Query 036802
Match_columns 180
No_of_seqs 120 out of 455
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.9 4.4E-24 1.5E-28 150.3 3.4 72 17-93 6-77 (80)
2 2dmt_A Homeobox protein BARH-l 99.9 1.3E-23 4.6E-28 149.1 4.6 72 17-93 6-77 (80)
3 1wh5_A ZF-HD homeobox family p 99.9 4.3E-23 1.5E-27 148.2 4.0 63 23-90 12-78 (80)
4 1wh7_A ZF-HD homeobox family p 99.9 5.6E-23 1.9E-27 148.2 3.6 67 18-90 7-78 (80)
5 2cra_A Homeobox protein HOX-B1 99.9 7.2E-23 2.5E-27 141.9 3.2 67 22-93 1-67 (70)
6 2dms_A Homeobox protein OTX2; 99.9 1.2E-22 4E-27 144.0 4.4 71 22-97 1-71 (80)
7 2dmu_A Homeobox protein goosec 99.9 1.3E-22 4.4E-27 140.4 4.4 66 23-93 2-67 (70)
8 1nk2_P Homeobox protein VND; h 99.9 2.6E-22 8.8E-27 141.6 5.8 72 21-97 2-73 (77)
9 2da2_A Alpha-fetoprotein enhan 99.9 8.5E-23 2.9E-27 141.0 3.2 68 22-94 1-68 (70)
10 2cue_A Paired box protein PAX6 99.9 1.9E-22 6.3E-27 143.3 5.0 67 25-96 4-70 (80)
11 2da1_A Alpha-fetoprotein enhan 99.9 7.8E-23 2.7E-27 141.2 2.6 66 23-93 2-67 (70)
12 2dmq_A LIM/homeobox protein LH 99.9 2.3E-22 7.9E-27 142.0 5.0 68 24-96 3-70 (80)
13 2e1o_A Homeobox protein PRH; D 99.9 2.1E-22 7.1E-27 139.6 4.6 66 23-93 2-67 (70)
14 2djn_A Homeobox protein DLX-5; 99.9 1.4E-22 4.9E-27 140.4 2.9 67 22-93 1-67 (70)
15 2kt0_A Nanog, homeobox protein 99.8 3.2E-22 1.1E-26 142.4 4.1 67 22-93 16-82 (84)
16 2da4_A Hypothetical protein DK 99.8 1.9E-22 6.4E-27 143.0 2.7 67 23-94 3-73 (80)
17 2cuf_A FLJ21616 protein; homeo 99.8 8E-22 2.7E-26 144.2 5.5 74 22-96 1-85 (95)
18 1puf_A HOX-1.7, homeobox prote 99.8 1.2E-21 4.2E-26 138.2 5.3 69 22-95 7-75 (77)
19 1zq3_P PRD-4, homeotic bicoid 99.8 1.1E-21 3.9E-26 135.4 4.3 64 27-95 1-64 (68)
20 1fjl_A Paired protein; DNA-bin 99.8 1.2E-21 4E-26 139.2 4.4 67 24-95 14-80 (81)
21 2vi6_A Homeobox protein nanog; 99.8 5.1E-22 1.7E-26 134.6 2.4 60 28-92 3-62 (62)
22 1ig7_A Homeotic protein MSX-1; 99.8 1E-21 3.6E-26 131.0 3.7 57 29-90 1-57 (58)
23 2r5y_A Homeotic protein sex co 99.8 8.2E-22 2.8E-26 142.1 3.2 67 21-92 21-87 (88)
24 2hdd_A Protein (engrailed home 99.8 7.8E-22 2.7E-26 133.2 2.9 59 28-91 3-61 (61)
25 2da5_A Zinc fingers and homeob 99.8 1.5E-21 5.1E-26 137.6 4.1 68 23-95 2-69 (75)
26 2h1k_A IPF-1, pancreatic and d 99.8 1.3E-21 4.4E-26 133.2 3.5 60 28-92 3-62 (63)
27 2k40_A Homeobox expressed in E 99.8 1.2E-21 4E-26 134.5 3.2 63 29-96 2-64 (67)
28 3a01_A Homeodomain-containing 99.8 2.9E-21 1E-25 141.4 5.2 70 22-96 11-80 (93)
29 1jgg_A Segmentation protein EV 99.8 1.5E-21 5.2E-26 131.4 3.3 58 29-91 2-59 (60)
30 2l7z_A Homeobox protein HOX-A1 99.8 2.3E-21 7.9E-26 135.7 4.1 67 24-95 3-69 (73)
31 1yz8_P Pituitary homeobox 2; D 99.8 9.2E-22 3.2E-26 135.7 1.8 65 27-96 2-66 (68)
32 2dn0_A Zinc fingers and homeob 99.8 1.7E-21 5.6E-26 137.2 2.6 69 23-96 3-71 (76)
33 1ahd_P Antennapedia protein mu 99.8 1.9E-21 6.4E-26 134.6 2.5 63 28-95 2-64 (68)
34 1b8i_A Ultrabithorax, protein 99.8 2.3E-21 8E-26 138.3 3.1 63 26-93 18-80 (81)
35 1bw5_A ISL-1HD, insulin gene e 99.8 1.9E-21 6.4E-26 133.2 2.2 60 28-92 3-62 (66)
36 2m0c_A Homeobox protein arista 99.8 3.5E-21 1.2E-25 133.7 3.6 68 23-95 4-71 (75)
37 1ftt_A TTF-1 HD, thyroid trans 99.8 3.6E-21 1.2E-25 132.9 3.5 63 28-95 2-64 (68)
38 3rkq_A Homeobox protein NKX-2. 99.8 4E-21 1.4E-25 127.1 3.5 58 27-89 1-58 (58)
39 3a02_A Homeobox protein arista 99.8 3.4E-21 1.1E-25 129.7 2.5 58 31-93 2-59 (60)
40 3nar_A ZHX1, zinc fingers and 99.8 3.6E-21 1.2E-25 141.2 2.7 71 17-92 14-84 (96)
41 1b72_A Protein (homeobox prote 99.8 5.9E-21 2E-25 140.0 3.6 66 24-94 30-95 (97)
42 2da6_A Hepatocyte nuclear fact 99.8 1.2E-20 4.3E-25 143.1 5.3 75 25-100 3-94 (102)
43 2hi3_A Homeodomain-only protei 99.8 1.2E-20 4.2E-25 131.8 4.0 63 29-95 3-65 (73)
44 1uhs_A HOP, homeodomain only p 99.8 1.2E-20 4.2E-25 131.3 4.0 61 30-94 3-63 (72)
45 1x2n_A Homeobox protein pknox1 99.8 1.9E-20 6.4E-25 130.4 4.6 68 23-94 2-71 (73)
46 2ly9_A Zinc fingers and homeob 99.8 1.4E-20 4.9E-25 131.1 3.9 66 25-95 3-68 (74)
47 1akh_A Protein (mating-type pr 99.8 1E-20 3.6E-25 127.2 2.1 58 27-89 4-61 (61)
48 2dmn_A Homeobox protein TGIF2L 99.8 3.9E-20 1.3E-24 132.9 5.1 71 23-97 2-74 (83)
49 3a03_A T-cell leukemia homeobo 99.8 1.8E-20 6.3E-25 125.0 3.0 54 33-91 2-55 (56)
50 1puf_B PRE-B-cell leukemia tra 99.8 3E-20 1E-24 129.4 3.3 64 28-96 1-67 (73)
51 2dmp_A Zinc fingers and homeob 99.8 1.1E-19 3.7E-24 132.3 4.8 68 25-97 10-77 (89)
52 2ecc_A Homeobox and leucine zi 99.8 8.5E-20 2.9E-24 131.9 3.9 60 31-95 6-65 (76)
53 1du6_A PBX1, homeobox protein 99.8 3.5E-20 1.2E-24 125.9 1.3 58 28-90 3-63 (64)
54 1b72_B Protein (PBX1); homeodo 99.8 1.1E-19 3.8E-24 130.0 3.9 64 28-96 1-67 (87)
55 1k61_A Mating-type protein alp 99.8 1.2E-19 4.2E-24 121.8 3.0 57 31-91 1-59 (60)
56 1wi3_A DNA-binding protein SAT 99.8 1.4E-19 4.9E-24 130.2 3.5 61 23-88 2-63 (71)
57 1e3o_C Octamer-binding transcr 99.8 1.2E-19 4.2E-24 143.8 2.5 62 25-91 98-159 (160)
58 1au7_A Protein PIT-1, GHF-1; c 99.8 1.2E-19 4.2E-24 142.4 2.2 64 24-92 83-146 (146)
59 1lfb_A Liver transcription fac 99.8 9.6E-20 3.3E-24 136.3 1.6 73 25-98 6-95 (99)
60 3d1n_I POU domain, class 6, tr 99.7 3.7E-19 1.3E-23 139.5 4.0 62 24-90 89-150 (151)
61 2ecb_A Zinc fingers and homeob 99.7 6.3E-19 2.1E-23 130.1 4.6 64 31-99 14-77 (89)
62 2e19_A Transcription factor 8; 99.7 2.7E-19 9.1E-24 123.8 1.9 55 32-91 7-61 (64)
63 2xsd_C POU domain, class 3, tr 99.7 3E-19 1E-23 142.9 1.8 65 25-94 96-160 (164)
64 1mnm_C Protein (MAT alpha-2 tr 99.7 7.3E-19 2.5E-23 126.4 3.5 60 26-90 25-87 (87)
65 2cqx_A LAG1 longevity assuranc 99.7 2.6E-19 9E-24 126.2 0.5 59 29-92 9-68 (72)
66 1le8_B Mating-type protein alp 99.7 8.7E-19 3E-23 125.5 2.8 58 30-92 4-64 (83)
67 2d5v_A Hepatocyte nuclear fact 99.7 7.7E-19 2.6E-23 138.6 1.9 67 23-94 92-158 (164)
68 1x2m_A LAG1 longevity assuranc 99.7 1.1E-18 3.8E-23 122.4 2.5 50 38-91 10-59 (64)
69 2l9r_A Homeobox protein NKX-3. 99.7 1E-18 3.5E-23 123.3 1.3 57 34-95 10-66 (69)
70 3l1p_A POU domain, class 5, tr 99.7 2.6E-18 9E-23 135.8 2.9 61 26-91 94-154 (155)
71 3nau_A Zinc fingers and homeob 99.7 5.8E-18 2E-22 120.0 2.5 53 35-92 11-63 (66)
72 1ic8_A Hepatocyte nuclear fact 99.6 1.5E-17 5.2E-22 137.3 -0.2 66 25-91 112-194 (194)
73 3k2a_A Homeobox protein MEIS2; 99.6 5.5E-17 1.9E-21 112.5 2.2 57 34-95 4-63 (67)
74 2h8r_A Hepatocyte nuclear fact 99.5 2.4E-15 8.3E-20 127.1 2.7 64 24-88 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.5 8.6E-15 3E-19 105.3 3.5 49 35-88 12-60 (71)
76 1mh3_A Maltose binding-A1 home 99.4 1.2E-14 4.1E-19 122.9 -0.0 57 28-89 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.4 1.1E-13 3.7E-18 102.8 3.3 61 33-97 10-72 (89)
78 2nzz_A Penetratin conjugated G 98.9 2.5E-10 8.6E-15 72.8 0.8 24 75-98 1-24 (37)
79 2ys9_A Homeobox and leucine zi 83.5 0.34 1.2E-05 34.5 1.0 41 37-82 15-55 (70)
80 2rgt_A Fusion of LIM/homeobox 82.9 0.014 4.9E-07 45.1 -7.0 31 25-56 133-163 (169)
81 3hug_A RNA polymerase sigma fa 77.3 1.2 4.1E-05 30.6 2.1 50 34-93 37-86 (92)
82 2glo_A Brinker CG9653-PA; prot 75.6 1.2 4.2E-05 28.5 1.7 45 32-82 3-47 (59)
83 2eqr_A N-COR1, N-COR, nuclear 73.2 2.5 8.5E-05 28.0 2.7 53 25-85 5-58 (61)
84 2o8x_A Probable RNA polymerase 71.1 1.4 4.7E-05 28.0 1.0 46 34-89 15-60 (70)
