Q Consensus 274 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 353 (388)
+++|++|+++++. ++.+.... ...+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.+
T Consensus 313 l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i 377 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-ALTTI 377 (844)
T ss_dssp CSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-CSCCC
T ss_pred CCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-CCCcc
Confidence 8899999997663 44332211 234689999999987 567666543 367899999999985 55555
Q ss_pred CCCCcCCCCcceEEEec
Q 036801 354 SRGELSTPMLHKVQLNM 370 (388)
Q Consensus 354 ~~~~~~~~~L~~l~l~~ 370 (388)
+. +++|+.+.+..
T Consensus 378 ~~----~~~L~~L~l~~ 390 (844)
T 3j0a_A 378 HF----IPSIPDIFLSG 390 (844)
T ss_dssp SS----CCSCSEEEEES
T ss_pred cC----CCCcchhccCC
Confidence 44 57788887773
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=7.4e-18 Score=168.98 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=96.5
Q ss_pred CCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801 220 SSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD 299 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 299 (388)
.+..+++++.++++.+......+.....+++|+.|+++++......... ....+++|++|+++++ .++.+....
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~~~---- 513 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSPTA---- 513 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECTTT----
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcChHH----
Confidence 3445566666666665433333344567788888888876544443332 3456788999999776 455553221
Q ss_pred ccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCC-CCCcCC-CCcceEEEeccCCcccc
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFS-RGELST-PMLHKVQLNMWDEACWA 377 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~-~~L~~l~l~~~~~~~~~ 377 (388)
+..+++|+.|+++++ ++..++... +..+++|+.|+++++ ++..++ ..+..+ ++|+.|++. ++.|.
T Consensus 514 -------f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~---~Np~~ 580 (635)
T 4g8a_A 514 -------FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT---QNDFA 580 (635)
T ss_dssp -------TTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECT---TCCBC
T ss_pred -------HcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEee---CCCCc
Confidence 224689999999986 677776543 367899999999985 566554 445455 689999999 88888
Q ss_pred cccCc
Q 036801 378 WKEGL 382 (388)
Q Consensus 378 ~~~~~ 382 (388)
|+.++
T Consensus 581 C~C~~ 585 (635)
T 4g8a_A 581 CTCEH 585 (635)
T ss_dssp CSGGG
T ss_pred ccCCc
Confidence 77654
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2.7e-18 Score=158.78 Aligned_cols=283 Identities=11% Similarity=0.109 Sum_probs=164.5
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
+++.++++++ .++.+|.. ..++|++|++.++ .+..+++.. +..+++|++|++++| .++.+.+..
T Consensus 34 ~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE-----------ISPDTTLLDLQNN-DISELRKDD--FKGLQHLYALVLVNN-KISKIHEKA 97 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC-----------CCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCEECGGG
T ss_pred cCCEEECCCC-CccccCCC-----------CCCCCeEEECCCC-cCCccCHhH--hhCCCCCcEEECCCC-ccCccCHhH
Confidence 6888888877 46665543 2467888888874 577776654 667888888888887 566664444
Q ss_pred cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCce-
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKE- 193 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~- 193 (388)
+ ..+++|++|++++|.+ ..+|....++|++|+++++.... ++...+..+++|+.|++..+.+ +.
T Consensus 98 ~-----~~l~~L~~L~L~~n~l----~~l~~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l---~~~ 162 (332)
T 2ft3_A 98 F-----SPLRKLQKLYISKNHL----VEIPPNLPSSLVELRIHDNRIRK---VPKGVFSGLRNMNCIEMGGNPL---ENS 162 (332)
T ss_dssp S-----TTCTTCCEEECCSSCC----CSCCSSCCTTCCEEECCSSCCCC---CCSGGGSSCSSCCEEECCSCCC---BGG
T ss_pred h-----hCcCCCCEEECCCCcC----CccCccccccCCEEECCCCccCc---cCHhHhCCCccCCEEECCCCcc---ccC
Confidence 4 5788888888888876 56666666888888888875433 4444677888888888855555 21
Q ss_pred eecCccccccceeeeee---ccceeccccCCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchh
Q 036801 194 KVENGVEVIIREAYNCY---DMKYILKHESSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFL 269 (388)
Q Consensus 194 ~~~~~~~~~L~~~~l~l---~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~ 269 (388)
......+..+.-..+.+ .+..++. .+ .++|++|+++++. ++.++ ..+..+++|+.|+++++ .+..++...
T Consensus 163 ~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~--~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~ 236 (332)
T 2ft3_A 163 GFEPGAFDGLKLNYLRISEAKLTGIPK--DL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGS 236 (332)
T ss_dssp GSCTTSSCSCCCSCCBCCSSBCSSCCS--SS--CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTG
T ss_pred CCCcccccCCccCEEECcCCCCCccCc--cc--cCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhH
Confidence 11111111110012222 3333332 11 1567777776663 33332 44566677777777654 455444332
Q ss_pred hhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCccc-----ccCCCcceEec
Q 036801 270 IAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCA-----LNFPSLERLLV 344 (388)
Q Consensus 270 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~~~~~L~~L~l 344 (388)
...+++|++|+++++ .++.+... ...+++|+.|++.++ .+..++...+. ...+.|+.|++
T Consensus 237 -~~~l~~L~~L~L~~N-~l~~lp~~------------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 237 -LSFLPTLRELHLDNN-KLSRVPAG------------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp -GGGCTTCCEEECCSS-CCCBCCTT------------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred -hhCCCCCCEEECCCC-cCeecChh------------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 345677777777554 34433221 123567777777764 35555433211 11456677777
Q ss_pred cCCccc--ccCCCCCcCCCCcceEEEe
Q 036801 345 DDCTNM--EIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 345 ~~c~~l--~~l~~~~~~~~~L~~l~l~ 369 (388)
.+++.. ...|..+..++.|+.++++
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ecCcccccccCcccccccchhhhhhcc
Confidence 766532 2223334455667776665
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=4.4e-18 Score=157.02 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=162.6
Q ss_pred CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeeccccccccccccchh
Q 036801 93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTILSLDD 170 (388)
Q Consensus 93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~~~ 170 (388)
.++++.|+++++ .+..+|... ..+++|++|++++|.+ ..+|. +.+++|++|+++++.... +|.
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l------~~l~~L~~L~L~~n~l----~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~- 144 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQA------FRLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLRA---LPA- 144 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCG------GGGTTCSEEEEESSCC----CCCCSCGGGGTTCSEEEEESCCCCC---CCG-
T ss_pred ccceeEEEccCC-CchhcChhh------hhCCCCCEEECCCCCc----cchhHHHhccCCCCEEECCCCcccc---CcH-
Confidence 466777777766 455555544 3567777777777665 34443 446777777777764322 444
Q ss_pred HhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCC
Q 036801 171 FLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQ 249 (388)
Q Consensus 171 ~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 249 (388)
.+..+++|+.|++ +|+.. ..+|..+...- .. ..+..+++|+.|++++| .++.+|..+..++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~----~~~p~~~~~~~------------~~-~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~ 206 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPEL----TELPEPLASTD------------AS-GEHQGLVNLQSLRLEWT-GIRSLPASIANLQ 206 (328)
T ss_dssp GGGGCTTCCEEEEEEETTC----CCCCSCSEEEC-------------C-CCEEESTTCCEEEEEEE-CCCCCCGGGGGCT
T ss_pred HHhcCcCCCEEECCCCCCc----cccChhHhhcc------------ch-hhhccCCCCCEEECcCC-CcCcchHhhcCCC
Confidence 5778889999999 55544 44443221000 00 33445789999999987 5667887888899
Q ss_pred CcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceecc
Q 036801 250 NLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYS 329 (388)
Q Consensus 250 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 329 (388)
+|++|+++++ .+..++.. +..+++|++|++++|.....+... ...+++|+.|++.+|.....++.
T Consensus 207 ~L~~L~L~~N-~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 207 NLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp TCCEEEEESS-CCCCCCGG--GGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCEEEccCC-CCCcCchh--hccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECCCCCchhhcch
Confidence 9999999975 56666553 457899999999888766554322 22478999999999988888887
Q ss_pred CcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 330 GYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 330 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
.. ..+++|++|++++|+.++.+|..+..+++|+.+.+.
T Consensus 272 ~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 272 DI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 65 789999999999999999999999999999999887
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.2e-17 Score=154.13 Aligned_cols=285 Identities=14% Similarity=0.115 Sum_probs=195.1
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+++.++++++ .++.+ |..+ .++|++|++++| .+..++... +..+++|++|++.++ .+..+.+.
T Consensus 32 ~l~~l~~~~~-~l~~l-p~~~-----~~~l~~L~L~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKV-PKDL-----PPDTALLDLQNN-KITEIKDGD--------FKNLKNLHTLILINN-KISKISPG 94 (330)
T ss_dssp ETTEEECTTS-CCCSC-CCSC-----CTTCCEEECCSS-CCCCBCTTT--------TTTCTTCCEEECCSS-CCCCBCTT
T ss_pred CCeEEEecCC-Ccccc-CccC-----CCCCeEEECCCC-cCCEeChhh--------hccCCCCCEEECCCC-cCCeeCHH
Confidence 7888888875 45554 4432 457999999998 576665532 668999999999975 68777665
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELT 163 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~ 163 (388)
. +..+++|++|+++++ .++.++... .++|++|++++|.+ ..++. ..+++|+.|+++++....
T Consensus 95 ~--~~~l~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 95 A--FAPLVKLERLYLSKN-QLKELPEKM--------PKTLQELRVHENEI----TKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp T--TTTCTTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSSCC----CBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred H--hcCCCCCCEEECCCC-cCCccChhh--------cccccEEECCCCcc----cccCHhHhcCCccccEEECCCCcCCc
Confidence 4 678999999999988 566565433 37899999999887 44443 458899999999876533
Q ss_pred ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccccc-C
Q 036801 164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL-V 242 (388)
Q Consensus 164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l-~ 242 (388)
.......+..+++|+.|++..+.+ + .++ ..+ .++|+.|++++|. ++.+ +
T Consensus 160 -~~~~~~~~~~l~~L~~L~l~~n~l---~-~l~----------------------~~~--~~~L~~L~l~~n~-l~~~~~ 209 (330)
T 1xku_A 160 -SGIENGAFQGMKKLSYIRIADTNI---T-TIP----------------------QGL--PPSLTELHLDGNK-ITKVDA 209 (330)
T ss_dssp -GGBCTTGGGGCTTCCEEECCSSCC---C-SCC----------------------SSC--CTTCSEEECTTSC-CCEECT
T ss_pred -cCcChhhccCCCCcCEEECCCCcc---c-cCC----------------------ccc--cccCCEEECCCCc-CCccCH
Confidence 223334678899999999966666 2 233 121 2788889988875 4433 4
Q ss_pred CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801 243 PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE 322 (388)
Q Consensus 243 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 322 (388)
..+..+++|+.|+++++ .+..++.. ....+++|++|+++++ .++.+... ...+++|+.|++.++
T Consensus 210 ~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~------------l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN-KLVKVPGG------------LADHKYIQVVYLHNN- 273 (330)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS-CCSSCCTT------------TTTCSSCCEEECCSS-
T ss_pred HHhcCCCCCCEEECCCC-cCceeChh-hccCCCCCCEEECCCC-cCccCChh------------hccCCCcCEEECCCC-
Confidence 55678888999998865 56666543 2356788999999766 35444322 123688888888886
Q ss_pred ccceeccCccc-----ccCCCcceEeccCCccc-ccC-CCCCcCCCCcceEEEe
Q 036801 323 SLRSFYSGYCA-----LNFPSLERLLVDDCTNM-EIF-SRGELSTPMLHKVQLN 369 (388)
Q Consensus 323 ~l~~l~~~~~~-----~~~~~L~~L~l~~c~~l-~~l-~~~~~~~~~L~~l~l~ 369 (388)
.+..++...+. ...+.++.|++.+.+-. ..+ |.....++.++.++++
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 46666544311 12477888999886632 123 3444456888888876
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1e-17 Score=162.09 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=124.8
Q ss_pred cccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccc
Q 036801 121 KVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVE 200 (388)
Q Consensus 121 ~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 200 (388)
..+++|++|++++|.+. ...+.+.+++|+.|+++++.... .+ .+..+++|+.|++..+.+ ....+....
T Consensus 196 ~~l~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l---~~~~~~~~l 264 (466)
T 1o6v_A 196 AKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD---IG--TLASLTNLTDLDLANNQI---SNLAPLSGL 264 (466)
T ss_dssp GGCTTCSEEECCSSCCC---CCGGGGGCTTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCC---CCCGGGTTC
T ss_pred ccCCCCCEEEecCCccc---ccccccccCCCCEEECCCCCccc---ch--hhhcCCCCCEEECCCCcc---ccchhhhcC
Confidence 35566666666665542 12234556777777777664322 21 456677888888855555 333332222
Q ss_pred cccceeeeee-ccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCE
Q 036801 201 VIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLRE 279 (388)
Q Consensus 201 ~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 279 (388)
++|+...+.- .+..++ .+..+++|+.|++++|. ++.+++ +..+++|+.|++++| .+.+.+. ...+++|++
T Consensus 265 ~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~ 335 (466)
T 1o6v_A 265 TKLTELKLGANQISNIS---PLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQR 335 (466)
T ss_dssp TTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCE
T ss_pred CCCCEEECCCCccCccc---cccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCE
Confidence 3333222222 444443 36678999999999984 555544 678999999999987 5655544 357899999
Q ss_pred EeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCC
Q 036801 280 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSR 355 (388)
Q Consensus 280 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 355 (388)
|++.+| .++.+.. ...+++|+.|++.+|. +..+.. . ..+++|+.|++++|+ +..+|.
T Consensus 336 L~l~~n-~l~~~~~-------------l~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 336 LFFYNN-KVSDVSS-------------LANLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp EECCSS-CCCCCGG-------------GTTCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE-EECCCB
T ss_pred eECCCC-ccCCchh-------------hccCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc-ccCCch
Confidence 999877 4544421 2347899999999985 454443 3 578999999999864 444443
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=4.6e-18 Score=157.21 Aligned_cols=292 Identities=14% Similarity=0.074 Sum_probs=192.5
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+++.++++++ .++.+ |..+ .++|++|++++| .+..++... +..+++|++|++.++ .+..+.+.
T Consensus 34 ~l~~l~~~~~-~l~~i-p~~~-----~~~l~~L~l~~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAV-PKEI-----SPDTTLLDLQNN-DISELRKDD--------FKGLQHLYALVLVNN-KISKIHEK 96 (332)
T ss_dssp ETTEEECCSS-CCSSC-CSCC-----CTTCCEEECCSS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCEECGG
T ss_pred cCCEEECCCC-Ccccc-CCCC-----CCCCeEEECCCC-cCCccCHhH--------hhCCCCCcEEECCCC-ccCccCHh
Confidence 6888888875 45554 4432 356888999888 466654432 567888999999875 57776555
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELT 163 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~ 163 (388)
. +..+++|++|+++++ .+..++... .++|++|++++|.+ ..++. ..+++|++|+++++....
T Consensus 97 ~--~~~l~~L~~L~L~~n-~l~~l~~~~--------~~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 97 A--FSPLRKLQKLYISKN-HLVEIPPNL--------PSSLVELRIHDNRI----RKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp G--STTCTTCCEEECCSS-CCCSCCSSC--------CTTCCEEECCSSCC----CCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred H--hhCcCCCCEEECCCC-cCCccCccc--------cccCCEEECCCCcc----CccCHhHhCCCccCCEEECCCCcccc
Confidence 4 667889999999887 555555432 27889999988877 44443 347788999988875432
Q ss_pred ccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccccC
Q 036801 164 TILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLINLV 242 (388)
Q Consensus 164 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~ 242 (388)
.......+..+ +|+.|++..+.+ ..+|.....+|+...+.- .+..+.+ ..+..+++|+.|++++| .++.++
T Consensus 162 -~~~~~~~~~~l-~L~~L~l~~n~l----~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~ 233 (332)
T 2ft3_A 162 -SGFEPGAFDGL-KLNYLRISEAKL----TGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHN-QIRMIE 233 (332)
T ss_dssp -GGSCTTSSCSC-CCSCCBCCSSBC----SSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSS-CCCCCC
T ss_pred -CCCCcccccCC-ccCEEECcCCCC----CccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCC-cCCcCC
Confidence 12223345555 888888866666 335655555555444444 5666665 67888999999999998 455554
Q ss_pred C-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccc
Q 036801 243 P-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNL 321 (388)
Q Consensus 243 ~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 321 (388)
+ .+..+++|+.|+++++ .+..++.. ...+++|+.|+++++ .++.+......... ....+++|+.|++.++
T Consensus 234 ~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVG-----FGVKRAYYNGISLFNN 304 (332)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSS-----CCSSSCCBSEEECCSS
T ss_pred hhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhHccccc-----cccccccccceEeecC
Confidence 4 5788999999999975 67777663 457899999999765 46555322111000 0112578999999997
Q ss_pred cccc-eeccCcccccCCCcceEeccCCc
Q 036801 322 ESLR-SFYSGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 322 ~~l~-~l~~~~~~~~~~~L~~L~l~~c~ 348 (388)
+... .+... .+..+++|+.++++++.
T Consensus 305 ~~~~~~~~~~-~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPA-TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred cccccccCcc-cccccchhhhhhccccc
Confidence 6321 23322 23568999999998764
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=5.7e-17 Score=159.04 Aligned_cols=126 Identities=20% Similarity=0.139 Sum_probs=97.5
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|++++|. ++.++|..+. ++++|++|++++| .+..+.... +..+++|++|+++++ ++..++.
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDIL---SLSKLRILIISHN-RIQYLDISV--------FKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHT---TCTTCCEEECCSS-CCCEEEGGG--------GTTCTTCCEEECCSS-CCCEEEC
T ss_pred ccccEEECCCCc-ccccChhhcc---ccccccEEecCCC-ccCCcChHH--------hhcccCCCEEecCCC-ceeecCc
Confidence 689999999864 6666667788 8999999999999 566664331 678999999999974 6777665
Q ss_pred CCcccccCCCccEEEeecCCCceEe--cccccCCccccccCCccEEEEeecCccccccccchhhccCc--cEeecccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVK--FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL--KCLDVEFVDE 161 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L--~~L~l~~~~~ 161 (388)
. .+++|++|++++| .++.+ |... ..+++|++|++++|.+ .......+++| +.|+++++..
T Consensus 87 ~-----~l~~L~~L~L~~N-~l~~~~~p~~~------~~l~~L~~L~L~~n~l----~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 87 H-----PTVNLKHLDLSFN-AFDALPICKEF------GNMSQLKFLGLSTTHL----EKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp C-----CCCCCSEEECCSS-CCSSCCCCGGG------GGCTTCCEEEEEESSC----CGGGGGGGTTSCEEEEEEEECTT
T ss_pred c-----ccCCccEEeccCC-ccccccchhhh------ccCCcceEEEecCccc----chhhccccccceeeEEEeecccc
Confidence 4 5899999999998 45442 3333 5899999999999887 33445567788 9999998764
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=9.7e-17 Score=158.94 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|++++| .++.++|..++ ++++|++|++++| .+..++... +..+++|++|+++++ .+..++.
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDIS---FLSELRVLRLSHN-RIRSLDFHV--------FLFNQDLEYLDVSHN-RLQNISC 117 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTT---TCTTCCEEECCSC-CCCEECTTT--------TTTCTTCCEEECTTS-CCCEECS
T ss_pred CCcCEEECCCC-CccccChhhhc---cCCCccEEECCCC-CCCcCCHHH--------hCCCCCCCEEECCCC-cCCccCc
Confidence 56777777774 35555555666 6777777777777 455553321 456777777777764 5666554
Q ss_pred CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCc--cEeecccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL--KCLDVEFVDE 161 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L--~~L~l~~~~~ 161 (388)
. .+++|++|++++| .+..++. ..+ ..+++|++|++++|.+ .......+++| +.|+++++..
T Consensus 118 ~-----~l~~L~~L~Ls~N-~l~~l~~p~~~-----~~l~~L~~L~L~~n~l----~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 118 C-----PMASLRHLDLSFN-DFDVLPVCKEF-----GNLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp C-----CCTTCSEEECCSS-CCSBCCCCGGG-----GGCTTCCEEEEECSBC----CTTTTGGGTTSCEEEEEEEESSC
T ss_pred c-----ccccCCEEECCCC-CccccCchHhh-----cccCcccEEecCCCcc----ccCchhhhhhceeeEEEeecccc
Confidence 4 4777788877777 4544432 222 4677788888877765 22334445555 7777777643
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=155.92 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=177.4
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.++.....+.+++ .++.+|.. ..++|++|++.++ .+..++... +..+++|++|++++| .++.++
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~~-----------~~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 92 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPSG-----------LTEAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSN-GINTIE 92 (353)
T ss_dssp EECTTSEEECCST-TCSSCCTT-----------CCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEEC
T ss_pred CCCCCeEeeCCCC-Cccccccc-----------ccccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCC-ccCccC
Confidence 3555555566554 45555543 2357888888764 577776654 567888888888877 666665
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccch-hHhhcCCCccEEEE-Eec
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQI-EGY 186 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l-~~~ 186 (388)
...+ ..+++|++|++++|.+ ..++. ..+++|++|+++++.... ++. ..+..+++|+.|++ +++
T Consensus 93 ~~~~-----~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 93 EDSF-----SSLGSLEHLDLSYNYL----SNLSSSWFKPLSSLTFLNLLGNPYKT---LGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TTTT-----TTCTTCCEEECCSSCC----SSCCHHHHTTCTTCSEEECTTCCCSS---SCSSCSCTTCTTCCEEEEEESS
T ss_pred Hhhc-----CCCCCCCEEECCCCcC----CcCCHhHhCCCccCCEEECCCCCCcc---cCchhhhccCCCCcEEECCCCc
Confidence 5544 5778888888888776 44554 346788888888765332 333 35677889999999 443
Q ss_pred cCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801 187 NYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL 266 (388)
Q Consensus 187 ~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 266 (388)
.+ +...+ ..+..+++|++|++++|......+..+..+++|++|+++++ .+..++
T Consensus 161 ~~---~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~ 214 (353)
T 2z80_A 161 TF---TKIQR----------------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLL 214 (353)
T ss_dssp SC---CEECT----------------------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHH
T ss_pred cc---cccCH----------------------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccch
Confidence 45 22211 45667788999999888544444666778888999999865 455554
Q ss_pred chhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc----ccceeccCcccccCCCcceE
Q 036801 267 TFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE----SLRSFYSGYCALNFPSLERL 342 (388)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~l~~~~~~~~~~~L~~L 342 (388)
.. +...+++|++|+++++. ++.+....... ....+.++.+++.++. .+..++... ..+++|++|
T Consensus 215 ~~-~~~~~~~L~~L~L~~n~-l~~~~~~~l~~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L 282 (353)
T 2z80_A 215 EI-FVDVTSSVECLELRDTD-LDTFHFSELST--------GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLEL 282 (353)
T ss_dssp HH-HHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEE
T ss_pred hh-hhhhcccccEEECCCCc-ccccccccccc--------ccccchhhccccccccccCcchhhhHHHH--hcccCCCEE
Confidence 43 33457889999997653 43332111000 1123445555555542 123344433 578999999
Q ss_pred eccCCcccccCCCCC-cCCCCcceEEEeccCCccccc
Q 036801 343 LVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 343 ~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~ 378 (388)
++++| .++.+|.+. ..+++|+.++++ ++.|.+
T Consensus 283 ~Ls~N-~l~~i~~~~~~~l~~L~~L~L~---~N~~~~ 315 (353)
T 2z80_A 283 EFSRN-QLKSVPDGIFDRLTSLQKIWLH---TNPWDC 315 (353)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECC---SSCBCC
T ss_pred ECCCC-CCCccCHHHHhcCCCCCEEEee---CCCccC
Confidence 99985 677888875 678999999998 554443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.2e-17 Score=153.12 Aligned_cols=252 Identities=12% Similarity=0.052 Sum_probs=129.7
Q ss_pred cccceeecccccccc---EeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCce-E
Q 036801 34 VRLQYIEIEKCHVLE---ELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFM-V 109 (388)
Q Consensus 34 ~~L~~L~L~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~ 109 (388)
.++++|+++++. +. .++.. +..+++|++|++.+++++....+.. +..+++|++|++++| .+. .
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~---------l~~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n-~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS---------LANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHT-NVSGA 116 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG---------GGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEE-CCEEE
T ss_pred ceEEEEECCCCC-ccCCcccChh---------HhCCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCC-eeCCc
Confidence 356666666652 32 23332 4556666666665433444333332 455666666666665 333 3
Q ss_pred ecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeeccccccccccccchhHhhcCC-CccEEEEEec
Q 036801 110 KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFH-TLKVLQIEGY 186 (388)
Q Consensus 110 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 186 (388)
++... ..+++|++|++++|.+. ..+| ...+++|++|+++++.... ..|. .+..++ +|+.|++..+
T Consensus 117 ~p~~~------~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~-~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 117 IPDFL------SQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISG--AIPD-SYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCGGG------GGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCEE--ECCG-GGGCCCTTCCEEECCSS
T ss_pred CCHHH------hCCCCCCEEeCCCCccC---CcCChHHhcCCCCCeEECcCCcccC--cCCH-HHhhhhhcCcEEECcCC
Confidence 33322 45666666666665542 1222 2345666666666654321 2333 344555 6777777544
Q ss_pred cCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeec
Q 036801 187 NYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVL 266 (388)
Q Consensus 187 ~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 266 (388)
.+ +..++ ..+..++ |+.|++++|......+..+..+++|+.|+++++ .+....
T Consensus 185 ~l---~~~~~----------------------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 237 (313)
T 1ogq_A 185 RL---TGKIP----------------------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDL 237 (313)
T ss_dssp EE---EEECC----------------------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBG
T ss_pred ee---eccCC----------------------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeec
Confidence 54 33333 2233333 666666666433344445566666777766654 233222
Q ss_pred chhhhhccCccCEEeeccccccc-cccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEecc
Q 036801 267 TFLIAKTLVRLREMKIESCAMIT-EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVD 345 (388)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 345 (388)
.. ...+++|++|+++++. ++ .+... ...+++|+.|+++++.--..++.. ..+++|+.+++.
T Consensus 238 ~~--~~~l~~L~~L~Ls~N~-l~~~~p~~------------l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~ 299 (313)
T 1ogq_A 238 GK--VGLSKNLNGLDLRNNR-IYGTLPQG------------LTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYA 299 (313)
T ss_dssp GG--CCCCTTCCEEECCSSC-CEECCCGG------------GGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTC
T ss_pred Cc--ccccCCCCEEECcCCc-ccCcCChH------------HhcCcCCCEEECcCCcccccCCCC---ccccccChHHhc
Confidence 21 2345667777775543 22 11110 223566777777766433344442 356777777777
Q ss_pred CCcccccCCC
Q 036801 346 DCTNMEIFSR 355 (388)
Q Consensus 346 ~c~~l~~l~~ 355 (388)
+++.+...|.
T Consensus 300 ~N~~lc~~p~ 309 (313)
T 1ogq_A 300 NNKCLCGSPL 309 (313)
T ss_dssp SSSEEESTTS
T ss_pred CCCCccCCCC
Confidence 7666655443
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.2e-17 Score=159.24 Aligned_cols=225 Identities=17% Similarity=0.177 Sum_probs=126.1
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
++++|+++++ .++.+.|..|+ ++++|++|++++| .+..++... +..+++|++|++.++ .+..++..
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~ 141 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFR---HLHHLEVLQLGRN-SIRQIEVGA--------FNGLASLNTLELFDN-WLTVIPSG 141 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT--------TTTCTTCCEEECCSS-CCSBCCTT
T ss_pred CccEEECcCC-cCceECHHHcC---CCCCCCEEECCCC-ccCCcChhh--------ccCcccCCEEECCCC-cCCccChh
Confidence 5666666664 35555555555 5666666666666 444443321 445666666666653 45555554
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL 166 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~ 166 (388)
. +..+++|++|++++| .++.++...+ ..+++|++|++++++....+..-....+++|+.|+++++....
T Consensus 142 ~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 142 A--FEYLSKLRELWLRNN-PIESIPSYAF-----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp T--SSSCTTCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred h--hcccCCCCEEECCCC-CcceeCHhHH-----hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 3 445666666666666 4555555444 4666666666666443322111112335566666666654322
Q ss_pred cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801 167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST 246 (388)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 246 (388)
++ .+..+++|+.|++..|.+ +. +.+ ..+..+++|+.|++.+|......+..+.
T Consensus 211 ~~--~~~~l~~L~~L~Ls~N~l---~~---------------------~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 211 MP--NLTPLVGLEELEMSGNHF---PE---------------------IRP-GSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp CC--CCTTCTTCCEEECTTSCC---SE---------------------ECG-GGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cc--cccccccccEEECcCCcC---cc---------------------cCc-ccccCccCCCEEEeCCCcCceECHHHhc
Confidence 22 244566666666644455 22 222 4555667777777777643333344556
Q ss_pred CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
.+++|+.|+++++ .+..++.. ....+++|+.|++.++
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCC
Confidence 6777777777754 55555543 2345677777777653
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=157.25 Aligned_cols=225 Identities=16% Similarity=0.175 Sum_probs=126.4
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++++.|+++++ .++.+.+..+. ++++|++|+|++| .+..++... +..+++|++|++.++ ++..++.
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~ 129 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFK---HLRHLEILQLSRN-HIRTIEIGA--------FNGLANLNTLELFDN-RLTTIPN 129 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTS---SCSSCCEEECCSS-CCCEECGGG--------GTTCSSCCEEECCSS-CCSSCCT
T ss_pred CCCcEEEccCC-cCCeeCHHHhh---CCCCCCEEECCCC-cCCccChhh--------ccCCccCCEEECCCC-cCCeeCH
Confidence 35666666663 35555555555 5666677776666 344443321 445666666666653 5665555
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
.. +..+++|++|+++++ .+..++...+ ..+++|++|++++++....+..-....+++|++|+++++....
T Consensus 130 ~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 130 GA--FVYLSKLKELWLRNN-PIESIPSYAF-----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp TT--SCSCSSCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred hH--hhccccCceeeCCCC-cccccCHHHh-----hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 43 455666666666666 4555555444 4666666666666443322111122335666666666654322
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
++ .+..+++|+.|++..|.+ +. +.+ ..+..+++|+.|++.++......+..+
T Consensus 200 -~~--~~~~l~~L~~L~Ls~N~l---~~---------------------~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 200 -IP--NLTPLIKLDELDLSGNHL---SA---------------------IRP-GSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp -CC--CCTTCSSCCEEECTTSCC---CE---------------------ECT-TTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred -cc--ccCCCcccCEEECCCCcc---Cc---------------------cCh-hhhccCccCCEEECCCCceeEEChhhh
Confidence 22 245566666666644455 22 222 555666777777777763322223345
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIES 284 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 284 (388)
..+++|+.|+++++ .+..++.. ....+++|+.|++.+
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHH 288 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCS
T ss_pred cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCC
Confidence 66777777777754 55555543 234567777777765
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=2.8e-17 Score=158.43 Aligned_cols=284 Identities=16% Similarity=0.132 Sum_probs=180.9
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
++.+++|++|++++|. ++.+ | ++ .+++|++|++++| .+..++ +..+++|++|++.++ .+.
T Consensus 60 l~~l~~L~~L~Ls~n~-l~~~-~--~~---~l~~L~~L~Ls~N-~l~~~~-----------~~~l~~L~~L~L~~N-~l~ 119 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNN-ITTL-D--LS---QNTNLTYLACDSN-KLTNLD-----------VTPLTKLTYLNCDTN-KLT 119 (457)
T ss_dssp GGGCTTCSEEECCSSC-CSCC-C--CT---TCTTCSEEECCSS-CCSCCC-----------CTTCTTCCEEECCSS-CCS
T ss_pred hcccCCCCEEEccCCc-CCeE-c--cc---cCCCCCEEECcCC-CCceee-----------cCCCCcCCEEECCCC-cCC
Confidence 3568899999999864 6654 3 66 7999999999998 455531 457888999999875 566
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDE 161 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~ 161 (388)
.++ +..+++|++|++++| .++.++ . ..+++|++|++++|... ..++.+.+++|+.|+++++..
T Consensus 120 ~l~-----~~~l~~L~~L~l~~N-~l~~l~--l------~~l~~L~~L~l~~n~~~---~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 120 KLD-----VSQNPLLTYLNCARN-TLTEID--V------SHNTQLTELDCHLNKKI---TKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CCC-----CTTCTTCCEEECTTS-CCSCCC--C------TTCTTCCEEECTTCSCC---CCCCCTTCTTCCEEECCSSCC
T ss_pred eec-----CCCCCcCCEEECCCC-ccceec--c------ccCCcCCEEECCCCCcc---cccccccCCcCCEEECCCCcc
Confidence 654 345888999998887 555442 1 46788888888887543 344566678888888887653
Q ss_pred ccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceEEecCCccccc
Q 036801 162 LTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
.. ++ +..+++|+.|++..+.+ +. ++-+..++|+..++.- .+.+++ +..+++|+.|++++| .++.
T Consensus 183 ~~---l~---l~~l~~L~~L~l~~N~l---~~-~~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N-~l~~ 247 (457)
T 3bz5_A 183 TE---LD---VSQNKLLNRLNCDTNNI---TK-LDLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVN-PLTE 247 (457)
T ss_dssp CC---CC---CTTCTTCCEEECCSSCC---SC-CCCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS-CCSC
T ss_pred ce---ec---cccCCCCCEEECcCCcC---Ce-eccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCC-cCCC
Confidence 22 32 56678888888866666 33 2322233344333332 455542 567789999999988 4444
Q ss_pred cCCCCCCCCCc----------CEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecc
Q 036801 241 LVPSSTSFQNL----------TTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF 310 (388)
Q Consensus 241 l~~~~~~~~~L----------~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 310 (388)
++ ...+++| +.+++++|..+..++. ..+++|+.|++++|..++.+....... ... .....
