BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036802
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DA2|A Chain A, Solution Structure Of The Second Homeobox Domain Of At-
          Binding Transcription Factor 1 (Atbf1)
          Length = 70

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 36 TSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90
          T  Q++VL D F +    P  D+ +++S  L+    + ++ +  WFQN + + R+
Sbjct: 15 TDYQLRVLQDFFDANA-YPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARK 64


>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
 pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
          Length = 426

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 35  PTSEQVKVL--TDLFT--SGLRTPSTDQIQK--------ISTQLSFYGKIESKNVFYWFQ 82
           P +E V +   +D+F   SG   P    I +        I +  + Y K  +  VFYW +
Sbjct: 2   PNAEDVDMPWDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSE 61

Query: 83  NHKARERQKRRKVSVD-YDHQKDLIRHV 109
           N K+++R     V+   Y++    I H 
Sbjct: 62  NSKSQKRAMGTVVTYKYYNYTSAFIHHC 89


>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant
          R31lE42L
          Length = 67

 Score = 26.9 bits (58), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 36 TSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94
          T  Q++VL ++F      P  D ++ ++ +L+    +E   +  WFQN +A+ ++  R+
Sbjct: 9  TQNQIEVLENVFRVNC-YPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRE 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,479,261
Number of Sequences: 62578
Number of extensions: 213154
Number of successful extensions: 713
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)