85 1jko_C HIN recombinase, DNA-in 71.1 0.96 3.3E-05 26.7 0.3 43 34-86 5-47 (52)
86 2elh_A CG11849-PA, LD40883P; s 70.9 2.1 7.3E-05 29.4 2.1 43 29-81 17-59 (87)
87 2lv7_A Calcium-binding protein 68.5 8.1 0.00028 27.0 4.8 51 29-81 24-78 (100)
88 1fi6_A EH domain protein REPS1 68.4 2 6.8E-05 29.2 1.5 43 33-79 1-47 (92)
89 3mzy_A RNA polymerase sigma-H 68.2 2.1 7.2E-05 30.5 1.6 47 34-91 109-155 (164)
90 1tc3_C Protein (TC3 transposas 65.5 3.3 0.00011 23.7 1.9 40 34-83 5-44 (51)
91 1hlv_A CENP-B, major centromer 63.2 5.3 0.00018 28.5 2.9 52 30-89 3-54 (131)
92 3i5g_B Myosin regulatory light 63.1 13 0.00044 27.2 5.2 37 31-67 6-46 (153)
93 1s7o_A Hypothetical UPF0122 pr 62.1 3.4 0.00012 30.3 1.7 49 34-92 22-70 (113)
94 1iq3_A Ralbp1-interacting prot 56.5 2.6 9E-05 30.2 0.3 52 26-81 7-62 (110)
95 1xsv_A Hypothetical UPF0122 pr 55.8 4.9 0.00017 29.2 1.7 51 34-94 25-75 (113)
96 1c07_A Protein (epidermal grow 55.4 3.7 0.00013 28.1 0.9 45 33-81 2-50 (95)
97 2x48_A CAG38821; archeal virus 54.9 2.6 8.8E-05 26.0 0.0 40 33-82 12-53 (55)
98 1eh2_A EPS15; calcium binding, 54.7 8.8 0.0003 27.4 2.9 44 31-78 5-51 (106)
99 1or7_A Sigma-24, RNA polymeras 51.7 5.8 0.0002 29.3 1.5 46 35-90 141-186 (194)
100 1fse_A GERE; helix-turn-helix 48.6 6 0.0002 25.2 1.0 45 32-87 9-53 (74)
101 1rp3_A RNA polymerase sigma fa 48.1 7.7 0.00026 29.4 1.7 48 34-91 187-234 (239)
102 1wj7_A Hypothetical protein (R 46.8 28 0.00096 26.1 4.6 52 19-76 4-56 (104)
103 1ku3_A Sigma factor SIGA; heli 46.3 8 0.00027 25.2 1.4 45 34-88 10-58 (73)
104 3j04_B Myosin regulatory light 45.7 24 0.00082 24.0 3.9 47 35-83 1-51 (143)
105 2p7v_B Sigma-70, RNA polymeras 45.6 6.3 0.00022 25.3 0.8 41 34-84 5-49 (68)
106 1je8_A Nitrate/nitrite respons 45.3 4.7 0.00016 27.3 0.1 47 30-87 17-63 (82)
107 2lhi_A Calmodulin, serine/thre 43.9 7.5 0.00026 29.2 1.1 36 32-67 2-41 (176)
108 2cqq_A RSGI RUH-037, DNAJ homo 43.2 24 0.0008 24.3 3.5 38 34-78 10-49 (72)
109 1u78_A TC3 transposase, transp 42.9 11 0.00037 26.5 1.8 41 33-83 5-45 (141)
110 2q1z_A RPOE, ECF SIGE; ECF sig 42.6 3.8 0.00013 30.2 -0.8 26 61-90 156-181 (184)
111 1p4w_A RCSB; solution structur 42.2 12 0.00041 26.7 1.9 42 32-84 32-73 (99)
112 2rnj_A Response regulator prot 41.6 5.9 0.0002 27.0 0.2 44 33-87 28-71 (91)
113 2jn6_A Protein CGL2762, transp 41.4 11 0.00038 25.7 1.6 41 32-82 3-45 (97)
114 3c57_A Two component transcrip 41.1 9.4 0.00032 26.5 1.2 45 34-89 27-71 (95)
115 2np3_A Putative TETR-family re 40.3 7.3 0.00025 28.7 0.5 41 40-86 36-76 (212)
116 1x3u_A Transcriptional regulat 39.6 5.7 0.0002 25.8 -0.2 40 35-85 17-56 (79)
117 2mys_C Myosin; muscle protein, 39.5 20 0.0007 24.3 2.7 45 35-81 2-50 (149)
118 3fwb_A Cell division control p 38.3 21 0.00073 24.6 2.7 50 30-81 12-65 (161)
119 3i5g_C Myosin catalytic light 37.9 14 0.00047 27.3 1.7 46 34-81 2-53 (159)
120 2jpc_A SSRB; DNA binding prote 37.4 9 0.00031 23.7 0.5 40 38-88 2-41 (61)
121 2opo_A Polcalcin CHE A 3; calc 36.4 11 0.00038 24.1 0.8 45 34-81 4-52 (86)
122 1tty_A Sigma-A, RNA polymerase 36.3 11 0.00038 25.5 0.9 40 34-83 18-61 (87)
123 2rn7_A IS629 ORFA; helix, all 35.9 22 0.00074 24.6 2.4 46 32-81 4-51 (108)
124 1l0o_C Sigma factor; bergerat 35.1 8 0.00027 29.1 0.0 43 34-86 198-240 (243)
125 2kgr_A Intersectin-1; structur 35.0 15 0.00052 25.9 1.5 34 31-64 4-41 (111)
126 2dhy_A CUE domain-containing p 34.9 1.1E+02 0.0037 20.9 6.0 40 21-64 3-42 (67)
127 1wdc_B Scallop myosin; calcium 34.6 34 0.0012 23.8 3.3 49 33-83 10-62 (156)
128 1j7q_A CAVP, calcium vector pr 33.0 29 0.00099 22.1 2.5 43 32-76 5-51 (86)
129 3ulq_B Transcriptional regulat 32.5 15 0.00053 25.5 1.2 41 31-82 26-66 (90)
130 2dk5_A DNA-directed RNA polyme 32.5 29 0.001 24.5 2.6 40 31-77 14-53 (91)
131 3fia_A Intersectin-1; EH 1 dom 32.4 21 0.00071 26.9 1.9 46 31-80 23-72 (121)
132 2joj_A Centrin protein; N-term 31.9 12 0.0004 23.2 0.4 33 35-67 1-37 (77)
133 3lph_A Protein REV; helix-loop 31.3 56 0.0019 23.2 3.9 39 40-97 18-56 (72)
134 3iz6_M 40S ribosomal protein S 29.8 40 0.0014 26.6 3.2 31 52-85 57-87 (152)
135 1avs_A Troponin C; muscle cont 29.5 24 0.00083 22.7 1.7 46 34-81 13-62 (90)
136 2jq6_A EH domain-containing pr 28.9 33 0.0011 26.1 2.5 49 25-78 36-87 (139)
137 2yum_A ZZZ3 protein, zinc fing 28.8 56 0.0019 21.7 3.5 49 31-85 7-59 (75)
138 1iuf_A Centromere ABP1 protein 26.1 92 0.0031 23.0 4.6 49 29-83 6-59 (144)
139 3clo_A Transcriptional regulat 25.4 17 0.00057 29.1 0.3 48 32-90 195-242 (258)
140 2ktg_A Calmodulin, putative; e 25.2 25 0.00084 22.2 1.1 48 32-81 5-56 (85)
141 3qrx_A Centrin; calcium-bindin 25.1 87 0.003 21.7 4.1 40 28-67 15-58 (169)
142 2jnf_A Troponin C; stretch act 25.1 33 0.0011 23.7 1.8 47 33-81 5-56 (158)
143 2cu7_A KIAA1915 protein; nucle 24.7 47 0.0016 22.1 2.4 46 31-84 8-53 (72)
144 3g1o_A Transcriptional regulat 24.2 13 0.00044 28.4 -0.5 41 40-86 49-89 (255)
145 2k27_A Paired box protein PAX- 24.1 73 0.0025 23.2 3.6 41 34-84 25-65 (159)
146 2pmy_A RAS and EF-hand domain- 23.9 15 0.00052 24.2 -0.2 48 30-81 16-67 (91)
147 2hxo_A Putative TETR-family tr 23.9 61 0.0021 25.2 3.3 52 29-86 10-62 (237)
148 3ccy_A Putative TETR-family tr 23.8 39 0.0013 24.5 2.0 41 40-86 20-60 (203)
149 2ovk_B RLC, myosin regulatory 23.7 88 0.003 21.5 3.8 50 30-81 5-58 (153)
150 1pdn_C Protein (PRD paired); p 23.5 35 0.0012 23.1 1.7 39 34-82 17-55 (128)
151 3u0k_A Rcamp; fluorescent prot 23.1 36 0.0012 31.1 2.1 49 31-81 292-344 (440)
152 3q0w_A HTH-type transcriptiona 23.0 10 0.00035 28.6 -1.3 41 40-86 50-90 (236)
153 2qko_A Possible transcriptiona 22.9 21 0.00073 26.2 0.4 42 40-87 34-75 (215)
154 3o48_A Mitochondria fission 1 22.9 91 0.0031 24.1 4.1 36 32-67 15-51 (134)
155 2ovk_C Myosin catalytic light 22.3 33 0.0011 23.9 1.3 47 34-82 2-54 (159)
156 3u5c_S 40S ribosomal protein S 22.3 69 0.0024 25.1 3.3 31 52-85 59-89 (146)
157 2yus_A SWI/SNF-related matrix- 22.2 66 0.0022 22.2 2.9 41 31-79 17-57 (79)
158 2iu5_A DHAS, YCEG, HTH-type dh 22.2 35 0.0012 24.6 1.5 43 39-87 18-60 (195)
159 3ox6_A Calcium-binding protein 22.2 1.7E+02 0.0057 19.5 5.0 34 34-67 4-41 (153)
160 2q0o_A Probable transcriptiona 22.1 28 0.00094 27.3 1.0 46 31-87 172-217 (236)
161 2qwt_A Transcriptional regulat 21.4 26 0.0009 25.5 0.7 40 40-86 19-58 (196)
162 2lqh_B Forkhead box O3, FOXO3A 26.8 20 0.00069 23.6 0.0 14 11-24 22-35 (52)
163 1yx7_A Calsensin, LAN3-6 antig 21.2 40 0.0014 21.1 1.5 44 36-79 2-49 (83)
164 3qqa_A CMER; alpha-helical, he 20.9 56 0.0019 23.4 2.4 40 40-85 25-64 (216)
165 2q24_A Putative TETR family tr 20.9 20 0.00069 25.9 -0.1 41 39-86 20-60 (194)
166 2lfw_A PHYR sigma-like domain; 20.6 8.3 0.00028 28.4 -2.3 47 34-90 93-139 (157)
167 1l3l_A Transcriptional activat 20.5 36 0.0012 26.6 1.4 45 31-86 170-214 (234)
168 4fhr_A Flagellar motor switch 20.1 93 0.0032 24.3 3.7 31 33-67 2-32 (187)
169 2mys_B Myosin; muscle protein, 20.1 77 0.0026 22.1 2.9 49 34-83 18-70 (166)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=4.4e-24 Score=150.26 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 17 AGNGNDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 17 ~gg~~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
.++.++......+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|++..