T Consensus 248 ~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L--~~L--~l~~~ 317 (457)
T 3bz5_A 248 LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGI--TEL--DLSQN 317 (457)
T ss_dssp CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCC--SCC--CCTTC
T ss_pred cC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCcc--eEe--chhhc
Confidence 43 2344444 4555555554555543 367899999999988776665311000 000 01224
Q ss_pred cccceeecccccccceeccCcccccCCCcceEeccCCcccccC
Q 036801 311 SKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF 353 (388)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 353 (388)
++|+.|+++++ .+..++ . ..+++|+.|+++++ +++.+
T Consensus 318 ~~L~~L~L~~N-~l~~l~--l--~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 318 PKLVYLYLNNT-ELTELD--V--SHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TTCCEEECTTC-CCSCCC--C--TTCTTCSEEECCSS-CCCBC
T ss_pred ccCCEEECCCC-cccccc--c--ccCCcCcEEECCCC-CCCCc
Confidence 56677776664 455553 2 56899999999874 44443
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=8.7e-18 Score=154.32 Aligned_cols=245 Identities=13% Similarity=0.025 Sum_probs=130.8
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|++++| .+..++... +..+++|++|+++++ .+...++ +..+++|++|++++| .++.+
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~----~~~l~~L~~L~Ls~n-~l~~l- 95 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD--------LAPFTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNN-YVQEL- 95 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH--------HTTCTTCCEEECTTS-CCEEEEE----ETTCTTCCEEECCSS-EEEEE-
T ss_pred cCCCCCEEECcCC-ccCcCCHHH--------hhCCCcCCEEECCCC-cCCcchh----hhhcCCCCEEECcCC-ccccc-
Confidence 4556666666666 344433211 445666666666653 3443321 234666666666666 34433
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP 191 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 191 (388)
...++|++|++++|.+ ..++...+++|++|+++++.... .+...+..+++|+.|++..+.+
T Consensus 96 ---------~~~~~L~~L~l~~n~l----~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l--- 156 (317)
T 3o53_A 96 ---------LVGPSIETLHAANNNI----SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEI--- 156 (317)
T ss_dssp ---------EECTTCCEEECCSSCC----SEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCC---
T ss_pred ---------cCCCCcCEEECCCCcc----CCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCC---
Confidence 2335666666666665 34444556667777766654322 2223455566777777744555
Q ss_pred ceeecCccccccceeeeeeccceeccccCC-CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801 192 KEKVENGVEVIIREAYNCYDMKYILKHESS-SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270 (388)
Q Consensus 192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 270 (388)
+...+ ..+ ..+++|+.|++++|. ++.++. ...+++|+.|+++++ .+..++..
T Consensus 157 ~~~~~----------------------~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~-- 209 (317)
T 3o53_A 157 DTVNF----------------------AELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE-- 209 (317)
T ss_dssp CEEEG----------------------GGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--
T ss_pred CcccH----------------------HHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhh--
Confidence 32222 111 245667777776663 444422 223666777777653 45555443
Q ss_pred hhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCCcc
Q 036801 271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDCTN 349 (388)
Q Consensus 271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~ 349 (388)
...+++|++|+++++ .++.+... ...+++|+.|++.+++-. ..++. ++..++.|+.+++.+++.
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l~~~------------~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLIEKA------------LRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTT------------CCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCC-cccchhhH------------hhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchh
Confidence 345667777777554 34443221 123467777777765422 12222 224567777777776666
Q ss_pred cccC
Q 036801 350 MEIF 353 (388)
Q Consensus 350 l~~l 353 (388)
++..
T Consensus 275 l~~~ 278 (317)
T 3o53_A 275 LTGQ 278 (317)
T ss_dssp HHSS
T ss_pred ccCC
Confidence 5554
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.3e-17 Score=148.08 Aligned_cols=220 Identities=14% Similarity=0.035 Sum_probs=160.1
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.++.++ .+++.+ |. + -.++|++|+++++ .+..++... +..+++|++|++.++ .+..+.+..
T Consensus 14 ~~~~c~~-~~l~~i-p~--~---~~~~l~~L~l~~n-~i~~~~~~~--------~~~~~~L~~L~l~~n-~l~~~~~~~- 75 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV-PV--G---IPAASQRIFLHGN-RISHVPAAS--------FRACRNLTILWLHSN-VLARIDAAA- 75 (285)
T ss_dssp CEEECCS-SCCSSC-CT--T---CCTTCSEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCCEECTTT-
T ss_pred eEEEcCc-CCcccC-Cc--C---CCCCceEEEeeCC-cCCccCHHH--------cccCCCCCEEECCCC-ccceeCHhh-
Confidence 4566665 456655 43 2 3567999999998 577665432 567899999999875 677776554
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc---hhhccCccEeecccccccccc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS---KDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp---~~~l~~L~~L~l~~~~~~~~~ 165 (388)
+..+++|++|++++|..+..+++..+ ..+++|++|++++|.+ ..++ ...+++|++|+++++....
T Consensus 76 -~~~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~-- 143 (285)
T 1ozn_A 76 -FTGLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQA-- 143 (285)
T ss_dssp -TTTCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred -cCCccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcC----CEECHhHhhCCcCCCEEECCCCcccc--
Confidence 67789999999999866777755554 5789999999999877 3333 3457899999999875433
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
.+...+..+++|+.|++..+.+ +. ++ + ..+..+++|+.|++++|......+..+
T Consensus 144 -~~~~~~~~l~~L~~L~l~~n~l---~~-~~--------------------~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 144 -LPDDTFRDLGNLTHLFLHGNRI---SS-VP--------------------E-RAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCC---CE-EC--------------------T-TTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred -cCHhHhccCCCccEEECCCCcc---cc-cC--------------------H-HHhcCccccCEEECCCCcccccCHhHc
Confidence 4444677899999999966677 32 22 1 456678999999999985444446677
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCA 286 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 286 (388)
..+++|+.|+++++ .+..++.. ....+++|++|++++++
T Consensus 198 ~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence 88899999999975 56666654 34578999999997764
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.8e-17 Score=151.86 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=180.3
Q ss_pred cccceEeccccccccc--ccCCCcccccCCCccEEEeecCCCceE-ecccccCCccccccCCccEEEEeecCcccccccc
Q 036801 67 PRLQYLKMYDLEKLTS--FSTGDVHMLEFPSLKELWISRCPGFMV-KFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF 143 (388)
Q Consensus 67 ~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l 143 (388)
.+++.|++.++ .+.. ..+.. +..+++|++|+++++..+.. +|... ..+++|++|++++|.+. ..+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~---~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVS---GAI 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG--GGGCTTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCE---EEC
T ss_pred ceEEEEECCCC-CccCCcccChh--HhCCCCCCeeeCCCCCcccccCChhH------hcCCCCCEEECcCCeeC---CcC
Confidence 67999999975 5664 22332 67899999999996446653 44443 58999999999999873 234
Q ss_pred ch--hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCC
Q 036801 144 SK--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESS 221 (388)
Q Consensus 144 p~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l 221 (388)
|. ..+++|++|+++++.... ..|. .+..+++|++|++..+.+ +..+| ..+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~--~~p~-~~~~l~~L~~L~L~~N~l---~~~~p----------------------~~l 169 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSG--TLPP-SISSLPNLVGITFDGNRI---SGAIP----------------------DSY 169 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEES--CCCG-GGGGCTTCCEEECCSSCC---EEECC----------------------GGG
T ss_pred CHHHhCCCCCCEEeCCCCccCC--cCCh-HHhcCCCCCeEECcCCcc---cCcCC----------------------HHH
Confidence 43 458899999999986442 3443 678899999999977777 44444 444
Q ss_pred CCCC-ccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCc
Q 036801 222 SIMD-NLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDH 300 (388)
Q Consensus 222 ~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 300 (388)
..++ +|+.|++++|......|..+..++ |+.|+++++ .+...... .+..+++|+.|+++++. ++.....
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~------ 239 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASV-LFGSDKNTQKIHLAKNS-LAFDLGK------ 239 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGG-GCCTTSCCSEEECCSSE-ECCBGGG------
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCH-HHhcCCCCCEEECCCCc-eeeecCc------
Confidence 5566 999999999865556666676776 999999975 45544433 34578999999997764 3322211
Q ss_pred cccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEeccCCccccc
Q 036801 301 DAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLNMWDEACWAW 378 (388)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 378 (388)
...+++|++|+++++.-...++... ..+++|++|++++++--..+|.. ..+++|+.+++. ++.|-+
T Consensus 240 ------~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~---~N~~lc 305 (313)
T 1ogq_A 240 ------VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA---NNKCLC 305 (313)
T ss_dssp ------CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC---SSSEEE
T ss_pred ------ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhc---CCCCcc
Confidence 1246899999999975333566544 78999999999997655578776 578899999888 555443
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2e-16 Score=151.89 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=135.0
Q ss_pred ccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEee
Q 036801 79 KLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLD 155 (388)
Q Consensus 79 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~ 155 (388)
.++.+|... .++++.|+++++ .+..++...+ ..+++|++|++++|.+ ..++. ..+++|++|+
T Consensus 54 ~l~~iP~~~-----~~~l~~L~L~~n-~i~~~~~~~~-----~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 54 NLREVPDGI-----STNTRLLNLHEN-QIQIIKVNSF-----KHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp CCSSCCSCC-----CTTCSEEECCSC-CCCEECTTTT-----SSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEE
T ss_pred CcCcCCCCC-----CCCCcEEEccCC-cCCeeCHHHh-----hCCCCCCEEECCCCcC----CccChhhccCCccCCEEE
Confidence 444555442 455666666655 4555544443 4566666666666554 22222 2355666666
Q ss_pred ccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCC
Q 036801 156 VEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSC 235 (388)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c 235 (388)
++++.... ++...+..+++|+.|++..|.+ +. ++ + ..+..+++|+.|++.+|
T Consensus 119 L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~i---~~-~~--------------------~-~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 119 LFDNRLTT---IPNGAFVYLSKLKELWLRNNPI---ES-IP--------------------S-YAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CCSSCCSS---CCTTTSCSCSSCCEEECCSCCC---CE-EC--------------------T-TTTTTCTTCCEEECCCC
T ss_pred CCCCcCCe---eCHhHhhccccCceeeCCCCcc---cc-cC--------------------H-HHhhhCcccCEeCCCCC
Confidence 66653222 3333456667777777755555 22 11 1 34555667777777766
Q ss_pred ccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccc
Q 036801 236 HHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLN 314 (388)
Q Consensus 236 ~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~ 314 (388)
..+..++. .+..+++|++|+++++ .+..++. ...+++|++|+++++ .++.+.... +..+++|+
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~-----------~~~l~~L~ 234 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGN-HLSAIRPGS-----------FQGLMHLQ 234 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTS-CCCEECTTT-----------TTTCTTCC
T ss_pred CCcceeCcchhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCC-ccCccChhh-----------hccCccCC
Confidence 66665554 3456677777777654 4555543 235667777777555 344332111 12356777
Q ss_pred eeecccccccceeccCcccccCCCcceEeccCCcccccCCCCC-cCCCCcceEEEeccCCcccccccCc
Q 036801 315 ELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAWKEGL 382 (388)
Q Consensus 315 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~ 382 (388)
.|++.++ .+..+.... +..+++|+.|+++++ +++.+|... ..+++|+.|++. ++.|.++.++
T Consensus 235 ~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~---~Np~~CdC~l 297 (440)
T 3zyj_A 235 KLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH---HNPWNCNCDI 297 (440)
T ss_dssp EEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC---SSCEECSSTT
T ss_pred EEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC---CCCccCCCCc
Confidence 7777775 455554432 356777888888774 566666543 456778888877 6666665543
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=3.6e-16 Score=150.54 Aligned_cols=240 Identities=14% Similarity=0.034 Sum_probs=104.8
Q ss_pred cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
+..+++|++|++.++ ++..++.. .++|++|++++| .++.++ .. ..+++|++|++++|.+ ..
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~------~~~L~~L~L~~n-~l~~l~-~~------~~l~~L~~L~l~~N~l----~~ 209 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDL------PPSLEFIAAGNN-QLEELP-EL------QNLPFLTAIYADNNSL----KK 209 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCC------CTTCCEEECCSS-CCSSCC-CC------TTCTTCCEEECCSSCC----SS
T ss_pred cCCCCCCCEEECCCC-cCcccCCC------cccccEEECcCC-cCCcCc-cc------cCCCCCCEEECCCCcC----Cc
Confidence 344555555555543 34443322 345555555555 333333 11 3566666666666554 22
Q ss_pred cchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCC
Q 036801 143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESS 221 (388)
Q Consensus 143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l 221 (388)
+|.. .++|++|+++++.... +| .+..+++|+.|++..+.+ +. ++.. ..+|+..++.- .+.+++.
T Consensus 210 l~~~-~~~L~~L~l~~n~l~~---lp--~~~~l~~L~~L~l~~N~l---~~-l~~~-~~~L~~L~l~~N~l~~l~~---- 274 (454)
T 1jl5_A 210 LPDL-PLSLESIVAGNNILEE---LP--ELQNLPFLTTIYADNNLL---KT-LPDL-PPSLEALNVRDNYLTDLPE---- 274 (454)
T ss_dssp CCCC-CTTCCEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCC---SS-CCSC-CTTCCEEECCSSCCSCCCC----
T ss_pred CCCC-cCcccEEECcCCcCCc---cc--ccCCCCCCCEEECCCCcC---Cc-cccc-ccccCEEECCCCcccccCc----
Confidence 2221 2466666666653222 33 245666666666644555 21 2221 12233222222 3333321
Q ss_pred CCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCcc
Q 036801 222 SIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHD 301 (388)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~ 301 (388)
.+++|+.|++++|. ++.++. ..++|+.|+++++ .+..++. ..++|++|+++++ .++.+..
T Consensus 275 -~~~~L~~L~ls~N~-l~~l~~---~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~-------- 334 (454)
T 1jl5_A 275 -LPQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIELPA-------- 334 (454)
T ss_dssp -CCTTCCEEECCSSC-CSEESC---CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCCCC--------
T ss_pred -ccCcCCEEECcCCc-cCcccC---cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-ccccccc--------
Confidence 12456666665552 332221 1135555555543 3333221 1135666666443 2332211
Q ss_pred ccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccc--cCCCCCcCC-------------CCcceE
Q 036801 302 AAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNME--IFSRGELST-------------PMLHKV 366 (388)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------------~~L~~l 366 (388)
.+++|+.|+++++ .+..++. .+++|++|++++++-.. .+|..+..+ ++|+.+
T Consensus 335 -------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 335 -------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp -------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred -------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 1356666666665 3455544 24667777776643222 344444333 566666
Q ss_pred EEe
Q 036801 367 QLN 369 (388)
Q Consensus 367 ~l~ 369 (388)
+++
T Consensus 402 ~ls 404 (454)
T 1jl5_A 402 HVE 404 (454)
T ss_dssp ---
T ss_pred ECC
Confidence 665
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=9.9e-18 Score=153.96 Aligned_cols=269 Identities=13% Similarity=0.120 Sum_probs=187.1
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..+++|++|++++| .++.+.|.+++ .+++|++|++++| .+...+. +..+++|++|+++++ .+..
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~----------~~~l~~L~~L~Ls~n-~l~~ 94 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAADLA---PFTKLELLNLSSN-VLYETLD----------LESLSTLRTLDLNNN-YVQE 94 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHHHHT---TCTTCCEEECTTS-CCEEEEE----------ETTCTTCCEEECCSS-EEEE
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHhh---CCCcCCEEECCCC-cCCcchh----------hhhcCCCCEEECcCC-cccc
Confidence 35679999999996 56777667788 8999999999998 4555443 557899999999975 5665
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~ 162 (388)
++ ..++|++|++++| .+..++. ..+++|++|++++|.+. .+.......+++|++|+++++...
T Consensus 95 l~-------~~~~L~~L~l~~n-~l~~~~~--------~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 95 LL-------VGPSIETLHAANN-NISRVSC--------SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EE-------ECTTCCEEECCSS-CCSEEEE--------CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cc-------CCCCcCEEECCCC-ccCCcCc--------cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence 54 3589999999998 5665543 35788999999998873 122223455889999999997644
Q ss_pred cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccC
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLV 242 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~ 242 (388)
. ..+......+++|+.|++..+.+ +.. .....+++|+.|++++| .++.++
T Consensus 158 ~--~~~~~~~~~l~~L~~L~L~~N~l---~~~------------------------~~~~~l~~L~~L~Ls~N-~l~~l~ 207 (317)
T 3o53_A 158 T--VNFAELAASSDTLEHLNLQYNFI---YDV------------------------KGQVVFAKLKTLDLSSN-KLAFMG 207 (317)
T ss_dssp E--EEGGGGGGGTTTCCEEECTTSCC---CEE------------------------ECCCCCTTCCEEECCSS-CCCEEC
T ss_pred c--ccHHHHhhccCcCCEEECCCCcC---ccc------------------------ccccccccCCEEECCCC-cCCcch
Confidence 3 23333445789999999966677 332 22224789999999988 567777
Q ss_pred CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccc
Q 036801 243 PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLE 322 (388)
Q Consensus 243 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 322 (388)
+.+..+++|+.|+++++ .+..++.. ...+++|+.|++++++-....... ....+++|+.|++.++.
T Consensus 208 ~~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~-----------~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRD-----------FFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHH-----------HHHTCHHHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHH-----------HHhccccceEEECCCch
Confidence 77888999999999975 67777663 457899999999876432111100 01236788888888776
Q ss_pred ccceeccCcccccCCCcceEeccCCccc
Q 036801 323 SLRSFYSGYCALNFPSLERLLVDDCTNM 350 (388)
Q Consensus 323 ~l~~l~~~~~~~~~~~L~~L~l~~c~~l 350 (388)
.++...... ...+.+....-..|..+
T Consensus 274 ~l~~~~~~~--~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 274 KLTGQNEEE--CTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp HHHSSSSCC--CSSTTCEEETTEEEBCC
T ss_pred hccCCchhc--cCCCceecccceeeccC
Confidence 666544332 22343444333345443
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=5.7e-16 Score=155.20 Aligned_cols=129 Identities=22% Similarity=0.233 Sum_probs=81.7
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
++++|++++ +.++.+++.+|. ++++|++|+|++| +++.++... +..+++|++|+++++ +++.++..
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~---~l~~L~~L~Ls~N-~i~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~l~~~ 118 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFF---SFPELQVLDLSRC-EIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALG 118 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTT---TCTTCCEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCCEECGG
T ss_pred CCCEEEeeC-CCCCCCCHHHHh---CCCCCCEEECCCC-cCCCcChhH--------hcCCCCCCEEEccCC-cCCCCCHH
Confidence 678888887 457777666777 7888888888887 566665542 456777777777764 56666655
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFV 159 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~ 159 (388)
. +..+++|++|++++| .++.++...+ ..+++|++|++++|.+.. ...|. +.+++|++|+++++
T Consensus 119 ~--f~~L~~L~~L~Ls~N-~l~~l~~~~~-----~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 119 A--FSGLSSLQKLVAVET-NLASLENFPI-----GHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp G--GTTCTTCCEEECTTS-CCCCSTTCCC-----TTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSS
T ss_pred H--hcCCCCCCEEECCCC-cCCCCChhhh-----hcCcccCeeccccCcccc--CCCchhhccchhhhhhcccCc
Confidence 3 556777777777776 5555555444 466666666666665411 11122 23556666666554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=2.6e-16 Score=151.69 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=163.7
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
+.++++|++|++++| .++.+.|..+. ++++|++|+|++| .+..++... +..+++|++|++.++ .+.
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~ 160 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGAFN---GLASLNTLELFDN-WLTVIPSGA--------FEYLSKLRELWLRNN-PIE 160 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCSBCCTTT--------SSSCTTCCEEECCSC-CCC
T ss_pred cCCCCCCCEEECCCC-ccCCcChhhcc---CcccCCEEECCCC-cCCccChhh--------hcccCCCCEEECCCC-Ccc
Confidence 467899999999986 57777777788 8999999999998 566665542 557999999999975 688
Q ss_pred cccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCccEeeccccc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLKCLDVEFVD 160 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~~L~l~~~~ 160 (388)
.++... +..+++|++|++++|..+..++...+ ..+++|++|++++|.+ ..+|. ..+++|+.|+++++.
T Consensus 161 ~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 161 SIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF-----EGLFNLKYLNLGMCNI----KDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCTTCCEEECTTSCC----SSCCCCTTCTTCCEEECTTSC
T ss_pred eeCHhH--HhcCCcccEEeCCCCCCccccChhhc-----cCCCCCCEEECCCCcc----cccccccccccccEEECcCCc
Confidence 887765 77899999999999989998887766 6899999999999987 34443 458899999999986
Q ss_pred cccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801 161 ELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 161 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
... .+...+..+++|+.|++..+.+ +.+.+ ..+..+++|+.|++++| .++.
T Consensus 230 l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~----------------------~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 230 FPE---IRPGSFHGLSSLKKLWVMNSQV---SLIER----------------------NAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp CSE---ECGGGGTTCTTCCEEECTTSCC---CEECT----------------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred Ccc---cCcccccCccCCCEEEeCCCcC---ceECH----------------------HHhcCCCCCCEEECCCC-cCCc
Confidence 543 4344788999999999966677 33322 56677899999999998 5666
Q ss_pred cCCC-CCCCCCcCEEEEecCC
Q 036801 241 LVPS-STSFQNLTTLEISHCN 260 (388)
Q Consensus 241 l~~~-~~~~~~L~~L~l~~c~ 260 (388)
++.. +..+++|+.|++++++
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSC
T ss_pred cChHHhccccCCCEEEccCCC
Confidence 6553 5778999999998753
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=147.53 Aligned_cols=253 Identities=11% Similarity=0.039 Sum_probs=171.0
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|+++++ .++.+++..++ ++++|++|++++| .+..++... +..+++|++|+++++ .+..++.
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQ---RCVNLQALVLTSN-GINTIEEDS--------FSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT--------TTTCTTCCEEECCSS-CCSSCCH
T ss_pred ccCcEEECCCC-cCcccCHHHhc---cCCCCCEEECCCC-ccCccCHhh--------cCCCCCCCEEECCCC-cCCcCCH
Confidence 58999999986 57777666788 8999999999998 576664432 567899999999874 6777765
Q ss_pred CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
.. +..+++|++|+++++ .+..++. ..+ ..+++|++|++++|...+.+..-....+++|++|+++++....
T Consensus 118 ~~--~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 188 (353)
T 2z80_A 118 SW--FKPLSSLTFLNLLGN-PYKTLGETSLF-----SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS- 188 (353)
T ss_dssp HH--HTTCTTCSEEECTTC-CCSSSCSSCSC-----TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-
T ss_pred hH--hCCCccCCEEECCCC-CCcccCchhhh-----ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-
Confidence 53 567999999999988 5666665 333 6899999999999853322222223457899999999876433
Q ss_pred cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP- 243 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~- 243 (388)
.....+..+++|+.|++..+.+ + .++. ..+..+++|+.|++++|. ++..+.
T Consensus 189 --~~~~~l~~l~~L~~L~l~~n~l---~-~~~~---------------------~~~~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 189 --YEPKSLKSIQNVSHLILHMKQH---I-LLLE---------------------IFVDVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp --ECTTTTTTCSEEEEEEEECSCS---T-THHH---------------------HHHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred --cCHHHHhccccCCeecCCCCcc---c-cchh---------------------hhhhhcccccEEECCCCc-ccccccc
Confidence 3234678899999999966666 2 2221 122246888999998874 333321
Q ss_pred C---CCCCCCcCEEEEecCCCceeecc---hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceee
Q 036801 244 S---STSFQNLTTLEISHCNGLKNVLT---FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELR 317 (388)
Q Consensus 244 ~---~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~ 317 (388)
. ....+.++.+.++++ .+.+... ......+++|++|+++++ .++.+.... +..+++|+.|+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-----------~~~l~~L~~L~ 307 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-----------FDRLTSLQKIW 307 (353)
T ss_dssp ------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-----------TTTCTTCCEEE
T ss_pred ccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-----------HhcCCCCCEEE
Confidence 1 234566788888765 2332111 113456788999999765 455443221 12468899999
Q ss_pred ccccc
Q 036801 318 LLNLE 322 (388)
Q Consensus 318 l~~c~ 322 (388)
+.+++
T Consensus 308 L~~N~ 312 (353)
T 2z80_A 308 LHTNP 312 (353)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 98865
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.9e-16 Score=144.52 Aligned_cols=242 Identities=20% Similarity=0.185 Sum_probs=160.9
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc--CC
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS--TG 86 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~ 86 (388)
+.++.++ .+++.+ |.. -.++|++|++++| .+..++... +..+++|++|++.++ .+.... +.
T Consensus 10 ~~l~c~~-~~l~~i-p~~-----~~~~l~~L~L~~n-~l~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNS-KGLTSV-PTG-----IPSSATRLELESN-KLQSLPHGV--------FDKLTQLTKLSLSSN-GLSFKGCCSQ 72 (306)
T ss_dssp TEEECCS-SCCSSC-CSC-----CCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCEEEEEEH
T ss_pred CEEEcCC-CCcccC-CCC-----CCCCCCEEECCCC-ccCccCHhH--------hhccccCCEEECCCC-ccCcccCccc
Confidence 4566665 345555 432 3457889999888 466655431 457889999999874 455432 11
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeeccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~ 162 (388)
. ...+++|++|++++| .+..++... ..+++|++|++++|.+ ..++ ...+++|++|+++++...
T Consensus 73 ~--~~~~~~L~~L~Ls~n-~i~~l~~~~------~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 73 S--DFGTTSLKYLDLSFN-GVITMSSNF------LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp H--HHSCSCCCEEECCSC-SEEEEEEEE------ETCTTCCEEECTTSEE----ESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred c--cccccccCEEECCCC-ccccChhhc------CCCCCCCEEECCCCcc----cccccchhhhhccCCCEEECCCCcCC
Confidence 1 345789999999888 566666554 5788999999988776 3332 345789999999887643
Q ss_pred cccccchhHhhcCCCccEEEEEeccCCCCce-eecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccccc
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKE-KVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL 241 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l 241 (388)
. .....+..+++|+.|++..+.+ .+ .++ ..+..+++|+.|++++|......
T Consensus 140 ~---~~~~~~~~l~~L~~L~l~~n~l---~~~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 140 V---AFNGIFNGLSSLEVLKMAGNSF---QENFLP----------------------DIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp E---CSTTTTTTCTTCCEEECTTCEE---GGGEEC----------------------SCCTTCTTCCEEECTTSCCCEEC
T ss_pred c---cchhhcccCcCCCEEECCCCcc---ccccch----------------------hHHhhCcCCCEEECCCCCcCCcC
Confidence 3 3333677889999999954555 22 222 55667889999999988433333
Q ss_pred CCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecc-cccceeeccc
Q 036801 242 VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SKLNELRLLN 320 (388)
Q Consensus 242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~ 320 (388)
+..+..+++|+.|+++++ .+..++... ...+++|+.|+++++. ++...... ...+ ++|+.|++.+
T Consensus 192 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH-IMTSKKQE-----------LQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC-CCBCSSSS-----------CCCCCTTCCEEECTT
T ss_pred HHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC-CcccCHHH-----------HHhhhccCCEEEccC
Confidence 556778899999999875 566665543 3568899999997764 43332211 1123 4899999988
Q ss_pred cc
Q 036801 321 LE 322 (388)
Q Consensus 321 c~ 322 (388)
++
T Consensus 258 N~ 259 (306)
T 2z66_A 258 ND 259 (306)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.3e-15 Score=151.38 Aligned_cols=252 Identities=19% Similarity=0.074 Sum_probs=151.5
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+++.|+++++ .++.+ |..+ .++|++|++++| .++.++. .+++|++|+++++ ++..++.
T Consensus 41 ~l~~L~ls~n-~L~~l-p~~l-----~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGES-GLTTL-PDCL-----PAHITTLVIPDN-NLTSLPA------------LPPELRTLEVSGN-QLTSLPV- 98 (622)
T ss_dssp CCCEEECCSS-CCSCC-CSCC-----CTTCSEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCSCCCC-
T ss_pred CCcEEEecCC-CcCcc-Chhh-----CCCCcEEEecCC-CCCCCCC------------cCCCCCEEEcCCC-cCCcCCC-
Confidence 5788888874 45655 4422 357888999888 4665443 3678888888875 5776654
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTIL 166 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~ 166 (388)
.+++|++|++++| .++.++ ..+++|+.|++++|.+ ..+|.. +++|++|+++++....
T Consensus 99 -----~l~~L~~L~Ls~N-~l~~l~---------~~l~~L~~L~L~~N~l----~~lp~~-l~~L~~L~Ls~N~l~~--- 155 (622)
T 3g06_A 99 -----LPPGLLELSIFSN-PLTHLP---------ALPSGLCKLWIFGNQL----TSLPVL-PPGLQELSVSDNQLAS--- 155 (622)
T ss_dssp -----CCTTCCEEEECSC-CCCCCC---------CCCTTCCEEECCSSCC----SCCCCC-CTTCCEEECCSSCCSC---
T ss_pred -----CCCCCCEEECcCC-cCCCCC---------CCCCCcCEEECCCCCC----CcCCCC-CCCCCEEECcCCcCCC---
Confidence 2788899988887 455443 2457788888888876 445543 5888888888874322
Q ss_pred cchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCC
Q 036801 167 SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSST 246 (388)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 246 (388)
++. .+++|+.|.+..|.+ +. ++ ..+++|+.|++++| .++.++.
T Consensus 156 l~~----~~~~L~~L~L~~N~l---~~-l~-------------------------~~~~~L~~L~Ls~N-~l~~l~~--- 198 (622)
T 3g06_A 156 LPA----LPSELCKLWAYNNQL---TS-LP-------------------------MLPSGLQELSVSDN-QLASLPT--- 198 (622)
T ss_dssp CCC----CCTTCCEEECCSSCC---SC-CC-------------------------CCCTTCCEEECCSS-CCSCCCC---
T ss_pred cCC----ccCCCCEEECCCCCC---CC-Cc-------------------------ccCCCCcEEECCCC-CCCCCCC---
Confidence 222 356788888865666 22 22 12356666666655 3343433
Q ss_pred CCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccce
Q 036801 247 SFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS 326 (388)
Q Consensus 247 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 326 (388)
.+++|+.|.++++ .+..++. .+++|++|+++++ .++.+. ..+++|+.|+++++ .+..
T Consensus 199 ~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~lp---------------~~l~~L~~L~Ls~N-~L~~ 255 (622)
T 3g06_A 199 LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTSLP---------------VLPSELKELMVSGN-RLTS 255 (622)
T ss_dssp CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCC---------------CCCTTCCEEECCSS-CCSC
T ss_pred ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCcCC---------------CCCCcCcEEECCCC-CCCc
Confidence 2355666666643 3444432 2356666666443 343332 02356666666664 4554
Q ss_pred eccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 327 FYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 327 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
++. .+++|+.|++++| .++.+|..+..+++|+.|++.
T Consensus 256 lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 256 LPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred CCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 444 2456666666654 455666555556666666665
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=3.8e-16 Score=150.39 Aligned_cols=224 Identities=13% Similarity=-0.003 Sum_probs=110.7
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccc-------------cce
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPR-------------LQY 71 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------L~~ 71 (388)
..+|++|.++++. ++.+ |.+++ ++++|++|++++|.-...++.. ++.+.+ ++.
T Consensus 10 ~~~L~~L~l~~n~-l~~i-P~~i~---~L~~L~~L~l~~n~~~~~~p~~---------~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-LTEM-PVEAE---NVKSKTEYYNAWSEWERNAPPG---------NGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTT---------SCCCHHHHHHHHHHHHHHTCSE
T ss_pred cccchhhhcccCc-hhhC-ChhHh---cccchhhhhccCCcccccCCcc---------cccchhcchhhhhhhhccCCCE
Confidence 4689999999865 5555 77788 8999999999998544344444 333443 477
Q ss_pred EecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCc
Q 036801 72 LKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKL 151 (388)
Q Consensus 72 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L 151 (388)
|++.++ .+..++.. .++|++|+++++ .++.++ ...++|++|++++|.+ ..++.. .++|
T Consensus 76 L~l~~~-~l~~lp~~------~~~L~~L~l~~n-~l~~lp---------~~~~~L~~L~l~~n~l----~~l~~~-~~~L 133 (454)
T 1jl5_A 76 LELNNL-GLSSLPEL------PPHLESLVASCN-SLTELP---------ELPQSLKSLLVDNNNL----KALSDL-PPLL 133 (454)
T ss_dssp EECTTS-CCSCCCSC------CTTCSEEECCSS-CCSSCC---------CCCTTCCEEECCSSCC----SCCCSC-CTTC
T ss_pred EEecCC-ccccCCCC------cCCCCEEEccCC-cCCccc---------cccCCCcEEECCCCcc----CcccCC-CCCC
Confidence 888765 46665443 577888888776 444333 2346777777777665 222221 2577
Q ss_pred cEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeee-ccceeccccCCCCCCccceE
Q 036801 152 KCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCY-DMKYILKHESSSIMDNLVIL 230 (388)
Q Consensus 152 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l-~l~~i~~~~~l~~l~~L~~L 230 (388)
++|+++++.... +| .+..+++|++|++..+.+ +. +|.. ..+|+..++.- .+.++ ..++.+++|+.|
T Consensus 134 ~~L~L~~n~l~~---lp--~~~~l~~L~~L~l~~N~l---~~-lp~~-~~~L~~L~L~~n~l~~l---~~~~~l~~L~~L 200 (454)
T 1jl5_A 134 EYLGVSNNQLEK---LP--ELQNSSFLKIIDVDNNSL---KK-LPDL-PPSLEFIAAGNNQLEEL---PELQNLPFLTAI 200 (454)
T ss_dssp CEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCC---SC-CCCC-CTTCCEEECCSSCCSSC---CCCTTCTTCCEE
T ss_pred CEEECcCCCCCC---Cc--ccCCCCCCCEEECCCCcC---cc-cCCC-cccccEEECcCCcCCcC---ccccCCCCCCEE
Confidence 777777764322 44 356677777777755555 22 3322 12333222222 33333 235566667777
Q ss_pred EecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 231 RVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 231 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
++++|. ++.+|.. .++|+.|+++++ .+..++. ...+++|++|+++++
T Consensus 201 ~l~~N~-l~~l~~~---~~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 201 YADNNS-LKKLPDL---PLSLESIVAGNN-ILEELPE---LQNLPFLTTIYADNN 247 (454)
T ss_dssp ECCSSC-CSSCCCC---CTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSS
T ss_pred ECCCCc-CCcCCCC---cCcccEEECcCC-cCCcccc---cCCCCCCCEEECCCC
Confidence 766653 3333321 235666666654 3444442 235566666666543
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=9.5e-16 Score=148.94 Aligned_cols=215 Identities=14% Similarity=0.138 Sum_probs=108.4
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
+++|++|++++| .++.++|.+++ .+++|++|+|++| .+...+. +..+++|++|+++++ .+..++
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~----------l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLA---PFTKLELLNLSSN-VLYETLD----------LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGT---TCTTCCEEECTTS-CCEEEEE----------CTTCTTCCEEECCSS-EEEEEE
T ss_pred CCCccEEEeeCC-cCCCCCHHHHh---CCCCCCEEEeeCC-CCCCCcc----------cccCCCCCEEEecCC-cCCCCC
Confidence 446666666664 34455455565 5666666666666 3433322 335666666666653 444433
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
..++|++|++++| .+..++. ..+++|+.|++++|.+. ++.....+.+++|+.|+++++....