T Consensus 6 ~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 6 SGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCCCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhcc
Confidence 4444555577788899999999999999999985 9999999999999997 9999999999999999998753
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-23 Score=149.14 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 17 AGNGNDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 17 ~gg~~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
.++..++.....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+...
T Consensus 6 ~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 6 SGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCSCCCCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhcccC
Confidence 4445555667778899999999999999999995 9999999999999997 9999999999999999998754
No 3
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=4.3e-23 Score=148.18 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
++....+|.||.||++|+.+||..|.. + +||+..+|.+||..|+ |++++|+|||||||||.|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 12 AGGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHhC----CCcccccCCccccCcCCCC
Confidence 345567889999999999999999987 5 8999999999999996 9999999999999999875
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.86 E-value=5.6e-23 Score=148.17 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCccCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 18 GNGNDNSDTGTKCGRWNPTSEQVKVLTDLFTS-----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 18 gg~~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~-----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
|+++++.....+|.||.||.+|+.+|| .|.. + +||+..+|.+||..|+ |++.+|+|||||||||.|+
T Consensus 7 g~~~~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 7 GSNPSSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHhC----cCcCcccccccccccCCCC
Confidence 444445566778899999999999999 7987 6 8999999999999996 9999999999999999875
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=7.2e-23 Score=141.91 Aligned_cols=67 Identities=21% Similarity=0.389 Sum_probs=60.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
||.....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+...
T Consensus 1 Gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 1 GSSGSSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCSSCCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccCC
Confidence 34456677899999999999999999985 9999999999999997 9999999999999999998654
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=1.2e-22 Score=144.03 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=63.8
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
|+.....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|++.+....
T Consensus 1 gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 1 GSSGSSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 34456678899999999999999999985 9999999999999997 99999999999999999998876643
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=140.38 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=59.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
|.....+|.|+.||++|+.+||..|.. ++||+..+|.+||..|+ |++.+|+|||||||+|+|+...
T Consensus 2 s~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 2 SSGSSGRRHRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CSTTSSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHC----CCHHHeehccccccccccccCC
Confidence 334456789999999999999999998 49999999999999997 9999999999999999998754
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.86 E-value=2.6e-22 Score=141.63 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=64.2
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 21 NDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 21 ~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
+++.+...+|.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+.......
T Consensus 2 s~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp CSCCSCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhccccC
Confidence 344566678899999999999999999985 9999999999999997 99999999999999999998876643
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=8.5e-23 Score=141.04 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=61.0
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
|++....++.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||||+|++...
T Consensus 1 g~~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 1 GSSGSSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCCSCCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhcccc
Confidence 34455677899999999999999999984 9999999999999996 99999999999999999987653
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.9e-22 Score=143.26 Aligned_cols=67 Identities=18% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
+...+|.|+.||++|+.+||..|.. ++||+..+|.+||..|+ |++.+|+|||||||||+|++.+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFER-THYPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 4566789999999999999999998 49999999999999997 9999999999999999999887653
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=7.8e-23 Score=141.21 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=60.5
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
+.....+|.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||+|+|+..+
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhcc
Confidence 4556678899999999999999999985 9999999999999997 9999999999999999999764
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=142.00 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=61.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
.....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+|++.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHHHh
Confidence 345567899999999999999999985 9999999999999997 9999999999999999999877654
No 13
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.1e-22 Score=139.60 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=59.6
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
|++...++.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+|+...
T Consensus 2 s~~~~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 2 SSGSSGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCCC
Confidence 3445566799999999999999999984 9999999999999997 9999999999999999999764
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-22 Score=140.42 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=60.2
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
|+.+...+|.|+.||++|+.+||..|.. ++||+..++.+||..|+ |++.+|+|||||||+|+|+...
T Consensus 1 gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 1 GSSGSSGRKPRTIYSSFQLAALQRRFQK-TQYLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCSCCCCCCSSCSSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhcccCC
Confidence 3445566789999999999999999998 49999999999999997 9999999999999999998653
No 15
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-22 Score=142.40 Aligned_cols=67 Identities=28% Similarity=0.384 Sum_probs=60.8
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
+......+|.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+.++
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhh
Confidence 33456677899999999999999999984 9999999999999997 9999999999999999998765
No 16
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-22 Score=143.00 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=60.6
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGL----RTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~----~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
++....+|.||.||.+|+.+||..|.. + +||+..+|.+||..|+ |++.+|+|||||||||+|+....
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhccCC
Confidence 445677889999999999999999987 6 8999999999999997 99999999999999999996543
No 17
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=8e-22 Score=144.18 Aligned_cols=74 Identities=16% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc-----------ccCCCCCCcceeccCcchhhHHH
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLS-----------FYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~-----------~~g~L~e~qVqvWFQNRRAReKR 90 (180)
|+.....+|.|+.||++|+.+||..|.. ++||+..+|++||..|+ .++.|++.+|+|||||||+|+|+
T Consensus 1 g~~~~~~rr~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 1 GSSGSSGRGSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp CCSSSCCCCCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999999999999 59999999999999997 55669999999999999999999
Q ss_pred hhhhhc
Q 036802 91 KRRKVS 96 (180)
Q Consensus 91 k~r~~~ 96 (180)
+.+...
T Consensus 80 ~~~~~~ 85 (95)
T 2cuf_A 80 RANIAA 85 (95)
T ss_dssp HHHCCC
T ss_pred HhhccC
Confidence 988753
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.84 E-value=1.2e-21 Score=138.15 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
..+....++.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+..+..
T Consensus 7 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 7 WLHARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp SCCCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhhc
Confidence 33455677899999999999999999985 9999999999999997 999999999999999999987654
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=1.1e-21 Score=135.44 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=59.6
Q ss_pred CCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 27 GTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 27 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
+++|.|+.||++|+.+||..|.. ++||+..+|..||..|+ |++.+|+|||||||||+|+...+.
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhccc
Confidence 46789999999999999999998 49999999999999997 999999999999999999987664
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.84 E-value=1.2e-21 Score=139.17 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=59.7
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|++....
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~~~ 80 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHTSV 80 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhcccC
Confidence 456677899999999999999999985 9999999999999997 999999999999999999987654
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.84 E-value=5.1e-22 Score=134.55 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=52.6
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+|+|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhcC
Confidence 56799999999999999999984 9999999999999997 999999999999999999864
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=1e-21 Score=130.96 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=54.4
Q ss_pred CccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
+|+|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|++||||||||+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 5789999999999999999985 9999999999999997 9999999999999999997
No 23
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.83 E-value=8.2e-22 Score=142.11 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=54.5
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 21 NDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 21 ~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
+++.....+|.|+.||.+|+.+||..|.. ++||+..+|.+||..|+ |++.+|+|||||||||+|+..
T Consensus 21 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 21 TVNANGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhc
Confidence 33445567889999999999999999988 49999999999999997 999999999999999999865
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.83 E-value=7.8e-22 Score=133.24 Aligned_cols=59 Identities=25% Similarity=0.409 Sum_probs=52.7
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
.+|+|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHC----cCHHHHHHHhhhhccccccC
Confidence 57899999999999999999985 9999999999999997 99999999999999999973
No 25
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=137.57 Aligned_cols=68 Identities=13% Similarity=0.340 Sum_probs=60.2
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
+.++..+++|..||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|++....
T Consensus 2 s~p~~~~~kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 2 SSGSSGPTKYKERAPEQLRALESSFAQN-PLPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4444555678889999999999999985 9999999999999997 999999999999999999987654
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.83 E-value=1.3e-21 Score=133.16 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=55.3
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+|.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||||+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhhc
Confidence 56899999999999999999985 9999999999999997 999999999999999999863
No 27
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-21 Score=134.53 Aligned_cols=63 Identities=25% Similarity=0.479 Sum_probs=59.0
Q ss_pred CccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
+|+|+.||++|+.+||..|.. ++||+..++..||..|+ |++.+|++||||||+|+|++.+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhchhcc
Confidence 679999999999999999988 59999999999999997 9999999999999999999887654
No 28
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=2.9e-21 Score=141.39 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=62.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 22 DNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 22 gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
.+.+...+|.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+|++.....
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHHH
Confidence 34456677899999999999999999985 9999999999999997 9999999999999999999877654
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.5e-21 Score=131.43 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=54.7
Q ss_pred CccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
+|.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|++||||||||+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhcc
Confidence 6799999999999999999985 9999999999999997 99999999999999999985
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.83 E-value=2.3e-21 Score=135.74 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=60.4
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
+....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 3 HMLEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSSCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHhccc
Confidence 344567899999999999999999985 9999999999999997 999999999999999999976543
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.83 E-value=9.2e-22 Score=135.65 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=59.9
Q ss_pred CCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 27 GTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 27 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
..+|.|+.||++|+.+||..|.. ++||+..++.+||..|+ |++.+|+|||||||||+|+..+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR-NRYPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT-CSSCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhccC
Confidence 35789999999999999999998 59999999999999997 9999999999999999999887654
No 32
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-21 Score=137.18 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=60.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
++...+.+.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+|++.+...
T Consensus 3 s~~~~~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 3 SGSSGASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CSCSCCCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhcccCC
Confidence 3444555679999999999999999984 9999999999999997 9999999999999999999776543
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.82 E-value=1.9e-21 Score=134.59 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=58.3
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhcccc
Confidence 46899999999999999999985 9999999999999997 999999999999999999977543
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.82 E-value=2.3e-21 Score=138.33 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred CCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 26 TGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 26 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
...+|.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+||..+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 3457799999999999999999985 9999999999999997 9999999999999999999754
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=1.9e-21 Score=133.18 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=56.6
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+|+|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHh
Confidence 57899999999999999999984 9999999999999997 999999999999999999865
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-21 Score=133.65 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=61.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
+.....+|.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||+|+|++.+..
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHhhh
Confidence 3445567899999999999999999985 8999999999999997 999999999999999999977654
No 37
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=3.6e-21 Score=132.91 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=58.7
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.+|.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||||+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhHh
Confidence 46799999999999999999985 9999999999999997 999999999999999999987654
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=4e-21 Score=127.08 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=54.3
Q ss_pred CCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 27 GTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 27 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
+.++.|+.||++|+.+||..|.. ++||+..++.+||..|+ |++.+|++||||||+|+|
T Consensus 1 g~rr~Rt~~t~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 1 GRRKPRVLFSQAQVYELERRFKQ-QRYLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 35789999999999999999998 49999999999999997 999999999999999986
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.81 E-value=3.4e-21 Score=129.74 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=49.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|++||||||||+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999984 9999999999999997 9999999999999999998754
No 40
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.6e-21 Score=141.16 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 17 AGNGNDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 17 ~gg~~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+++++++....+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|+|+..
T Consensus 14 ~~~~~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 14 VLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------------CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhc
Confidence 3444455566677899999999999999999984 9999999999999997 999999999999999999865
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=5.9e-21 Score=140.02 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
+....++.|+.||.+|+.+||..|.. ++||+..+|.+||..|+ |++.+|+|||||||||+|++.+.
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHF-NKYLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhcc
Confidence 34567789999999999999999988 49999999999999997 99999999999999999998764
No 42
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=143.13 Aligned_cols=75 Identities=15% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcc-------------cC----CCCCCcceeccCcchhh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSF-------------YG----KIESKNVFYWFQNHKAR 87 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~-------------~g----~L~e~qVqvWFQNRRAR 87 (180)
....+|.|+.||++|+.+||..|..+ +||+.++|++||..|+. || .|++.+|+|||||||+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34567799999999999999999985 89999999999999942 44 79999999999999999
Q ss_pred HHHhhhhhccccc
Q 036802 88 ERQKRRKVSVDYD 100 (180)
Q Consensus 88 eKRk~r~~~~d~~ 100 (180)
+|++++...+.++
T Consensus 82 ~kr~~~~~~~~~~ 94 (102)
T 2da6_A 82 EAFRQKLAMDAYS 94 (102)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHhhHhhhcccc
Confidence 9999888765544
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.2e-20 Score=131.80 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=57.0
Q ss_pred CccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.+.|+.||++|+.+||..|...++||+..+|.+||..|+ |++.+|+|||||||||+|+..+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhccCC
Confidence 468999999999999999984249999999999999997 999999999999999999987543
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.2e-20 Score=131.27 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=56.0
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 30 CGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
+.|+.||++|+.+||..|...++||+..+|.+||..|+ |++.+|+|||||||||+|++...
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhccC
Confidence 57999999999999999985249999999999999997 99999999999999999997743
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.9e-20 Score=130.40 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTS--GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~--~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
+.....++.|+.||++|+.+||..|.. .++||+.+++.+||..++ |++.+|+|||||||+|+|+...+
T Consensus 2 ~~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 2 SSGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhccccccc
Confidence 344567789999999999999999975 259999999999999997 99999999999999999987543
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=131.06 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
-.+.++.|+.||++|+.+||..|..+ +||+..++.+||..|+ |++.+|+|||||||+|+|+.+...
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhCcCC
Confidence 35667899999999999999999985 9999999999999997 999999999999999999976544
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.80 E-value=1e-20 Score=127.20 Aligned_cols=58 Identities=16% Similarity=0.360 Sum_probs=47.5
Q ss_pred CCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 27 GTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 27 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
..++.|+.||++|+.+||..|..+ +||+..++..||..|+ |++.+|+|||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 457899999999999999999985 9999999999999997 999999999999999976
No 48
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-20 Score=132.94 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSG--LRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~--~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
|.+...+++|+.||.+|+.+||..|... ++||+.++|.+||..++ |++.||+|||||||+|.|+...+...
T Consensus 2 s~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 2 SSGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 3455667799999999999999999763 59999999999999997 99999999999999999987666543
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=125.04 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 33 WNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
|.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 579999999999999985 9999999999999997 99999999999999999985
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.79 E-value=3e-20 Score=129.41 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=58.5
Q ss_pred CCccCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 28 TKCGRWNPTSEQVKVLTDLF---TSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F---~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
++|.|+.||++|+.+||..| .. ++||+..++..||..|+ |++.+|+|||||||+|+|+......
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhcc-CCCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccccccccc
Confidence 46899999999999999999 66 59999999999999997 9999999999999999998776653
No 51
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=132.32 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=58.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
+.-.+.++..||++||.+||..|..+ +||+..+|.+||..|+ |++++|+|||||||||+|++......
T Consensus 10 p~~~p~k~k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 10 PDFAPQKFKEKTQGQVKILEDSFLKS-SFPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp SCCCSSCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred CCCCccccccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 33333455669999999999999984 9999999999999997 99999999999999999987766543
No 52
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=8.5e-20 Score=131.92 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=54.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.|..||++||.+||..|..+ +||+.++|.+||..++ |++++|+|||||||+|+|+...+-
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHHHHHH
Confidence 56679999999999999984 9999999999999997 999999999999999999875544
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=3.5e-20 Score=125.91 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=54.4
Q ss_pred CCccCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 28 TKCGRWNPTSEQVKVLTDLF---TSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F---~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
.++.|+.||++|+.+||..| .. ++||+.+++.+||..|+ |++.+|+|||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhcc
Confidence 46799999999999999999 66 59999999999999997 9999999999999999986
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.77 E-value=1.1e-19 Score=129.96 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=57.4
Q ss_pred CCccCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhc
Q 036802 28 TKCGRWNPTSEQVKVLTDLF---TSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVS 96 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F---~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~ 96 (180)
.+|.|+.||++|+.+||..| .. ++||+.+++.+||..|+ |++.+|+|||||||+|+|+......
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~-~~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTT-SCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhcccccc
Confidence 36899999999999999999 66 59999999999999997 9999999999999999999776553
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.76 E-value=1.2e-19 Score=121.81 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=52.8
Q ss_pred cCCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 31 GRWNPTSEQVKVLTDLFTSG--LRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~--~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
+|+.||++|+.+||..|..+ ++||+.+++.+||..++ |++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHcccccC
Confidence 47899999999999999982 49999999999999997 99999999999999999974
No 56
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.4e-19 Score=130.18 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=55.8
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhH
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTS-GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARE 88 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~-~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRARe 88 (180)
++....+|+||.||.+||.+|+..|+. + +||+.+.|++||.+|+ |++++|+|||||||.--
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~tG----L~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQLD----LPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhC----CCHHHHHHhhccceeee
Confidence 344578899999999999999999998 6 9999999999999997 99999999999999754
No 57
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.76 E-value=1.2e-19 Score=143.81 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=54.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
....+|.|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||||+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 34667899999999999999999984 9999999999999997 99999999999999999985
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.76 E-value=1.2e-19 Score=142.41 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=55.2
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.....+|+|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++++|+|||||||||+||++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhccC
Confidence 345567799999999999999999984 9999999999999997 999999999999999999863
No 59
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.76 E-value=9.6e-20 Score=136.28 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccc--------------CC---CCCCcceeccCcchhh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFY--------------GK---IESKNVFYWFQNHKAR 87 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~--------------g~---L~e~qVqvWFQNRRAR 87 (180)
.+..+|.||.||++|+.+||..|.. ++||+..+|.+||..++.. .+ |++.+|+||||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 4567789999999999999999998 4999999999999994311 23 9999999999999999
Q ss_pred HHHhhhhhccc
Q 036802 88 ERQKRRKVSVD 98 (180)
Q Consensus 88 eKRk~r~~~~d 98 (180)
+|+++....+.
T Consensus 85 ~k~k~~~~~~~ 95 (99)
T 1lfb_A 85 EAFRHKLAMDT 95 (99)
T ss_dssp TSCCC------
T ss_pred HHHhchhhhcc
Confidence 99887665443
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=139.48 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=57.5
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
.....+|.|+.||.+|+.+||..|.. ++||+..+|.+||..|+ |++++|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEK-NPLPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 34567789999999999999999998 49999999999999997 9999999999999999986
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=6.3e-19 Score=130.09 Aligned_cols=64 Identities=20% Similarity=0.387 Sum_probs=57.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcccc
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSVDY 99 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~d~ 99 (180)
..-.||.+||.+||..|..+ +||+..+|.+||..|+ |++++|+|||||||||+|++.+....+.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~~~~~~~ 77 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNS-SVLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEEKMEIDE 77 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred hhccCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHHHhhccc
Confidence 34489999999999999984 9999999999999997 9999999999999999999877766543
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-19 Score=123.81 Aligned_cols=55 Identities=18% Similarity=0.348 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 32 RWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
+..|+++|+.+||..|.. ++||+..+|.+||..|+ |++++|+|||||||||+++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL-NAQPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCCC
Confidence 445689999999999988 59999999999999997 99999999999999998874
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.74 E-value=3e-19 Score=142.95 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=51.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
....+|+|+.||.+|+.+||..|..+ +||+..+|.+||..|+ |++++|+|||||||||+||+...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccCC
Confidence 45667899999999999999999984 9999999999999997 99999999999999999997654
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.74 E-value=7.3e-19 Score=126.41 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=55.1
Q ss_pred CCCCccCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 26 TGTKCGRWNPTSEQVKVLTDLFTS---GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 26 ~~~kR~Rt~fT~eQL~~LE~~F~~---~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
...+++|+.||++|+.+||..|.. + +||+..+|.+||..|+ |++.+|+|||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccC
Confidence 345668999999999999999988 5 9999999999999997 9999999999999999873
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.6e-19 Score=126.16 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=53.2
Q ss_pred CccCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 29 KCGRWNPTSEQVKVLTDLF-TSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F-~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+.|..+|.+|+.+||..| .. ++||+..+|.+||..|+ |++++|+|||||||||+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~-~~yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV-TKYPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT-CSSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCCCC
Confidence 3467778999999999999 77 59999999999999997 999999999999999999753
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.73 E-value=8.7e-19 Score=125.47 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=53.1
Q ss_pred ccCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 30 CGRWNPTSEQVKVLTDLFTS---GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~---~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
++|+.||.+|+.+||..|.. + +||+..++.+||..++ |++.+|+|||||||+|+|+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccc
Confidence 46677999999999999987 5 9999999999999997 999999999999999999864
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.72 E-value=7.7e-19 Score=138.61 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=54.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 23 NSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 23 s~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
......+|.|+.||++|+.+||..|..+ +||+..+|.+||..|+ |++.+|+|||||||+|.|+....
T Consensus 92 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 92 DRGNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQLG----LELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC---
T ss_pred cCCCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHC----cCHHHhhhcChhhhccccccCCC
Confidence 3455678899999999999999999995 9999999999999997 99999999999999999986543
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-18 Score=122.38 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 38 EQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
+|+.+||..|...++||+..+|.+||.+|+ |+++||+|||||||+|+|+.
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccCCC
Confidence 589999999954458999999999999997 99999999999999999863
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1e-18 Score=123.26 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
..|++|+.+||..|..+ +||+..+|.+||..|+ |++++|+|||||||||+|++....
T Consensus 10 ~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ-KYLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhhhh
Confidence 46999999999999985 9999999999999997 999999999999999999977554
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.70 E-value=2.6e-18 Score=135.76 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=56.6
Q ss_pred CCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 26 TGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 26 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
...+|.|+.||++|+.+||..|.. ++||+..+|.+||..|+ |++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK-SPKPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT-CSCCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHcC----CChhheeeccccccccccCC
Confidence 567789999999999999999988 49999999999999997 99999999999999999974
No 71
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=5.8e-18 Score=120.01 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 35 PTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
-|++||.+||..|..+ +||+..+|.+||..|+ |++++|++||||||+|+|+-.
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhccC
Confidence 3899999999999985 9999999999999996 999999999999999999754
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=1.5e-17 Score=137.30 Aligned_cols=66 Identities=15% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcc-------------cCC----CCCCcceeccCcchhh
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSF-------------YGK----IESKNVFYWFQNHKAR 87 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~-------------~g~----L~e~qVqvWFQNRRAR 87 (180)
....+|.|+.||+.|+.+||..|.. ++||+..+|.+||..|+. ||- |++.+|+|||||||++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~-~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHH-HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3556789999999999999999998 499999999999999972 333 8999999999999999
Q ss_pred HHHh
Q 036802 88 ERQK 91 (180)
Q Consensus 88 eKRk 91 (180)
+|.+
T Consensus 191 ~k~~ 194 (194)
T 1ic8_A 191 EAFR 194 (194)
T ss_dssp CC--
T ss_pred hhcC
Confidence 8753
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=5.5e-17 Score=112.51 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhh
Q 036802 34 NPTSEQVKVLTDLFT---SGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKV 95 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~---~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~ 95 (180)
.||++|+.+|+..|. . ++||+.+++.+||..++ |++.+|++||||||+|.|+.....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~-~pyp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLT-HPYPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHHHH
Confidence 789999999999998 7 59999999999999996 999999999999999999865543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=127.11 Aligned_cols=64 Identities=14% Similarity=0.353 Sum_probs=54.2
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcc-------------c----CCCCCCcceeccCcchh
Q 036802 24 SDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSF-------------Y----GKIESKNVFYWFQNHKA 86 (180)
Q Consensus 24 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~-------------~----g~L~e~qVqvWFQNRRA 86 (180)
.....+|.|+.||++|+.+||..|.. ++||+..+|.+||..++. | ..|++.+|+|||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 35667889999999999999999998 599999999999999872 1 24899999999999999
Q ss_pred hH
Q 036802 87 RE 88 (180)
Q Consensus 87 Re 88 (180)
++
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 75
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-15 Score=105.30 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhH
Q 036802 35 PTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARE 88 (180)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRARe 88 (180)
+=++|+.+||.+|..+ ++|+.++|++||..|+ |+.++|+|||||||++.