T Consensus 97 -------~~~~L~~L~L~~N-~l~~~~~--------~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~- 158 (487)
T 3oja_A 97 -------VGPSIETLHAANN-NISRVSC--------SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDT- 158 (487)
T ss_dssp -------ECTTCCEEECCSS-CCCCEEE--------CCCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCE-
T ss_pred -------CCCCcCEEECcCC-cCCCCCc--------cccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCC-
Confidence 1356666666665 3433322 23456666666666552 1111122345666666666653322
Q ss_pred cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS 244 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 244 (388)
..+......+++|+.|+++.|.+ +.. .....+++|+.|++++| .++.+++.
T Consensus 159 -~~~~~l~~~l~~L~~L~Ls~N~l---~~~------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 209 (487)
T 3oja_A 159 -VNFAELAASSDTLEHLNLQYNFI---YDV------------------------KGQVVFAKLKTLDLSSN-KLAFMGPE 209 (487)
T ss_dssp -EEGGGGGGGTTTCCEEECTTSCC---CEE------------------------ECCCCCTTCCEEECCSS-CCCEECGG
T ss_pred -cChHHHhhhCCcccEEecCCCcc---ccc------------------------cccccCCCCCEEECCCC-CCCCCCHh
Confidence 22222223556666666644444 221 11113455666666555 34444444
Q ss_pred CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 245 STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 245 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
+..+++|+.|+++++ .+..+|.. ...+++|+.|++.++
T Consensus 210 ~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 210 FQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGN 247 (487)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTC
T ss_pred HcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCC
Confidence 555555666666543 34444432 234555555555443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1e-15 Score=139.62 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=161.8
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|+++++ .++.+++..++ ++++|++|++++| .+..+.... .....+++|++|+++++ .+..++.
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~------~~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFD---KLTQLTKLSLSSN-GLSFKGCCS------QSDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCEEEEEE------HHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCEEECCCC-ccCccCHhHhh---ccccCCEEECCCC-ccCcccCcc------cccccccccCEEECCCC-ccccChh
Confidence 58999999986 46666555567 8999999999998 455442110 01446899999999975 5766655
Q ss_pred CCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
. +..+++|++|+++++ .+..++. ..+ ..+++|++|++++|.+.. ...-....+++|++|+++++....
T Consensus 96 ~---~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 96 N---FLGLEQLEHLDFQHS-NLKQMSEFSVF-----LSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp E---EETCTTCCEEECTTS-EEESSTTTTTT-----TTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred h---cCCCCCCCEEECCCC-cccccccchhh-----hhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCcccc-
Confidence 4 557999999999987 5555544 223 588999999999987631 111113457899999999876432
Q ss_pred cccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP- 243 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~- 243 (388)
...+. .+..+++|+.|++..+.+ +...+ ..+..+++|+.|++++|. ++.++.
T Consensus 165 ~~~~~-~~~~l~~L~~L~Ls~n~l---~~~~~----------------------~~~~~l~~L~~L~L~~N~-l~~~~~~ 217 (306)
T 2z66_A 165 NFLPD-IFTELRNLTFLDLSQCQL---EQLSP----------------------TAFNSLSSLQVLNMSHNN-FFSLDTF 217 (306)
T ss_dssp GEECS-CCTTCTTCCEEECTTSCC---CEECT----------------------TTTTTCTTCCEEECTTSC-CSBCCSG
T ss_pred ccchh-HHhhCcCCCEEECCCCCc---CCcCH----------------------HHhcCCCCCCEEECCCCc-cCccChh
Confidence 22333 677899999999966677 33322 566678999999999884 444443
Q ss_pred CCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeecccc
Q 036801 244 SSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIESCA 286 (388)
Q Consensus 244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 286 (388)
.+..+++|+.|+++++ .+.......+ ..+ ++|++|++++++
T Consensus 218 ~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGTTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred hccCcccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCCC
Confidence 5678899999999976 4555443322 345 489999997754
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.2e-17 Score=166.49 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=103.2
Q ss_pred cCCCcccEEeEecCCCCcccc--ccc-----------ccccccccccceeeccccccccEeeeccccccccccc-ccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLF--SSS-----------TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI-VIFPR 68 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~--p~~-----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 68 (388)
..+++|++|++++|....+.. |.. +.. .+++|++|++++|. +...... .+ ..+++
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~-~~~~~~~--------~l~~~~~~ 131 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMV-VTDDCLE--------LIAKSFKN 131 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCB-CCHHHHH--------HHHHHCTT
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcE-EcHHHHH--------HHHHhCCC
Confidence 357899999999987654321 111 122 67899999999983 3221111 02 25899
Q ss_pred cceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecC-ccccccccc--h
Q 036801 69 LQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKY-ITTNKFLFS--K 145 (388)
Q Consensus 69 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~-~~~~~~~lp--~ 145 (388)
|++|++.+|..+....... ....+++|++|++++|. +.......+ ..++..+++|++|+++++. .+ ....++ .
T Consensus 132 L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~ 207 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESD-VDDVSGHWL-SHFPDTYTSLVSLNISCLASEV-SFSALERLV 207 (594)
T ss_dssp CCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCE-EECCCGGGG-GGSCTTCCCCCEEECTTCCSCC-CHHHHHHHH
T ss_pred CcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCc-cCCcchHHH-HHHhhcCCcCcEEEecccCCcC-CHHHHHHHH
Confidence 9999999886665522111 13468999999999884 443221111 1223577899999998875 11 001111 1
Q ss_pred hhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 146 DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 146 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
..+++|++|++++|.... . ++ ..+..+++|+.|.+
T Consensus 208 ~~~~~L~~L~L~~~~~~~-~-l~-~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLE-K-LA-TLLQRAPQLEELGT 242 (594)
T ss_dssp HHCTTCCEEECCTTSCHH-H-HH-HHHHHCTTCSEEEC
T ss_pred HhCCCCcEEecCCCCcHH-H-HH-HHHhcCCcceEccc
Confidence 237899999999986665 3 33 36778899999987
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=7.5e-17 Score=160.61 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCccceEEecC---CccccccC------CCCCCCCCcCEEEEecCCC-ceeecchhhhhccCccCEEeeccccccccccc
Q 036801 224 MDNLVILRVSS---CHHLINLV------PSSTSFQNLTTLEISHCNG-LKNVLTFLIAKTLVRLREMKIESCAMITEIVL 293 (388)
Q Consensus 224 l~~L~~L~l~~---c~~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 293 (388)
+++|+.|++.+ |..++..| ..+..+++|+.|+++.|.+ +.+.....+...+++|++|++.+|. ++....
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 67899999974 44565532 2245688999999987654 3433333344568889999997664 432110
Q ss_pred cCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccC--CCCCcCCCCcceEEEe
Q 036801 294 ADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIF--SRGELSTPMLHKVQLN 369 (388)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~l~l~ 369 (388)
.. ....+++|+.|++++|+ +.......+...+++|++|++++|. ++.. ..-...+|.++...+.
T Consensus 481 ~~----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 481 ME----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HH----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred HH----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 00 01135889999999987 4432111122468999999999987 4332 1112245666655444
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=8.6e-16 Score=149.26 Aligned_cols=239 Identities=13% Similarity=0.036 Sum_probs=170.7
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|++++| .+..++... +..+++|++|+++++ .+...++ +..+++|++|++++| .++.++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAAD--------LAPFTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGG--------GTTCTTCCEEECTTS-CCEEEEE----CTTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHH--------HhCCCCCCEEEeeCC-CCCCCcc----cccCCCCCEEEecCC-cCCCCC
Confidence 4558999999998 566654321 668999999999975 5665443 346999999999998 566553
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP 191 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 191 (388)
..++|+.|++++|.+ ..++...+++|+.|+++++.... .+...+..+++|+.|+++.|.+
T Consensus 97 ----------~~~~L~~L~L~~N~l----~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l--- 156 (487)
T 3oja_A 97 ----------VGPSIETLHAANNNI----SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEI--- 156 (487)
T ss_dssp ----------ECTTCCEEECCSSCC----CCEEECCCSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCC---
T ss_pred ----------CCCCcCEEECcCCcC----CCCCccccCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCC---
Confidence 448899999999987 56666778999999999876433 3333567899999999966777
Q ss_pred ceeecCccccccceeeeeeccceeccccCCC-CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801 192 KEKVENGVEVIIREAYNCYDMKYILKHESSS-IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270 (388)
Q Consensus 192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 270 (388)
+...+ ..+. .+++|+.|++++|. ++.++. ...+++|+.|+++++ .+..++..
T Consensus 157 ~~~~~----------------------~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-- 209 (487)
T 3oja_A 157 DTVNF----------------------AELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE-- 209 (487)
T ss_dssp CEEEG----------------------GGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--
T ss_pred CCcCh----------------------HHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHh--
Confidence 44333 3332 57899999999984 555543 345889999999975 67777664
Q ss_pred hhccCccCEEeeccccccccccccCCCCCccccccceecccccceeeccccccc-ceeccCcccccCCCcceEeccCC
Q 036801 271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESL-RSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
+..+++|+.|+++++ .++.+... ...+++|+.|++.+++-. ..++. ++..++.|+.+++..+
T Consensus 210 ~~~l~~L~~L~Ls~N-~l~~lp~~------------l~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 210 FQSAAGVTWISLRNN-KLVLIEKA------------LRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTV 272 (487)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTT------------CCCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HcCCCCccEEEecCC-cCcccchh------------hccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEEecccc
Confidence 457899999999775 45544322 224689999999887533 23333 2356777777777533
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=8.5e-15 Score=145.64 Aligned_cols=235 Identities=19% Similarity=0.149 Sum_probs=166.4
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|++++|. ++.+ |. .+++|++|++++| .+..++. .+++|++|++.++ ++..++.
T Consensus 61 ~~L~~L~L~~N~-l~~l-p~------~l~~L~~L~Ls~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSL-PA------LPPELRTLEVSGN-QLTSLPV------------LPPGLLELSIFSN-PLTHLPA 118 (622)
T ss_dssp TTCSEEEECSCC-CSCC-CC------CCTTCCEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCCCCCC
T ss_pred CCCcEEEecCCC-CCCC-CC------cCCCCCEEEcCCC-cCCcCCC------------CCCCCCEEECcCC-cCCCCCC
Confidence 689999999964 6655 33 4788999999998 4665444 4789999999874 6777665
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
. +++|++|++++| .++.++ ..+++|++|++++|.+ ..+|. .+++|+.|+++++....
T Consensus 119 ~------l~~L~~L~L~~N-~l~~lp---------~~l~~L~~L~Ls~N~l----~~l~~-~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 119 L------PSGLCKLWIFGN-QLTSLP---------VLPPGLQELSVSDNQL----ASLPA-LPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp C------CTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC--
T ss_pred C------CCCcCEEECCCC-CCCcCC---------CCCCCCCEEECcCCcC----CCcCC-ccCCCCEEECCCCCCCC--
Confidence 2 799999999988 565443 3458999999999877 44443 46799999999875433
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
++ ..+++|+.|++..|.+ +. ++ . .+++|+.|++.+| .++.++.
T Consensus 176 -l~----~~~~~L~~L~Ls~N~l---~~-l~----------------------~---~~~~L~~L~L~~N-~l~~l~~-- 218 (622)
T 3g06_A 176 -LP----MLPSGLQELSVSDNQL---AS-LP----------------------T---LPSELYKLWAYNN-RLTSLPA-- 218 (622)
T ss_dssp -CC----CCCTTCCEEECCSSCC---SC-CC----------------------C---CCTTCCEEECCSS-CCSSCCC--
T ss_pred -Cc----ccCCCCcEEECCCCCC---CC-CC----------------------C---ccchhhEEECcCC-cccccCC--
Confidence 43 4578999999966777 22 22 1 2367888888776 4555543
Q ss_pred CCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccc
Q 036801 246 TSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLR 325 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 325 (388)
.+++|+.|+++++ .+..++ ..+++|++|+++++ .++.+.. .+++|+.|+++++ .+.
T Consensus 219 -~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 219 -LPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp -CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCC
T ss_pred -CCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCC
Confidence 3467888888764 566555 24577888888665 4554432 2477888888876 566
Q ss_pred eeccCcccccCCCcceEeccCCc
Q 036801 326 SFYSGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 326 ~l~~~~~~~~~~~L~~L~l~~c~ 348 (388)
.++... ..+++|+.|++++++
T Consensus 275 ~lp~~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 275 RLPESL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCGGG--GGSCTTCEEECCSCC
T ss_pred cCCHHH--hhccccCEEEecCCC
Confidence 776644 677888888888765
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=3.2e-15 Score=131.40 Aligned_cols=212 Identities=11% Similarity=0.099 Sum_probs=153.5
Q ss_pred CCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCC
Q 036801 16 CMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPS 95 (388)
Q Consensus 16 ~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 95 (388)
|..++.+ |. +. ++|++|++++| +++.++... +..+++|++|++.++..+..++... +..+++
T Consensus 20 c~~l~~i-p~-~~-----~~l~~L~l~~n-~l~~i~~~~--------~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~ 81 (239)
T 2xwt_C 20 CKDIQRI-PS-LP-----PSTQTLKLIET-HLRTIPSHA--------FSNLPNISRIYVSIDVTLQQLESHS--FYNLSK 81 (239)
T ss_dssp ECSCSSC-CC-CC-----TTCCEEEEESC-CCSEECTTT--------TTTCTTCCEEEEECCSSCCEECTTT--EESCTT
T ss_pred ccCcccc-CC-CC-----CcccEEEEeCC-cceEECHHH--------ccCCCCCcEEeCCCCCCcceeCHhH--cCCCcC
Confidence 4446655 43 44 26899999988 577766532 5578999999998754477777764 667899
Q ss_pred ccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch-hhccCcc---EeeccccccccccccchhH
Q 036801 96 LKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK-DLLCKLK---CLDVEFVDELTTILSLDDF 171 (388)
Q Consensus 96 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~-~~l~~L~---~L~l~~~~~~~~~~~~~~~ 171 (388)
|++|++++|..++.++...+ ..+++|++|++++|.+ ..+|. ..+++|+ .|+++++..+. .++...
T Consensus 82 L~~L~l~~~n~l~~i~~~~f-----~~l~~L~~L~l~~n~l----~~lp~~~~l~~L~~L~~L~l~~N~~l~--~i~~~~ 150 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDAL-----KELPLLKFLGIFNTGL----KMFPDLTKVYSTDIFFILEITDNPYMT--SIPVNA 150 (239)
T ss_dssp CCEEEEEEETTCCEECTTSE-----ECCTTCCEEEEEEECC----CSCCCCTTCCBCCSEEEEEEESCTTCC--EECTTT
T ss_pred CcEEECCCCCCeeEcCHHHh-----CCCCCCCEEeCCCCCC----ccccccccccccccccEEECCCCcchh--hcCccc
Confidence 99999998558888877665 6789999999999877 33443 4466776 99999874443 244446
Q ss_pred hhcCCCcc-EEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCC-
Q 036801 172 LQRFHTLK-VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSF- 248 (388)
Q Consensus 172 ~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~- 248 (388)
+..+++|+ .|++..+.+ + .++. ..+.. ++|+.|++.+|..++.+++ .+..+
T Consensus 151 ~~~l~~L~~~L~l~~n~l---~-~i~~---------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGF---T-SVQG---------------------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp TTTTBSSEEEEECCSCCC---C-EECT---------------------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccchhcceeEEEcCCCCC---c-ccCH---------------------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 78899999 999966777 3 3332 23333 7899999999876777755 45677
Q ss_pred CCcCEEEEecCCCceeecchhhhhccCccCEEeeccccc
Q 036801 249 QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAM 287 (388)
Q Consensus 249 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 287 (388)
++|+.|++++ +.+..++.. .+++|+.|++.++..
T Consensus 205 ~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 205 SGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp BCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred cCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 8999999987 467777653 578999999987653
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=6.2e-15 Score=129.50 Aligned_cols=198 Identities=12% Similarity=0.098 Sum_probs=144.8
Q ss_pred cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccch
Q 036801 67 PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFSK 145 (388)
Q Consensus 67 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp~ 145 (388)
++|+.|++.++ +++.++... +..+++|++|+++++..++.++...+ ..+++|++|++++ +.+ ..++.
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f-----~~l~~L~~L~l~~~n~l----~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSF-----YNLSKVTHIEIRNTRNL----TYIDP 98 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT--TTTCTTCCEEEEECCSSCCEECTTTE-----ESCTTCCEEEEEEETTC----CEECT
T ss_pred CcccEEEEeCC-cceEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHc-----CCCcCCcEEECCCCCCe----eEcCH
Confidence 47999999874 688887765 67799999999999865888877665 6889999999998 666 44443
Q ss_pred ---hhccCccEeeccccccccccccchhHhhcCCCcc---EEEEEec-cCCCCceeecCccccccceeeeeeccceeccc
Q 036801 146 ---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLK---VLQIEGY-NYWLPKEKVENGVEVIIREAYNCYDMKYILKH 218 (388)
Q Consensus 146 ---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~ 218 (388)
..+++|++|+++++.... +|. +..+++|+ .|++..+ .+ +. ++ +
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~---lp~--~~~l~~L~~L~~L~l~~N~~l---~~-i~--------------------~- 148 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM---FPD--LTKVYSTDIFFILEITDNPYM---TS-IP--------------------V- 148 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS---CCC--CTTCCBCCSEEEEEEESCTTC---CE-EC--------------------T-
T ss_pred HHhCCCCCCCEEeCCCCCCcc---ccc--cccccccccccEEECCCCcch---hh-cC--------------------c-
Confidence 347899999999876332 443 56677777 9999555 77 32 22 2
Q ss_pred cCCCCCCccc-eEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeeccccccccccccCC
Q 036801 219 ESSSIMDNLV-ILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIESCAMITEIVLADD 296 (388)
Q Consensus 219 ~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~i~~~~~ 296 (388)
..+..+++|+ .|+++++ .++.++......++|+.|+++++..+..++... ...+ ++|++|+++++ .++.+...
T Consensus 149 ~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~-- 223 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK-- 223 (239)
T ss_dssp TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--
T ss_pred ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--
Confidence 4566789999 9999887 456777655444889999999875688776653 3467 89999999764 45555321
Q ss_pred CCCccccccceecccccceeecccccc
Q 036801 297 DDDHDAAKDEVIAFSKLNELRLLNLES 323 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~c~~ 323 (388)
.|++|+.|++.++..
T Consensus 224 ------------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 ------------GLEHLKELIARNTWT 238 (239)
T ss_dssp ------------TCTTCSEEECTTC--
T ss_pred ------------HhccCceeeccCccC
Confidence 378999999988654
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=8.4e-17 Score=160.28 Aligned_cols=314 Identities=12% Similarity=0.036 Sum_probs=162.7
Q ss_pred cCCCcccEEeEecCCCCccccccc---ccccccccccceeeccccccccEeeecccccccccccccccccceEecccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSS---TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEK 79 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (388)
.++++|++|++++|. ++.....| +.. .+++|++|+++++. +..+..... ..-+..+++|++|++.++ .
T Consensus 161 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~--~~~~L~~L~L~~n~-~~~~~~~~l----~~~~~~~~~L~~L~L~~~-~ 231 (592)
T 3ogk_B 161 THCRKIKTLLMEESS-FSEKDGKWLHELAQ--HNTSLEVLNFYMTE-FAKISPKDL----ETIARNCRSLVSVKVGDF-E 231 (592)
T ss_dssp HHCTTCSEEECTTCE-EECCCSHHHHHHHH--HCCCCCEEECTTCC-CSSCCHHHH----HHHHHHCTTCCEEECSSC-B
T ss_pred hhCCCCCEEECcccc-ccCcchhHHHHHHh--cCCCccEEEeeccC-CCccCHHHH----HHHHhhCCCCcEEeccCc-c
Confidence 368999999999985 33322221 222 68899999998873 331111100 001446889999999885 4
Q ss_pred cccccCCCcccccCCCccEEEeecCCCceE---eccccc--------------C---CccccccCCccEEEEeecCcccc
Q 036801 80 LTSFSTGDVHMLEFPSLKELWISRCPGFMV---KFKRTT--------------N---DLTKKVFPNLEELIVDAKYITTN 139 (388)
Q Consensus 80 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~~--------------~---~~~~~~l~~L~~L~i~~~~~~~~ 139 (388)
+..++.. +..+++|++|.++.+..... ...... . ......+++|++|++++|.+..
T Consensus 232 ~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~- 307 (592)
T 3ogk_B 232 ILELVGF---FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET- 307 (592)
T ss_dssp GGGGHHH---HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-
T ss_pred HHHHHHH---HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-
Confidence 5554422 45577788887764322100 000000 0 0001234445555554444210
Q ss_pred ccccc--hhhccCccEeeccccccccccccchhHhhcCCCccEEEEE-----------eccCCCCceeecCcccccccee
Q 036801 140 KFLFS--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIE-----------GYNYWLPKEKVENGVEVIIREA 206 (388)
Q Consensus 140 ~~~lp--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-----------~~~l~~~~~~~~~~~~~~L~~~ 206 (388)
..++ ...+++|++|+++.+ .. +.........+++|++|++. |+.+ +..
T Consensus 308 -~~~~~~~~~~~~L~~L~L~~~--~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~---~~~------------ 368 (592)
T 3ogk_B 308 -EDHCTLIQKCPNLEVLETRNV--IG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV---SQR------------ 368 (592)
T ss_dssp -HHHHHHHTTCTTCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC---CHH------------
T ss_pred -HHHHHHHHhCcCCCEEeccCc--cC-HHHHHHHHHhCCCCCEEEeecCccccccccccCcc---CHH------------
Confidence 0011 123445555554421 11 11111233344455555552 2232 100
Q ss_pred eeeeccceeccccCCCCCCccceEEecCCcccccc-CCCC-CCCCCcCEEEEec---CCCceeecch----hhhhccCcc
Q 036801 207 YNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL-VPSS-TSFQNLTTLEISH---CNGLKNVLTF----LIAKTLVRL 277 (388)
Q Consensus 207 ~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l-~~~~-~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~~~~L 277 (388)
++. .....+++|++|++ +|..++.. +..+ ..+++|+.|++++ |+.+.+.+.. ..+..+++|
T Consensus 369 -------~~~--~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 369 -------GLI--ALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp -------HHH--HHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred -------HHH--HHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 000 11224678888888 44444321 1222 2477888888874 5566654321 234567889
Q ss_pred CEEeeccccc-cccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccc--cCC
Q 036801 278 REMKIESCAM-ITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNME--IFS 354 (388)
Q Consensus 278 ~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~--~l~ 354 (388)
++|++..|.. ++...... ....+++|+.|++.+|. +.+.....+...+++|++|++++|+ +. .++
T Consensus 439 ~~L~L~~~~~~l~~~~~~~----------~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSY----------IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp CEEEEECCGGGCCHHHHHH----------HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred CEEEEecCCCCccHHHHHH----------HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 9999876653 22111000 01125789999998874 4432211123568999999999997 43 244
Q ss_pred CCCcCCCCcceEEEec
Q 036801 355 RGELSTPMLHKVQLNM 370 (388)
Q Consensus 355 ~~~~~~~~L~~l~l~~ 370 (388)
.....+++|+.+++++
T Consensus 507 ~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHHCSSCCEEEEES
T ss_pred HHHHhcCccCeeECcC
Confidence 4344679999999985
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=5.4e-17 Score=161.68 Aligned_cols=316 Identities=13% Similarity=0.060 Sum_probs=163.4
Q ss_pred cCCCcccEEeEecCCCCccccccccccc-ccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSN-SSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
.++++|++|++++|. ++...+.++... ..+++|++|++++|. ..+...... .-+..+++|++|++.+|..+.
T Consensus 153 ~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~----~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 153 ATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALE----RLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHH----HHHHHCTTCCEEECCTTSCHH
T ss_pred HhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHH----HHHHhCCCCcEEecCCCCcHH
Confidence 368999999999976 444333333310 167799999999884 111111000 002357889999998875555
Q ss_pred cccCCCcccccCCCccEEEeecC-------------------CCceEecccc--cCCcc---ccccCCccEEEEeecCcc
Q 036801 82 SFSTGDVHMLEFPSLKELWISRC-------------------PGFMVKFKRT--TNDLT---KKVFPNLEELIVDAKYIT 137 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c-------------------~~l~~~~~~~--~~~~~---~~~l~~L~~L~i~~~~~~ 137 (388)
.++.. ...+++|++|.+..| .+++.+.... ....+ ...+++|++|++++|.+.
T Consensus 226 ~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 KLATL---LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHH---HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHH---HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 53322 445677777764433 3333321000 00001 125677888888776642
Q ss_pred ccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-Ee--------ccCCCCceeecCcc---ccccce
Q 036801 138 TNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EG--------YNYWLPKEKVENGV---EVIIRE 205 (388)
Q Consensus 138 ~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~--------~~l~~~~~~~~~~~---~~~L~~ 205 (388)
..........+++|++|++.+| .. +.........+++|++|++ .| +.+ +......+ .++|+.
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~--~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l---~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY--IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL---TEQGLVSVSMGCPKLES 376 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC---CHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc--cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCC---CHHHHHHHHHhchhHHH
Confidence 1100001234677777777776 22 1122223445777777777 32 222 11000000 122222
Q ss_pred eeeee-ccceeccccCC-CCCCccceEEec-----CCccccccCC------CCCCCCCcCEEEEecCCCceeecchhhhh
Q 036801 206 AYNCY-DMKYILKHESS-SIMDNLVILRVS-----SCHHLINLVP------SSTSFQNLTTLEISHCNGLKNVLTFLIAK 272 (388)
Q Consensus 206 ~~l~l-~l~~i~~~~~l-~~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 272 (388)
..+.- .+..... ..+ ..+++|+.|++. +|..++..+. .+..+++|+.|++++ .+.+.....+..
T Consensus 377 L~~~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 377 VLYFCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp EEEEESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred HHHhcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence 11110 1111100 111 146788888888 5666664322 135677888888864 454443333334
Q ss_pred ccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcc
Q 036801 273 TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTN 349 (388)
Q Consensus 273 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~ 349 (388)
.+++|+.|++++|. ++....... ...+++|+.|++++|+. ...........+++|+.|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~-i~~~~~~~l----------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAG-DSDLGMHHV----------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCC-SSHHHHHHH----------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCC-CcHHHHHHH----------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 47888888887664 322111000 01368889999988864 3222111124578899999988875
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=4.1e-14 Score=131.62 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=120.4
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.++.++ ++++.+ |..+ .+++++|+|++| +++.++... +..+++|++|+++++.-.+.++...
T Consensus 12 ~~v~C~~-~~Lt~i-P~~l-----~~~l~~L~Ls~N-~i~~i~~~~--------f~~l~~L~~L~Ls~N~i~~~i~~~~- 74 (350)
T 4ay9_X 12 RVFLCQE-SKVTEI-PSDL-----PRNAIELRFVLT-KLRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADV- 74 (350)
T ss_dssp TEEEEES-TTCCSC-CTTC-----CTTCSEEEEESC-CCSEECTTS--------STTCTTCCEEEEECCTTCCEECTTS-
T ss_pred CEEEecC-CCCCcc-CcCc-----CCCCCEEEccCC-cCCCcCHHH--------HcCCCCCCEEECcCCCCCCccChhH-
Confidence 4555554 445555 4322 235778888877 577766542 4567788888887653334455443
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccccccc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~~~~~ 165 (388)
+..+++|+++...++.++..+++..+ ..+++|++|++++|.+ ..++.. ...++..+++.++..+. .
T Consensus 75 -f~~L~~l~~~l~~~~N~l~~l~~~~f-----~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~l~~l~l~~~~~i~-~ 143 (350)
T 4ay9_X 75 -FSNLPKLHEIRIEKANNLLYINPEAF-----QNLPNLQYLLISNTGI----KHLPDVHKIHSLQKVLLDIQDNINIH-T 143 (350)
T ss_dssp -BCSCTTCCEEEEEEETTCCEECTTSB-----CCCTTCCEEEEEEECC----SSCCCCTTCCBSSCEEEEEESCTTCC-E
T ss_pred -hhcchhhhhhhcccCCcccccCchhh-----hhcccccccccccccc----ccCCchhhcccchhhhhhhccccccc-c
Confidence 45567766665555557777766655 5777788888877766 333322 12344555554443333 1
Q ss_pred ccchhHhhcC-CCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC
Q 036801 166 LSLDDFLQRF-HTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS 244 (388)
Q Consensus 166 ~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 244 (388)
++...+..+ ..++.|++..|.+ + .++ ...-...+|++|.+.++..++.++..
T Consensus 144 -l~~~~f~~~~~~l~~L~L~~N~i---~-~i~----------------------~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 144 -IERNSFVGLSFESVILWLNKNGI---Q-EIH----------------------NSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp -ECTTSSTTSBSSCEEEECCSSCC---C-EEC----------------------TTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred -ccccchhhcchhhhhhccccccc---c-CCC----------------------hhhccccchhHHhhccCCcccCCCHH
Confidence 222222222 2455555544555 2 122 11112345666666666566666543
Q ss_pred -CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeecccccccccc
Q 036801 245 -STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIV 292 (388)
Q Consensus 245 -~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 292 (388)
+..+++|+.|+++++ .+..++.. .+.+|+.|.+.+++.++.+.
T Consensus 197 ~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 197 VFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCC
T ss_pred HhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCC
Confidence 355666666666643 45555542 34555566555555555443
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=2e-14 Score=130.01 Aligned_cols=204 Identities=18% Similarity=0.181 Sum_probs=130.0
Q ss_pred ccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccc
Q 036801 122 VFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV 201 (388)
Q Consensus 122 ~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 201 (388)
.+++++++++.++.+ ..+|.+..++++.|+++++.... ++...+..+++|+.|++..+.+ +..
T Consensus 8 ~l~~l~~l~~~~~~l----~~ip~~~~~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~------- 70 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL----TALPPDLPKDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAEL---TKL------- 70 (290)
T ss_dssp CSTTCCEEECTTSCC----SSCCSCCCTTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCC---CEE-------
T ss_pred ccCCccEEECCCCCC----CcCCCCCCCCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCcc---Ccc-------
Confidence 445555555555444 44555555566666666654322 3333566777888888855555 221
Q ss_pred ccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEe
Q 036801 202 IIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMK 281 (388)
Q Consensus 202 ~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 281 (388)
.....+++|+.|+++++ .++.+|..+..+++|+.|+++++ .+..++.. .+..+++|++|+
T Consensus 71 -----------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~ 130 (290)
T 1p9a_G 71 -----------------QVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELY 130 (290)
T ss_dssp -----------------ECCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEE
T ss_pred -----------------cCCCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEE
Confidence 11245677888888776 45667666677788888888754 56666543 234677888888
Q ss_pred eccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCC
Q 036801 282 IESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTP 361 (388)
Q Consensus 282 l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 361 (388)
++++ .++.+.... +..+++|+.|++.++ .++.++... +..+++|++|++++ +.++.+|.++...+
T Consensus 131 L~~N-~l~~~~~~~-----------~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~-N~l~~ip~~~~~~~ 195 (290)
T 1p9a_G 131 LKGN-ELKTLPPGL-----------LTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQE-NSLYTIPKGFFGSH 195 (290)
T ss_dssp CTTS-CCCCCCTTT-----------TTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred CCCC-CCCccChhh-----------cccccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCC-CcCCccChhhcccc
Confidence 8654 344443211 123578888888775 577776654 35678888888887 46778888887778
Q ss_pred CcceEEEeccCCccccccc
Q 036801 362 MLHKVQLNMWDEACWAWKE 380 (388)
Q Consensus 362 ~L~~l~l~~~~~~~~~~~~ 380 (388)
.|+.++++ ++.|.+..
T Consensus 196 ~L~~l~L~---~Np~~C~c 211 (290)
T 1p9a_G 196 LLPFAFLH---GNPWLCNC 211 (290)
T ss_dssp CCSEEECC---SCCBCCSG
T ss_pred cCCeEEeC---CCCccCcC
Confidence 88888888 66666544
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=2.8e-14 Score=128.74 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=123.8
Q ss_pred CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHh
Q 036801 93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFL 172 (388)
Q Consensus 93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 172 (388)
.++|++|+++++ .++.++...+ ..+++|++|++++|.+. .+..-....+++|++|+++++..+. . ++...+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~-----~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~-~-~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASF-----RACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLR-S-VDPATF 101 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTT-----TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCC-C-CCTTTT
T ss_pred CCCceEEEeeCC-cCCccCHHHc-----ccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCcc-c-cCHHHh
Confidence 455666666555 4444444333 35556666666655441 1111112335566666666654333 2 323367
Q ss_pred hcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCc
Q 036801 173 QRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNL 251 (388)
Q Consensus 173 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L 251 (388)
..+++|+.|++..+.+ +...+ ..+..+++|++|++++|. ++.+++ .+..+++|
T Consensus 102 ~~l~~L~~L~l~~n~l---~~~~~----------------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGL---QELGP----------------------GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNL 155 (285)
T ss_dssp TTCTTCCEEECTTSCC---CCCCT----------------------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cCCcCCCEEECCCCcC---CEECH----------------------hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCc
Confidence 7788999999955566 32212 556678899999998874 455544 36778899
Q ss_pred CEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCc
Q 036801 252 TTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGY 331 (388)
Q Consensus 252 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 331 (388)
++|+++++ .+..++... ...+++|++|+++++. ++.+.... ...+++|+.|+++++ .+..++...