T Consensus 12 ~~k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMN-MEPNSDELLKISIAVG----LPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp SSTHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC----CCHHHHHHHHhhccccc
Confidence 4579999999999995 9999999999999997 99999999999999843
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.42 E-value=1.2e-14 Score=122.91 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=52.8
Q ss_pred CCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
.++.|..++.+|+..||+.|..+ +||+..+|.+||.+|+ |+++||+|||||||+|.|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 34678899999999999999984 9999999999999997 999999999999999976
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=102.77 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 33 WNPTSEQVKVLTDLFTSG--LRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~~--~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
.-|+++|+.+|+..|... ++||+.+++.+||..++ |++.||++||||||+|.++...+...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRKDG 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 568999999999999762 49999999999999996 99999999999999999987765543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.89 E-value=2.5e-10 Score=72.77 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=21.0
Q ss_pred CcceeccCcchhhHHHhhhhhccc
Q 036802 75 KNVFYWFQNHKARERQKRRKVSVD 98 (180)
Q Consensus 75 ~qVqvWFQNRRAReKRk~r~~~~d 98 (180)
+||+|||||||||+|++......+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~ 24 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARD 24 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTT
T ss_pred CCceeccHHHHHHHHHHhHHHHHH
Confidence 589999999999999999886544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.49 E-value=0.34 Score=34.51 Aligned_cols=41 Identities=15% Similarity=0.408 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 37 SEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 37 ~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
+-=.+.|+++|... +.+..++...|..+-. |+-.+|+-||-
T Consensus 15 p~~~e~L~~Yy~~h-k~L~EeDl~~L~~ksk----ms~qqvkdwFa 55 (70)
T 2ys9_A 15 PPDIQPLERYWAAH-QQLRETDIPQLSQASR----LSTQQVLDWFD 55 (70)
T ss_dssp CCCCHHHHHHHHHT-CCCCTTHHHHHHHHTT----CCHHHHHHHHH
T ss_pred CCcchHHHHHHHHh-cccchhhHHHHHHHhC----CCHHHHHHHHH
Confidence 33457899999985 8999999999999986 89999999994
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=82.88 E-value=0.014 Score=45.11 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=20.9
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCH
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPST 56 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~ 56 (180)
..+.+|+|+.||.+|+++|+..|+. ++||+.
T Consensus 133 ~~~~~rprt~~~~~q~~~l~~~f~~-~~~~~~ 163 (169)
T 2rgt_A 133 GSGGSGGGTPMVAASPERHDGGLQA-NPVEVQ 163 (169)
T ss_dssp --------EEEECCCCEECCSSCCC-CCCCCC
T ss_pred CCCCcCCCCcccHHHHHHHHHHHhC-CCCccc
Confidence 3677899999999999999999987 589874
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=77.27 E-value=1.2 Score=30.61 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRR 93 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r 93 (180)
.+++.|..+|.-.|..+ +. ..+||..|+ |+...|+++...=|.+.|+.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g--~s----~~eIA~~lg----is~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG--WS----TAQIATDLG----IAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSC--CC----HHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CC----HHHHHHHHC----cCHHHHHHHHHHHHHHHHHHHH
Confidence 36788888998877665 43 248899997 9999999887665555555433
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=75.63 E-value=1.2 Score=28.45 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 32 RWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
|..||++.......++..+ .+......+||.+++ |+...|+.|-.
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~g----Is~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKYN----IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHTT----SCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHHC----cCHHHHHHHHH
Confidence 5578999987776667654 331122458999997 89999999964
No 83
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.18 E-value=2.5 Score=27.98 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=36.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCc-ceeccCcch
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKN-VFYWFQNHK 85 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~q-VqvWFQNRR 85 (180)
....+...-.+|++...+++..|.. ||. .=..||..|. +=+..+ |..|+.+++
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~---~gk--~w~~Ia~~l~---~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQ---HPK--NFGLIASYLE---RKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHH---STT--CHHHHHHHCT---TSCHHHHHHHHHHHTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHH---hCC--CHHHHHHHcC---CCCHHHHHHHHHHhcC
Confidence 3444456667799999999999986 664 3567887775 233333 668877665
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.09 E-value=1.4 Score=28.00 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
.+++.|..+|.-.|..+ ++. .+||..|+ ++...|+.|...=+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g--~s~----~eIA~~lg----is~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--LSY----ADAAAVCG----CPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--CCH----HHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHHHH
Confidence 36899999999988664 433 38899997 899999987654444333
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.08 E-value=0.96 Score=26.72 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
.++++|...+-.++..+ . + ..+||..|+ |+...|+.|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~-s---~~~ia~~lg----vs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H-P---RQQLAIIFG----IGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C-C---HHHHHHTTS----CCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHHC----CCHHHHHHHHHHccc
Confidence 45677777776777654 2 2 357899986 899999999975443
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=70.89 E-value=2.1 Score=29.41 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.1
Q ss_pred CccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
++.+..+|+++....-..+..+ . + ..+||..++ |+...|+.|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~-s---~~~iA~~~g----Is~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--E-S---KASVARDIG----VPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--C-C---HHHHHHHHT----CCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--C-C---HHHHHHHHC----cCHHHHHHHH
Confidence 3456788999965555566553 3 2 448899997 9999999996
No 87
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=68.48 E-value=8.1 Score=26.99 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=39.6
Q ss_pred CccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 29 KCGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
.+....+|++|+..|.++|.. ++.+.+..+...+-..|+. .+++..|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY--MPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTC--CCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 345678999999999999963 3478999998888888763 57777777665
No 88
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=68.40 E-value=2 Score=29.22 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCccee
Q 036802 33 WNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFY 79 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqv 79 (180)
|.+|++|+..+.++|.. ++.+.+.++...+-..++ +++..|..
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~~ 47 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK----LPILELSH 47 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS----SCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC----CCHHHHHH
Confidence 88999999999999974 235677777776666553 66555543
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=68.18 E-value=2.1 Score=30.49 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
.+++.|..+|. .|-.+ ++. .+||..|+ |+...|+.+.+.=|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~s~----~EIA~~lg----is~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--YSY----REIATILS----KNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--CCH----HHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--CCH----HHHHHHHC----CCHHHHHHHHHHHHHHHHHH
Confidence 57888888888 66554 433 37899997 99999988776555444443
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.51 E-value=3.3 Score=23.68 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
.+++++...+-.++..+ + + ..+||..|+ |+...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~-s---~~~IA~~lg----is~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V-S---LHEMSRKIS----RSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHHT----CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHHC----cCHHHHHHHHhh
Confidence 46788776666667654 3 2 447899997 899999999753
No 91
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=63.21 E-value=5.3 Score=28.48 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=37.5
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 30 CGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
+.|..+|.++...+=..+..+ ..++. .+||..++ |+...|..|..++.....
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~g----vs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRFN----IPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHHT----CCHHHHHHHHHTHHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHhC----CCHHHHHHHHhchhhhcc
Confidence 367889999997776666432 34443 36888886 999999999877665433
No 92
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=63.07 E-value=13 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.9
Q ss_pred cCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhc
Q 036802 31 GRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~ 67 (180)
+|..+|++|++.|..+|.. ++.+.+..+...+-..|+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 5677999999999999963 457899988877777776
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=62.11 E-value=3.4 Score=30.28 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~ 92 (180)
.+++.|..++.-.|..+ ++. .+||..|+ ++...|+.|.+.=|.+.++.-
T Consensus 22 ~L~~~~r~vl~l~y~~g--~s~----~EIA~~lg----iS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--YSL----AEIADEFG----VSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--CCH----HHHHHHHT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988765 433 38899997 999999999876665555543
No 94
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=56.53 E-value=2.6 Score=30.25 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=34.6
Q ss_pred CCCCccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 26 TGTKCGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 26 ~~~kR~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
.......|.+|++|+..|.++|.. ++.+.+.++...+ |... ++++..|..+|
T Consensus 7 ~~~~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~---l~~~-gl~~~el~~i~ 62 (110)
T 1iq3_A 7 SSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNF---FTKS-KLSIPELSYIW 62 (110)
T ss_dssp CCCCCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHH---CCSS-SCSSCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHH---HHHc-CCCHHHHHHHH
Confidence 334447899999999999999964 2356676655444 4433 37777766444
No 95
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=55.80 E-value=4.9 Score=29.20 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRK 94 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~ 94 (180)
.+++.|..+|.-.|..+ ++. .+||..|+ ++...|+.+...=|.+.++.-..
T Consensus 25 ~L~~~~r~vl~l~~~~g--~s~----~EIA~~lg----iS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED--YSL----SEIADTFN----VSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSC--CCH----HHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999988765 433 38899997 89999999887666666554433
No 96
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=55.38 E-value=3.7 Score=28.10 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 33 WNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
|.+|++|...|..+|.. ++.+.+.++...+-..++ +++..|..+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG----LPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT----CCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC----CCHHHHHHHH
Confidence 78899999999999953 346788877766655543 6665555433
No 97
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.87 E-value=2.6 Score=25.99 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=29.9
Q ss_pred CCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 33 WNPT--SEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 33 t~fT--~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
+.++ +++...+-.++..+ + + ..+||..|+ ++...|+.|..
T Consensus 12 ~~l~~~~~~~~~i~~l~~~g--~-s---~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 12 YYVESEDDLVSVAHELAKMG--Y-T---VQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp EEECSHHHHHHHHHHHHHTT--C-C---HHHHHHHHT----SCHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHcC--C-C---HHHHHHHHC----cCHHHHHHHHH
Confidence 3567 88888887777654 3 2 347899997 89999998874
No 98
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=54.68 E-value=8.8 Score=27.42 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=31.6
Q ss_pred cCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhcccCCCCCCcce
Q 036802 31 GRWNPTSEQVKVLTDLFTS---GLRTPSTDQIQKISTQLSFYGKIESKNVF 78 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~---~~~yPs~~~r~eLA~~L~~~g~L~e~qVq 78 (180)
..|.+|++++..+..+|.. ++.+.+.++...+-..++ +++..|.
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~g----l~~~el~ 51 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK----LPVDILG 51 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTT----CCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcC----CCHHHHH
Confidence 3589999999999999964 446778777666655543 6666555
No 99
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.73 E-value=5.8 Score=29.33 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 35 PTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
+++.|..+|.-.|-.+ ++. .+||..|+ |++..|+.+.+.=|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g--~s~----~EIA~~lg----is~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--LSY----EEIAAIMD----CPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC--CCH----HHHHHHTT----SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--CCH----HHHHHHHC----CCHHHHHHHHHHHHHHHHH
Confidence 4666777777766554 433 37899997 8999999887655555544
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.60 E-value=6 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 32 RWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
-..+|+.|..+|.-+ ..+ + + ..+||..|+ ++...|+.+..+=+.|
T Consensus 9 ~~~L~~~e~~il~~~-~~g--~-s---~~eIA~~l~----is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQD--K-T---TKEIASELF----ISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTT--C-C---HHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HcC--C-C---HHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 356899999999985 343 4 2 247899997 8999998877643433
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=48.12 E-value=7.7 Score=29.36 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 91 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk 91 (180)
.+++.|..+|.-.|-.+ ++. .+||..|+ |+...|+.+...=|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g--~s~----~EIA~~lg----is~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--LPA----KEVAKILE----TSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--CCH----HHHHHHTT----SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--CCH----HHHHHHhC----CCHHHHHHHHHHHHHHHHHH
Confidence 36777778888777554 433 37899996 89999998876555555543
No 102
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.80 E-value=28 Score=26.13 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhcccCCCCCCc
Q 036802 19 NGNDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPST-DQIQKISTQLSFYGKIESKN 76 (180)
Q Consensus 19 g~~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~-~~r~eLA~~L~~~g~L~e~q 76 (180)
|.+++..........-.|.+|+++=+.++..+ .|+. +.+..|++..+ +++..