T Consensus 156 ~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~~~~~~ 220 (285)
T 1ozn_A 156 THLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHA-----------FRDLGRLMTLYLFAN-NLSALPTEA 220 (285)
T ss_dssp CEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTT-----------TTTCTTCCEEECCSS-CCSCCCHHH
T ss_pred cEEECCCC-cccccCHHH-hcCccccCEEECCCCc-ccccCHhH-----------ccCcccccEeeCCCC-cCCcCCHHH
Confidence 99999875 666666542 3467888999887653 44332111 123578888888886 455555432
Q ss_pred ccccCCCcceEeccCCc
Q 036801 332 CALNFPSLERLLVDDCT 348 (388)
Q Consensus 332 ~~~~~~~L~~L~l~~c~ 348 (388)
+..+++|+.|++++++
T Consensus 221 -~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 221 -LAPLRALQYLRLNDNP 236 (285)
T ss_dssp -HTTCTTCCEEECCSSC
T ss_pred -cccCcccCEEeccCCC
Confidence 2567888888888764
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.5e-14 Score=128.43 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=122.3
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
+|++|++++| .+..++... +..+++|++|++.++ .+..++... +..+++|++|+++++ .+..++...
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYS--------FFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGN-PIQSLALGA 95 (276)
T ss_dssp TCCEEECTTC-CCCEECTTT--------TTTCTTCSEEECTTC-CCCEECTTT--TTTCTTCCEEECTTC-CCCEECTTT
T ss_pred CccEEECCCC-cccccCHhH--------hccccCCcEEECCCC-cCCccCHHH--ccCCcCCCEEECCCC-ccCccChhh
Confidence 5778888777 466555421 556777888888764 566666554 556778888888777 555555444
Q ss_pred cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCcee
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEK 194 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 194 (388)
+ ..+++|++|++.+|.+. .+...+...+++|++|+++++.... ..++. .+..+++|+.|++..+.+ +..
T Consensus 96 ~-----~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~l~~-~~~~l~~L~~L~Ls~N~l---~~~ 164 (276)
T 2z62_A 96 F-----SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKLPE-YFSNLTNLEHLDLSSNKI---QSI 164 (276)
T ss_dssp T-----TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCC-CCCCG-GGGGCTTCCEEECCSSCC---CEE
T ss_pred h-----cCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccce-ecCch-hhccCCCCCEEECCCCCC---CcC
Confidence 4 56778888888777652 1122234557788888887765332 11233 567788888888865666 332
Q ss_pred ecCccccccceeeeeeccceeccccCCCCCCccc----eEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801 195 VENGVEVIIREAYNCYDMKYILKHESSSIMDNLV----ILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270 (388)
Q Consensus 195 ~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~----~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 270 (388)
.+ ..+..+++|+ +|+++++ .++.+++......+|+.|+++++ .+..++.. .
T Consensus 165 ~~----------------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~ 219 (276)
T 2z62_A 165 YC----------------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDG-I 219 (276)
T ss_dssp CG----------------------GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTT-T
T ss_pred CH----------------------HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHh-H
Confidence 21 2222223333 6777665 34555554444557777777754 46555543 2
Q ss_pred hhccCccCEEeeccc
Q 036801 271 AKTLVRLREMKIESC 285 (388)
Q Consensus 271 ~~~~~~L~~L~l~~c 285 (388)
...+++|++|++++.
T Consensus 220 ~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 220 FDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTCCSCCEEECCSS
T ss_pred hcccccccEEEccCC
Confidence 346777777777643
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=3.5e-14 Score=128.48 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=123.4
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+++++++++++++ ++++.+ |..+ .++++.|++++| .+..++... +..+++|++|++.++ .+..
T Consensus 7 ~~l~~l~~l~~~~-~~l~~i-p~~~-----~~~l~~L~L~~N-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~ 69 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTAL-PPDL-----PKDTTILHLSEN-LLYTFSLAT--------LMPYTRLTQLNLDRA-ELTK 69 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSC-CSCC-----CTTCCEEECTTS-CCSEEEGGG--------GTTCTTCCEEECTTS-CCCE
T ss_pred cccCCccEEECCC-CCCCcC-CCCC-----CCCCCEEEcCCC-cCCccCHHH--------hhcCCCCCEEECCCC-ccCc
Confidence 4677788888876 456655 3322 346888888887 455554331 556788888888764 5666
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFV 159 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~ 159 (388)
++.. ..+++|++|+++++ .+..++... ..+++|++|++++|.+ ..++. ..+++|+.|+++++
T Consensus 70 ~~~~----~~l~~L~~L~Ls~N-~l~~l~~~~------~~l~~L~~L~l~~N~l----~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 70 LQVD----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp EECC----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCC----CCCCSSTTTTCTTCCEEECTTS
T ss_pred ccCC----CCCCcCCEEECCCC-cCCcCchhh------ccCCCCCEEECCCCcC----cccCHHHHcCCCCCCEEECCCC
Confidence 5433 35788888888877 555555433 4677888888887776 34443 34567777777776
Q ss_pred ccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcccc
Q 036801 160 DELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI 239 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~ 239 (388)
.... ++...+..+++|+.|++..|.+ +. ++ + ..+..+++|+.|+++++ .++
T Consensus 135 ~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~-l~--------------------~-~~~~~l~~L~~L~L~~N-~l~ 185 (290)
T 1p9a_G 135 ELKT---LPPGLLTPTPKLEKLSLANNNL---TE-LP--------------------A-GLLNGLENLDTLLLQEN-SLY 185 (290)
T ss_dssp CCCC---CCTTTTTTCTTCCEEECTTSCC---SC-CC--------------------T-TTTTTCTTCCEEECCSS-CCC
T ss_pred CCCc---cChhhcccccCCCEEECCCCcC---Cc-cC--------------------H-HHhcCcCCCCEEECCCC-cCC
Confidence 4322 3444556677777777755555 22 22 1 33445677777777666 455
Q ss_pred ccCCCCCCCCCcCEEEEecC
Q 036801 240 NLVPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 240 ~l~~~~~~~~~L~~L~l~~c 259 (388)
.+|..+...++|+.+.++++
T Consensus 186 ~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSC
T ss_pred ccChhhcccccCCeEEeCCC
Confidence 66666666667777777654
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=6.3e-15 Score=134.86 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=127.7
Q ss_pred cCCccEEEEeecCccccccccch----hhccCccEeeccccccccccccchhHhhcC-----CCccEEEEEeccCCCCce
Q 036801 123 FPNLEELIVDAKYITTNKFLFSK----DLLCKLKCLDVEFVDELTTILSLDDFLQRF-----HTLKVLQIEGYNYWLPKE 193 (388)
Q Consensus 123 l~~L~~L~i~~~~~~~~~~~lp~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~ 193 (388)
+++|++|++++|.+. ...|. ..+++|++|+++++.... .|. .+..+ ++|++|++..+.+ ..
T Consensus 94 l~~L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~-~~~~l~~~~~~~L~~L~L~~N~l---~~ 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWAT---RDA-WLAELQQWLKPGLKVLSIAQAHS---LN 163 (312)
T ss_dssp TSCCCEEEEEEEBCB---SCCCCCSSSCCSCCCSEEEEESCBCSS---SSS-HHHHHHTTCCTTCCEEEEESCSC---CC
T ss_pred cCCccEEEccCCccc---chhHHHHHHhcCCCccEEEccCCCCcc---hhH-HHHHHHHhhcCCCcEEEeeCCCC---cc
Confidence 455555555555442 12222 335566666666554322 232 34444 8899999976776 33
Q ss_pred eecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc--cCCCC--CCCCCcCEEEEecCCCceeecch-
Q 036801 194 KVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN--LVPSS--TSFQNLTTLEISHCNGLKNVLTF- 268 (388)
Q Consensus 194 ~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~~~~~- 268 (388)
..+ ..+..+++|+.|++++|...+. ++... ..+++|++|+++++ .+..++..
T Consensus 164 ~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 220 (312)
T 1wwl_A 164 FSC----------------------EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVC 220 (312)
T ss_dssp CCT----------------------TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHH
T ss_pred chH----------------------HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHH
Confidence 222 5566788999999998864433 22233 67889999999875 55543221
Q ss_pred -hhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCC
Q 036801 269 -LIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDC 347 (388)
Q Consensus 269 -~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c 347 (388)
.+...+++|++|+++++. ++....... ...+++|+.|+++++ .+..++... . ++|++|+++++
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~----------~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNS-LRDAAGAPS----------CDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYN 284 (312)
T ss_dssp HHHHHTTCCCSEEECTTSC-CCSSCCCSC----------CCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSS
T ss_pred HHHHhcCCCCCEEECCCCc-CCcccchhh----------hhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCC
Confidence 233467899999997653 444321110 123589999999997 577777755 2 89999999985
Q ss_pred cccccCCCCCcCCCCcceEEEeccCCcccc
Q 036801 348 TNMEIFSRGELSTPMLHKVQLNMWDEACWA 377 (388)
Q Consensus 348 ~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 377 (388)
.++.+|. +..+++|+.++++ ++.+.
T Consensus 285 -~l~~~p~-~~~l~~L~~L~L~---~N~l~ 309 (312)
T 1wwl_A 285 -RLDRNPS-PDELPQVGNLSLK---GNPFL 309 (312)
T ss_dssp -CCCSCCC-TTTSCEEEEEECT---TCTTT
T ss_pred -CCCCChh-HhhCCCCCEEecc---CCCCC
Confidence 7888877 6688999999998 55544
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.3e-13 Score=128.18 Aligned_cols=221 Identities=17% Similarity=0.121 Sum_probs=144.6
Q ss_pred ccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee-cCccccccccc
Q 036801 66 FPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA-KYITTNKFLFS 144 (388)
Q Consensus 66 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~-~~~~~~~~~lp 144 (388)
.+++++|++++ ++++.++.+. +..+++|++|++++|..++.++...+ ..++++.++.+.+ +.+ ..++
T Consensus 29 ~~~l~~L~Ls~-N~i~~i~~~~--f~~l~~L~~L~Ls~N~i~~~i~~~~f-----~~L~~l~~~l~~~~N~l----~~l~ 96 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLHEIRIEKANNL----LYIN 96 (350)
T ss_dssp CTTCSEEEEES-CCCSEECTTS--STTCTTCCEEEEECCTTCCEECTTSB-----CSCTTCCEEEEEEETTC----CEEC
T ss_pred CCCCCEEEccC-CcCCCcCHHH--HcCCCCCCEEECcCCCCCCccChhHh-----hcchhhhhhhcccCCcc----cccC
Confidence 35688888876 4677777664 56788888888888865666666555 5677776655544 444 3343
Q ss_pred h---hhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCCCCceeecCccccccceeeeeeccceeccccC
Q 036801 145 K---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHES 220 (388)
Q Consensus 145 ~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~ 220 (388)
. ..+++|++|+++++.... .+...+....++..+++ +++.+ . .++ . ..
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~l~~l~l~~~~~i---~-~l~--------------------~-~~ 148 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKH---LPDVHKIHSLQKVLLDIQDNINI---H-TIE--------------------R-NS 148 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSS---CCCCTTCCBSSCEEEEEESCTTC---C-EEC--------------------T-TS
T ss_pred chhhhhcccccccccccccccc---CCchhhcccchhhhhhhcccccc---c-ccc--------------------c-cc
Confidence 3 235677777777654322 23223334455666666 44555 2 222 2 33
Q ss_pred CCCC-CccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCC
Q 036801 221 SSIM-DNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDD 299 (388)
Q Consensus 221 l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 299 (388)
+..+ ..++.|+++++ .++.++......++|+.+.+.+++.+..++.. +...+++|++|+++++ .++.+...
T Consensus 149 f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~~----- 220 (350)
T 4ay9_X 149 FVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPSY----- 220 (350)
T ss_dssp STTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCSS-----
T ss_pred hhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccChh-----
Confidence 3333 46888888876 56777776666778888888888888888765 3357888999999665 56655421
Q ss_pred ccccccceecccccceeecccccccceeccCcccccCCCcceEeccC
Q 036801 300 HDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDD 346 (388)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~ 346 (388)
.|.+|+.|.+.++.+++.+|.- ..+++|+.+++.+
T Consensus 221 ---------~~~~L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ---------GLENLKKLRARSTYNLKKLPTL---EKLVALMEASLTY 255 (350)
T ss_dssp ---------SCTTCCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred ---------hhccchHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence 3678888888888888888752 4788888888864
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=5.6e-14 Score=125.76 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
+..+++|+.|++++| .++.+++ .+..+++|++|+++++ .+..++.. ....+++|+.|+++++
T Consensus 153 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 153 FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCC
Confidence 344455555555554 2333332 2344555555555543 34444332 1234555666655443
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.5e-15 Score=140.41 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=145.0
Q ss_pred cccEEeEecCCCCcccccccccccccc--cccceeeccccccccEeeecccccccccccccccccceEecccccccccc-
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSF--VRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF- 83 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~- 83 (388)
.++.++++++. +. +..++ .+ ++++.|++.++. +...+.. +..+++|++|++.++. +...
T Consensus 48 ~~~~l~l~~~~-~~---~~~~~---~~~~~~l~~L~l~~n~-l~~~~~~---------~~~~~~L~~L~L~~~~-l~~~~ 109 (336)
T 2ast_B 48 LWQTLDLTGKN-LH---PDVTG---RLLSQGVIAFRCPRSF-MDQPLAE---------HFSPFRVQHMDLSNSV-IEVST 109 (336)
T ss_dssp TSSEEECTTCB-CC---HHHHH---HHHHTTCSEEECTTCE-ECSCCCS---------CCCCBCCCEEECTTCE-ECHHH
T ss_pred hheeecccccc-CC---HHHHH---hhhhccceEEEcCCcc-ccccchh---------hccCCCCCEEEccCCC-cCHHH
Confidence 37788888753 32 34455 56 789999998873 4433332 4568899999998764 5432
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeecccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDE 161 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~ 161 (388)
.+.. +..+++|++|++++|. +.......+ ..+++|++|++++|...+. ..++ ...+++|++|++++|..
T Consensus 110 ~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 110 LHGI--LSQCSKLQNLSLEGLR-LSDPIVNTL-----AKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp HHHH--HTTBCCCSEEECTTCB-CCHHHHHHH-----TTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHH--HhhCCCCCEEeCcCcc-cCHHHHHHH-----hcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCC
Confidence 2221 4568999999998883 442222222 4688999999998842211 1122 24588999999998854
Q ss_pred ccccccchhHhhcCC-CccEEEE-Eec-cCCCCc-eeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcc
Q 036801 162 LTTILSLDDFLQRFH-TLKVLQI-EGY-NYWLPK-EKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHH 237 (388)
Q Consensus 162 ~~~~~~~~~~~~~l~-~L~~L~l-~~~-~l~~~~-~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~ 237 (388)
++ .......+..++ +|++|++ +|. .+ + ..++ ..+..+++|+.|++++|..
T Consensus 181 l~-~~~~~~~~~~l~~~L~~L~l~~~~~~~---~~~~l~----------------------~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 181 FT-EKHVQVAVAHVSETITQLNLSGYRKNL---QKSDLS----------------------TLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CC-HHHHHHHHHHSCTTCCEEECCSCGGGS---CHHHHH----------------------HHHHHCTTCSEEECTTCTT
T ss_pred cC-hHHHHHHHHhcccCCCEEEeCCCcccC---CHHHHH----------------------HHHhhCCCCCEEeCCCCCc
Confidence 54 322233677888 9999999 443 34 2 1111 2334578999999999875
Q ss_pred cc-ccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 238 LI-NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 238 l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
++ ..+..+..+++|++|++++|..+.+.... ....+++|++|++.+|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 54 44456677899999999988644433222 2346889999999887
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=3.3e-14 Score=127.67 Aligned_cols=199 Identities=18% Similarity=0.153 Sum_probs=130.5
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+|++|+++++ .++.+++..++ ++++|++|++++| .+..++... +..+++|++|++.++ .+..++..
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~ 94 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFF---SFPELQVLDLSRC-EIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALG 94 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTT---TCTTCSEEECTTC-CCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTT
T ss_pred CccEEECCCC-cccccCHhHhc---cccCCcEEECCCC-cCCccCHHH--------ccCCcCCCEEECCCC-ccCccChh
Confidence 5888888875 46666565677 7888888888887 566655431 556888888888874 57776655
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc--hhhccCccEeeccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS--KDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp--~~~l~~L~~L~l~~~~~~~~ 164 (388)
. +..+++|++|+++++ .+..++...+ ..+++|++|++++|.+.. ..+| ...+++|++|+++++....
T Consensus 95 ~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~l~~- 163 (276)
T 2z62_A 95 A--FSGLSSLQKLVAVET-NLASLENFPI-----GHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQS- 163 (276)
T ss_dssp T--TTTCTTCCEEECTTS-CCCCSTTCCC-----TTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCE-
T ss_pred h--hcCCccccEEECCCC-CccccCchhc-----ccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCCCCCCc-
Confidence 4 667888888888877 4555544333 577888888888877621 1133 2457788888888875433
Q ss_pred cccchhHhhcCCCcc----EEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc
Q 036801 165 ILSLDDFLQRFHTLK----VLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~----~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
.+...+..+++|+ .|++..+.+ +. ++. ..+ ...+|+.|++++|. ++.
T Consensus 164 --~~~~~~~~l~~L~~l~l~L~ls~n~l---~~-~~~---------------------~~~-~~~~L~~L~L~~n~-l~~ 214 (276)
T 2z62_A 164 --IYCTDLRVLHQMPLLNLSLDLSLNPM---NF-IQP---------------------GAF-KEIRLKELALDTNQ-LKS 214 (276)
T ss_dssp --ECGGGGHHHHTCTTCCEEEECCSSCC---CE-ECT---------------------TSS-CSCCEEEEECCSSC-CSC
T ss_pred --CCHHHhhhhhhccccceeeecCCCcc---cc-cCc---------------------ccc-CCCcccEEECCCCc-eee
Confidence 2333445555555 667755666 22 221 122 23478888888874 566
Q ss_pred cCCC-CCCCCCcCEEEEecC
Q 036801 241 LVPS-STSFQNLTTLEISHC 259 (388)
Q Consensus 241 l~~~-~~~~~~L~~L~l~~c 259 (388)
++.. +..+++|+.|+++++
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSS
T ss_pred cCHhHhcccccccEEEccCC
Confidence 6554 467888888888764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.8e-14 Score=126.86 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=76.9
Q ss_pred ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801 8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD 87 (388)
Q Consensus 8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 87 (388)
.+++++++ +.++.+ |..+ .+++++|++++| .+..++... +..+++|++|++.++ .+..++...
T Consensus 18 ~~~l~~~~-~~l~~i-p~~~-----~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~i~~~~ 80 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAI-PSNI-----PADTKKLDLQSN-KLSSLPSKA--------FHRLTKLRLLYLNDN-KLQTLPAGI 80 (270)
T ss_dssp TTEEECTT-SCCSSC-CSCC-----CTTCSEEECCSS-CCSCCCTTS--------SSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCEEEccC-CCCCcc-CCCC-----CCCCCEEECcCC-CCCeeCHHH--------hcCCCCCCEEECCCC-ccCeeChhh
Confidence 45566655 334443 3221 234666666665 344433321 445666666666653 455555443
Q ss_pred cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccc
Q 036801 88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~ 164 (388)
+..+++|++|+++++ .+..++...+ ..+++|++|++++|.+ ..++. ..+++|++|+++++....
T Consensus 81 --~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~- 147 (270)
T 2o6q_A 81 --FKELKNLETLWVTDN-KLQALPIGVF-----DQLVNLAELRLDRNQL----KSLPPRVFDSLTKLTYLSLGYNELQS- 147 (270)
T ss_dssp --TSSCTTCCEEECCSS-CCCCCCTTTT-----TTCSSCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred --hcCCCCCCEEECCCC-cCCcCCHhHc-----ccccCCCEEECCCCcc----CeeCHHHhCcCcCCCEEECCCCcCCc-
Confidence 345666666666665 4444444433 4556666666666554 23332 335566666666654222
Q ss_pred cccchhHhhcCCCccEEEEEeccC
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
++...+..+++|+.|++..+.+
T Consensus 148 --~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 148 --LPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCC
T ss_pred --cCHhHccCCcccceeEecCCcC
Confidence 3333455566666666644444
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=5.6e-17 Score=156.53 Aligned_cols=142 Identities=17% Similarity=0.084 Sum_probs=70.4
Q ss_pred cCCCcccEEeEecCCCCccc----ccccccccccccccceeeccccccccEeeeccccccccccccccc----ccceEec
Q 036801 3 CGIQNLTHLTFYNCMNLRCL----FSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP----RLQYLKM 74 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~----~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l 74 (388)
..+++|++|++++|. ++.. .+..+. .+++|++|++++|. +.+...... ...++ +|++|++
T Consensus 25 ~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~---~~~~L~~L~Ls~n~-l~~~~~~~l-------~~~l~~~~~~L~~L~L 92 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCG-LTEARCKDISSALR---VNPALAELNLRSNE-LGDVGVHCV-------LQGLQTPSCKIQKLSL 92 (461)
T ss_dssp HHHTTCSEEEEESSC-CCHHHHHHHHHHHH---TCTTCCEEECTTCC-CHHHHHHHH-------HHTTCSTTCCCCEEEC
T ss_pred hhcCCccEEEccCCC-CCHHHHHHHHHHHH---hCCCcCEEeCCCCc-CChHHHHHH-------HHHHhhCCCceeEEEc
Confidence 457888999998875 4421 234445 67889999998873 333111000 11233 5778888
Q ss_pred cccccccccc----CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccc-cccch--hh
Q 036801 75 YDLEKLTSFS----TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FLFSK--DL 147 (388)
Q Consensus 75 ~~~~~l~~~~----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~lp~--~~ 147 (388)
.++ .+.... +.. +..+++|++|++++|. +.......+........++|++|++++|.+.... ..++. ..
T Consensus 93 ~~n-~i~~~~~~~l~~~--l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 93 QNC-CLTGAGCGVLSST--LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168 (461)
T ss_dssp TTS-CCBGGGHHHHHHH--TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHH--HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence 765 344211 111 4457777777777763 3221111000000112345666666665542110 01111 12
Q ss_pred ccCccEeeccccc
Q 036801 148 LCKLKCLDVEFVD 160 (388)
Q Consensus 148 l~~L~~L~l~~~~ 160 (388)
+++|++|+++++.
T Consensus 169 ~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 169 KPDFKELTVSNND 181 (461)
T ss_dssp CTTCCEEECCSSB
T ss_pred CCCCCEEECcCCC
Confidence 4566666666554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=1.2e-14 Score=130.24 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=98.8
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|++.++ .+..++. +..+++|++|++.++ .+..++ . +..+++|++|++++| .++.++
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~----------l~~l~~L~~L~l~~n-~l~~~~--~--l~~l~~L~~L~L~~n-~l~~~~ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQG----------IQYLPNVRYLALGGN-KLHDIS--A--LKELTNLTYLILTGN-QLQSLP 101 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTT----------GGGCTTCCEEECTTS-CCCCCG--G--GTTCTTCCEEECTTS-CCCCCC
T ss_pred cccceeeeeeCCC-Ccccccc----------cccCCCCcEEECCCC-CCCCch--h--hcCCCCCCEEECCCC-ccCccC
Confidence 5666666666665 2333221 445666666666653 344432 1 345666666666666 455454
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
...+ ..+++|++|++++|.+ ..++. ..+++|++|+++++.... .+...+..+++|+.|++..+.+
T Consensus 102 ~~~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 102 NGVF-----DKLTNLKELVLVENQL----QSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp TTTT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred hhHh-----cCCcCCCEEECCCCcC----CccCHHHhccCCCCCEEECCCCccCc---cCHHHhccCccCCEEECCCCCc
Confidence 4433 4566667777666655 33332 345677777776663222 3333556677777777755555
Q ss_pred CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecC
Q 036801 189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHC 259 (388)
Q Consensus 189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 259 (388)
+.. + + ..+..+++|+.|++++|. ++.+++ .+..+++|+.|+++++
T Consensus 170 ---~~~-~--------------------~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 170 ---QSL-P--------------------E-GVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ---CCC-C--------------------T-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ---Ccc-C--------------------H-HHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 221 1 1 334566777788777764 444443 3467777888877765
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=5.6e-15 Score=135.23 Aligned_cols=257 Identities=16% Similarity=0.104 Sum_probs=161.0
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
+..++|++|.++++.. . .|..+. .. |++|+++++ .+..................+++|++|++.++ ++.+
T Consensus 40 ~~~~~L~~l~l~~n~l--~-~p~~~~---~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~ 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--A-DLGQFT---DI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENL-EVTG 109 (312)
T ss_dssp EEEEECTTHHHHCCTT--C-CCHHHH---HH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBS
T ss_pred ccCCCceeEeeccccc--c-cHHHHH---HH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccc
Confidence 3456788888887654 3 466555 33 999999997 45443222110000000115889999999985 5765
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCcccccc-----CCccEEEEeecCccccccccch---hhccCccEe
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVF-----PNLEELIVDAKYITTNKFLFSK---DLLCKLKCL 154 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-----~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L 154 (388)
..+..+....+++|++|+++++ .++..+... ..+ ++|++|++++|.+ ..++. +.+++|++|
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~~~~~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNV-SWATRDAWL------AELQQWLKPGLKVLSIAQAHS----LNFSCEQVRVFPALSTL 178 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESC-BCSSSSSHH------HHHHTTCCTTCCEEEEESCSC----CCCCTTTCCCCSSCCEE
T ss_pred hhHHHHHHhcCCCccEEEccCC-CCcchhHHH------HHHHHhhcCCCcEEEeeCCCC----ccchHHHhccCCCCCEE
Confidence 3333201267999999999998 555553322 344 8999999999987 44443 358899999
Q ss_pred eccccccccccc-cch-hHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEe
Q 036801 155 DVEFVDELTTIL-SLD-DFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRV 232 (388)
Q Consensus 155 ~l~~~~~~~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l 232 (388)
+++++.... .. .+. ..+..+++|+.|++..+.+ +. ++. ++. ..+..+++|+.|++
T Consensus 179 ~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l---~~-~~~-----------------~~~-~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 179 DLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGM---ET-PSG-----------------VCS-ALAAARVQLQGLDL 235 (312)
T ss_dssp ECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCC---CC-HHH-----------------HHH-HHHHTTCCCSEEEC
T ss_pred ECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcC---cc-hHH-----------------HHH-HHHhcCCCCCEEEC
Confidence 999986432 11 121 1227889999999966676 31 110 000 22235689999999
Q ss_pred cCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccceeccc
Q 036801 233 SSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFS 311 (388)
Q Consensus 233 ~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 311 (388)
++|......+ .....+++|++|+++++ .+..++... .++|++|+++++ .++.+.. ...++
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N-~l~~~p~-------------~~~l~ 296 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYN-RLDRNPS-------------PDELP 296 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSS-CCCSCCC-------------TTTSC
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhc----cCCceEEECCCC-CCCCChh-------------HhhCC
Confidence 9884333232 34456789999999875 566666531 278999999665 4555522 11468
Q ss_pred ccceeeccccc
Q 036801 312 KLNELRLLNLE 322 (388)
Q Consensus 312 ~L~~L~l~~c~ 322 (388)
+|+.|++.+.+
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 99999998853
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.3e-15 Score=139.02 Aligned_cols=250 Identities=15% Similarity=0.163 Sum_probs=160.9
Q ss_pred ccceeeccccccccEeeecccccccccccccc--cccceEecccccccccccCCCcccccCCCccEEEeecCCCceE--e
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF--PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMV--K 110 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~ 110 (388)
.++.++++++. +. +.. +..+ ++++.|++.++ .+...... ...+++|++|++++|. +.. +
T Consensus 48 ~~~~l~l~~~~-~~--~~~---------~~~~~~~~l~~L~l~~n-~l~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDV---------TGRLLSQGVIAFRCPRS-FMDQPLAE---HFSPFRVQHMDLSNSV-IEVSTL 110 (336)
T ss_dssp TSSEEECTTCB-CC--HHH---------HHHHHHTTCSEEECTTC-EECSCCCS---CCCCBCCCEEECTTCE-ECHHHH
T ss_pred hheeecccccc-CC--HHH---------HHhhhhccceEEEcCCc-cccccchh---hccCCCCCEEEccCCC-cCHHHH
Confidence 47888888763 22 111 3445 88999999874 56665544 4468999999999884 432 2
Q ss_pred cccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE-EeccCC
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI-EGYNYW 189 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~l~ 189 (388)
+... ..+++|++|++++|.+... ..-....+++|++|++++|..++ .......+..+++|+.|++ +|..+
T Consensus 111 ~~~~------~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~~~l- 181 (336)
T 2ast_B 111 HGIL------SQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRLDELNLSWCFDF- 181 (336)
T ss_dssp HHHH------TTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTCCEEECCCCTTC-
T ss_pred HHHH------hhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCCCEEcCCCCCCc-
Confidence 2222 5789999999999876311 11122348899999999986555 3222336788999999999 54366
Q ss_pred CCcee-ecCccccccceeeeeeccceeccccCCCCCC-ccceEEecCCc-cc--cccCCCCCCCCCcCEEEEecCCCcee
Q 036801 190 LPKEK-VENGVEVIIREAYNCYDMKYILKHESSSIMD-NLVILRVSSCH-HL--INLVPSSTSFQNLTTLEISHCNGLKN 264 (388)
Q Consensus 190 ~~~~~-~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~-~L~~L~l~~c~-~l--~~l~~~~~~~~~L~~L~l~~c~~l~~ 264 (388)
+.. ++ ..+..++ +|++|++++|. .+ ..++..+..+++|+.|++++|..+.+
T Consensus 182 --~~~~~~----------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 182 --TEKHVQ----------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp --CHHHHH----------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred --ChHHHH----------------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 321 11 3344667 99999999985 34 33445556789999999998875654
Q ss_pred ecchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccC-CCcceEe
Q 036801 265 VLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNF-PSLERLL 343 (388)
Q Consensus 265 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~-~~L~~L~ 343 (388)
.... .+..+++|++|++++|..+....... ...+++|+.|++.+| ++... +..+ ..++.|+
T Consensus 238 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-----------l~~~~~L~~L~l~~~-----i~~~~-~~~l~~~l~~L~ 299 (336)
T 2ast_B 238 DCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE-----------LGEIPTLKTLQVFGI-----VPDGT-LQLLKEALPHLQ 299 (336)
T ss_dssp GGGG-GGGGCTTCCEEECTTCTTCCGGGGGG-----------GGGCTTCCEEECTTS-----SCTTC-HHHHHHHSTTSE
T ss_pred HHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH-----------HhcCCCCCEEeccCc-----cCHHH-HHHHHhhCcceE
Confidence 3333 23577999999999886443221100 224789999999988 22221 1122 3356666
Q ss_pred ccCCcccccC
Q 036801 344 VDDCTNMEIF 353 (388)
Q Consensus 344 l~~c~~l~~l 353 (388)
+. |+.++..
T Consensus 300 l~-~n~l~~~ 308 (336)
T 2ast_B 300 IN-CSHFTTI 308 (336)
T ss_dssp ES-CCCSCCT
T ss_pred Ee-cccCccc
Confidence 75 4566553
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=8e-14 Score=127.23 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=99.5
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|++.+| .+..++ . +..+++|++|+++++ .+.+++. +..+++|++|++++| .+..++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~---------~~~l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n-~l~~~~ 101 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-G---------VQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGN-PLKNVS 101 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-T---------GGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSC-CCSCCG
T ss_pred HcCCcCEEEeeCC-CccCch-h---------hhccCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCC-cCCCch
Confidence 4556666666665 344332 1 345566666666553 3444432 224566666666665 344332
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL 190 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 190 (388)
. + ..+++|++|++++|.+. .++ ...+++|++|+++++.... .+ .+..+++|+.|++..+.+
T Consensus 102 ~--~-----~~l~~L~~L~l~~n~l~----~~~~l~~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l-- 163 (308)
T 1h6u_A 102 A--I-----AGLQSIKTLDLTSTQIT----DVTPLAGLSNLQVLYLDLNQITN---IS--PLAGLTNLQYLSIGNAQV-- 163 (308)
T ss_dssp G--G-----TTCTTCCEEECTTSCCC----CCGGGTTCTTCCEEECCSSCCCC---CG--GGGGCTTCCEEECCSSCC--
T ss_pred h--h-----cCCCCCCEEECCCCCCC----CchhhcCCCCCCEEECCCCccCc---Cc--cccCCCCccEEEccCCcC--
Confidence 1 1 35566666666665542 222 3445666666666654322 22 155666777777644454
Q ss_pred CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhh
Q 036801 191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLI 270 (388)
Q Consensus 191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 270 (388)
+. + ..+..+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++.
T Consensus 164 -~~-~-----------------------~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~--- 212 (308)
T 1h6u_A 164 -SD-L-----------------------TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP--- 212 (308)
T ss_dssp -CC-C-----------------------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---
T ss_pred -CC-C-----------------------hhhcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCcccc---
Confidence 21 1 12445566777777665 3444433 556667777777654 4544442
Q ss_pred hhccCccCEEeeccc
Q 036801 271 AKTLVRLREMKIESC 285 (388)
Q Consensus 271 ~~~~~~L~~L~l~~c 285 (388)
...+++|+.|+++++
T Consensus 213 l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEEEEEE
T ss_pred ccCCCCCCEEEccCC
Confidence 245667777777554
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=5.5e-16 Score=149.60 Aligned_cols=329 Identities=15% Similarity=0.129 Sum_probs=189.5
Q ss_pred CCcccEEeEecCCCCccccccc-ccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSS-TVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.++|++|+++++. ++...... +. .+++|++|++++|. +....... ....+..+++|++|+++++ .+.+.