T Consensus 4 ~~~~~~~~~~~~~~~~aTaeQ~rLAq~i~~~~--d~d~eekVk~L~EmtG----~seee 56 (104)
T 1wj7_A 4 GSSGNQNQTQHKQRPQATAEQIRLAQMISDHN--DADFEEKVKQLIDITG----KNQDE 56 (104)
T ss_dssp CCCCSCCCCTTCCSSSSSHHHHHHHHHHHHSC--CHHHHHHHHHHHHHTC----CCHHH
T ss_pred CCCCCCccCccccccccCHHHHHHHHHHhcCC--cccHHHHHHHHHHhhC----CCHHH
Confidence 34455555666688899999999999998663 4543 34555555433 55544
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.29 E-value=8 Score=25.19 Aligned_cols=45 Identities=4% Similarity=0.004 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhH
Q 036802 34 NPTSEQVKVLTDLFT----SGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARE 88 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~----~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRARe 88 (180)
.+++.|..+|.-.|. .+ + +. .+||..|+ ++...|+.|...=+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~--~-s~---~eIA~~l~----is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE--H-TL---EEVGAYFG----VTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--C-CH---HHHHHHHT----CCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC--C-CH---HHHHHHHC----CCHHHHHHHHHHHHHHH
Confidence 478999999999996 43 2 22 37899997 89999998764433333
No 104
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=45.75 E-value=24 Score=24.01 Aligned_cols=47 Identities=4% Similarity=0.036 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 35 PTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 35 fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
||++|++.|..+|.. ++.+.+..+...+...++. .+++..|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 689999999999964 2467888887777777753 4566667766655
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.62 E-value=6.3 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcc
Q 036802 34 NPTSEQVKVLTDLF----TSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNH 84 (180)
Q Consensus 34 ~fT~eQL~~LE~~F----~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNR 84 (180)
.+++.|..+|.-.| ..+ +.. .+||..|+ ++...|+.+-..=
T Consensus 5 ~L~~~er~il~l~~~l~~~~g--~s~----~eIA~~lg----is~~tV~~~~~ra 49 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD--YTL----EEVGKQFD----VTRERIRQIEAKA 49 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC--CCH----HHHHHHHT----CCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC--CCH----HHHHHHHC----cCHHHHHHHHHHH
Confidence 47899999999999 333 322 47899997 8999998765433
No 106
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.33 E-value=4.7 Score=27.33 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=33.2
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 30 CGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
..-..+|+.|.++|.-++ .+ +.. .+||..|+ |+...|+.+..+=+.|
T Consensus 17 ~~~~~Lt~~e~~vl~l~~-~g--~s~----~eIA~~l~----is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIA-QG--LPN----KMIARRLD----ITESTVKVHVKHMLKK 63 (82)
T ss_dssp CCGGGSCHHHHHHHHHHT-TT--CCH----HHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 334468999999999854 43 322 38899997 8999998776543333
No 107
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.86 E-value=7.5 Score=29.17 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhc
Q 036802 32 RWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~ 67 (180)
+..+|++|++.|.++|.. ++.+.+..+...+-..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 467999999999999963 346888888777777665
No 108
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=43.18 E-value=24 Score=24.32 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHhcccCCCCCCcce
Q 036802 34 NPTSEQVKVLTDLFTSGLRTP--STDQIQKISTQLSFYGKIESKNVF 78 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yP--s~~~r~eLA~~L~~~g~L~e~qVq 78 (180)
.+|.++.+.||.+... || +...=..||..|+ =+..+|+
T Consensus 10 ~WT~eE~k~fe~al~~---~p~~t~~RW~~IA~~lg----Rt~~eV~ 49 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVK---FPGGTPGRWEKIAHELG----RSVTDVT 49 (72)
T ss_dssp CCCHHHHHHHHHHHHH---SCTTCTTHHHHHHHHHT----SCHHHHH
T ss_pred CCCHHHHHHHHHHHHH---CCCCCCcHHHHHHHHhC----CCHHHHH
Confidence 4599999999999865 55 2344668999985 2555565
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.87 E-value=11 Score=26.53 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 33 WNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
..+|.++...+-.++..+ .. ..+||..|+ ++...|+.|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s----~~~ia~~lg----is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS----LHEMSRKIS----RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC----HHHHHHHHT----CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--CC----HHHHHHHHC----cCHHHHHHHHHc
Confidence 457899988888888765 32 347899996 899999999864
No 110
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=42.60 E-value=3.8 Score=30.17 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=17.5
Q ss_pred HHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 61 KISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 61 eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
+||..|+ +++..|+++.+.=|.+.|+
T Consensus 156 eIA~~lg----is~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETG----LPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCC----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 5666665 8999998877655555443
No 111
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=42.20 E-value=12 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcc
Q 036802 32 RWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNH 84 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNR 84 (180)
...+|+.|.++|.-++ .+ +.. .+||..|+ |++..|+++.++=
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s~----~EIA~~L~----iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FLV----TEIAKKLN----RSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CCH----HHHHHHHT----SCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHH
Confidence 4568999999998866 44 333 48999997 8999999876543
No 112
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.58 E-value=5.9 Score=27.03 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 33 WNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
..+|+.|..+|.-++ .+ +... +||..|+ |+...|+++..+=+.|
T Consensus 28 ~~Lt~~e~~vl~l~~-~g--~s~~----eIA~~l~----is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-KG--YSNQ----EIASASH----ITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHH-TT--CCTT----HHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH-cC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHH
Confidence 357999999998854 44 4444 7899997 8999999876543333
No 113
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=41.39 E-value=11 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 32 RWNPTSEQVKVLTDLFT-S-GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~-~-~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
|..+|+++....-..+. . + . ...+||..++ |+...|+.|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--~----s~~~ia~~~g----Is~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--A----SLQQIANDLG----INRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--S----CHHHHHHHHT----SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--C----hHHHHHHHHC----cCHHHHHHHHH
Confidence 45689988866555553 3 3 2 2458899996 89999999953
No 114
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=41.14 E-value=9.4 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHH
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARER 89 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReK 89 (180)
.+|+.|.++|.-++ .+ +.. .+||..|+ |+...|+++..+=+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~-~g--~s~----~eIA~~l~----is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLS-EG--LTN----KQIADRMF----LAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHH-TT--CCH----HHHHHHHT----CCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHHHc
Confidence 57999999999974 43 332 48999997 899999977654444433
No 115
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=40.34 E-value=7.3 Score=28.70 Aligned_cols=41 Identities=7% Similarity=0.215 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+....++|... .| ..-...+||+..+ ++...|+..|.|+-.
T Consensus 36 l~aa~~l~~~~-G~-~~~ti~~IA~~ag----vs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 36 LTAARVCFAER-GF-DATSLRRIAETAG----VDQSLVHHFYGTKEN 76 (212)
T ss_dssp HHHHHHHC---------------------------------CCC-CH
T ss_pred HHHHHHHHHHc-Cc-ccccHHHHHHHcC----CCHHHHHHHhCCHHH
Confidence 55666778663 45 4456678999986 999999999999853
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.60 E-value=5.7 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcch
Q 036802 35 PTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHK 85 (180)
Q Consensus 35 fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRR 85 (180)
+|+.|..+|.-++ .+ +.. .+||..|+ ++...|+.+..+=+
T Consensus 17 L~~~e~~vl~l~~-~g--~s~----~eIA~~l~----is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAVV-AG--LPN----KSIAYDLD----ISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHHT-TT--CCH----HHHHHHTT----SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHH
Confidence 6889999998853 43 433 38899996 89999987665433
No 117
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=39.52 E-value=20 Score=24.29 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 35 PTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 35 fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
+|++|++.|..+|.. ++.+.+..+...+...++. .+++..|...|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ--NPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 689999999999952 3357777777776666642 34555566555
No 118
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=38.28 E-value=21 Score=24.63 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=34.1
Q ss_pred ccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 30 CGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
..+..+|++|+..|..+|.. ++.+.+..+...+...++. ++++..|...|
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~ 65 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGF--ELPKREILDLI 65 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTC--CCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 35678999999999999963 3467788887777666641 34444444333
No 119
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=37.94 E-value=14 Score=27.30 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 34 NPTSEQVKVLTDLFTS------GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~------~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
-+|++|++.|.++|.. ++.+.+..+...+-+.|+. ++++..|+..+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~--~~t~~el~~~~ 53 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGM--NPTEAQVHQHG 53 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTC--CCCHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 4799999999999962 3467888877777677752 34555555433
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.37 E-value=9 Score=23.67 Aligned_cols=40 Identities=25% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhH
Q 036802 38 EQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARE 88 (180)
Q Consensus 38 eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRARe 88 (180)
.|.++|.- +..+ +... +||..|+ +++..|+.+..+=+.|.
T Consensus 2 re~~vl~l-~~~g--~s~~----eIA~~l~----is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 2 RERQVLKL-IDEG--YTNH----GISEKLH----ISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HHTS--CCSH----HHHHHTC----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcC--CCHH----HHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 46778877 4454 5454 8999997 89999998766444333
No 121
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=36.44 E-value=11 Score=24.09 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 34 NPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
.+|++|+..|..+|.. ++.+.+..+...+...++ .+++..|..+|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG---SVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT---TCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC---CCCHHHHHHHH
Confidence 5799999999999953 335677777666555543 45555555444
No 122
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.34 E-value=11 Score=25.52 Aligned_cols=40 Identities=5% Similarity=0.115 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 34 NPTSEQVKVLTDLFT----SGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~----~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
.+++.|..+|.-.|. .+ + + ..+||..|+ |+...|+.+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~--~-s---~~EIA~~lg----is~~tV~~~~~r 61 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP--K-T---LEEVGQYFN----VTRERIRQIEVK 61 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--C-C---HHHHHHHHT----CCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCC--C-C---HHHHHHHHC----CCHHHHHHHHHH
Confidence 468899999999986 33 3 2 237899996 999999987543
No 123
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=35.86 E-value=22 Score=24.58 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHH-HHHHhcCCCCCCH-HHHHHHHHHhcccCCCCCCcceecc
Q 036802 32 RWNPTSEQVKVL-TDLFTSGLRTPST-DQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 32 Rt~fT~eQL~~L-E~~F~~~~~yPs~-~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
+..||+++.... +.+...+..+++. ....+||..++ |+...|+.|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~g----Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIG----CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHC----cCHHHHHHHH
Confidence 446899988544 4444431113332 45778999997 8999999995
No 124
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=35.11 E-value=8 Score=29.14 Aligned_cols=43 Identities=5% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
.+++.|..+|.-.|-.+ + ...+||..|+ |+...|+.+...=+.
T Consensus 198 ~L~~~~r~vl~l~~~~g--~----s~~EIA~~lg----is~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD--Q----TQSEVASRLG----ISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC--C----CHHHHHHHHC----cCHHHHHHHHHHHHH
Confidence 35677777777766543 3 2348899997 899999988765443
No 125
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=35.04 E-value=15 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 036802 31 GRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKIST 64 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~ 64 (180)
.-|.+|++|...|..+|.. ++.+.+.++...+..