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~~~----l~~~l~~~~~L~~L~Ls~n-~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLP---LLQQCQVVRLDDCG-LTEARCKD----ISSALRVNPALAELNLRSN-ELGDV 71 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHH---HHTTCSEEEEESSC-CCHHHHHH----HHHHHHTCTTCCEEECTTC-CCHHH
T ss_pred Cccceehhhhhcc-cCchhHHHHHh---hcCCccEEEccCCC-CCHHHHHH----HHHHHHhCCCcCEEeCCCC-cCChH
Confidence 4689999999764 55443333 44 79999999999994 44211000 0011556899999999985 45542
Q ss_pred cCCCcccccCC----CccEEEeecCCCceE-----ecccccCCccccccCCccEEEEeecCcccc-ccccchh---hccC
Q 036801 84 STGDVHMLEFP----SLKELWISRCPGFMV-----KFKRTTNDLTKKVFPNLEELIVDAKYITTN-KFLFSKD---LLCK 150 (388)
Q Consensus 84 ~~~~~~~~~~~----~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~-~~~lp~~---~l~~ 150 (388)
.... ....++ +|++|++++| .+.. ++... ..+++|++|++++|.+... ...+... ..++
T Consensus 72 ~~~~-l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 72 GVHC-VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTL------RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp HHHH-HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHT------TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHHH-HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHH------ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 2211 012244 7999999999 4442 22222 5789999999999886321 1112212 1347
Q ss_pred ccEeeccccccccccc--cchhHhhcCCCccEEEEEeccCCCCceeecCcccc----ccce-eeeee---ccce-----e
Q 036801 151 LKCLDVEFVDELTTIL--SLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV----IIRE-AYNCY---DMKY-----I 215 (388)
Q Consensus 151 L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~-~~l~l---~l~~-----i 215 (388)
|++|++++|..-. .. .....+..+++|+.|++..+.+ +......+.. .... +.+++ .+.. +
T Consensus 144 L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 144 LEKLQLEYCSLSA-ASCEPLASVLRAKPDFKELTVSNNDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp CCEEECTTSCCBG-GGHHHHHHHHHHCTTCCEEECCSSBC---HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred ceEEECCCCCCCH-HHHHHHHHHHhhCCCCCEEECcCCCc---chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 9999999985332 11 1123567789999999955556 3322222211 1112 23333 2222 1
Q ss_pred ccccCCCCCCccceEEecCCcccccc-----CC-CCCCCCCcCEEEEecCCCceeecc---hhhhhccCccCEEeecccc
Q 036801 216 LKHESSSIMDNLVILRVSSCHHLINL-----VP-SSTSFQNLTTLEISHCNGLKNVLT---FLIAKTLVRLREMKIESCA 286 (388)
Q Consensus 216 ~~~~~l~~l~~L~~L~l~~c~~l~~l-----~~-~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~ 286 (388)
+ ..+..+++|++|++++|. +++. .+ ....+++|++|++++| .+.+... ......+++|++|+++++.
T Consensus 220 ~--~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 220 C--GIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp H--HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred H--HHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1 334467888999998874 3321 11 1235788999999876 5554321 1123457889999997663
Q ss_pred ccccccccCCCCCccccccceecccccceeecccccccce-----eccCcccccCCCcceEeccCCcccccC-----CCC
Q 036801 287 MITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLLVDDCTNMEIF-----SRG 356 (388)
Q Consensus 287 ~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~ 356 (388)
++......-.. .-....++|++|++.+|. +.. ++.. +..+++|++|++++| .+... ...
T Consensus 296 -i~~~~~~~l~~------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 296 -LGDEGARLLCE------TLLEPGCQLESLWVKSCS-FTAACCSHFSSV--LAQNRFLLELQISNN-RLEDAGVRELCQG 364 (461)
T ss_dssp -CHHHHHHHHHH------HHTSTTCCCCEEECTTSC-CBGGGHHHHHHH--HHHCSSCCEEECCSS-BCHHHHHHHHHHH
T ss_pred -CchHHHHHHHH------HhccCCccceeeEcCCCC-CchHHHHHHHHH--HhhCCCccEEEccCC-ccccccHHHHHHH
Confidence 43221100000 000123689999999885 333 2222 246799999999987 34321 111
Q ss_pred Cc-CCCCcceEEEec
Q 036801 357 EL-STPMLHKVQLNM 370 (388)
Q Consensus 357 ~~-~~~~L~~l~l~~ 370 (388)
.. ..++|+.+++++
T Consensus 365 l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 365 LGQPGSVLRVLWLAD 379 (461)
T ss_dssp HTSTTCCCCEEECTT
T ss_pred HcCCCCceEEEECCC
Confidence 11 257999999983
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=9.1e-14 Score=124.54 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=154.0
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+..+..+++.++ .+.+... ...+++|+.|++.++ .+..++. +..+++|++|++++| .+..++
T Consensus 17 ~~~~l~~l~l~~~-~~~~~~~----------~~~l~~L~~L~l~~~-~i~~~~~----l~~l~~L~~L~l~~n-~l~~~~ 79 (272)
T 3rfs_A 17 AFAETIKANLKKK-SVTDAVT----------QNELNSIDQIIANNS-DIKSVQG----IQYLPNVRYLALGGN-KLHDIS 79 (272)
T ss_dssp HHHHHHHHHHTCS-CTTSEEC----------HHHHTTCCEEECTTS-CCCCCTT----GGGCTTCCEEECTTS-CCCCCG
T ss_pred hHHHHHHHHhcCc-ccccccc----------cccccceeeeeeCCC-Ccccccc----cccCCCCcEEECCCC-CCCCch
Confidence 4556667777665 3333322 446888999999875 4655432 456899999999988 455543
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
. + ..+++|++|++++|.+ ..++. ..+++|++|+++++.... .+...+..+++|+.|++..+.+
T Consensus 80 -~-l-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 80 -A-L-----KELTNLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp -G-G-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred -h-h-----cCCCCCCEEECCCCcc----CccChhHhcCCcCCCEEECCCCcCCc---cCHHHhccCCCCCEEECCCCcc
Confidence 2 2 5788999999999877 44443 457899999999876433 4444678889999999966676
Q ss_pred CCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCC-CCCCCCcCEEEEecCCCceeecc
Q 036801 189 WLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPS-STSFQNLTTLEISHCNGLKNVLT 267 (388)
Q Consensus 189 ~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~ 267 (388)
+.. + + ..+..+++|+.|++++| .++.+++. +..+++|+.|+++++ .+..++.
T Consensus 146 ---~~~-~--------------------~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 198 (272)
T 3rfs_A 146 ---QSL-P--------------------K-GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD 198 (272)
T ss_dssp ---CCC-C--------------------T-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ---Ccc-C--------------------H-HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCH
Confidence 322 1 1 44567889999999988 45555544 478899999999875 5666655
Q ss_pred hhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCC
Q 036801 268 FLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPS 338 (388)
Q Consensus 268 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 338 (388)
. ....+++|+.|++.+++-.. .++.|+.|+++.+.....++... ..++.
T Consensus 199 ~-~~~~l~~L~~L~l~~N~~~~-------------------~~~~l~~l~~~~n~~~g~ip~~~--~~~~~ 247 (272)
T 3rfs_A 199 G-VFDRLTSLQYIWLHDNPWDC-------------------TCPGIRYLSEWINKHSGVVRNSA--GSVAP 247 (272)
T ss_dssp T-TTTTCTTCCEEECCSSCBCC-------------------CTTTTHHHHHHHHHTGGGBBCTT--SCBCG
T ss_pred H-HHhCCcCCCEEEccCCCccc-------------------cCcHHHHHHHHHHhCCCcccCcc--cccCC
Confidence 3 34578899999998764211 24678888877765455566544 44443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=3.4e-13 Score=123.04 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
.+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++. ...+++|++|+++++
T Consensus 149 ~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 149 GLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN 205 (308)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS
T ss_pred CCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC
Confidence 3445555555544 2333322 444455555555543 3333332 224455555555443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=122.77 Aligned_cols=206 Identities=18% Similarity=0.144 Sum_probs=97.8
Q ss_pred ccccceEecccccccccccCCCccc--ccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801 66 FPRLQYLKMYDLEKLTSFSTGDVHM--LEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF 143 (388)
Q Consensus 66 l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l 143 (388)
+++|++|++.++ .+....+.. + ..+++|++|++++|. +........ ......+++|++|++++|.+ ..+
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~--~~~~~~~~L~~L~Ls~n~-i~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l----~~~ 160 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPL--PLEATGLALSSLRLRNVS-WATGRSWLA-ELQQWLKPGLKVLSIAQAHS----PAF 160 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCC--SSSCCCBCCSSCEEESCC-CSSTTSSHH-HHHTTBCSCCCEEEEECCSS----CCC
T ss_pred cCceeEEEeeCC-Eeccchhhh--hhhccCCCCCEEEeeccc-ccchhhhhH-HHHhhhccCCCEEEeeCCCc----chh
Confidence 455667777654 344433332 2 456667777776663 321100000 00002466677777766665 233
Q ss_pred ch---hhccCccEeecccccccccc-ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceecccc
Q 036801 144 SK---DLLCKLKCLDVEFVDELTTI-LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHE 219 (388)
Q Consensus 144 p~---~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~ 219 (388)
+. ..+++|++|+++++...... ..+...+..+++|++|++..+.+ +. ++... . .
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~-l~~~~-----------------~-~ 218 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM---ET-PTGVC-----------------A-A 218 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC---CC-HHHHH-----------------H-H
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC---Cc-hHHHH-----------------H-H
Confidence 32 23566777777666432100 01111224566677776644455 21 11000 0 0
Q ss_pred CCCCCCccceEEecCCccccccCCCCCCC---CCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCC
Q 036801 220 SSSIMDNLVILRVSSCHHLINLVPSSTSF---QNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADD 296 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~ 296 (388)
.+..+++|++|++++|......|..+..+ ++|++|+++++ .+..++.. ..++|++|+++++ .++.+..
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~----~~~~L~~L~Ls~N-~l~~~~~--- 289 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG----LPAKLRVLDLSSN-RLNRAPQ--- 289 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC----CCSCCSCEECCSC-CCCSCCC---
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh----hcCCCCEEECCCC-cCCCCch---
Confidence 12345666777776664323224444333 56777777643 45555442 1256777777444 3443321
Q ss_pred CCCccccccceecccccceeecccc
Q 036801 297 DDDHDAAKDEVIAFSKLNELRLLNL 321 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~c 321 (388)
...+++|+.|++.+.
T Consensus 290 ----------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 ----------PDELPEVDNLTLDGN 304 (310)
T ss_dssp ----------TTSCCCCSCEECSST
T ss_pred ----------hhhCCCccEEECcCC
Confidence 013467777777664
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.6e-12 Score=113.55 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=128.6
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
.+.+++++++ ..++.+ |..+ .++++.|++++| .+..++... +..+++|++|++.++ .+..+++
T Consensus 14 ~~~~~l~~~~-~~l~~~-p~~~-----~~~l~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSV-PSGI-----PADTEKLDLQST-GLATLSDAT--------FRGLTKLTWLNLDYN-QLQTLSA 76 (251)
T ss_dssp GGGTEEECTT-CCCSSC-CSCC-----CTTCCEEECTTS-CCCCCCTTT--------TTTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCeEEecCC-CCcccc-CCCC-----CCCCCEEEccCC-CcCccCHhH--------hcCcccCCEEECCCC-cCCccCH
Confidence 3568888887 456665 4433 347999999998 465554431 567899999999974 6888776
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~ 162 (388)
.. +..+++|++|+++++ .++.++...+ ..+++|++|++++|.+ ..++. ..+++|+.|+++++...
T Consensus 77 ~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 77 GV--FDDLTELGTLGLANN-QLASLPLGVF-----DHLTQLDKLYLGGNQL----KSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hH--hccCCcCCEEECCCC-cccccChhHh-----cccCCCCEEEcCCCcC----CCcChhHhccCCcccEEECcCCcCC
Confidence 64 677999999999988 6777766655 5889999999999887 45554 34789999999987543
Q ss_pred cccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCc
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCH 236 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~ 236 (388)
. ++...+..+++|+.|++..|.+ +.. + + ..+..+++|+.|++.+++
T Consensus 145 ~---~~~~~~~~l~~L~~L~L~~N~l---~~~-~--------------------~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 145 S---IPAGAFDKLTNLQTLSLSTNQL---QSV-P--------------------H-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp C---CCTTTTTTCTTCCEEECCSSCC---SCC-C--------------------T-TTTTTCTTCCEEECCSCC
T ss_pred c---cCHHHcCcCcCCCEEECCCCcC---Ccc-C--------------------H-HHHhCCCCCCEEEeeCCc
Confidence 3 4555678899999999976777 322 1 1 456677889999998874
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=2.8e-14 Score=134.51 Aligned_cols=245 Identities=14% Similarity=0.090 Sum_probs=143.8
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccc--cccccc-cCCC----cccccCCCccEEEeecC
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDL--EKLTSF-STGD----VHMLEFPSLKELWISRC 104 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~-~~~~----~~~~~~~~L~~L~l~~c 104 (388)
.+++|++|++++| .+....... ....+..+++|++|+++++ ..+... +.+. -.+..+++|++|++++|
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~----l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARW----LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHH----HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred cCCCccEEECCCC-CCCHHHHHH----HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 6788888888887 333321100 0001456888888888875 222221 1110 00245788999999887
Q ss_pred CCceE-----ecccccCCccccccCCccEEEEeecCccccc-cccch--hhc---------cCccEeecccccccccccc
Q 036801 105 PGFMV-----KFKRTTNDLTKKVFPNLEELIVDAKYITTNK-FLFSK--DLL---------CKLKCLDVEFVDELTTILS 167 (388)
Q Consensus 105 ~~l~~-----~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~-~~lp~--~~l---------~~L~~L~l~~~~~~~~~~~ 167 (388)
.+.. ++... ..+++|++|++++|.+.... ..++. ..+ ++|++|+++++..-. ...
T Consensus 105 -~l~~~~~~~l~~~l------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 176 (386)
T 2ca6_A 105 -AFGPTAQEPLIDFL------SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSM 176 (386)
T ss_dssp -CCCTTTHHHHHHHH------HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGH
T ss_pred -cCCHHHHHHHHHHH------HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHH
Confidence 3432 22222 46788999999888763110 11111 113 789999998876432 222
Q ss_pred ch--hHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccc----ccc
Q 036801 168 LD--DFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHL----INL 241 (388)
Q Consensus 168 ~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l----~~l 241 (388)
+. ..+..+++|++|++..+.+ +.. +. ..+.+ ..+..+++|+.|++++|..- ..+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l---~~~---g~-------------~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGI---RPE---GI-------------EHLLL-EGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCC---CHH---HH-------------HHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcCEEECcCCCC---CHh---HH-------------HHHHH-HHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 21 3566788999999955566 210 00 00000 25667789999999888542 455
Q ss_pred CCCCCCCCCcCEEEEecCCCceeecchh---hh--hccCccCEEeecccccccc-----ccccCCCCCccccccceeccc
Q 036801 242 VPSSTSFQNLTTLEISHCNGLKNVLTFL---IA--KTLVRLREMKIESCAMITE-----IVLADDDDDHDAAKDEVIAFS 311 (388)
Q Consensus 242 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~--~~~~~L~~L~l~~c~~l~~-----i~~~~~~~~~~~~~~~~~~~~ 311 (388)
+..+..+++|+.|++++|. +.+..... .. ..+++|++|++++|. ++. +.... ...++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-----------~~~l~ 303 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-----------DEKMP 303 (386)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-----------HHHCT
T ss_pred HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-----------HhcCC
Confidence 6667788899999998763 54432211 12 227889999997764 443 22110 02368
Q ss_pred ccceeeccccc
Q 036801 312 KLNELRLLNLE 322 (388)
Q Consensus 312 ~L~~L~l~~c~ 322 (388)
+|+.|++.+++
T Consensus 304 ~L~~L~l~~N~ 314 (386)
T 2ca6_A 304 DLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTSB
T ss_pred CceEEEccCCc
Confidence 99999998875
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=121.02 Aligned_cols=231 Identities=13% Similarity=0.074 Sum_probs=148.7
Q ss_pred cccEEeEecCCCCcccccc--cccccccccccceeeccccccccEeeeccccccccccc--ccccccceEeccccccccc
Q 036801 7 NLTHLTFYNCMNLRCLFSS--STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNI--VIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~ 82 (388)
.++.+.+.++......... .+. .+++|++|++++|. +....... + ..+++|++|+++++ .+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~~--------~~~~~~~~L~~L~Ls~n-~i~~ 131 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVL---AYSRLKELTLEDLK-ITGTMPPL--------PLEATGLALSSLRLRNV-SWAT 131 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHH---HHSCCCEEEEESCC-CBSCCCCC--------SSSCCCBCCSSCEEESC-CCSS
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhc---ccCceeEEEeeCCE-eccchhhh--------hhhccCCCCCEEEeecc-cccc
Confidence 4678888776432111111 012 46679999999984 43322221 3 57899999999875 4554
Q ss_pred ccCCC--cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccc---ccchhhccCccEeecc
Q 036801 83 FSTGD--VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKF---LFSKDLLCKLKCLDVE 157 (388)
Q Consensus 83 ~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~---~lp~~~l~~L~~L~l~ 157 (388)
..... .....+++|++|++++| .+..++...+ ..+++|++|++++|.+..... ....+.+++|++|+++
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQV-----RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSC-----CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred hhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHh-----ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 22210 01335899999999988 5566665554 588999999999987632100 1112457899999999
Q ss_pred ccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCcc
Q 036801 158 FVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHH 237 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~ 237 (388)
++..-.....+...+..+++|+.|+++.|.+ +...|..+ ..+..+++|++|++++| .
T Consensus 206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~p~~~-------------------~~~~~~~~L~~L~Ls~N-~ 262 (310)
T 4glp_A 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATVNPSA-------------------PRCMWSSALNSLNLSFA-G 262 (310)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCCCSCC-------------------SSCCCCTTCCCEECCSS-C
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEECCCCCC---CccchhhH-------------------HhccCcCcCCEEECCCC-C
Confidence 9864320011112357889999999977777 44333211 12223479999999988 5
Q ss_pred ccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 238 LINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 238 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
++.+|..+. ++|+.|+++++ .+..++. ...+++|+.|++++.
T Consensus 263 l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 263 LEQVPKGLP--AKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCCSCCC--SCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSST
T ss_pred CCchhhhhc--CCCCEEECCCC-cCCCCch---hhhCCCccEEECcCC
Confidence 567776553 89999999965 6776654 247899999999765
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=1.4e-13 Score=129.66 Aligned_cols=248 Identities=12% Similarity=0.032 Sum_probs=134.6
Q ss_pred cccccccceEecccccccccccCCCc--ccccCCCccEEEeecCC--CceE-ecccccC-CccccccCCccEEEEeecCc
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDV--HMLEFPSLKELWISRCP--GFMV-KFKRTTN-DLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~--~l~~-~~~~~~~-~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|++|+++++ .+.......+ .+..+++|++|++++|. .+.. +|..... ......+++|++|++++|.+
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 556788888888875 4544211100 03457888888888772 2221 1111100 00003568888888888776
Q ss_pred ccc-ccccch--hhccCccEeeccccccccccccc---hhHhhcC---------CCccEEEEEeccCCCCce-eecCccc
Q 036801 137 TTN-KFLFSK--DLLCKLKCLDVEFVDELTTILSL---DDFLQRF---------HTLKVLQIEGYNYWLPKE-KVENGVE 200 (388)
Q Consensus 137 ~~~-~~~lp~--~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~l---------~~L~~L~l~~~~l~~~~~-~~~~~~~ 200 (388)
... ...++. ..+++|++|++++|..-. ..+ ...+..+ ++|+.|++..+.+ +. .++ .+.
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l---~~~~~~-~l~ 180 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMK-EWA 180 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHH--HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC---TGGGHH-HHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCH--HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC---CcHHHH-HHH
Confidence 321 111332 346788888888875421 111 1123333 7888888855555 21 111 000
Q ss_pred cccceeeeeeccceeccccCCCCCCccceEEecCCcccc-----ccCCCCCCCCCcCEEEEecCCCce-----eecchhh
Q 036801 201 VIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLI-----NLVPSSTSFQNLTTLEISHCNGLK-----NVLTFLI 270 (388)
Q Consensus 201 ~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~ 270 (388)
..+..+++|+.|++++|.... -.+..+..+++|+.|++++|. +. .++. .
T Consensus 181 ------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~--~ 239 (386)
T 2ca6_A 181 ------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI--A 239 (386)
T ss_dssp ------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH--H
T ss_pred ------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH--H
Confidence 233456788888888874321 122256777888888888653 42 2222 3
Q ss_pred hhccCccCEEeeccccccccccccCCCCCccccccce--ecccccceeecccccccce-----eccCcccccCCCcceEe
Q 036801 271 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV--IAFSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLL 343 (388)
Q Consensus 271 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~ 343 (388)
+..+++|++|++++|. ++...... ..... ..+++|+.|++++|. +.. ++... ...+++|++|+
T Consensus 240 l~~~~~L~~L~L~~n~-i~~~~~~~-------l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-~~~l~~L~~L~ 309 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCL-LSARGAAA-------VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLE 309 (386)
T ss_dssp GGGCTTCCEEECTTCC-CCHHHHHH-------HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEE
T ss_pred HccCCCcCEEECCCCC-CchhhHHH-------HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-HhcCCCceEEE
Confidence 4567788888887664 33221000 00001 125788888888864 444 55432 24578888888
Q ss_pred ccCCc
Q 036801 344 VDDCT 348 (388)
Q Consensus 344 l~~c~ 348 (388)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 88764
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=5.1e-12 Score=111.65 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=69.3
Q ss_pred cccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEeccc
Q 036801 34 VRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKR 113 (388)
Q Consensus 34 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 113 (388)
...++++++++ .++.+|.. ..++|+.|++.++ .+..+.... +..+++|++|+++++ .++.++..
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~-----------~~~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSG-----------IPADTEKLDLQST-GLATLSDAT--FRGLTKLTWLNLDYN-QLQTLSAG 77 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSC-----------CCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCCeEEecCCC-CccccCCC-----------CCCCCCEEEccCC-CcCccCHhH--hcCcccCCEEECCCC-cCCccCHh
Confidence 34566676665 45555543 1246777777763 566665543 556777777777776 55555444
Q ss_pred ccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 114 TTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 114 ~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
.+ ..+++|++|++++|.+ ..++. ..+++|++|+++++.... ++...+..+++|+.|++..|.+
T Consensus 78 ~~-----~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 78 VF-----DDLTELGTLGLANNQL----ASLPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TT-----TTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC
T ss_pred Hh-----ccCCcCCEEECCCCcc----cccChhHhcccCCCCEEEcCCCcCCC---cChhHhccCCcccEEECcCCcC
Confidence 33 4666777777776665 23332 234555555555543221 2333344555555555544444
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=5.3e-13 Score=124.65 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=117.1
Q ss_pred EeEecCCCCcccccccccccccccccceeeccccccccEeeeccccccccccccccc-ccceEecccccccccccCCCcc
Q 036801 11 LTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFP-RLQYLKMYDLEKLTSFSTGDVH 89 (388)
Q Consensus 11 L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~ 89 (388)
+.++.+ .++...|..+. ..++|++|++++|. +......... ..+..++ +|++|+++++ .+.......
T Consensus 3 ~~ls~n-~~~~~~~~~~~---~~~~L~~L~Ls~n~-l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-- 70 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTS---IPHGVTSLDLSLNN-LYSISTVELI----QAFANTPASVTSLNLSGN-SLGFKNSDE-- 70 (362)
T ss_dssp EECCCC-TTCCHHHHHHT---SCTTCCEEECTTSC-GGGSCHHHHH----HHHHTCCTTCCEEECCSS-CGGGSCHHH--
T ss_pred cccccc-cchHHHHHHHh---CCCCceEEEccCCC-CChHHHHHHH----HHHHhCCCceeEEECcCC-CCCHHHHHH--
Confidence 455553 34433344333 44558888888773 5443321000 0144566 7888888764 455543321
Q ss_pred ccc-----CCCccEEEeecCCCceEecccccCCcccccc-CCccEEEEeecCccccccccchhh--------ccCccEee
Q 036801 90 MLE-----FPSLKELWISRCPGFMVKFKRTTNDLTKKVF-PNLEELIVDAKYITTNKFLFSKDL--------LCKLKCLD 155 (388)
Q Consensus 90 ~~~-----~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~~~~~~lp~~~--------l~~L~~L~ 155 (388)
+.. +++|++|++++| .+.......+... ...+ ++|++|++++|.+. ..+... .++|++|+
T Consensus 71 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 71 LVQILAAIPANVTSLNLSGN-FLSYKSSDELVKT-LAAIPFTITVLDLGWNDFS----SKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHH-HHTSCTTCCEEECCSSCGG----GSCHHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHhccCCCccEEECcCC-cCChHHHHHHHHH-HHhCCCCccEEECcCCcCC----cHHHHHHHHHHHhCCCceeEEE
Confidence 222 277888888777 3443222211000 0123 67888888777762 222211 24778888
Q ss_pred ccccccccccc--cchhHhhcCC-CccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCC-CccceEE
Q 036801 156 VEFVDELTTIL--SLDDFLQRFH-TLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIM-DNLVILR 231 (388)
Q Consensus 156 l~~~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l-~~L~~L~ 231 (388)
++++..-. .. .....+...+ +|++|++..+.+ +...+..+. ..+... ++|++|+
T Consensus 145 Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l---~~~~~~~l~------------------~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 145 LRGNDLGI-KSSDELIQILAAIPANVNSLNLRGNNL---ASKNCAELA------------------KFLASIPASVTSLD 202 (362)
T ss_dssp CTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHH------------------HHHHTSCTTCCEEE
T ss_pred ccCCcCCH-HHHHHHHHHHhcCCccccEeeecCCCC---chhhHHHHH------------------HHHHhCCCCCCEEE
Confidence 77764321 11 0011234444 788887744555 222111111 222233 4777777
Q ss_pred ecCCccccc-----cCCCCCC-CCCcCEEEEecCCCceeecch---hhhhccCccCEEeecccc
Q 036801 232 VSSCHHLIN-----LVPSSTS-FQNLTTLEISHCNGLKNVLTF---LIAKTLVRLREMKIESCA 286 (388)
Q Consensus 232 l~~c~~l~~-----l~~~~~~-~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~l~~c~ 286 (388)
+++|. ++. ++..+.. .++|+.|+++++ .+.+.+.. .+...+++|++|++++|.
T Consensus 203 Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 203 LSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 77764 333 3333333 347777777764 45544331 122455677777776653
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=1.2e-11 Score=105.00 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=109.9
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+++|++|+++++ .++.+ | .+. .+++|++|++++| .+..++. +..+++|++|++.++ .+...
T Consensus 42 ~l~~L~~L~l~~n-~i~~l-~-~l~---~l~~L~~L~l~~n-~~~~~~~----------l~~l~~L~~L~l~~n-~l~~~ 103 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDL-T-GIE---YAHNIKDLTINNI-HATNYNP----------ISGLSNLERLRIMGK-DVTSD 103 (197)
T ss_dssp HHHTCCEEEEESS-CCSCC-T-TGG---GCTTCSEEEEESC-CCSCCGG----------GTTCTTCCEEEEECT-TCBGG
T ss_pred hcCCccEEeccCC-CccCh-H-HHh---cCCCCCEEEccCC-CCCcchh----------hhcCCCCCEEEeECC-ccCcc
Confidence 4678999999985 45554 4 467 8999999999998 5554431 667999999999984 67664
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhccCccEeeccccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~~L~~L~l~~~~~~ 162 (388)
.... +..+++|++|++++| .+.......+ ..+++|++|++++|..+ ..+ +...+++|++|+++++...
T Consensus 104 ~~~~--l~~l~~L~~L~Ls~n-~i~~~~~~~l-----~~l~~L~~L~L~~n~~i---~~~~~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 104 KIPN--LSGLTSLTLLDISHS-AHDDSILTKI-----NTLPKVNSIDLSYNGAI---TDIMPLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp GSCC--CTTCTTCCEEECCSS-BCBGGGHHHH-----TTCSSCCEEECCSCTBC---CCCGGGGGCSSCCEEECTTBCCC
T ss_pred cChh--hcCCCCCCEEEecCC-ccCcHhHHHH-----hhCCCCCEEEccCCCCc---cccHhhcCCCCCCEEECCCCCCc
Confidence 4443 667999999999998 4443222222 57899999999998732 333 3456899999999998643
Q ss_pred cccccchhHhhcCCCccEEEEEeccC
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
. ++ .+..+++|+.|++..|.+
T Consensus 173 ~---~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 173 D---YR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp C---CT--TGGGCSSCCEEEECBC--
T ss_pred C---hH--HhccCCCCCEEEeeCccc
Confidence 3 32 567899999999966665
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=1.6e-11 Score=110.98 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred CCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSF 83 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 83 (388)
.+++|++|++++| .++.+ +.++ .+++|++|++++| .+..++. +..+++|++|++.++ .+..+
T Consensus 44 ~l~~L~~L~l~~~-~i~~~--~~~~---~l~~L~~L~L~~n-~l~~~~~----------l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSV--QGIQ---YLPNVTKLFLNGN-KLTDIKP----------LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp HHHTCCEEECTTS-CCCCC--TTGG---GCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSS-CCCCG
T ss_pred hcCcccEEEccCC-CcccC--hhHh---cCCCCCEEEccCC-ccCCCcc----------cccCCCCCEEECCCC-cCCCC
Confidence 3556777777765 34443 2355 6777777777776 3444322 345677777777653 45544
Q ss_pred cCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccc
Q 036801 84 STGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDEL 162 (388)
Q Consensus 84 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~ 162 (388)
+. +..+++|++|++++| .+..++. + ..+++|+.|++++|.+. .++ ...+++|+.|+++++...
T Consensus 106 ~~----l~~l~~L~~L~L~~n-~i~~~~~--l-----~~l~~L~~L~l~~n~l~----~~~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 106 SS----LKDLKKLKSLSLEHN-GISDING--L-----VHLPQLESLYLGNNKIT----DITVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp GG----GTTCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSSCCC----CCGGGGGCTTCSEEECCSSCCC
T ss_pred hh----hccCCCCCEEECCCC-cCCCChh--h-----cCCCCCCEEEccCCcCC----cchhhccCCCCCEEEccCCccc
Confidence 32 345677777777766 4444321 1 46677777777776652 222 234667777777766432
Q ss_pred cccccchhHhhcCCCccEEEEEeccC
Q 036801 163 TTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 163 ~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
. .+. +..+++|+.|++..|.+
T Consensus 170 ~---~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 170 D---IVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp C---CGG--GTTCTTCCEEECCSSCC
T ss_pred c---chh--hcCCCccCEEECCCCcC
Confidence 2 221 55667777777754555
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=3.4e-11 Score=108.84 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=99.5
Q ss_pred ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801 64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF 143 (388)
Q Consensus 64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l 143 (388)
..+++|+.|++.++ .+..++ + +..+++|++|++++| .++.++. + ..+++|+.|++++|.+ ..+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~---~~~l~~L~~L~L~~n-~l~~~~~--l-----~~l~~L~~L~l~~n~l----~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-G---IQYLPNVTKLFLNGN-KLTDIKP--L-----ANLKNLGWLFLDENKV----KDL 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCGG--G-----TTCTTCCEEECCSSCC----CCG
T ss_pred hhcCcccEEEccCC-CcccCh-h---HhcCCCCCEEEccCC-ccCCCcc--c-----ccCCCCCEEECCCCcC----CCC
Confidence 35666777777654 454442 1 345677777777766 4444443 2 4667777777777665 222
Q ss_pred c-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCC
Q 036801 144 S-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSS 222 (388)
Q Consensus 144 p-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~ 222 (388)
+ ...+++|++|+++++.... ++ .+..+++|+.|++..+.+ +.. ..+.
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~---~~--~l~~l~~L~~L~l~~n~l---~~~------------------------~~l~ 153 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISD---IN--GLVHLPQLESLYLGNNKI---TDI------------------------TVLS 153 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCC---CG--GGGGCTTCCEEECCSSCC---CCC------------------------GGGG
T ss_pred hhhccCCCCCEEECCCCcCCC---Ch--hhcCCCCCCEEEccCCcC---Ccc------------------------hhhc
Confidence 2 2446677777777764322 21 456677777777755555 221 2334
Q ss_pred CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
.+++|+.|++++| .++.+++ +..+++|+.|+++++ .+.+++. ...+++|+.|++.++
T Consensus 154 ~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 154 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEE
T ss_pred cCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCC
Confidence 5677777777776 4444444 666777777777754 5555543 346777777777654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=1.5e-11 Score=122.12 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=25.3
Q ss_pred CCCccceEEecCCccccccCCCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
.+++|+.|+|++| .+..+++ +..+++|+.|++++| .+.+++. +..+++|+.|++.++
T Consensus 151 ~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 151 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQ 207 (605)
T ss_dssp SCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCSE
T ss_pred ccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChH---HccCCCCCEEEccCC
Confidence 3445555555544 2333322 444555555555543 3333321 234455555555443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.4e-11 Score=105.59 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=93.2
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.++.++ .+++.+ |.. -.++|++|+++++ .+..++... +..+++|++|++.++ ++..++...
T Consensus 10 ~~v~c~~-~~l~~~-p~~-----~~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~- 71 (208)
T 2o6s_A 10 TTVECYS-QGRTSV-PTG-----IPAQTTYLDLETN-SLKSLPNGV--------FDELTSLTQLYLGGN-KLQSLPNGV- 71 (208)
T ss_dssp TEEECCS-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTT-
T ss_pred CEEEecC-CCccCC-CCC-----CCCCCcEEEcCCC-ccCcCChhh--------hcccccCcEEECCCC-ccCccChhh-
Confidence 4566665 344444 432 3557999999998 566554431 457899999999874 687777654
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccccc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~ 165 (388)
+..+++|++|++++| .++.++...+ ..+++|++|++++|.+ ..++. ..+++|++|+++++....
T Consensus 72 -~~~l~~L~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~N~l~~-- 138 (208)
T 2o6s_A 72 -FNKLTSLTYLNLSTN-QLQSLPNGVF-----DKLTQLKELALNTNQL----QSLPDGVFDKLTQLKDLRLYQNQLKS-- 138 (208)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred -cCCCCCcCEEECCCC-cCCccCHhHh-----cCccCCCEEEcCCCcC----cccCHhHhccCCcCCEEECCCCccce--
Confidence 567899999999988 6666666554 5788999999988876 33333 235566666666543221
Q ss_pred ccchhHhhcCCCccEEEE
Q 036801 166 LSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l 183 (388)
++...+..+++|+.|++
T Consensus 139 -~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 139 -VPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp -CCTTTTTTCTTCCEEEC
T ss_pred -eCHHHhccCCCccEEEe
Confidence 33334455566666666
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=1.7e-11 Score=109.06 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=108.0
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+.+++.+++.++ .+.+++. +..+++|++|++.++ .+..++ . +..+++|++|++++| .++.++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~~----------~~~l~~L~~L~l~~n-~i~~l~-~---l~~l~~L~~L~L~~N-~i~~~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLVS----------QKELSGVQNFNGDNS-NIQSLA-G---MQFFTNLKELHLSHN-QISDLS 79 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEEC----------HHHHTTCSEEECTTS-CCCCCT-T---GGGCTTCCEEECCSS-CCCCCG
T ss_pred HHHHHHHHHhcCC-Ccccccc----------hhhcCcCcEEECcCC-Ccccch-H---HhhCCCCCEEECCCC-ccCCCh
Confidence 5667778888776 4555542 456888888888875 566665 2 456888888888887 566665
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLP 191 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 191 (388)
. + ..+++|+.|++++|.+ ..++....++|++|+++++.... .+ .+..+++|+.|+++.|.+
T Consensus 80 ~--l-----~~l~~L~~L~L~~N~l----~~l~~~~~~~L~~L~L~~N~l~~---~~--~l~~l~~L~~L~Ls~N~i--- 140 (263)
T 1xeu_A 80 P--L-----KDLTKLEELSVNRNRL----KNLNGIPSACLSRLFLDNNELRD---TD--SLIHLKNLEILSIRNNKL--- 140 (263)
T ss_dssp G--G-----TTCSSCCEEECCSSCC----SCCTTCCCSSCCEEECCSSCCSB---SG--GGTTCTTCCEEECTTSCC---
T ss_pred h--h-----ccCCCCCEEECCCCcc----CCcCccccCcccEEEccCCccCC---Ch--hhcCcccccEEECCCCcC---
Confidence 5 2 5788888888888776 33333222777788877764322 22 466777788777755555
Q ss_pred ceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801 192 KEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 192 ~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 259 (388)
+.. ..+..+++|+.|++++| .++.+ ..+..+++|+.|+++++
T Consensus 141 ~~~------------------------~~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 141 KSI------------------------VMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CBC------------------------GGGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred CCC------------------------hHHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 221 23345677777777776 33433 44566677777777654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=3.6e-11 Score=119.34 Aligned_cols=166 Identities=18% Similarity=0.177 Sum_probs=80.6
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|+.|++++| .+..++. +..+++|+.|+|.++ .+..+++ +..+++|+.|++++| .+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~~----------l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~ 103 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQG----------IQYLPNVTKLFLNGN-KLTDIKP----LTNLKNLGWLFLDEN-KIKDLS 103 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCTT----------GGGCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSS-CCCCCT
T ss_pred cCCCCCEEECcCC-CCCCChH----------HccCCCCCEEEeeCC-CCCCChh----hccCCCCCEEECcCC-CCCCCh
Confidence 4555666666555 2333321 345556666666543 3444332 224566666666555 343332
Q ss_pred ccccCCccccccCCccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801 112 KRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL 190 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 190 (388)
.. ..+++|+.|++++|.+. .++ ...+++|+.|+++++.... + ..+..+++|+.|+++.+.+
T Consensus 104 -~l------~~l~~L~~L~Ls~N~l~----~l~~l~~l~~L~~L~Ls~N~l~~---l--~~l~~l~~L~~L~Ls~N~l-- 165 (605)
T 1m9s_A 104 -SL------KDLKKLKSLSLEHNGIS----DINGLVHLPQLESLYLGNNKITD---I--TVLSRLTKLDTLSLEDNQI-- 165 (605)
T ss_dssp -TS------TTCTTCCEEECTTSCCC----CCGGGGGCTTCSEEECCSSCCCC---C--GGGGSCTTCSEEECCSSCC--
T ss_pred -hh------ccCCCCCEEEecCCCCC----CCccccCCCccCEEECCCCccCC---c--hhhcccCCCCEEECcCCcC--
Confidence 11 35556666666655542 222 2345566666666553222 1 2445566666666644444
Q ss_pred CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCCCCCCCcCEEEEecC
Q 036801 191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 259 (388)
... ..+..+++|+.|+|++| .+..+ +.+..+++|+.|++++|
T Consensus 166 -~~~------------------------~~l~~l~~L~~L~Ls~N-~i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 166 -SDI------------------------VPLAGLTKLQNLYLSKN-HISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp -CCC------------------------GGGTTCTTCCEEECCSS-CCCBC-GGGTTCTTCSEEECCSE
T ss_pred -CCc------------------------hhhccCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEccCC
Confidence 211 11334555666666555 33333 23455556666666543
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=1.2e-12 Score=122.14 Aligned_cols=245 Identities=10% Similarity=0.001 Sum_probs=144.9
Q ss_pred CCCcccEEeEecCCCCccccc----cccccccccc-ccceeeccccccccEeeeccccccccccccc-ccccceEecccc
Q 036801 4 GIQNLTHLTFYNCMNLRCLFS----SSTVSNSSFV-RLQYIEIEKCHVLEELIVMDNQEEDRNNIVI-FPRLQYLKMYDL 77 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~~~~p----~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~ 77 (388)
..++|++|++++|. ++...+ ..+. +++ +|++|++++| .+.......... -+.. +++|++|+++++
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~---~~~~~L~~L~Ls~N-~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFA---NTPASVTSLNLSGN-SLGFKNSDELVQ----ILAAIPANVTSLNLSGN 90 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHH---TCCTTCCEEECCSS-CGGGSCHHHHHH----HHHTSCTTCCEEECCSS
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHH---hCCCceeEEECcCC-CCCHHHHHHHHH----HHhccCCCccEEECcCC
Confidence 34569999999965 676655 4455 687 8999999998 455432211000 0112 389999999986
Q ss_pred cccccccCCCc--ccccC-CCccEEEeecCCCceEecccccCCccccc-cCCccEEEEeecCcccc-ccccchh--hcc-
Q 036801 78 EKLTSFSTGDV--HMLEF-PSLKELWISRCPGFMVKFKRTTNDLTKKV-FPNLEELIVDAKYITTN-KFLFSKD--LLC- 149 (388)
Q Consensus 78 ~~l~~~~~~~~--~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~~~-~~~lp~~--~l~- 149 (388)
.+.......+ .+..+ ++|++|++++| .+...+...+...+ .. .++|++|++++|.+... ...++.. .++
T Consensus 91 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 91 -FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAF-SNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp -CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH-TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred -cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHH-HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 4665443210 02234 89999999999 45544332210000 12 36999999999887321 1122222 233
Q ss_pred CccEeeccccccccccccch---hHhhcC-CCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCC-C
Q 036801 150 KLKCLDVEFVDELTTILSLD---DFLQRF-HTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSI-M 224 (388)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~---~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~-l 224 (388)
+|++|++++|..-. ..+. ..+... ++|+.|+++.|.+ +..-...+. ..+.. .
T Consensus 168 ~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~i---~~~~~~~l~------------------~~l~~~~ 224 (362)
T 3goz_A 168 NVNSLNLRGNNLAS--KNCAELAKFLASIPASVTSLDLSANLL---GLKSYAELA------------------YIFSSIP 224 (362)
T ss_dssp TCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHH------------------HHHHHSC
T ss_pred cccEeeecCCCCch--hhHHHHHHHHHhCCCCCCEEECCCCCC---ChhHHHHHH------------------HHHhcCC
Confidence 99999999986432 2221 234455 5999999966666 321110010 22223 3
Q ss_pred CccceEEecCCcccccc-----CCCCCCCCCcCEEEEecCCCceeecch---h---hhhccCccCEEeeccc
Q 036801 225 DNLVILRVSSCHHLINL-----VPSSTSFQNLTTLEISHCNGLKNVLTF---L---IAKTLVRLREMKIESC 285 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~---~---~~~~~~~L~~L~l~~c 285 (388)
++|+.|++++|. ++.. ......+++|+.|++++|. +..+... . ....+++|+.|+++++
T Consensus 225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 699999999984 4332 2334678899999999873 2222111 1 1234567788888655
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=2.3e-10 Score=97.05 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=15.3
Q ss_pred CCCccceEEecCCccccccCCCCCCCCCcCEEEEec
Q 036801 223 IMDNLVILRVSSCHHLINLVPSSTSFQNLTTLEISH 258 (388)
Q Consensus 223 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 258 (388)
.+++|+.|++++|......+..+..+++|++|++++
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 344444444444422222333344444455555443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=1.8e-10 Score=113.17 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=55.3
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
+|+.|++++| ++..++.. + +++|++|+++++ ++..++ . .+++|++|++++| .++.+|. .
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~---------l--~~~L~~L~Ls~N-~l~~ip-~-----~l~~L~~L~Ls~N-~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN---------L--PPQITVLEITQN-ALISLP-E-----LPASLEYLDACDN-RLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC---------C--CTTCSEEECCSS-CCSCCC-C-----CCTTCCEEECCSS-CCSCCCC-C
T ss_pred CccEEEeCCC-CCCccCHh---------H--cCCCCEEECcCC-CCcccc-c-----ccCCCCEEEccCC-CCCCcch-h
Confidence 5556666555 34443332 1 355666666543 455444 2 2556666666555 4443433 1
Q ss_pred cCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
.. +|+.|++++|.+ ..+|. .+++|+.|+++++.... +|. .+++|+.|++..|.+
T Consensus 119 ------~~--~L~~L~Ls~N~l----~~lp~-~l~~L~~L~Ls~N~l~~---lp~----~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 119 ------PA--SLKHLDVDNNQL----TMLPE-LPALLEYINADNNQLTM---LPE----LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ------CT--TCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC---CCC----CCTTCCEEECCSSCC
T ss_pred ------hc--CCCEEECCCCcC----CCCCC-cCccccEEeCCCCccCc---CCC----cCCCcCEEECCCCCC
Confidence 11 566666665554 23444 45566666665543221 222 345566666644444
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=2.1e-10 Score=112.76 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=131.3
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
.+|+.|+++++ .++.+ |..+ +++|++|++++| .+..++ . .+++|+.|++.++ ++..++.
T Consensus 59 ~~L~~L~Ls~n-~L~~l-p~~l-----~~~L~~L~Ls~N-~l~~ip-~-----------~l~~L~~L~Ls~N-~l~~ip~ 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSL-PDNL-----PPQITVLEITQN-ALISLP-E-----------LPASLEYLDACDN-RLSTLPE 117 (571)
T ss_dssp TTCSEEECCSS-CCSCC-CSCC-----CTTCSEEECCSS-CCSCCC-C-----------CCTTCCEEECCSS-CCSCCCC
T ss_pred CCccEEEeCCC-CCCcc-CHhH-----cCCCCEEECcCC-CCcccc-c-----------ccCCCCEEEccCC-CCCCcch
Confidence 38999999986 46665 4432 467999999998 566665 2 3789999999985 6877665
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeecccccccccc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~ 165 (388)
. ..+|++|++++| .++.+|. .+++|+.|++++|.+ ..+|. .+++|+.|+++++..-.
T Consensus 118 -l-----~~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~l----~~lp~-~l~~L~~L~Ls~N~L~~-- 174 (571)
T 3cvr_A 118 -L-----PASLKHLDVDNN-QLTMLPE---------LPALLEYINADNNQL----TMLPE-LPTSLEVLSVRNNQLTF-- 174 (571)
T ss_dssp -C-----CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCC----SCCCC-CCTTCCEEECCSSCCSC--
T ss_pred -h-----hcCCCEEECCCC-cCCCCCC---------cCccccEEeCCCCcc----CcCCC-cCCCcCEEECCCCCCCC--
Confidence 3 339999999998 5654433 578999999999987 45666 67899999999986332
Q ss_pred ccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCCCC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVPSS 245 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 245 (388)
+|. +. ++|+.|+++.|.+ + .+|. +..+| ....+.|+.|++++| .++.+|..+
T Consensus 175 -lp~--l~--~~L~~L~Ls~N~L---~-~lp~-~~~~L-----------------~~~~~~L~~L~Ls~N-~l~~lp~~l 226 (571)
T 3cvr_A 175 -LPE--LP--ESLEALDVSTNLL---E-SLPA-VPVRN-----------------HHSEETEIFFRCREN-RITHIPENI 226 (571)
T ss_dssp -CCC--CC--TTCCEEECCSSCC---S-SCCC-CC-------------------------CCEEEECCSS-CCCCCCGGG
T ss_pred -cch--hh--CCCCEEECcCCCC---C-chhh-HHHhh-----------------hcccccceEEecCCC-cceecCHHH
Confidence 444 33 8999999977788 3 3442 11000 011233499999887 667788877
Q ss_pred CCCCCcCEEEEecCC
Q 036801 246 TSFQNLTTLEISHCN 260 (388)
Q Consensus 246 ~~~~~L~~L~l~~c~ 260 (388)
..+++|+.|++++++
T Consensus 227 ~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 227 LSLDPTCTIILEDNP 241 (571)
T ss_dssp GGSCTTEEEECCSSS
T ss_pred hcCCCCCEEEeeCCc
Confidence 778999999998754
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1.7e-10 Score=107.47 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=27.7
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.+++|+.|++.+ +.+..++... +..+++|++|+++++ .++.++...+ ..+++|+.|++++|.+
T Consensus 62 ~l~~L~~L~L~~-N~i~~i~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 62 RLTNLHSLLLSH-NHLNFISSEA--FVPVPNLRYLDLSSN-HLHTLDEFLF-----SDLQALEVLLLYNNHI 124 (361)
T ss_dssp CCTTCCEEECCS-SCCCEECTTT--TTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC
T ss_pred cccccCEEECCC-CcCCccChhh--ccCCCCCCEEECCCC-cCCcCCHHHh-----CCCcCCCEEECCCCcc
Confidence 344455555543 2344444332 334444555555444 3444433333 3444455555544443
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.13 E-value=2.4e-10 Score=97.73 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=6.5
Q ss_pred CCccEEEEeecCc
Q 036801 124 PNLEELIVDAKYI 136 (388)
Q Consensus 124 ~~L~~L~i~~~~~ 136 (388)
++|++|+++++.+
T Consensus 28 ~~l~~L~l~~n~l 40 (208)
T 2o6s_A 28 AQTTYLDLETNSL 40 (208)
T ss_dssp TTCSEEECCSSCC
T ss_pred CCCcEEEcCCCcc
Confidence 3455555555444
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=2.9e-10 Score=98.23 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=104.8
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.+++++ ++++.+ |..+ .++|++|+++++ .+..++... +..+++|++|++.++ .+..+.+..
T Consensus 14 ~~v~c~~-~~l~~i-P~~l-----~~~l~~L~l~~n-~i~~i~~~~--------~~~l~~L~~L~Ls~N-~i~~~~~~~- 75 (220)
T 2v9t_B 14 NIVDCRG-KGLTEI-PTNL-----PETITEIRLEQN-TIKVIPPGA--------FSPYKKLRRIDLSNN-QISELAPDA- 75 (220)
T ss_dssp TEEECTT-SCCSSC-CSSC-----CTTCCEEECCSS-CCCEECTTS--------STTCTTCCEEECCSS-CCCEECTTT-
T ss_pred CEEEcCC-CCcCcC-CCcc-----CcCCCEEECCCC-cCCCcCHhH--------hhCCCCCCEEECCCC-cCCCcCHHH-
Confidence 4566665 345555 4322 346889999888 566665532 557888999999874 677776654
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeecccccccccc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~ 165 (388)
+..+++|++|+++++ .++.++...+ ..+++|+.|++++|.+ ..++. ..+++|+.|+++++....
T Consensus 76 -~~~l~~L~~L~Ls~N-~l~~l~~~~f-----~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~-- 142 (220)
T 2v9t_B 76 -FQGLRSLNSLVLYGN-KITELPKSLF-----EGLFSLQLLLLNANKI----NCLRVDAFQDLHNLNLLSLYDNKLQT-- 142 (220)
T ss_dssp -TTTCSSCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred -hhCCcCCCEEECCCC-cCCccCHhHc-----cCCCCCCEEECCCCCC----CEeCHHHcCCCCCCCEEECCCCcCCE--
Confidence 667889999999887 6777776655 5788999999998877 34433 346789999998876433
Q ss_pred ccchhHhhcCCCccEEEEEeccC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
++...+..+++|+.|++..|.+
T Consensus 143 -~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 143 -IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCE
T ss_pred -ECHHHHhCCCCCCEEEeCCCCc
Confidence 4444677889999999965665
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=6.4e-10 Score=96.08 Aligned_cols=61 Identities=10% Similarity=0.181 Sum_probs=31.6
Q ss_pred cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 67 PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 67 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
++|+.|++.+ +.+..++... +..+++|++|+++++ .++.+.+..+ ..+++|++|++++|.+
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~~--~~~l~~L~~L~Ls~N-~i~~~~~~~~-----~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPGA--FSPYKKLRRIDLSNN-QISELAPDAF-----QGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTS--STTCTTCCEEECCSS-CCCEECTTTT-----TTCSSCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCCcCHhH--hhCCCCCCEEECCCC-cCCCcCHHHh-----hCCcCCCEEECCCCcC
Confidence 4566666654 3455555443 445566666666655 4444433333 3455555555555544
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=4.7e-10 Score=104.54 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=34.9
Q ss_pred cccceEecccccccccccCCCcccc-cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 67 PRLQYLKMYDLEKLTSFSTGDVHML-EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 67 ~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+.++.|++++ +++..++... +. .+++|++|+++++ .++.++...+ ..+++|++|++++|.+
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~--~~~~l~~L~~L~L~~N-~i~~i~~~~~-----~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEW--TPTRLTNLHSLLLSHN-HLNFISSEAF-----VPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTS--SSSCCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC
T ss_pred CCCCEEECCC-CCCCccChhh--hhhcccccCEEECCCC-cCCccChhhc-----cCCCCCCEEECCCCcC
Confidence 3466666665 3566555543 33 5666666666665 5555554443 4566666666666554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=2.8e-10 Score=99.01 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=103.3
Q ss_pred ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801 8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD 87 (388)
Q Consensus 8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 87 (388)
-+.++.++ +.++.+ |.. -.++|++|++++| .+..+.... +..+++|++|++.++ .+..++...
T Consensus 21 ~~~v~c~~-~~l~~i-p~~-----~~~~L~~L~Ls~n-~i~~~~~~~--------~~~l~~L~~L~L~~N-~l~~i~~~~ 83 (229)
T 3e6j_A 21 GTTVDCRS-KRHASV-PAG-----IPTNAQILYLHDN-QITKLEPGV--------FDSLINLKELYLGSN-QLGALPVGV 83 (229)
T ss_dssp TTEEECTT-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCEeEccC-CCcCcc-CCC-----CCCCCCEEEcCCC-ccCccCHHH--------hhCccCCcEEECCCC-CCCCcChhh
Confidence 34566655 445555 432 3467888899887 455543321 557888899988874 677776654
Q ss_pred cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch--hhccCccEeecccccccccc
Q 036801 88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--DLLCKLKCLDVEFVDELTTI 165 (388)
Q Consensus 88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--~~l~~L~~L~l~~~~~~~~~ 165 (388)
+..+++|+.|+++++ .++.++...+ ..+++|+.|++++|.+ ..+|. ..+++|+.|+++++....
T Consensus 84 --~~~l~~L~~L~Ls~N-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~L~~N~l~~-- 149 (229)
T 3e6j_A 84 --FDSLTQLTVLDLGTN-QLTVLPSAVF-----DRLVHLKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLKS-- 149 (229)
T ss_dssp --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CSCCTTGGGCTTCSEEECCSSCCCC--
T ss_pred --cccCCCcCEEECCCC-cCCccChhHh-----CcchhhCeEeccCCcc----cccCcccccCCCCCEEECCCCcCCc--
Confidence 567888999999887 6776766655 5788899999988877 45554 357889999998875332
Q ss_pred ccchhHhhcCCCccEEEEEeccC
Q 036801 166 LSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
++...+..+++|+.|++..|.+
T Consensus 150 -~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 150 -IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp -CCTTTTTTCTTCCEEECTTSCB
T ss_pred -cCHHHHhCCCCCCEEEeeCCCc
Confidence 4445677888999999855555
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=4.9e-10 Score=96.78 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=53.7
Q ss_pred cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---hhccCccEeeccccccccccccc
Q 036801 92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---DLLCKLKCLDVEFVDELTTILSL 168 (388)
Q Consensus 92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~~l~~L~~L~l~~~~~~~~~~~~ 168 (388)
.+++|++|+++++ .++.++...+ ..+++|++|++++|.+ ..++. ..+++|++|+++++.... ++
T Consensus 55 ~l~~L~~L~L~~N-~i~~i~~~~~-----~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~ 121 (220)
T 2v70_A 55 KLPQLRKINFSNN-KITDIEEGAF-----EGASGVNEILLTSNRL----ENVQHKMFKGLESLKTLMLRSNRITC---VG 121 (220)
T ss_dssp GCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCC----CCCCGGGGTTCSSCCEEECTTSCCCC---BC
T ss_pred cCCCCCEEECCCC-cCCEECHHHh-----CCCCCCCEEECCCCcc----CccCHhHhcCCcCCCEEECCCCcCCe---EC
Confidence 3444444444444 3333333222 3444455555544444 22222 224455555555543222 22
Q ss_pred hhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCc
Q 036801 169 DDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCH 236 (388)
Q Consensus 169 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~ 236 (388)
...+..+++|+.|++..|.+ +...+ ..+..+++|+.|++.+++
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l---~~~~~----------------------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQI---TTVAP----------------------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCC---CCBCT----------------------TTTTTCTTCCEEECCSCC
T ss_pred HhHcCCCccCCEEECCCCcC---CEECH----------------------HHhcCCCCCCEEEecCcC
Confidence 23556677888888855666 33222 455566777777777764
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=7.7e-10 Score=95.55 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=99.6
Q ss_pred ceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccch---
Q 036801 70 QYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK--- 145 (388)
Q Consensus 70 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~--- 145 (388)
+.+++.+ +.+..+|... .+.+++|+++++ .++.++. ..+ ..+++|+.|++++|.+ ..++.
T Consensus 14 ~~l~~s~-n~l~~iP~~~-----~~~~~~L~L~~N-~l~~~~~~~~~-----~~l~~L~~L~L~~N~i----~~i~~~~~ 77 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI-----PQYTAELRLNNN-EFTVLEATGIF-----KKLPQLRKINFSNNKI----TDIEEGAF 77 (220)
T ss_dssp TEEECCS-SCCSSCCSCC-----CTTCSEEECCSS-CCCEECCCCCG-----GGCTTCCEEECCSSCC----CEECTTTT
T ss_pred CEeEeCC-CCcccCccCC-----CCCCCEEEcCCC-cCCccCchhhh-----ccCCCCCEEECCCCcC----CEECHHHh
Confidence 4677765 4677776553 667899999988 6766643 334 6899999999999887 33333
Q ss_pred hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCC
Q 036801 146 DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMD 225 (388)
Q Consensus 146 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~ 225 (388)
..+++|++|+++++.... ++...+..+++|++|++..|.+ +...+ ..+..++
T Consensus 78 ~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l---~~~~~----------------------~~~~~l~ 129 (220)
T 2v70_A 78 EGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRSNRI---TCVGN----------------------DSFIGLS 129 (220)
T ss_dssp TTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTTSCC---CCBCT----------------------TSSTTCT
T ss_pred CCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCCCcC---CeECH----------------------hHcCCCc
Confidence 457788888888875433 4444677788888888865666 33222 4556678
Q ss_pred ccceEEecCCcccccc-CCCCCCCCCcCEEEEecC
Q 036801 226 NLVILRVSSCHHLINL-VPSSTSFQNLTTLEISHC 259 (388)
Q Consensus 226 ~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c 259 (388)
+|+.|+++++ .++.+ +..+..+++|+.|+++++
T Consensus 130 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 130 SVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 8888888877 34444 455677778888888764
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=8.9e-12 Score=122.88 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=71.1
Q ss_pred CccEEEEeecCccccccccc-hhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCcccccc
Q 036801 125 NLEELIVDAKYITTNKFLFS-KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVII 203 (388)
Q Consensus 125 ~L~~L~i~~~~~~~~~~~lp-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L 203 (388)
.|+.|++++|.+ ..+| .+.+++|+.|+++++.... +|. .+..+++|+.|+++.|.+ +. +
T Consensus 442 ~L~~L~Ls~n~l----~~lp~~~~l~~L~~L~Ls~N~l~~---lp~-~~~~l~~L~~L~Ls~N~l---~~-l-------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDL----TVLCHLEQLLLVTHLDLSHNRLRA---LPP-ALAALRCLEVLQASDNAL---EN-V-------- 501 (567)
T ss_dssp TCSEEECTTSCC----SSCCCGGGGTTCCEEECCSSCCCC---CCG-GGGGCTTCCEEECCSSCC---CC-C--------
T ss_pred CceEEEecCCCC----CCCcCccccccCcEeecCcccccc---cch-hhhcCCCCCEEECCCCCC---CC-C--------
Confidence 355666666554 2222 2345666666666654322 444 566777777777765666 22 1
Q ss_pred ceeeeeeccceeccccCCCCCCccceEEecCCcccccc--CCCCCCCCCcCEEEEecCCCceeecch--hhhhccCccCE
Q 036801 204 REAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINL--VPSSTSFQNLTTLEISHCNGLKNVLTF--LIAKTLVRLRE 279 (388)
Q Consensus 204 ~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~ 279 (388)
..++.+++|+.|++++| .++.+ |..+..+++|+.|+++++ .+...+.. .+...+|+|+.
T Consensus 502 ---------------p~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 502 ---------------DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp ---------------GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSE
T ss_pred ---------------cccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCc
Confidence 23445677788888776 44444 566677778888888764 45444331 12345778887
Q ss_pred Eee
Q 036801 280 MKI 282 (388)
Q Consensus 280 L~l 282 (388)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 753
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1e-09 Score=100.82 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=46.9
Q ss_pred cCCCCCCccceEEecCCccccccCC-CCCCCCCcC-EEEEecCCCceeecchhhhhccCccCEEeeccccccccc
Q 036801 219 ESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLT-TLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEI 291 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 291 (388)
..+..+++|+++++.++ ++.++. .+..+++|+ .+.+.+ .+..+... ++..+++|+++++.. +.++.+
T Consensus 244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG-DKITTL 312 (329)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS-SCCCEE
T ss_pred hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC-CccCcc
Confidence 66777888888888774 666654 456788888 888875 67777655 345778888888843 345545
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=5.9e-10 Score=91.88 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=51.1
Q ss_pred ccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc
Q 036801 64 VIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF 143 (388)
Q Consensus 64 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l 143 (388)
..+++|++|++.++ .+..+ .. +..+++|++|++++| .+....+..+ ..+++|+.|++++|.+ ..+
T Consensus 46 ~~l~~L~~L~l~~n-~l~~~--~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~Ls~N~l----~~~ 110 (168)
T 2ell_A 46 AEFVNLEFLSLINV-GLISV--SN--LPKLPKLKKLELSEN-RIFGGLDMLA-----EKLPNLTHLNLSGNKL----KDI 110 (168)
T ss_dssp GGGGGCCEEEEESS-CCCCC--SS--CCCCSSCCEEEEESC-CCCSCCCHHH-----HHCTTCCEEECBSSSC----CSS
T ss_pred HhCCCCCEEeCcCC-CCCCh--hh--hccCCCCCEEECcCC-cCchHHHHHH-----hhCCCCCEEeccCCcc----Ccc
Confidence 34555555555543 34443 11 344555556655555 2332111111 2355566666655554 222
Q ss_pred c----hhhccCccEeeccccccccccccch---hHhhcCCCccEEEEEeccC
Q 036801 144 S----KDLLCKLKCLDVEFVDELTTILSLD---DFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 144 p----~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l 188 (388)
+ ...+++|+.|+++++.... .+. ..+..+++|+.|++..+..
T Consensus 111 ~~~~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 111 STLEPLKKLECLKSLDLFNCEVTN---LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGGGGGSSCSCCCEEECCSSGGGT---STTHHHHHHTTCSSCCEETTEETTS
T ss_pred hhHHHHhcCCCCCEEEeeCCcCcc---hHHHHHHHHHhCccCcEecCCCCCh
Confidence 1 1235566666666554322 222 3556677777777633333
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.01 E-value=2e-09 Score=93.48 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred ceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccch---h
Q 036801 70 QYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK---D 146 (388)
Q Consensus 70 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~---~ 146 (388)
+.++..+ ..+..++... .++|++|+++++ .++.+++..+ ..+++|++|++++|.+ ..++. .
T Consensus 22 ~~v~c~~-~~l~~ip~~~-----~~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~L~~N~l----~~i~~~~~~ 85 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGI-----PTNAQILYLHDN-QITKLEPGVF-----DSLINLKELYLGSNQL----GALPVGVFD 85 (229)
T ss_dssp TEEECTT-SCCSSCCSCC-----CTTCSEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----CCCCTTTTT
T ss_pred CEeEccC-CCcCccCCCC-----CCCCCEEEcCCC-ccCccCHHHh-----hCccCCcEEECCCCCC----CCcChhhcc
Confidence 3444433 2344444442 455666666555 3444433322 3455555555555554 22222 2
Q ss_pred hccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCc
Q 036801 147 LLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDN 226 (388)
Q Consensus 147 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~ 226 (388)
.+++|+.|+++++.... ++...+..+++|+.|++..|.+ + .+| ..+..+++
T Consensus 86 ~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l---~-~lp----------------------~~~~~l~~ 136 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTV---LPSAVFDRLVHLKELFMCCNKL---T-ELP----------------------RGIERLTH 136 (229)
T ss_dssp TCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---C-SCC----------------------TTGGGCTT
T ss_pred cCCCcCEEECCCCcCCc---cChhHhCcchhhCeEeccCCcc---c-ccC----------------------cccccCCC
Confidence 23445555554442211 2333445556666666644555 2 222 23334556
Q ss_pred cceEEecCCccccccCC-CCCCCCCcCEEEEec
Q 036801 227 LVILRVSSCHHLINLVP-SSTSFQNLTTLEISH 258 (388)
Q Consensus 227 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 258 (388)
|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus 137 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 137 LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 666666555 3344432 234555666666654
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=1.1e-09 Score=97.39 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=106.2
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..+++|++|++++| .++.+ + .++ .+++|++|++++| .+..++. +..+++|+.|+++++ ++..
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l-~-~l~---~l~~L~~L~L~~N-~i~~~~~----------l~~l~~L~~L~L~~N-~l~~ 99 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSL-A-GMQ---FFTNLKELHLSHN-QISDLSP----------LKDLTKLEELSVNRN-RLKN 99 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCC-T-TGG---GCTTCCEEECCSS-CCCCCGG----------GTTCSSCCEEECCSS-CCSC
T ss_pred hhcCcCcEEECcCC-Ccccc-h-HHh---hCCCCCEEECCCC-ccCCChh----------hccCCCCCEEECCCC-ccCC
Confidence 35678899999886 46655 3 566 7899999999988 4555433 457889999999874 6777
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhccCccEeecccccc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLCKLKCLDVEFVDE 161 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~~L~~L~l~~~~~ 161 (388)
++... .++|+.|++++| .++.++. + ..+++|+.|++++|.+. .+ +...+++|+.|+++++..
T Consensus 100 l~~~~-----~~~L~~L~L~~N-~l~~~~~--l-----~~l~~L~~L~Ls~N~i~----~~~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 100 LNGIP-----SACLSRLFLDNN-ELRDTDS--L-----IHLKNLEILSIRNNKLK----SIVMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CTTCC-----CSSCCEEECCSS-CCSBSGG--G-----TTCTTCCEEECTTSCCC----BCGGGGGCTTCCEEECTTSCC
T ss_pred cCccc-----cCcccEEEccCC-ccCCChh--h-----cCcccccEEECCCCcCC----CChHHccCCCCCEEECCCCcC
Confidence 66543 288999999888 6665542 2 57889999999988873 33 345688999999988764
Q ss_pred ccccccchhHhhcCCCccEEEEEeccC
Q 036801 162 LTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
.. . ..+..+++|+.|++..+.+
T Consensus 163 ~~---~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 163 TN---T--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CB---C--TTSTTCCCCCEEEEEEEEE
T ss_pred cc---h--HHhccCCCCCEEeCCCCcc
Confidence 43 2 3567888999999955555
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.96 E-value=6.4e-10 Score=89.72 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=15.7
Q ss_pred ccCccEeeccccccccccccch---hHhhcCCCccEEEE
Q 036801 148 LCKLKCLDVEFVDELTTILSLD---DFLQRFHTLKVLQI 183 (388)
Q Consensus 148 l~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~L~~L~l 183 (388)
+++|++|+++++.... .+. ..+..+++|+.|++
T Consensus 112 l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 112 LENLKSLDLFNCEVTN---LNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTCGGGG---STTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEeCcCCcccc---hHHHHHHHHHHCCCcccccC
Confidence 4555555555543221 221 34555666665543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=3.6e-09 Score=87.06 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=99.0
Q ss_pred CCCcccEEeEecCCCCc-ccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLR-CLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~-~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..++|++|++++|. ++ ...|..+. .+++|++|++++|. +..+ .. +..+++|++|++.++ .+..