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 5699999999999999964 235667766655544
No 126
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.85 E-value=1.1e+02 Score=20.93 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 036802 21 NDNSDTGTKCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKIST 64 (180)
Q Consensus 21 ~gs~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~ 64 (180)
+|+.....++.+-...++++..|..+| |..+.+.|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~L~~MF----P~lD~~vI~~vL~ 42 (67)
T 2dhy_A 3 SGSSGRPARQVRRLEFNQAMDDFKTMF----PNMDYDIIECVLR 42 (67)
T ss_dssp CSCCCCCCCCCCCCCSHHHHHHHHHHC----SSSCHHHHHHHHH
T ss_pred CCCCCCcchhccCCCHHHHHHHHHHHC----CCCCHHHHHHHHH
Confidence 445555555667777888999999998 3456666665443
No 127
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=34.64 E-value=34 Score=23.75 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 33 WNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
..+|++|+..|..+|.. ++.+.+..+...+...++. .+++..|...|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGR--APDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSS--CCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 46899999999999953 3468888888877777752 3566667777754
No 128
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=32.96 E-value=29 Score=22.08 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCc
Q 036802 32 RWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKN 76 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~q 76 (180)
...+|++|+..|..+|.. ++.+.+..+...+...++. ++++..
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~--~~~~~~ 51 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQ--TYTKRE 51 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSC--CCSHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcC--CCCHHH
Confidence 356789999999999963 3468888888777777652 344444
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.53 E-value=15 Score=25.47 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=29.9
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
.-..+|+.|..+|.-++ .+ +.. .+||..|+ |++..|++..+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~-~G--~s~----~eIA~~L~----iS~~TV~~~~~ 66 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE-KG--FTN----QEIADALH----LSKRSIEYSLT 66 (90)
T ss_dssp ---CCCHHHHHHHHHHH-TT--CCH----HHHHHHHT----CCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHH
Confidence 45578999999999887 54 433 48999997 99999986543
No 130
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=32.46 E-value=29 Score=24.51 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=28.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcc
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNV 77 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qV 77 (180)
+=..+|++|..+|..++..+ .+...+ .+||..++ |+...|
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g--~~gi~q-keLa~~~~----l~~~tv 53 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAG--NKGIWS-RDVRYKSN----LPLTEI 53 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHC--TTCEEH-HHHHHHTT----CCHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcC--CCCcCH-HHHHHHHC----CCHHHH
Confidence 34567999999999999865 333333 36888886 776655
No 131
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=32.39 E-value=21 Score=26.88 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=29.3
Q ss_pred cCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhcccCCCCCCcce-ec
Q 036802 31 GRWNPTSEQVKVLTDLFTSG---LRTPSTDQIQKISTQLSFYGKIESKNVF-YW 80 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~---~~yPs~~~r~eLA~~L~~~g~L~e~qVq-vW 80 (180)
..|..|+++...++++|..- +.|.+.++...+-..+ +|+...+. +|
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~s----gLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQS----GLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGG----CCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHc----CCCHHHHHHHH
Confidence 57999999999999999753 2345555444443333 35554433 55
No 132
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=31.87 E-value=12 Score=23.25 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhc
Q 036802 35 PTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 35 fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~ 67 (180)
+|++|+..|..+|.. ++.+.+..+...+...++
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 37 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALG 37 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC
Confidence 588999999999953 235777777777766664
No 133
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=31.26 E-value=56 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHHhhhhhcc
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSV 97 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKRk~r~~~~ 97 (180)
+++..-+|+. |+||+.+--.+ |. -|||-||+..+++...
T Consensus 18 vRiIkiLyQS-NP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI~~ 56 (72)
T 3lph_A 18 VRLIKFLYQS-NPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQIHS 56 (72)
T ss_dssp HHHHHHHHHT-CCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCCCCCchH-HH-----------------HHHHHHHHHHHHHHHH
Confidence 4677788887 59998633111 11 2899999998888743
No 134
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.76 E-value=40 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcceeccCcch
Q 036802 52 RTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHK 85 (180)
Q Consensus 52 ~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRR 85 (180)
...+.+++.+|...+.. -..-.|-.||=||+
T Consensus 57 g~Lt~~ei~~l~~~i~~---~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHN---PRQFKVPDWFLNRK 87 (152)
T ss_dssp TTSCHHHHHHHHHHHHS---CSSCCCCCCSCSCC
T ss_pred CcCCHHHHHHHHHHHHh---hcccCcchhhhhhh
Confidence 35567777777777651 11234678999987
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.55 E-value=24 Score=22.74 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 34 NPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
.+|++++..|..+|.. ++.+.+..+...+...++. ++++..|..+|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~l~ 62 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQ--NPTKEELDAII 62 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC--CCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 4799999999999963 3457788887777766641 34444454443
No 136
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=28.87 E-value=33 Score=26.07 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=32.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhcccCCCCCCcce
Q 036802 25 DTGTKCGRWNPTSEQVKVLTDLFTS---GLRTPSTDQIQKISTQLSFYGKIESKNVF 78 (180)
Q Consensus 25 ~~~~kR~Rt~fT~eQL~~LE~~F~~---~~~yPs~~~r~eLA~~L~~~g~L~e~qVq 78 (180)
..+..+..|..+ ++...|..+|.. ++.+.+.++...+-..++ +++..|.
T Consensus 36 ~~~~~~~~W~~~-~e~~~l~~~F~~fDd~dG~Is~~El~~~l~~~g----l~~~el~ 87 (139)
T 2jq6_A 36 GEGIDDVEWVVG-KDKPTYDEIFYTLSPVNGKITGANAKKEMVKSK----LPNTVLG 87 (139)
T ss_dssp CCCCSCCCCGGG-GTHHHHHHHHHHSCCSSSEEEHHHHHHHHHHTT----CCHHHHH
T ss_pred ccCccCCCCCCh-HHHHHHHHHHHHhCCCCCeECHHHHHHHHHHhC----cCHHHHH
Confidence 344555789864 789999999975 235567766665555543 7766665
No 137
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.84 E-value=56 Score=21.71 Aligned_cols=49 Identities=29% Similarity=0.242 Sum_probs=33.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHhcccCCCCCCcceeccCcch
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPS----TDQIQKISTQLSFYGKIESKNVFYWFQNHK 85 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs----~~~r~eLA~~L~~~g~L~e~qVqvWFQNRR 85 (180)
.+-.+|+++-..|.++... |+. ...=..||..|. +=+..||+.-+||-=
T Consensus 7 ~~~~WT~eEd~~L~~~v~~---~g~~~~~~~~W~~IA~~~~---~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIK---YPPEEVESRRWQKIADELG---NRTAKQVASQVQKYF 59 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHH---SCCCSCHHHHHHHHHHHHS---SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH---hCCCCCCcccHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 3445699999999998875 443 356778999985 456677775555443
No 138
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=26.11 E-value=92 Score=22.97 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=35.3
Q ss_pred CccCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHH----HhcccCCCCCCcceeccCc
Q 036802 29 KCGRWNPTSEQVKVLTDLF-TSGLRTPSTDQIQKIST----QLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 29 kR~Rt~fT~eQL~~LE~~F-~~~~~yPs~~~r~eLA~----~L~~~g~L~e~qVqvWFQN 83 (180)
+++|..+|-+|...|=..+ +.+ +..+.. +||. +.+. +|+...|..|-.|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~---~la~wa~~~f~~--~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQ---DLIEWFREKFGK--DISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHH---HHHHHHHHHHSS--CCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHH---HHHHHHHHHHCC--CCcHHHHHHHHhh
Confidence 6789999999999999999 442 444443 4566 5532 4888999988755
No 139
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.44 E-value=17 Score=29.14 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 32 RWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
--.+++.|..+|.-.+ .+ +... +||+.|+ |++..|++..++=|.|.+.
T Consensus 195 ~~~L~~~erevl~L~~-~G--~s~~----EIA~~L~----iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 195 RNILSEREKEILRCIR-KG--LSSK----EIAATLY----ISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TTSSCHHHHHHHHHHH-TT--CCHH----HHHHHHT----CCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHH-cC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHcC
Confidence 3578999999999975 44 4443 8899997 9999999766654444433
No 140
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=25.18 E-value=25 Score=22.22 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 32 RWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
...+|++|+..|..+|.. ++.+.+..+...+...++. ++++..|..+|
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~ 56 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGA--NPTKQKISEIV 56 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSS--CCCHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 346799999999999964 2346777776666555531 24444444333
No 141
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=25.12 E-value=87 Score=21.74 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhc
Q 036802 28 TKCGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 28 ~kR~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~ 67 (180)
..+.+..+|++|+..|..+|.. ++.+.+..+...+...++
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~ 58 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALG 58 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTS
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence 3456789999999999999964 345778877776666664
No 142
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=25.10 E-value=33 Score=23.74 Aligned_cols=47 Identities=30% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 33 WNPTSEQVKVLTDLFTS-----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~-----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
..+|++|+..|..+|.. ++.+.+.++...+...++. .+++..|..+|
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~ 56 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGI--QQTKSTIRQLI 56 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTC--SCSHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 35789999999999953 2356777776666555541 23444444333
No 143
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.65 E-value=47 Score=22.08 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=31.9
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcc
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNH 84 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNR 84 (180)
.+-.+|++.-..|..++.. |.. .=..||..|. +=++.+|+.-|+|-
T Consensus 8 ~~~~WT~eEd~~l~~~~~~---~G~--~W~~Ia~~~~---~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAK---FGR--RWTKISKLIG---SRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHH---TCS--CHHHHHHHHS---SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH---HCc--CHHHHHHHcC---CCCHHHHHHHHHHH
Confidence 4455699988888888875 333 3467888774 56778888766654
No 144
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=24.17 E-value=13 Score=28.45 Aligned_cols=41 Identities=10% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+..-.++|... .|- .-...+||+..+ |+...|++.|.|+-.
T Consensus 49 l~AA~~lf~~~-G~~-~~t~~~IA~~aG----vs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDR-PLA-DISVDDLAKGAG----ISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTS-CGG-GCCHHHHHHHHT----CCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-CCc-cCcHHHHHHHhC----CCHHHHHHHcCCHHH
Confidence 55666778663 453 345668999996 999999999999864
No 145
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.14 E-value=73 Score=23.25 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcc
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNH 84 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNR 84 (180)
.+|.++...+-.++..+ + + ..+||..|+ |+...|..|...-
T Consensus 25 ~~s~e~r~~ii~l~~~G--~-s---~~~IA~~lg----is~~TV~rwl~r~ 65 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG--V-R---PCDISRQLR----VSHGCVSKILGRY 65 (159)
T ss_dssp SSCHHHHHHHHHHHHHT--C-C---HHHHHHHHT----CCSHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHHC----cCHHHHHHHHHHH
Confidence 57888887777777764 3 2 347899996 8999999998753
No 146
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.88 E-value=15 Score=24.20 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 30 CGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
..-..++++++..|..+|.. ++.+.+.++...+...++ +++..|..+|
T Consensus 16 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g----~~~~~~~~~~ 67 (91)
T 2pmy_A 16 FQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR----VRPADAEAVF 67 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT----CCHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC----cCHHHHHHHH
Confidence 34456789999999999963 345788877777666653 5555554443
No 147
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=23.87 E-value=61 Score=25.17 Aligned_cols=52 Identities=8% Similarity=0.157 Sum_probs=33.5
Q ss_pred CccCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 29 KCGRWNPTSEQ-VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 29 kR~Rt~fT~eQ-L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+++|...|.++ +..-.++|... .|-. -...+||+.++ ++..-|+..|.||-.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~-G~~~-~s~~~IA~~aG----vs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTV-GERG-LTFRALAERLA----TGPGAIYWHITGKAE 62 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHT-TTTT-CCHHHHHHHHT----SCGGGGGGTCCCHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhc-Cccc-CCHHHHHHHHC----CChHHHHHhcCCHHH
Confidence 34555567665 35566777663 4544 34558999997 999999999999754
No 148
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=23.83 E-value=39 Score=24.50 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+....++|... .|-. ....+||+..+ |+...|+..|.|+-.