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~---~l~~L~~L~l~~n~-l~~~-~~---------~~~l~~L~~L~Ls~N-~l~~ 85 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTA---EFVNLEFLSLINVG-LISV-SN---------LPKLPKLKKLELSEN-RIFG 85 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCG---GGGGCCEEEEESSC-CCCC-SS---------CCCCSSCCEEEEESC-CCCS
T ss_pred CcccCCEEECCCCC-CChhhHHHHHH---hCCCCCEEeCcCCC-CCCh-hh---------hccCCCCCEEECcCC-cCch
Confidence 45789999999976 44 22466667 89999999999984 6665 22 678999999999975 5766
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccch------hhccCccEee
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSK------DLLCKLKCLD 155 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~------~~l~~L~~L~ 155 (388)
..+.. ...+++|++|++++| .++.++. ..+ ..+++|+.|++++|.+ ..++. ..+++|++|+
T Consensus 86 ~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~l-----~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 86 GLDML--AEKLPNLTHLNLSGN-KLKDISTLEPL-----KKLECLKSLDLFNCEV----TNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCCHH--HHHCTTCCEEECBSS-SCCSSGGGGGG-----SSCSCCCEEECCSSGG----GTSTTHHHHHHTTCSSCCEET
T ss_pred HHHHH--HhhCCCCCEEeccCC-ccCcchhHHHH-----hcCCCCCEEEeeCCcC----cchHHHHHHHHHhCccCcEec
Confidence 44432 456999999999998 6766553 223 5789999999999887 33333 4588999999
Q ss_pred cccccccc
Q 036801 156 VEFVDELT 163 (388)
Q Consensus 156 l~~~~~~~ 163 (388)
++++...+
T Consensus 154 l~~n~~~~ 161 (168)
T 2ell_A 154 GYDREDQE 161 (168)
T ss_dssp TEETTSCB
T ss_pred CCCCChhh
Confidence 99986543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=3.9e-09 Score=87.63 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=17.7
Q ss_pred cccccccceEecccccccccccCCCcccccCCCccEEEeecC
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRC 104 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 104 (388)
+..+++|++|+++++ .+..+++.. +..+++|++|++++|
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGL--DQALPDLTELILTNN 98 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCH--HHHCTTCCEEECCSC
T ss_pred cccCCCCCEEECCCC-cccccCcch--hhcCCCCCEEECCCC
Confidence 334455555555442 344443331 234455555555544
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.4e-08 Score=93.29 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=64.7
Q ss_pred CCCccEEEEEeccCCCCceeecCccccccce-eeeee--ccceeccccCCCCCCccc-eEEecCCccccccCC-CCCCCC
Q 036801 175 FHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY--DMKYILKHESSSIMDNLV-ILRVSSCHHLINLVP-SSTSFQ 249 (388)
Q Consensus 175 l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~~l~~l~~L~-~L~l~~c~~l~~l~~-~~~~~~ 249 (388)
+++|+.+++..+++ ..++.+.+.++.+ .++.+ +++.|+. ..+..+++|+ .+.+.+ .++.++. .+..++
T Consensus 225 ~~~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHNLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTTCCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcccceehH-HHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 55566666533344 3344444444433 34444 4556666 7888899999 999987 5666653 567899
Q ss_pred CcCEEEEecCCCceeecchhhhhccCccCEEee
Q 036801 250 NLTTLEISHCNGLKNVLTFLIAKTLVRLREMKI 282 (388)
Q Consensus 250 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l 282 (388)
+|+.+.+.+ +.+..++... +..+++|+++..
T Consensus 298 ~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDEL-FGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTT-TCTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhh-hcCCcchhhhcc
Confidence 999999864 5777777653 456788888753
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.83 E-value=4.5e-09 Score=84.63 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=92.0
Q ss_pred CCCcccEEeEecCCCCc-ccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 4 GIQNLTHLTFYNCMNLR-CLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 4 ~l~~L~~L~l~~~~~~~-~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..++|++|++++|. ++ ...|..++ .+++|++|++++| .+..+ .. +..+++|++|+++++ .+..
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n-~l~~~-~~---------~~~l~~L~~L~Ls~n-~i~~ 78 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTD---EFEELEFLSTINV-GLTSI-AN---------LPKLNKLKKLELSDN-RVSG 78 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCT---TCTTCCEEECTTS-CCCCC-TT---------CCCCTTCCEEECCSS-CCCS
T ss_pred CCccCeEEEccCCc-CChhHHHHHHh---hcCCCcEEECcCC-CCCCc-hh---------hhcCCCCCEEECCCC-cccc
Confidence 45789999999975 44 23466667 8999999999998 56655 22 667999999999875 5666
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecc-cccCCccccccCCccEEEEeecCccccccccc------hhhccCccEee
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFK-RTTNDLTKKVFPNLEELIVDAKYITTNKFLFS------KDLLCKLKCLD 155 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp------~~~l~~L~~L~ 155 (388)
..+.. ...+++|++|++++| .++.++. ..+ ..+++|++|++++|.+ ...+ ...+++|+.|+
T Consensus 79 ~~~~~--~~~l~~L~~L~ls~N-~i~~~~~~~~~-----~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 79 GLEVL--AEKCPNLTHLNLSGN-KIKDLSTIEPL-----KKLENLKSLDLFNCEV----TNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CTHHH--HHHCTTCCEEECTTS-CCCSHHHHGGG-----GGCTTCCEEECTTCGG----GGSTTHHHHHHHHCTTCCEET
T ss_pred hHHHH--hhhCCCCCEEECCCC-cCCChHHHHHH-----hhCCCCCEEeCcCCcc----cchHHHHHHHHHHCCCccccc
Confidence 33332 456899999999998 5665531 222 5889999999999876 3333 34578999998
Q ss_pred cc
Q 036801 156 VE 157 (388)
Q Consensus 156 l~ 157 (388)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 76
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.6e-07 Score=88.51 Aligned_cols=236 Identities=8% Similarity=0.050 Sum_probs=156.4
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCC
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTG 86 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 86 (388)
+|+.+.+.. .++.+...+|. ++ +|+.+.+.. .++.+.... +..|++|+.+++.+ +++..++..
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~---~~-~L~~i~lp~--~l~~I~~~a--------F~~c~~L~~l~l~~-n~l~~I~~~ 198 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFF---NS-TVQEIVFPS--TLEQLKEDI--------FYYCYNLKKADLSK-TKITKLPAS 198 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTT---TC-CCCEEECCT--TCCEECSST--------TTTCTTCCEEECTT-SCCSEECTT
T ss_pred CccEEEeCC--CccEECHHhcC---CC-CceEEEeCC--CccEehHHH--------hhCcccCCeeecCC-CcceEechh
Confidence 688888764 37777666666 53 688888876 577765542 55788999999975 467777766
Q ss_pred CcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhc--cCccEeeccccccccc
Q 036801 87 DVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLL--CKLKCLDVEFVDELTT 164 (388)
Q Consensus 87 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l--~~L~~L~l~~~~~~~~ 164 (388)
. +. +.+|+.+.+.. .++.+....+ ..+++|+.+++..+- ..++...+ .+|+.+.+... +.
T Consensus 199 a--F~-~~~L~~l~lp~--~l~~I~~~aF-----~~~~~L~~l~l~~~l-----~~I~~~aF~~~~L~~i~lp~~--i~- 260 (401)
T 4fdw_A 199 T--FV-YAGIEEVLLPV--TLKEIGSQAF-----LKTSQLKTIEIPENV-----STIGQEAFRESGITTVKLPNG--VT- 260 (401)
T ss_dssp T--TT-TCCCSEEECCT--TCCEECTTTT-----TTCTTCCCEECCTTC-----CEECTTTTTTCCCSEEEEETT--CC-
T ss_pred h--Ee-ecccCEEEeCC--chheehhhHh-----hCCCCCCEEecCCCc-----cCccccccccCCccEEEeCCC--cc-
Confidence 4 33 68899988863 4777777776 678889988887631 22333322 57888888432 22
Q ss_pred cccchhHhhcCCCccEEEEEeccCC-CCceeecCccccccce-eeeee--ccceeccccCCCCCCccceEEecCCccccc
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYW-LPKEKVENGVEVIIRE-AYNCY--DMKYILKHESSSIMDNLVILRVSSCHHLIN 240 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~ 240 (388)
.++...+.++++|+.+.+..+... .+...++.+.+.+..+ ..+.+ .++.|.. ..+..+++|+.+.+... ++.
T Consensus 261 -~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~L~~l~lp~~--l~~ 336 (401)
T 4fdw_A 261 -NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ-GLLGGNRKVTQLTIPAN--VTQ 336 (401)
T ss_dssp -EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT-TTTTTCCSCCEEEECTT--CCE
T ss_pred -EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh-hhhcCCCCccEEEECcc--ccE
Confidence 244457788899999988444330 0012456666655554 45666 6777777 88889999999999653 555
Q ss_pred cCC-CCCCCCCcCEEEEecCCCceeecchhhhhcc-CccCEEeecc
Q 036801 241 LVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTL-VRLREMKIES 284 (388)
Q Consensus 241 l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~ 284 (388)
+.. .+..+ +|+.+.+.+. .+..+....+ ..+ .+++.|.+..
T Consensus 337 I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F-~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGT-TPPQVFEKVW-YGFPDDITVIRVPA 379 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCS-SCCBCCCSSC-CCSCTTCCEEEECG
T ss_pred EcHHhCCCC-CCCEEEEcCC-CCcccccccc-cCCCCCccEEEeCH
Confidence 544 45667 9999999864 4444444322 234 4678888854
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=1.1e-08 Score=84.97 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=96.8
Q ss_pred cccccceeeccccccccEeeecccccccccccccc-cccceEecccccccccccCCCcccccCCCccEEEeecCCCceEe
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIF-PRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVK 110 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 110 (388)
.+++|++|++++| .+..++. +..+ ++|++|+++++ .+..+ .. +..+++|++|++++| .++.+
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~----------~~~~~~~L~~L~Ls~N-~l~~~--~~--l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIEN----------LGATLDQFDAIDFSDN-EIRKL--DG--FPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCC----------GGGGTTCCSEEECCSS-CCCEE--CC--CCCCSSCCEEECCSS-CCCEE
T ss_pred CcCCceEEEeeCC-CCchhHH----------hhhcCCCCCEEECCCC-CCCcc--cc--cccCCCCCEEECCCC-ccccc
Confidence 6888999999998 5665532 3334 49999999975 67776 22 667999999999998 67777
Q ss_pred cccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeeccccccccccccchh---HhhcCCCccEEEE
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDELTTILSLDD---FLQRFHTLKVLQI 183 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~L~~L~l 183 (388)
++..+ ..+++|++|++++|.+ ..+| ...+++|+.|+++++.... .+.. .+..+++|+.|++
T Consensus 80 ~~~~~-----~~l~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 80 GEGLD-----QALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVTN---KKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CSCHH-----HHCTTCCEEECCSCCC----CCGGGGGGGGGCTTCCEEECCSSGGGG---STTHHHHHHHHCTTCSEETT
T ss_pred Ccchh-----hcCCCCCEEECCCCcC----CcchhhHhhhcCCCCCEEEecCCCCCC---cHhHHHHHHHHCCccceeCC
Confidence 76554 5899999999999987 3444 3458899999999986543 3432 5788999999999
Q ss_pred EeccC
Q 036801 184 EGYNY 188 (388)
Q Consensus 184 ~~~~l 188 (388)
..+..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 44443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.80 E-value=2.5e-08 Score=83.98 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=67.6
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
++++++++ .++.+ |..+. .+|++|+++++ .+..++.... +..+++|++|++++ +.+..+.+..
T Consensus 11 ~~l~~s~~-~l~~i-p~~~~-----~~l~~L~l~~n-~i~~~~~~~~-------~~~l~~L~~L~Ls~-N~l~~~~~~~- 73 (192)
T 1w8a_A 11 TTVDCTGR-GLKEI-PRDIP-----LHTTELLLNDN-ELGRISSDGL-------FGRLPHLVKLELKR-NQLTGIEPNA- 73 (192)
T ss_dssp TEEECTTS-CCSSC-CSCCC-----TTCSEEECCSC-CCCSBCCSCS-------GGGCTTCCEEECCS-SCCCCBCTTT-
T ss_pred CEEEcCCC-CcCcC-ccCCC-----CCCCEEECCCC-cCCccCCccc-------cccCCCCCEEECCC-CCCCCcCHhH-
Confidence 66777764 45554 44333 26888888887 4555543211 45677888888876 3677665554
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|++|+++++ .++.++...+ ..+++|++|++++|.+
T Consensus 74 -~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 74 -FEGASHIQELQLGEN-KIKEISNKMF-----LGLHQLKTLNLYDNQI 114 (192)
T ss_dssp -TTTCTTCCEEECCSC-CCCEECSSSS-----TTCTTCCEEECCSSCC
T ss_pred -cCCcccCCEEECCCC-cCCccCHHHh-----cCCCCCCEEECCCCcC
Confidence 566788888888777 5666665544 4677777777777765
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=9.6e-07 Score=83.12 Aligned_cols=259 Identities=8% Similarity=0.044 Sum_probs=146.0
Q ss_pred ccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecc
Q 036801 33 FVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFK 112 (388)
Q Consensus 33 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 112 (388)
+..++.+.+-+ +++.+.... +.. .+|+.+.+.. +++.+.... +.. .+|+.+.+.. .++.+..
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~a--------F~~-~~L~~i~l~~--~i~~I~~~a--F~~-~~L~~i~lp~--~l~~I~~ 173 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDA--------FRN-SQIAKVVLNE--GLKSIGDMA--FFN-STVQEIVFPS--TLEQLKE 173 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTT--------TTT-CCCSEEECCT--TCCEECTTT--TTT-CCCCEEECCT--TCCEECS
T ss_pred cCCccEEEECC--ccCEehHhh--------ccc-CCccEEEeCC--CccEECHHh--cCC-CCceEEEeCC--CccEehH
Confidence 44555555544 355544431 223 3577777653 366665553 223 3577777754 5666665
Q ss_pred cccCCccccccCCccEEEEeecCccccccccchhh--ccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCC
Q 036801 113 RTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDL--LCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWL 190 (388)
Q Consensus 113 ~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 190 (388)
..+ ..+++|+.+++.++.+ ..++.+. +.+|+.+.+... +. .+....+.++++|+.+.+.. ++
T Consensus 174 ~aF-----~~c~~L~~l~l~~n~l----~~I~~~aF~~~~L~~l~lp~~--l~--~I~~~aF~~~~~L~~l~l~~-~l-- 237 (401)
T 4fdw_A 174 DIF-----YYCYNLKKADLSKTKI----TKLPASTFVYAGIEEVLLPVT--LK--EIGSQAFLKTSQLKTIEIPE-NV-- 237 (401)
T ss_dssp STT-----TTCTTCCEEECTTSCC----SEECTTTTTTCCCSEEECCTT--CC--EECTTTTTTCTTCCCEECCT-TC--
T ss_pred HHh-----hCcccCCeeecCCCcc----eEechhhEeecccCEEEeCCc--hh--eehhhHhhCCCCCCEEecCC-Cc--
Confidence 555 5677777777766554 3344433 457777777532 22 24445677888888888732 23
Q ss_pred CceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCC----ceee
Q 036801 191 PKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNG----LKNV 265 (388)
Q Consensus 191 ~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~----l~~~ 265 (388)
..++. ..+.. .+|+.+.+.+ .++.++. .+..+++|+.+.+.+... ...+
T Consensus 238 --~~I~~---------------------~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 238 --STIGQ---------------------EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp --CEECT---------------------TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred --cCccc---------------------ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 22232 33333 5677777743 3444433 446777777777764211 1134
Q ss_pred cchhhhhccCccCEEeeccccccccccccCCCCCccccccceecccccceeecccccccceeccCcccccCCCcceEecc
Q 036801 266 LTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVD 345 (388)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 345 (388)
+.. +...+++|+.+.+.+ .++.+.... +..+++|+.+.+.. +++.+.... |..+ +|+.+.+.
T Consensus 292 ~~~-aF~~c~~L~~l~l~~--~i~~I~~~a-----------F~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~ 353 (401)
T 4fdw_A 292 HPY-CLEGCPKLARFEIPE--SIRILGQGL-----------LGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVE 353 (401)
T ss_dssp CTT-TTTTCTTCCEECCCT--TCCEECTTT-----------TTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEEC
T ss_pred CHH-HhhCCccCCeEEeCC--ceEEEhhhh-----------hcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEc
Confidence 433 345677888888753 344442211 22346777777743 477776654 4567 89999988
Q ss_pred CCcccccCCCC-CcCC-CCcceEEEec
Q 036801 346 DCTNMEIFSRG-ELST-PMLHKVQLNM 370 (388)
Q Consensus 346 ~c~~l~~l~~~-~~~~-~~L~~l~l~~ 370 (388)
+. .+..++.+ +..+ ..++.+.+..
T Consensus 354 ~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 354 GT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC-CCcccccccccCCCCCccEEEeCH
Confidence 74 44444433 2334 4788888885
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=2.1e-08 Score=83.20 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=88.5
Q ss_pred ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801 8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD 87 (388)
Q Consensus 8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 87 (388)
.+.++++++ +++.+ |.. -.++|++|+++++ .+..++... +..+++|++|++.++ .+..++...
T Consensus 9 ~~~l~~~~~-~l~~~-p~~-----~~~~l~~L~l~~n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~ 71 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSV-PTG-----IPSSATRLELESN-KLQSLPHGV--------FDKLTQLTKLSLSQN-QIQSLPDGV 71 (177)
T ss_dssp TTEEECCSS-CCSSC-CTT-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTT
T ss_pred CCEEEecCC-CCccC-CCC-----CCCCCcEEEeCCC-cccEeCHHH--------hcCcccccEEECCCC-cceEeChhH
Confidence 467777764 45554 332 3467899999987 465554431 456888999999874 677777654
Q ss_pred cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchh---hccCccEeecccccc
Q 036801 88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKD---LLCKLKCLDVEFVDE 161 (388)
Q Consensus 88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~---~l~~L~~L~l~~~~~ 161 (388)
+..+++|++|+++++ .++.++...+ ..+++|++|++++|.+ ..+|.. .+++|++|+++++..
T Consensus 72 --~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 --FDKLTKLTILYLHEN-KLQSLPNGVF-----DKLTQLKELALDTNQL----KSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCC----SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --ccCCCccCEEECCCC-CccccCHHHh-----hCCcccCEEECcCCcc----eEeCHHHhcCCcccCEEEecCCCe
Confidence 567889999999887 6666666554 5788999999998877 455543 367899999988753
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.75 E-value=3.2e-08 Score=83.41 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=61.3
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.+++++ +.++.+ |..+ .++|++|+++++ .+..++.. +..+++|+.|++++ +.+..++...
T Consensus 13 ~~l~~~~-~~l~~i-p~~~-----~~~l~~L~L~~n-~i~~ip~~---------~~~l~~L~~L~Ls~-N~i~~i~~~~- 73 (193)
T 2wfh_A 13 TVVRCSN-KGLKVL-PKGI-----PRDVTELYLDGN-QFTLVPKE---------LSNYKHLTLIDLSN-NRISTLSNQS- 73 (193)
T ss_dssp TEEECTT-SCCSSC-CSCC-----CTTCCEEECCSS-CCCSCCGG---------GGGCTTCCEEECCS-SCCCCCCTTT-
T ss_pred CEEEcCC-CCCCcC-CCCC-----CCCCCEEECCCC-cCchhHHH---------hhcccCCCEEECCC-CcCCEeCHhH-
Confidence 4556655 345544 3322 235777777776 45555432 55677777777775 3566666554
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|++|+++++ .++.++...+ ..+++|+.|++++|.+
T Consensus 74 -f~~l~~L~~L~Ls~N-~l~~i~~~~f-----~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 74 -FSNMTQLLTLILSYN-RLRCIPPRTF-----DGLKSLRLLSLHGNDI 114 (193)
T ss_dssp -TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSSCC
T ss_pred -ccCCCCCCEEECCCC-ccCEeCHHHh-----CCCCCCCEEECCCCCC
Confidence 556777777777766 4555555444 4666777777766665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.73 E-value=3.1e-08 Score=83.53 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=87.6
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|+++++ .++.+ |..+. .+++|++|++++| .+..++... +..+++|++|++++ +.+..+++
T Consensus 31 ~~l~~L~L~~n-~i~~i-p~~~~---~l~~L~~L~Ls~N-~i~~i~~~~--------f~~l~~L~~L~Ls~-N~l~~i~~ 95 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLV-PKELS---NYKHLTLIDLSNN-RISTLSNQS--------FSNMTQLLTLILSY-NRLRCIPP 95 (193)
T ss_dssp TTCCEEECCSS-CCCSC-CGGGG---GCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCBCCT
T ss_pred CCCCEEECCCC-cCchh-HHHhh---cccCCCEEECCCC-cCCEeCHhH--------ccCCCCCCEEECCC-CccCEeCH
Confidence 58999999986 46655 56787 8999999999998 566655432 56799999999997 47888887
Q ss_pred CCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 86 GDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
.. +..+++|++|+++++ .++.++...+ ..+++|+.|++.+|..
T Consensus 96 ~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 96 RT--FDGLKSLRLLSLHGN-DISVVPEGAF-----NDLSALSHLAIGANPL 138 (193)
T ss_dssp TT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSSCE
T ss_pred HH--hCCCCCCCEEECCCC-CCCeeChhhh-----hcCccccEEEeCCCCe
Confidence 65 778999999999998 6777777655 5789999999988765
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.70 E-value=1e-06 Score=82.75 Aligned_cols=126 Identities=12% Similarity=-0.016 Sum_probs=59.0
Q ss_pred cCCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCC
Q 036801 219 ESSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDD 297 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~ 297 (388)
..+..+..|+.+.+... ...+. ..+..+..++.+..... .++.. ....+.+|+++.+.+ .++.+... +
T Consensus 247 ~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~--a 315 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE--A 315 (394)
T ss_dssp STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT--T
T ss_pred ccccccccceeEEcCCC--cceeeccccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh--h
Confidence 44555566666666442 11221 22344455555544321 12221 223455666666642 23322111 1
Q ss_pred CCccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCC-CcCCCCcceEEEe
Q 036801 298 DDHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRG-ELSTPMLHKVQLN 369 (388)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~ 369 (388)
+..+++|+.+.+.. +++.+.... +..+.+|+.+.+.. +++.+... +..|++|+.+.+.
T Consensus 316 ---------F~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 ---------FESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ---------TTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred ---------hcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 11235566666532 355555443 35566677766643 24454433 3356777777765
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=5.4e-08 Score=81.96 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=86.3
Q ss_pred CcccEEeEecCCCCcccccc-cccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 6 QNLTHLTFYNCMNLRCLFSS-STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
+++++|+++++ .++.+.+. .++ .+++|++|++++| .+..+.... +..+++|++|++++ +++..++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~~~ 94 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFG---RLPHLVKLELKRN-QLTGIEPNA--------FEGASHIQELQLGE-NKIKEIS 94 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGG---GCTTCCEEECCSS-CCCCBCTTT--------TTTCTTCCEEECCS-CCCCEEC
T ss_pred CCCCEEECCCC-cCCccCCccccc---cCCCCCEEECCCC-CCCCcCHhH--------cCCcccCCEEECCC-CcCCccC
Confidence 38999999986 56766554 367 8999999999998 566653321 66799999999997 4788887
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+.. +..+++|++|+++++ .++.+.+..+ ..+++|++|++++|..
T Consensus 95 ~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 95 NKM--FLGLHQLKTLNLYDN-QISCVMPGSF-----EHLNSLTSLNLASNPF 138 (192)
T ss_dssp SSS--STTCTTCCEEECCSS-CCCEECTTSS-----TTCTTCCEEECTTCCB
T ss_pred HHH--hcCCCCCCEEECCCC-cCCeeCHHHh-----hcCCCCCEEEeCCCCc
Confidence 765 677999999999998 6766655554 5789999999988776
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=6.2e-08 Score=95.46 Aligned_cols=121 Identities=11% Similarity=0.044 Sum_probs=63.2
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccc
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRT 114 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 114 (388)
.|+.|++++| .+..++. +..+++|+.|+++++ .+..+|.. ++.+++|+.|++++| .++.+| ..
T Consensus 442 ~L~~L~Ls~n-~l~~lp~----------~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N-~l~~lp-~l 504 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH----------LEQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDN-ALENVD-GV 504 (567)
T ss_dssp TCSEEECTTS-CCSSCCC----------GGGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCG-GG
T ss_pred CceEEEecCC-CCCCCcC----------ccccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCC-CCCCCc-cc
Confidence 3566666665 3444332 345666666666653 45554433 455666666666665 444444 22
Q ss_pred cCCccccccCCccEEEEeecCcccccccc--c--hhhccCccEeeccccccccccccchhHhhcCCCccEEE
Q 036801 115 TNDLTKKVFPNLEELIVDAKYITTNKFLF--S--KDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQ 182 (388)
Q Consensus 115 ~~~~~~~~l~~L~~L~i~~~~~~~~~~~l--p--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 182 (388)
..+++|+.|++++|.+ ..+ | .+.+++|+.|+++++............+..+++|+.|+
T Consensus 505 ------~~l~~L~~L~Ls~N~l----~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ------ANLPRLQELLLCNNRL----QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ------TTCSSCCEEECCSSCC----CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ------CCCCCCcEEECCCCCC----CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3566666666666655 222 2 23466666666666543220001112344577777765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=3.2e-09 Score=90.02 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=87.7
Q ss_pred cccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCC
Q 036801 26 STVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCP 105 (388)
Q Consensus 26 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 105 (388)
.++ .+++|++|++++| .+..++ . +..+++|+.|++.++ .+..++.. ...+++|++|++++|
T Consensus 43 ~~~---~l~~L~~L~ls~n-~l~~l~-~---------~~~l~~L~~L~l~~n-~l~~l~~~---~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 43 TLS---TLKACKHLALSTN-NIEKIS-S---------LSGMENLRILSLGRN-LIKKIENL---DAVADTLEELWISYN- 103 (198)
T ss_dssp HHH---HTTTCSEEECSEE-EESCCC-C---------HHHHTTCCEEEEEEE-EECSCSSH---HHHHHHCSEEEEEEE-
T ss_pred HHh---cCCCCCEEECCCC-CCcccc-c---------cccCCCCCEEECCCC-Ccccccch---hhcCCcCCEEECcCC-
Confidence 566 7889999999888 466654 2 667889999999874 57766543 445788999999888
Q ss_pred CceEecccccCCccccccCCccEEEEeecCccccccccc----hhhccCccEeecccccccccc--------ccchhHhh
Q 036801 106 GFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS----KDLLCKLKCLDVEFVDELTTI--------LSLDDFLQ 173 (388)
Q Consensus 106 ~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp----~~~l~~L~~L~l~~~~~~~~~--------~~~~~~~~ 173 (388)
.++.++ .. ..+++|+.|++++|.+ ..++ ...+++|++|+++++.... . ......+.
T Consensus 104 ~l~~l~-~~------~~l~~L~~L~l~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 104 QIASLS-GI------EKLVNLRVLYMSNNKI----TNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEYRIEVVK 171 (198)
T ss_dssp ECCCHH-HH------HHHHHSSEEEESEEEC----CCHHHHHHHTTTTTCSEEEECSCHHHH-HHHTTTTHHHHHHHHHH
T ss_pred cCCcCC-cc------ccCCCCCEEECCCCcC----CchhHHHHHhcCCCCCEEEecCCcccc-ccccccchHHHHHHHHH
Confidence 565554 22 4788899999988876 3333 2457889999998875432 1 01123467
Q ss_pred cCCCccEEE
Q 036801 174 RFHTLKVLQ 182 (388)
Q Consensus 174 ~l~~L~~L~ 182 (388)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 788888776
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=1.8e-07 Score=77.42 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCCccceEEecCCccccccCCC-CCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccc
Q 036801 221 SSIMDNLVILRVSSCHHLINLVPS-STSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESC 285 (388)
Q Consensus 221 l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 285 (388)
+..+++|+.|+++++ .++.+++. +..+++|++|+++++ .+..++.. ....+++|++|++.++
T Consensus 72 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 72 FDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCC
Confidence 345556666666655 33344332 345566666666543 44444432 2234556666666543
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.52 E-value=1.1e-07 Score=96.54 Aligned_cols=109 Identities=18% Similarity=0.088 Sum_probs=78.5
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccc
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTS 82 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 82 (388)
..+++|+.|++++|. +..+ |..++ .+++|++|+|++| .+..++.. +..+++|++|+|+++ ++..
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l-~~~~~---~l~~L~~L~Ls~N-~l~~lp~~---------~~~l~~L~~L~Ls~N-~l~~ 284 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNI-SANIF---KYDFLTRLYLNGN-SLTELPAE---------IKNLSNLRVLDLSHN-RLTS 284 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCC-CGGGG---GCCSCSCCBCTTS-CCSCCCGG---------GGGGTTCCEEECTTS-CCSS
T ss_pred ccCCCCcEEECCCCC-CCCC-Chhhc---CCCCCCEEEeeCC-cCcccChh---------hhCCCCCCEEeCcCC-cCCc
Confidence 456788888888765 4444 55566 6888888888887 56666654 667888888888864 5776
Q ss_pred ccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcc
Q 036801 83 FSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYIT 137 (388)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 137 (388)
++.. ++.+++|++|++++| .+..+|... ..+++|+.|++++|.+.
T Consensus 285 lp~~---~~~l~~L~~L~L~~N-~l~~lp~~~------~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 LPAE---LGSCFQLKYFYFFDN-MVTTLPWEF------GNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSS---GGGGTTCSEEECCSS-CCCCCCSST------TSCTTCCCEECTTSCCC
T ss_pred cChh---hcCCCCCCEEECCCC-CCCccChhh------hcCCCccEEeCCCCccC
Confidence 6544 567888888888887 666676654 57888888888887764
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=3.3e-08 Score=81.17 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=49.1
Q ss_pred ccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCccccc----CCCccEEEeecCCCceEe
Q 036801 35 RLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLE----FPSLKELWISRCPGFMVK 110 (388)
Q Consensus 35 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~ 110 (388)
+|++||+++|. +++ . ....+..|++|+.|++.+|..+++..... +.. +++|++|++++|+++++.
T Consensus 62 ~L~~LDLs~~~-Itd---~-----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IMS---I-----GFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CCG---G-----GGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccH---H-----HHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHH
Confidence 47777777763 322 1 11224567777777777776666543332 222 346777777777766543
Q ss_pred cccccCCccccccCCccEEEEeecCcc
Q 036801 111 FKRTTNDLTKKVFPNLEELIVDAKYIT 137 (388)
Q Consensus 111 ~~~~~~~~~~~~l~~L~~L~i~~~~~~ 137 (388)
-.... ..+++|++|++++|..+
T Consensus 131 Gl~~L-----~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 131 GIIAL-----HHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HHHHG-----GGCTTCCEEEEESCTTC
T ss_pred HHHHH-----hcCCCCCEEECCCCCCC
Confidence 22222 35677777777776543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.45 E-value=1.5e-08 Score=85.85 Aligned_cols=107 Identities=19% Similarity=0.140 Sum_probs=81.8
Q ss_pred cccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 63 IVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 63 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
+..+++|++|+++++ .+..++ . +..+++|++|++++| .++.++... ..+++|+.|++++|.+ ..
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~--~--~~~l~~L~~L~l~~n-~l~~l~~~~------~~~~~L~~L~L~~N~l----~~ 107 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS--S--LSGMENLRILSLGRN-LIKKIENLD------AVADTLEELWISYNQI----AS 107 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC--C--HHHHTTCCEEEEEEE-EECSCSSHH------HHHHHCSEEEEEEEEC----CC
T ss_pred HhcCCCCCEEECCCC-CCcccc--c--cccCCCCCEEECCCC-Ccccccchh------hcCCcCCEEECcCCcC----Cc
Confidence 668999999999975 677765 3 677999999999998 566555433 4679999999999987 33
Q ss_pred cc-hhhccCccEeeccccccccccccch-hHhhcCCCccEEEEEeccC
Q 036801 143 FS-KDLLCKLKCLDVEFVDELTTILSLD-DFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 143 lp-~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l 188 (388)
+| ...+++|+.|+++++.... ++. ..+..+++|+.|++..|.+
T Consensus 108 l~~~~~l~~L~~L~l~~N~i~~---~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 108 LSGIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHHHSSEEEESEEECCC---HHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCccccCCCCCEEECCCCcCCc---hhHHHHHhcCCCCCEEEecCCcc
Confidence 33 3458899999999876432 222 4678899999999965666
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.44 E-value=1.5e-07 Score=95.52 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=44.0
Q ss_pred cccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccc
Q 036801 65 IFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFS 144 (388)
Q Consensus 65 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp 144 (388)
.+++|+.|+++++ .+..++.. +..+++|++|++++| .++.+|... ..+++|+.|++++|.+ ..+|
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~~~---~~~l~~L~~L~Ls~N-~l~~lp~~~------~~l~~L~~L~Ls~N~l----~~lp 286 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNISAN---IFKYDFLTRLYLNGN-SLTELPAEI------KNLSNLRVLDLSHNRL----TSLP 286 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCCGG---GGGCCSCSCCBCTTS-CCSCCCGGG------GGGTTCCEEECTTSCC----SSCC
T ss_pred cCCCCcEEECCCC-CCCCCChh---hcCCCCCCEEEeeCC-cCcccChhh------hCCCCCCEEeCcCCcC----CccC
Confidence 3444555555442 33333333 223445555555444 333333322 2444555555554444 2222
Q ss_pred h--hhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccC
Q 036801 145 K--DLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNY 188 (388)
Q Consensus 145 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 188 (388)
. +.+++|++|+++++..- .+|. .+..+++|+.|++..|.+
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~---~lp~-~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT---TLPW-EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC---CCCS-STTSCTTCCCEECTTSCC
T ss_pred hhhcCCCCCCEEECCCCCCC---ccCh-hhhcCCCccEEeCCCCcc
Confidence 2 23445555555444221 1232 244455555555533344
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.40 E-value=6.8e-07 Score=73.56 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=55.6
Q ss_pred ccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCC
Q 036801 8 LTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGD 87 (388)
Q Consensus 8 L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 87 (388)
.+.+++++ +.++.+ |.. -.++|++|++++| .+..++... +..+++|++|++.+ +++..++...
T Consensus 11 ~~~l~~s~-n~l~~i-p~~-----~~~~l~~L~L~~N-~i~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~ 73 (170)
T 3g39_A 11 GTTVDCSG-KSLASV-PTG-----IPTTTQVLYLYDN-QITKLEPGV--------FDRLTQLTRLDLDN-NQLTVLPAGV 73 (170)
T ss_dssp TTEEECTT-SCCSSC-CSC-----CCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCSEEECCS-SCCCCCCTTT
T ss_pred CCEEEeCC-CCcCcc-Ccc-----CCCCCcEEEcCCC-cCCccChhh--------hcCcccCCEEECCC-CCcCccChhh
Confidence 45566665 334444 322 1345666666666 344443221 44566666666665 3566555543
Q ss_pred cccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 88 VHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 88 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|++|+++++ .++.++...+ ..+++|+.|++++|..
T Consensus 74 --f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 74 --FDKLTQLTQLSLNDN-QLKSIPRGAF-----DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp --TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCB
T ss_pred --ccCCCCCCEEECCCC-ccCEeCHHHh-----cCCCCCCEEEeCCCCC
Confidence 445666666666665 4555554433 4556666666666544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.38 E-value=8.4e-07 Score=73.32 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=55.0
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
+.++++++ +++.+ |..+ .++|++|++++| .+..++... +..+++|++|++.+ +++..++...
T Consensus 15 ~~l~~~~n-~l~~i-P~~~-----~~~L~~L~Ls~N-~l~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~i~~~~- 76 (174)
T 2r9u_A 15 TLVNCQNI-RLASV-PAGI-----PTDKQRLWLNNN-QITKLEPGV--------FDHLVNLQQLYFNS-NKLTAIPTGV- 76 (174)
T ss_dssp SEEECCSS-CCSSC-CSCC-----CTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTT-
T ss_pred cEEEeCCC-CCCcc-CCCc-----CCCCcEEEeCCC-CccccCHHH--------hcCCcCCCEEECCC-CCCCccChhH-
Confidence 45555553 34444 3221 245666666666 344443221 44566666666665 3566655543
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|++|+++++ .+..++...+ ..+++|+.|++++|.+
T Consensus 77 -~~~l~~L~~L~L~~N-~l~~l~~~~~-----~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 77 -FDKLTQLTQLDLNDN-HLKSIPRGAF-----DNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCSEEECCSSCB
T ss_pred -hCCcchhhEEECCCC-ccceeCHHHh-----ccccCCCEEEeCCCCc
Confidence 445666666666665 4555554433 4566666666666554
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=2e-05 Score=73.86 Aligned_cols=302 Identities=11% Similarity=0.030 Sum_probs=172.4
Q ss_pred cCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecc-------
Q 036801 3 CGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMY------- 75 (388)
Q Consensus 3 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~------- 75 (388)
.+|.+|+.+.+.. .++.+...+|. ++++|+.+++.+ +++.+.... ...+.+|+.+.+.
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~a--------F~~c~~L~~i~~p~~l~~i~ 132 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIGEFAFE---NCSKLEIINIPD--SVKMIGRCT--------FSGCYALKSILLPLMLKSIG 132 (394)
T ss_dssp TTCTTEEEEECCT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTT--------TTTCTTCCCCCCCTTCCEEC
T ss_pred hCCCCceEEEeCC--CccCcchhHhh---CCCCCcEEEeCC--CceEccchh--------hcccccchhhcccCceeeec
Confidence 5688999999963 47777777777 899999999965 366655432 2223333332221
Q ss_pred -----cc--------cccccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccc
Q 036801 76 -----DL--------EKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFL 142 (388)
Q Consensus 76 -----~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~ 142 (388)
+| ..+..+.... +..+.+|+.+.+.+ .+..+....+ ..+.+|+.+.+..+- +.+..
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~i~~~a--F~~c~~L~~i~l~~--~~~~I~~~~F-----~~c~~L~~i~l~~~~--~~I~~ 201 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTVIGDEA--FATCESLEYVSLPD--SMETLHNGLF-----SGCGKLKSIKLPRNL--KIIRD 201 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTT--TTTCTTCCEEECCT--TCCEECTTTT-----TTCTTCCBCCCCTTC--CEECT
T ss_pred ceeeecccccccccCccccccchhh--hcccCCCcEEecCC--ccceeccccc-----cCCCCceEEEcCCCc--eEeCc
Confidence 11 1222233332 45678888888864 3455555555 577788887775531 12222
Q ss_pred cchhhccCccEeeccccccccccccchhHhhcCCCccEEEEEeccCCCCceeecCccccccce-eeeee--ccceecccc
Q 036801 143 FSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEVIIRE-AYNCY--DMKYILKHE 219 (388)
Q Consensus 143 lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-~~l~l--~l~~i~~~~ 219 (388)
.....+..|+.+.+....... .. ......+|+.+.+.. .+ ..++...+.+... ..+.+ ....+.. .
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i----~~-~~~~~~~l~~i~ip~-~~----~~i~~~~f~~~~~l~~~~~~~~~~~i~~-~ 270 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYL----GD-FALSKTGVKNIIIPD-SF----TELGKSVFYGCTDLESISIQNNKLRIGG-S 270 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEE----CT-TTTTTCCCCEEEECT-TC----CEECSSTTTTCSSCCEEEECCTTCEECS-C
T ss_pred hhhccccccceeecCCCceEe----eh-hhcccCCCceEEECC-Cc----eecccccccccccceeEEcCCCcceeec-c
Confidence 233345566666654432111 11 223345677766621 12 2233323322222 22333 4444544 5
Q ss_pred CCCCCCccceEEecCCccccccC-CCCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCC
Q 036801 220 SSSIMDNLVILRVSSCHHLINLV-PSSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDD 298 (388)
Q Consensus 220 ~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 298 (388)
.+..+..++.+...... ++ ..+..+.+|+.+.+.+ .+..+... +...+.+|+++++.+ .++.+... +
T Consensus 271 ~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~--a- 338 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEE-AFESCTSLVSIDLPY--LVEEIGKR--S- 338 (394)
T ss_dssp TTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTT--T-
T ss_pred ccccccccceeccCcee----ecccccccccccccccccc--ccceechh-hhcCCCCCCEEEeCC--cccEEhHH--h-
Confidence 66677788877765431 22 2456788899998863 56666654 345678899998853 24444211 1
Q ss_pred CccccccceecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceE
Q 036801 299 DHDAAKDEVIAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKV 366 (388)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l 366 (388)
+..+.+|+.+.+.. +++.+.... +..|++|+.+++.. .++.+......|++|+.+
T Consensus 339 --------F~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 --------FRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --------TTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred --------ccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 22357788887754 477776664 57889999999863 344444456678888876
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=0.00013 Score=68.40 Aligned_cols=303 Identities=10% Similarity=0.093 Sum_probs=151.5
Q ss_pred cccEEeEecCCCCcccccccccccccccccceeecccc--ccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 7 NLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKC--HVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 7 ~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
.|+.+.+-. .++.+...+|. ++++|+.+.+..+ ..++.+.... ...|.+|+.+.+.. ++..+.
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~---~C~~L~~i~~~~n~p~~l~~Ig~~a--------F~~c~~L~~i~~~~--~~~~I~ 129 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFY---NCTSLKRVTIQDNKPSCVKKIGRQA--------FMFCSELTDIPILD--SVTEID 129 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTT---TCTTCCEEEEGGGCCCCCCEECTTT--------TTTCTTCCBCGGGT--TCSEEC
T ss_pred cCEEEEECC--CeeEEhHHHhh---CCccCceEeecCCCCCeeeEechhh--------chhcccceeeccCC--ccceeh
Confidence 477777753 46666666677 7888888888664 2355544331 34567777766643 455665
Q ss_pred CCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccc
Q 036801 85 TGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTT 164 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~ 164 (388)
... +..+.+|+.+.+.. .+..+....+ ..+.+|+.+.+..+-. .+..... ...+|+.+.+......
T Consensus 130 ~~a--F~~c~~L~~i~lp~--~~~~I~~~~F-----~~c~~L~~i~~~~~~~--~I~~~aF-~~~~l~~i~ip~~~~~-- 195 (394)
T 4gt6_A 130 SEA--FHHCEELDTVTIPE--GVTSVADGMF-----SYCYSLHTVTLPDSVT--AIEERAF-TGTALTQIHIPAKVTR-- 195 (394)
T ss_dssp TTT--TTTCTTCCEEECCT--TCCEECTTTT-----TTCTTCCEEECCTTCC--EECTTTT-TTCCCSEEEECTTCCE--
T ss_pred hhh--hhhhcccccccccc--eeeeecccce-----ecccccccccccceee--Eeccccc-cccceeEEEECCcccc--
Confidence 554 55678888888753 3444544444 4677777777754311 1111111 1346777766542211
Q ss_pred cccchhHhhcCCCccEEEEEeccCCCCceeecCcccc--------------ccceeeeee--ccceeccccCCCCCCccc
Q 036801 165 ILSLDDFLQRFHTLKVLQIEGYNYWLPKEKVENGVEV--------------IIREAYNCY--DMKYILKHESSSIMDNLV 228 (388)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------~L~~~~l~l--~l~~i~~~~~l~~l~~L~ 228 (388)
.....+..+.++.......... ......++. ......+.+ .+..+.. ..+..+..|+
T Consensus 196 --i~~~af~~c~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~-~aF~~c~~L~ 268 (394)
T 4gt6_A 196 --IGTNAFSECFALSTITSDSESY----PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET-HAFDSCAYLA 268 (394)
T ss_dssp --ECTTTTTTCTTCCEEEECCSSS----CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT-TTTTTCSSCC
T ss_pred --cccchhhhccccceeccccccc----ccccceeecccccccccccccccccccceEEcCCcceEccc-ceeeeccccc
Confidence 1223455667777666622222 011111100 000011222 3344444 5566667777
Q ss_pred eEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccccccccCCCCCccccccce
Q 036801 229 ILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV 307 (388)
Q Consensus 229 ~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 307 (388)
.+.+.+. +..+.. .+..+++|+.+.+. +.+..++.. +...+.+|+++.+.. .++.+... + +
T Consensus 269 ~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~--a---------F 330 (394)
T 4gt6_A 269 SVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPES-VFAGCISLKSIDIPE--GITQILDD--A---------F 330 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCEEECCT--TCCEECTT--T---------T
T ss_pred EEecccc--cceecCcccccccccccccCC--CcccccCce-eecCCCCcCEEEeCC--cccEehHh--H---------h
Confidence 7776432 222222 34566677777764 345555554 234566777777643 23333211 1 2
Q ss_pred ecccccceeecccccccceeccCcccccCCCcceEeccCCcccccCCCCCcCCCCcceEEEe
Q 036801 308 IAFSKLNELRLLNLESLRSFYSGYCALNFPSLERLLVDDCTNMEIFSRGELSTPMLHKVQLN 369 (388)
Q Consensus 308 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~ 369 (388)
..+.+|+.+.+.. +++.+.... |..|.+|+.+++.+.... + .....+.+|+.+.+.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred hCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 2345666666632 355554442 456677777777653211 1 122345566666554
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=3.6e-07 Score=74.94 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=53.7
Q ss_pred CccceEEecCCcccccc-CCCCCCCCCcCEEEEecCCCceeecchhhhhc---cCccCEEeeccccccccccccCCCCCc
Q 036801 225 DNLVILRVSSCHHLINL-VPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT---LVRLREMKIESCAMITEIVLADDDDDH 300 (388)
Q Consensus 225 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~i~~~~~~~~~ 300 (388)
-.|++|++++|. +++. ...+..+++|+.|++++|..+++.....+... .++|++|++++|..+++-....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 367888888876 4332 22345777888888888877776554433321 3467777777777666432211
Q ss_pred cccccceecccccceeecccccccce
Q 036801 301 DAAKDEVIAFSKLNELRLLNLESLRS 326 (388)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 326 (388)
...+++|++|++++|+.+++
T Consensus 135 ------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 ------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ------GGGCTTCCEEEEESCTTCCC
T ss_pred ------HhcCCCCCEEECCCCCCCCc
Confidence 11246666666666665554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.29 E-value=1.2e-06 Score=72.38 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=70.1
Q ss_pred CcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccC
Q 036801 6 QNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFST 85 (388)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 85 (388)
++|++|+++++ .++.+.|..++ ++++|++|+|++| ++..++... +..+++|+.|++.+ +.+..++.
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~--------~~~l~~L~~L~L~~-N~l~~l~~ 98 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGV--------FDKLTQLTQLDLND-NHLKSIPR 98 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhH--------hCCcchhhEEECCC-CccceeCH
Confidence 68999999985 57777777788 8999999999999 677766541 45799999999997 57888887
Q ss_pred CCcccccCCCccEEEeecCC
Q 036801 86 GDVHMLEFPSLKELWISRCP 105 (388)
Q Consensus 86 ~~~~~~~~~~L~~L~l~~c~ 105 (388)
.. +..+++|+.|++++++
T Consensus 99 ~~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 99 GA--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TT--TTTCTTCSEEECCSSC
T ss_pred HH--hccccCCCEEEeCCCC
Confidence 64 6789999999999984
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.28 E-value=1.3e-06 Score=71.84 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccccccccccc
Q 036801 5 IQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFS 84 (388)
Q Consensus 5 l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 84 (388)
.++|++|+++++ .++.+.|..++ .+++|++|++++| ++..++... +..+++|++|++.+ +++..++
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~--------f~~l~~L~~L~L~~-N~l~~~~ 94 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGV--------FDKLTQLTQLSLND-NQLKSIP 94 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCC
T ss_pred CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhh--------ccCCCCCCEEECCC-CccCEeC
Confidence 368999999985 67777777788 8999999999998 577766542 45799999999997 5788888
Q ss_pred CCCcccccCCCccEEEeecCC
Q 036801 85 TGDVHMLEFPSLKELWISRCP 105 (388)
Q Consensus 85 ~~~~~~~~~~~L~~L~l~~c~ 105 (388)
... +..+++|++|++++++
T Consensus 95 ~~~--~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 95 RGA--FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTT--TTTCTTCCEEECCSSC
T ss_pred HHH--hcCCCCCCEEEeCCCC
Confidence 765 6789999999999884
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=2.6e-06 Score=78.47 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=80.9
Q ss_pred cEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc
Q 036801 9 THLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV 88 (388)
Q Consensus 9 ~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 88 (388)
..+++++.++++.+ |. ++ .+++|++|+|+++..+..++... +..+++|+.|+|++ +++..+++..
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~---~~~~L~~L~l~~~n~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~~~- 75 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LP---GAENLTELYIENQQHLQHLELRD--------LRGLGELRNLTIVK-SGLRFVAPDA- 75 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SC---SCSCCSEEECCSCSSCCEECGGG--------SCSCCCCSEEECCS-SCCCEECTTG-
T ss_pred CEEEcCCCCCCCcc-CC-CC---CCCCeeEEEccCCCCCCCcChhH--------hccccCCCEEECCC-CccceeCHHH-
Confidence 34577765467776 55 88 79999999999733788877542 56799999999997 4788888775
Q ss_pred ccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCc
Q 036801 89 HMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYI 136 (388)
Q Consensus 89 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 136 (388)
+..+++|+.|+++++ .++.++...+ ..++ |+.|++.+|.+
T Consensus 76 -~~~l~~L~~L~l~~N-~l~~~~~~~~-----~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 76 -FHFTPRLSRLNLSFN-ALESLSWKTV-----QGLS-LQELVLSGNPL 115 (347)
T ss_dssp -GGSCSCCCEEECCSS-CCSCCCSTTT-----CSCC-CCEEECCSSCC
T ss_pred -hcCCcCCCEEeCCCC-ccceeCHHHc-----ccCC-ceEEEeeCCCc
Confidence 678999999999988 7777777665 3344 99999988776
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.12 E-value=2.6e-07 Score=86.15 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=5.9
Q ss_pred CCccEEEeecC
Q 036801 94 PSLKELWISRC 104 (388)
Q Consensus 94 ~~L~~L~l~~c 104 (388)
++|++|++++|
T Consensus 101 ~~L~~L~Ls~n 111 (372)
T 3un9_A 101 HALDEVNLASC 111 (372)
T ss_dssp SCEEEEECTTC
T ss_pred CCceEEEecCC
Confidence 45555555555
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.11 E-value=6.1e-06 Score=75.96 Aligned_cols=88 Identities=27% Similarity=0.235 Sum_probs=71.5
Q ss_pred CcCCCcccEEeEecCCCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccccc
Q 036801 2 TCGIQNLTHLTFYNCMNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLT 81 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 81 (388)
++.+++|++|+|++++.++.+++.+|+ ++++|+.|+|++| ++..++... +..+++|+.|+|++ +++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDA--------FHFTPRLSRLNLSF-NALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTG--------GGSCSCCCEEECCS-SCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC-ccceeCHHH--------hcCCcCCCEEeCCC-Cccc
Confidence 356778999999976788888778888 8999999999999 688776642 56799999999997 5788
Q ss_pred cccCCCcccccCCCccEEEeecCC
Q 036801 82 SFSTGDVHMLEFPSLKELWISRCP 105 (388)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~l~~c~ 105 (388)
.++... +..++ |+.|++.++.
T Consensus 94 ~~~~~~--~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 94 SLSWKT--VQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCCSTT--TCSCC-CCEEECCSSC
T ss_pred eeCHHH--cccCC-ceEEEeeCCC
Confidence 888764 34444 9999998874
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00056 Score=63.94 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=68.4
Q ss_pred CcCCCcccEEeEecC--CCCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEecccccc
Q 036801 2 TCGIQNLTHLTFYNC--MNLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEK 79 (388)
Q Consensus 2 ~~~l~~L~~L~l~~~--~~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 79 (388)
..+|.+|+.+.+..+ ..++.+...+|. .+.+|+.+.+-. +++.+.... ...+.+|+.+.+.. .
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~---~c~~L~~i~~~~--~~~~I~~~a--------F~~c~~L~~i~lp~--~ 147 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFM---FCSELTDIPILD--SVTEIDSEA--------FHHCEELDTVTIPE--G 147 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTT---TCTTCCBCGGGT--TCSEECTTT--------TTTCTTCCEEECCT--T
T ss_pred hhCCccCceEeecCCCCCeeeEechhhch---hcccceeeccCC--ccceehhhh--------hhhhcccccccccc--e
Confidence 357889999999764 346666666677 788899888765 466655442 45678888888853 3
Q ss_pred cccccCCCcccccCCCccEEEeecCCCceEecccccCCccccccCCccEEEEee
Q 036801 80 LTSFSTGDVHMLEFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 80 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
+..+.... +..+.+|+.+.+.. .++.+....+ ...+|+.+.+..
T Consensus 148 ~~~I~~~~--F~~c~~L~~i~~~~--~~~~I~~~aF------~~~~l~~i~ip~ 191 (394)
T 4gt6_A 148 VTSVADGM--FSYCYSLHTVTLPD--SVTAIEERAF------TGTALTQIHIPA 191 (394)
T ss_dssp CCEECTTT--TTTCTTCCEEECCT--TCCEECTTTT------TTCCCSEEEECT
T ss_pred eeeecccc--eecccccccccccc--eeeEeccccc------cccceeEEEECC
Confidence 55555443 55677888887754 3444444443 224566666543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=1.9e-05 Score=73.05 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=24.4
Q ss_pred ccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccchhHhhcCCCccEEEE
Q 036801 122 VFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSLDDFLQRFHTLKVLQI 183 (388)
Q Consensus 122 ~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 183 (388)
.+|+|+.|.+.++.. ..++....++|++|++..+..-. .....-....+++|+.|++
T Consensus 170 ~~P~L~~L~L~g~~~----l~l~~~~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN----LSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp TCTTCCEEEEECCBT----CBCCSCBCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEE
T ss_pred cCCCCcEEEEeCCCC----ceeccccCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEE
Confidence 445566666555421 11121224566666665443211 1111001124666776666
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=1.3e-05 Score=74.08 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=18.5
Q ss_pred ccccceeecccccccce-----eccCcccccCCCcceEeccCCc
Q 036801 310 FSKLNELRLLNLESLRS-----FYSGYCALNFPSLERLLVDDCT 348 (388)
Q Consensus 310 ~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~ 348 (388)
+++|+.|+++.+ .+.+ +..+. ..+++|+.|++++|.
T Consensus 278 ~~~L~~LdLs~n-~L~d~G~~~L~~~L--~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAG-VLTDEGARLLLDHV--DKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSS-CCBHHHHHHHHTTH--HHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCC-CCChHHHHHHHhhc--ccCCcceEEECCCCc
Confidence 456666666543 3333 22222 345667777776653
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.76 E-value=1.3e-06 Score=81.28 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=99.0
Q ss_pred cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCccccccccchhhccCccEeeccccccccccccc--h
Q 036801 92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLFSKDLLCKLKCLDVEFVDELTTILSL--D 169 (388)
Q Consensus 92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~lp~~~l~~L~~L~l~~~~~~~~~~~~--~ 169 (388)
.+++|++|++++| .+.......+...+....++|++|++++|.+.......-...+++|++|++++|..-. .... .
T Consensus 70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHH
T ss_pred HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHH
Confidence 3678999999888 3443222221111112346899999999876321111112346789999999875322 1110 1
Q ss_pred hHh-hcCCCccEEEEEeccCCCCceeecCccccccceeeeeeccceeccccCCCCCCccceEEecCCccccc-----cCC
Q 036801 170 DFL-QRFHTLKVLQIEGYNYWLPKEKVENGVEVIIREAYNCYDMKYILKHESSSIMDNLVILRVSSCHHLIN-----LVP 243 (388)
Q Consensus 170 ~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~~~l~l~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~-----l~~ 243 (388)
..+ ...++|++|++..|.+ +..-...+. ..+...++|++|++++|. +++ +..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l---~~~~~~~l~------------------~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~ 205 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPL---TAAGVAVLM------------------EGLAGNTSVTHLSLLHTG-LGDEGLELLAA 205 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCC---HHHHHHHHH------------------HHHHTCSSCCEEECTTSS-CHHHHHHHHHH
T ss_pred HHHHhcCCccceeeCCCCCC---ChHHHHHHH------------------HHHhcCCCcCEEeCCCCC-CCcHHHHHHHH
Confidence 112 2467899999965566 321100010 334456889999999885 332 233
Q ss_pred CCCCCCCcCEEEEecCCCceeecchhh---hhccCccCEEeecccc
Q 036801 244 SSTSFQNLTTLEISHCNGLKNVLTFLI---AKTLVRLREMKIESCA 286 (388)
Q Consensus 244 ~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~c~ 286 (388)
.+...++|+.|++++| .+.+.....+ ....++|++|+++++.
T Consensus 206 ~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 206 QLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4556778999999876 4554433222 2345889999997663
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.036 Score=51.14 Aligned_cols=79 Identities=8% Similarity=0.001 Sum_probs=43.2
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
...+|+.+.+-. +++.+.... ...|.+|+.+.+.. .++.+.... +..+ +|+.+.+. ..++.+.
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~a--------F~~C~~L~~I~lp~--~v~~Ig~~a--F~~c-~l~~i~~~--~~l~~I~ 106 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEAN--------FNSCYNMTKVTVAS--TVTSIGDGA--FADT-KLQSYTGM--ERVKKFG 106 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTT--------TTTCTTCCEEEECT--TCCEECTTT--TTTC-CCCEEEEC--TTCCEEC
T ss_pred cccCCEEEEeCC--CccChHHHH--------hhCCCCCCEEEeCC--cceEechhh--hcCC-CCceEECC--ceeeEec
Confidence 556677777754 466655542 44677777777753 355555553 3333 45555553 2455554
Q ss_pred ccccCCccccccCCccEEEEee
Q 036801 112 KRTTNDLTKKVFPNLEELIVDA 133 (388)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~i~~ 133 (388)
...+ ...+|+.+.+.+
T Consensus 107 ~~aF------~~~~L~~i~lp~ 122 (379)
T 4h09_A 107 DYVF------QGTDLDDFEFPG 122 (379)
T ss_dssp TTTT------TTCCCSEEECCT
T ss_pred ccee------ccCCcccccCCC
Confidence 4443 123566666644
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.019 Score=53.04 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred ccceeccccCCCCCCccceEEecCCccccccCC-CCCCCCCcCEEEEecCCCceeecchhhhhccCccCEEeeccccccc
Q 036801 211 DMKYILKHESSSIMDNLVILRVSSCHHLINLVP-SSTSFQNLTTLEISHCNGLKNVLTFLIAKTLVRLREMKIESCAMIT 289 (388)
Q Consensus 211 ~l~~i~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 289 (388)
.+..|.. ..+..+.+|+.+.+.. .++.++. .+..+++|+.+.+.+ ..+..+... +...+.+|+++.+.. .++
T Consensus 250 ~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~-aF~~c~~L~~i~lp~--~l~ 322 (379)
T 4h09_A 250 NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR-VFMDCVKLSSVTLPT--ALK 322 (379)
T ss_dssp TCCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTT-TTTTCTTCCEEECCT--TCC
T ss_pred CccEeCc-cccceeehhccccccc--cceeccccccccccccccccccc-cccceehhh-hhcCCCCCCEEEcCc--ccc
Confidence 4555555 6677778888888854 3444443 456788899988864 346666554 345678888888853 244
Q ss_pred cccccCCCCCccccccceecccccceeecccccccceeccC
Q 036801 290 EIVLADDDDDHDAAKDEVIAFSKLNELRLLNLESLRSFYSG 330 (388)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 330 (388)
.+... + +..+++|+.+.+.. +++.+...
T Consensus 323 ~I~~~--a---------F~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 323 TIQVY--A---------FKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp EECTT--T---------TTTCTTCCCCCCCT--TCCEECTT
T ss_pred EEHHH--H---------hhCCCCCCEEEECC--ccCEEchh
Confidence 44211 1 22346777777743 46666554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.07 E-value=0.00067 Score=56.21 Aligned_cols=122 Identities=8% Similarity=-0.033 Sum_probs=59.0
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCc--ccccCCCccEEEeecCCCceE
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDV--HMLEFPSLKELWISRCPGFMV 109 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~ 109 (388)
..++|++|+|++|..+.+-.... ....+...++|++|+++++ .+.+.....+ .....++|++|++++| .+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~----l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKA----CAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHH----HHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHH----HHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 56677777777762232210000 0000344567777877764 3443211100 0223577888888777 3332
Q ss_pred ecccccCCccccccCCccEEEE--eecCccccc-cccch--hhccCccEeeccccc
Q 036801 110 KFKRTTNDLTKKVFPNLEELIV--DAKYITTNK-FLFSK--DLLCKLKCLDVEFVD 160 (388)
Q Consensus 110 ~~~~~~~~~~~~~l~~L~~L~i--~~~~~~~~~-~~lp~--~~l~~L~~L~l~~~~ 160 (388)
.....++ ..-...++|++|++ .+|.+.... ..+.. ...+.|++|+++++.
T Consensus 108 ~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1100000 00134567888888 556653211 11111 124688888888764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.92 E-value=0.0026 Score=55.81 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=48.4
Q ss_pred cccccceeeccccccccEeeecccccccccccccccccceEecccccccccccCCCcccccCCCccEEEeecCCCceEec
Q 036801 32 SFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYDLEKLTSFSTGDVHMLEFPSLKELWISRCPGFMVKF 111 (388)
Q Consensus 32 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 111 (388)
.+++|++|+|++| .+..+..... .+..+++|+.|+|++ +.+.++.... ....+ +|++|.+++++.-..++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~------~~~~l~~L~~L~Ls~-N~i~~~~~l~-~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSS------IVQKAPNLKILNLSG-NELKSERELD-KIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTT------HHHHSTTCCEEECTT-SCCCSGGGGG-GGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCC-CCCCCccchh------HHhhCCCCCEEECCC-CccCCchhhh-hcccC-CcceEEccCCcCccccC
Confidence 5778888888887 4555432100 034678888888876 4566552211 11223 78888888876433222
Q ss_pred ccc-cCCccccccCCccEEE
Q 036801 112 KRT-TNDLTKKVFPNLEELI 130 (388)
Q Consensus 112 ~~~-~~~~~~~~l~~L~~L~ 130 (388)
... +...+...+|+|+.|+
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 110 0001125677887776
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.56 E-value=0.0035 Score=51.78 Aligned_cols=62 Identities=21% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCccceEEecCCcccc----ccCCCCCCCCCcCEEEEe-cCCCceeecchh---hhhccCccCEEeeccc
Q 036801 224 MDNLVILRVSSCHHLI----NLVPSSTSFQNLTTLEIS-HCNGLKNVLTFL---IAKTLVRLREMKIESC 285 (388)
Q Consensus 224 l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~-~c~~l~~~~~~~---~~~~~~~L~~L~l~~c 285 (388)
.++|++|++++|..-. .+...+...++|++|+++ ..+.+.+..... +....++|++|+++++
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456666665553211 122233445556666662 123444322111 1223356666666544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.33 E-value=0.013 Score=51.41 Aligned_cols=81 Identities=20% Similarity=0.094 Sum_probs=47.2
Q ss_pred cCCCccEEEeecCCCceEecccccCCccccccCCccEEEEeecCcccccccc-chhhcc--CccEeeccccccccccccc
Q 036801 92 EFPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAKYITTNKFLF-SKDLLC--KLKCLDVEFVDELTTILSL 168 (388)
Q Consensus 92 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~l-p~~~l~--~L~~L~l~~~~~~~~~~~~ 168 (388)
.+|+|+.|+++++ .+..++.-. .....+++|+.|++++|.+. .+ ....+. +|++|++.++.... .++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~---~~~~~l~~L~~L~Ls~N~i~----~~~~l~~l~~l~L~~L~L~~Npl~~--~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMS---SIVQKAPNLKILNLSGNELK----SERELDKIKGLKLEELWLDGNSLCD--TFR 237 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGT---THHHHSTTCCEEECTTSCCC----SGGGGGGGTTSCCSEEECTTSTTGG--GCS
T ss_pred hCCCCCEEECCCC-CCCCCccch---hHHhhCCCCCEEECCCCccC----CchhhhhcccCCcceEEccCCcCcc--ccC
Confidence 4778888888777 555443210 00146788888888877763 22 122333 78888887765332 122
Q ss_pred ------hhHhhcCCCccEEE
Q 036801 169 ------DDFLQRFHTLKVLQ 182 (388)
Q Consensus 169 ------~~~~~~l~~L~~L~ 182 (388)
...+..+++|+.|+
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 23566778887664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.65 E-value=0.44 Score=36.48 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCcceEeccCCcccccCCCCC-cCCCCcceEEEeccCCcccccccC
Q 036801 337 PSLERLLVDDCTNMEIFSRGE-LSTPMLHKVQLNMWDEACWAWKEG 381 (388)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~~~~~~~~~~~~~ 381 (388)
++|++|++++ ++++.+|.+. ..+++|+.|++. ++.|.++.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~---~NP~~CdC~ 72 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLG---ANPWRCDCR 72 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECC---SSCCBCSGG
T ss_pred cCCCEEECCC-CcCCccChhhhhhccccCEEEec---CCCeeccCc
Confidence 4566666665 4566665543 234666666666 566655444
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.52 E-value=0.75 Score=35.11 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=18.2
Q ss_pred CCCccEEEeecCCCceEecccccCCccccccCCccEEEEeec
Q 036801 93 FPSLKELWISRCPGFMVKFKRTTNDLTKKVFPNLEELIVDAK 134 (388)
Q Consensus 93 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~ 134 (388)
.++|+.|+++++ .++.++...+ ..+++|+.|++.+|
T Consensus 30 p~~l~~L~Ls~N-~l~~l~~~~f-----~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTALPPGLL-----DALPALRTAHLGAN 65 (130)
T ss_dssp CTTCSEEECTTS-CCSSCCTTTG-----GGCTTCCEEECCSS
T ss_pred CcCCCEEECCCC-cCCccChhhh-----hhccccCEEEecCC
Confidence 334555555554 4444544444 34555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.31 E-value=0.78 Score=37.89 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.9
Q ss_pred CccceEEecCC
Q 036801 225 DNLVILRVSSC 235 (388)
Q Consensus 225 ~~L~~L~l~~c 235 (388)
++|++|+|.++
T Consensus 98 ~tL~~L~L~~N 108 (197)
T 1pgv_A 98 PSLRVLNVESN 108 (197)
T ss_dssp SSCCEEECCSS
T ss_pred CccCeEecCCC
Confidence 45555555544
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=57.02 E-value=2.8 Score=34.53 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=34.5
Q ss_pred cCCCCCCccceEEecCCcccc----ccCCCCCCCCCcCEEEEecCCCceeecchhhhhc---cCccCEEeeccc
Q 036801 219 ESSSIMDNLVILRVSSCHHLI----NLVPSSTSFQNLTTLEISHCNGLKNVLTFLIAKT---LVRLREMKIESC 285 (388)
Q Consensus 219 ~~l~~l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~L~~L~l~~c 285 (388)
+.+..-++|+.|+|.+|..-. .+...+..-+.|+.|+|+. +.+.+.....++.. =..|++|+++++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344455778888887764321 1112233456788888874 34554433222222 235777777543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.06 E-value=69 Score=22.66 Aligned_cols=46 Identities=11% Similarity=-0.070 Sum_probs=30.6
Q ss_pred CCcccccccccccccccccceeeccccccccEeeecccccccccccccccccceEeccc
Q 036801 18 NLRCLFSSSTVSNSSFVRLQYIEIEKCHVLEELIVMDNQEEDRNNIVIFPRLQYLKMYD 76 (388)
Q Consensus 18 ~~~~~~p~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (388)
.++.+....|. ++.+|+.+.+-. .++.+.... +..|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~---~c~~L~~i~iP~--~v~~Ig~~a--------F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFA---GNTVIREITVQP--NIGLLYDGM--------FSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTT---TCTTCCCEEECT--TSSCCCTTS--------STTCTTCCCEEECC
T ss_pred ccCEecHHHhc---CCCCCcEEEcCC--chheEcHHH--------HhccCCccEEEEcC
Confidence 34455455566 788888888865 466654442 55788888888875
Done!