T Consensus 20 l~aA~~lf~~~-G~~~-~s~~~Ia~~ag----vs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQ-GYSE-TSIGDIARACE----CSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHT-CTTT-SCHHHHHHHTT----CCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHc-Cccc-CCHHHHHHHhC----CCcCeeeeeeCCHHH
Confidence 45566788774 5644 45668999986 999999999999753
No 149
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.66 E-value=88 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=31.8
Q ss_pred ccCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 30 CGRWNPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 30 R~Rt~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
...+.+|++|++.|..+|.. ++.+.+..+...+...|+. .++...|...|
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~ 58 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGR--VPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTS--CCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 35788999999999999963 3467787776655444432 24444454443
No 150
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.49 E-value=35 Score=23.08 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
.+|.++...+-.++..+ + + ..+||..|+ ++...|..|..
T Consensus 17 ~~s~~~r~~i~~~~~~g--~-s---~~~ia~~lg----is~~Tv~~w~~ 55 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG--I-R---PCVISRQLR----VSHGCVSKILN 55 (128)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHHT----CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C-C---HHHHHHHHC----cCHHHHHHHHH
Confidence 47888887777777654 3 2 347899996 89999999985
No 151
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=23.15 E-value=36 Score=31.13 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=34.2
Q ss_pred cCCCCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcccCCCCCCcceecc
Q 036802 31 GRWNPTSEQVKVLTDLFT----SGLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 81 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~----~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWF 81 (180)
.+-.+|++|++.|.++|. .++.+.+.++...+-..|+. .+++..|+.-|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~--~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ--NPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC--CCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 455678999999999996 24578888887777777752 34555554333
No 152
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.97 E-value=10 Score=28.65 Aligned_cols=41 Identities=10% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+..-.++|... .|- .-...+||+..+ |+...|+..|.|+-.
T Consensus 50 l~aA~~lf~e~-G~~-~~t~~~IA~~aG----vs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 50 LATAENLLEDR-PLA-DISVDDLAKGAG----ISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHHHS-CGG-GCCHHHHHHHHT----CCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-Ccc-cCCHHHHHHHhC----CcHHHHHHHCCCHHH
Confidence 44556677763 453 345568899986 999999999999864
No 153
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=22.89 E-value=21 Score=26.20 Aligned_cols=42 Identities=5% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
+....++|... .|- .....+||+..+ |+...|+..|.|+-.=
T Consensus 34 l~aa~~lf~~~-G~~-~~tv~~IA~~ag----vs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLARE-GAR-GLTFRAVDVEAN----VPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHT-CTT-TCCHHHHHHHSS----STTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHh-Chh-hccHHHHHHHcC----CCcchHHHhCCCHHHH
Confidence 45566788763 563 345668999986 9999999999997643
No 154
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.85 E-value=91 Score=24.09 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHhc
Q 036802 32 RWNPTSEQVKVLTDLFTSG-LRTPSTDQIQKISTQLS 67 (180)
Q Consensus 32 Rt~fT~eQL~~LE~~F~~~-~~yPs~~~r~eLA~~L~ 67 (180)
-..++++||.+|++.|... ...|+.+.+=..|-.|-
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv 51 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLI 51 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 3568999999999999763 58999999888887773
No 155
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=22.31 E-value=33 Score=23.93 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHhcccCCCCCCcceeccC
Q 036802 34 NPTSEQVKVLTDLFTS------GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQ 82 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~------~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQ 82 (180)
.+|++|++.|..+|.. ++.+.+..+...+...|+. .+++..|+..|.
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~--~~~~~~~~~l~~ 54 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGM--NPTEAQVHQHGG 54 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTC--CCCHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 5899999999999954 3356667776666666642 344455554444
No 156
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=22.29 E-value=69 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcceeccCcch
Q 036802 52 RTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHK 85 (180)
Q Consensus 52 ~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRR 85 (180)
...+.+++.+|...++. ...-.|-.||=||+
T Consensus 59 g~Lt~~ei~~l~~~i~~---~~~~~iP~w~lNR~ 89 (146)
T 3u5c_S 59 GELTQEELERIVQIMQN---PTHYKIPAWFLNRQ 89 (146)
T ss_dssp SSCCHHHHHHHHHHHTC---TTTTTCCSTTCTBC
T ss_pred ccCCHHHHHHHHHHHHh---hcccCccHHHhhhh
Confidence 45677778888777751 11233557999987
No 157
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=22.24 E-value=66 Score=22.25 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=29.1
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCccee
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFY 79 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqv 79 (180)
.+..+|++.-..|.+.... |. ..=.+||..++ +=+..||+.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~---~G--~~W~~IA~~v~---~RT~~qcr~ 57 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEM---YK--DDWNKVSEHVG---SRTQDECIL 57 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHH---SS--SCHHHHHHHHS---SCCHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHH---hC--CCHHHHHHHcC---CCCHHHHHH
Confidence 4567799999999999876 55 34568888885 345555553
No 158
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.23 E-value=35 Score=24.64 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 39 QVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 39 QL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
-+....++|... .|- .....+||+..+ |+...|+..|.|+-.=
T Consensus 18 Il~aa~~lf~~~-G~~-~~tv~~Ia~~ag----vs~~t~Y~~F~sK~~L 60 (195)
T 2iu5_A 18 IAKAFKDLMQSN-AYH-QISVSDIMQTAK----IRRQTFYNYFQNQEEL 60 (195)
T ss_dssp HHHHHHHHHHHS-CGG-GCCHHHHHHHHT----SCGGGGGGTCSSHHHH
T ss_pred HHHHHHHHHHhC-CCC-eeCHHHHHHHhC----CCHHHHHHHcCCHHHH
Confidence 356667788763 553 345668999996 9999999999997643
No 159
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=22.19 E-value=1.7e+02 Score=19.54 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhc
Q 036802 34 NPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~ 67 (180)
.+|++|++.|..+|.. ++.+.+..+...+...++
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~ 41 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMG 41 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence 5899999999999953 456888888777766664
No 160
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=22.11 E-value=28 Score=27.32 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=33.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhh
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKAR 87 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAR 87 (180)
+...+|+.|.++|.-++ .+ +.. .+||..|+ |++..|++..+|=+.|
T Consensus 172 ~~~~Lt~~e~~vl~~~~-~g--~s~----~eIa~~l~----is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 172 PKQMLSPREMLCLVWAS-KG--KTA----SVTANLTG----INARTVQHYLDKARAK 217 (236)
T ss_dssp GGGSCCHHHHHHHHHHH-TT--CCH----HHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 34568999999997765 44 433 37899996 9999999876654443
No 161
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.35 E-value=26 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+..-.++|... .| . ....+||+..+ |+...|+..|.|+-.
T Consensus 19 l~aA~~lf~~~-G~-~-~t~~~IA~~ag----vs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAE-GL-G-VPMDEIARRAG----VGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHT-CT-T-SCHHHHHHHTT----SCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhc-CC-C-CCHHHHHHHhC----CCHHHHHHHCCCHHH
Confidence 44456778774 67 5 57789999996 999999999999754
No 162
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=26.76 E-value=20 Score=23.64 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=6.8
Q ss_pred hcccccCCCCCCCC
Q 036802 11 KAGHVRAGNGNDNS 24 (180)
Q Consensus 11 ~~~~~~~gg~~gs~ 24 (180)
-+-|+|.|||+|++
T Consensus 22 hsdgggsgggsggg 35 (52)
T 2lqh_B 22 HSDGGGSGGGSGGG 35 (52)
Confidence 34444455555554
No 163
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=21.21 E-value=40 Score=21.07 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcccCCCCCCccee
Q 036802 36 TSEQVKVLTDLFT----SGLRTPSTDQIQKISTQLSFYGKIESKNVFY 79 (180)
Q Consensus 36 T~eQL~~LE~~F~----~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqv 79 (180)
|+++...|..+|. .++.+.+.++...+...++...++++..|..
T Consensus 2 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 49 (83)
T 1yx7_A 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKE 49 (83)
T ss_dssp CSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHH
T ss_pred CccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHH
Confidence 3455566777775 3346888888877777664212466666655
No 164
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.91 E-value=56 Score=23.45 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcch
Q 036802 40 VKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHK 85 (180)
Q Consensus 40 L~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRR 85 (180)
+..-.++|... .|-. -...+||+..+ |+...|+..|.|+-
T Consensus 25 l~aA~~lf~~~-G~~~-~t~~~IA~~ag----vs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 25 KAVALELFLTK-GYQE-TSLSDIIKLSG----GSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHT-CTTT-CCHHHHHHHHT----TSCCSSSCSCCSHH
T ss_pred HHHHHHHHHHc-Chhh-CCHHHHHHHhC----CCHHHHHHhcCCHH
Confidence 45566778763 4643 45568999996 99999999999986
No 165
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=20.86 E-value=20 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 39 QVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 39 QL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
=+..-.++|... .| . ....+||+..+ |+...|+..|.|+-.
T Consensus 20 Il~aA~~lf~~~-G~-~-~s~~~IA~~ag----vs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEE-GL-D-AHLERIAREAG----VGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHH-CT-T-CCHHHHHHHTT----CCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhc-Cc-C-CCHHHHHHHhC----CChHHHHHHcCCHHH
Confidence 345566778763 57 5 67889999996 999999999999754
No 166
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.56 E-value=8.3 Score=28.44 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchhhHHH
Q 036802 34 NPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 90 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRAReKR 90 (180)
.+++.|..+|.-.|-.+ ++. .+||..|+ |++..|+++.+.=|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~~~~g--~s~----~EIA~~lg----is~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG--FSP----EDAAYLIE----VDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTSSSC--CCH----HHHHHTTT----SCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHcC--CCH----HHHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 46788888888776554 433 37899997 9999999887644444443
No 167
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.51 E-value=36 Score=26.58 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=32.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccCCCCCCcceeccCcchh
Q 036802 31 GRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 86 (180)
Q Consensus 31 ~Rt~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQNRRA 86 (180)
+...+|+.|.++|.-++ .+ +.. .+||..|+ |++..|++..+|=+.
T Consensus 170 ~~~~Lt~~e~~vl~~~~-~g--~s~----~eIa~~l~----is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIA-VG--KTM----EEIADVEG----VKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCCCCHHHHHHHHHHT-TT--CCH----HHHHHHHT----CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHHH
Confidence 34569999999997754 44 433 37899996 999999877654433
No 168
>4fhr_A Flagellar motor switch protein FLIM; motor protein; 1.93A {Thermotoga maritima} PDB: 3soh_A 2hp7_A
Probab=20.09 E-value=93 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Q 036802 33 WNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLS 67 (180)
Q Consensus 33 t~fT~eQL~~LE~~F~~~~~yPs~~~r~eLA~~L~ 67 (180)
+.||++|+..||-+|+.- .+.-+..|...|+
T Consensus 2 skfske~l~~Le~I~e~f----aR~~~~~L~~~lr 32 (187)
T 4fhr_A 2 TKFSKEQLRTFQMIHENF----GRALSTYLSGRLR 32 (187)
T ss_dssp CCCCHHHHHHHHHHHHHH----HHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHHH----HHHHHHHHHHHhC
Confidence 579999999999999752 5556667777776
No 169
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.09 E-value=77 Score=22.12 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcccCCCCCCcceeccCc
Q 036802 34 NPTSEQVKVLTDLFTS----GLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 83 (180)
Q Consensus 34 ~fT~eQL~~LE~~F~~----~~~yPs~~~r~eLA~~L~~~g~L~e~qVqvWFQN 83 (180)
.+|++|+..|..+|.. ++.+.+..+...+...++. ..++...|...|++
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGR-LNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Confidence 6799999999999963 3467888777776666641 03556667766653
Done!