Query 036805
Match_columns 111
No_of_seqs 125 out of 1882
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 2.3E-39 4.9E-44 221.0 10.5 110 1-111 305-414 (489)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 1.3E-37 2.8E-42 211.4 9.9 109 1-111 313-422 (499)
3 PLN02971 tryptophan N-hydroxyl 100.0 4.6E-37 1E-41 212.9 10.8 110 1-111 346-455 (543)
4 PLN02394 trans-cinnamate 4-mon 100.0 2.2E-36 4.8E-41 207.8 10.1 110 1-111 312-421 (503)
5 PTZ00404 cytochrome P450; Prov 100.0 4.5E-36 9.7E-41 205.4 10.6 110 1-111 302-412 (482)
6 PLN02500 cytochrome P450 90B1 100.0 4.3E-36 9.2E-41 206.0 10.1 110 1-111 298-411 (490)
7 PLN02183 ferulate 5-hydroxylas 100.0 1.5E-35 3.3E-40 204.3 10.4 109 1-111 323-431 (516)
8 PLN03234 cytochrome P450 83B1; 100.0 2E-35 4.3E-40 203.0 10.6 110 1-111 307-417 (499)
9 PLN00168 Cytochrome P450; Prov 100.0 4E-35 8.6E-40 202.4 10.9 111 1-111 325-435 (519)
10 PLN02966 cytochrome P450 83A1 100.0 4.9E-35 1.1E-39 201.3 10.2 111 1-111 308-420 (502)
11 PLN00110 flavonoid 3',5'-hydro 100.0 8.5E-35 1.8E-39 200.2 11.0 110 1-111 308-417 (504)
12 PLN02290 cytokinin trans-hydro 100.0 4.3E-35 9.4E-40 202.0 9.5 108 1-111 335-443 (516)
13 PF00067 p450: Cytochrome P450 100.0 2.4E-35 5.1E-40 198.3 6.7 110 1-111 281-390 (463)
14 PLN02774 brassinosteroid-6-oxi 100.0 1.6E-34 3.5E-39 197.1 10.6 110 1-111 283-394 (463)
15 PLN03112 cytochrome P450 famil 100.0 1.9E-34 4.1E-39 198.8 10.7 109 1-110 315-423 (514)
16 PLN03018 homomethionine N-hydr 100.0 2.9E-34 6.3E-39 198.6 11.3 110 1-111 333-442 (534)
17 PLN02687 flavonoid 3'-monooxyg 100.0 3.1E-34 6.8E-39 197.9 10.8 110 1-111 316-425 (517)
18 PLN02655 ent-kaurene oxidase 100.0 2.8E-34 6.1E-39 196.0 10.5 109 1-111 281-389 (466)
19 PLN02738 carotene beta-ring hy 100.0 2.7E-34 5.8E-39 201.6 10.2 107 1-110 410-516 (633)
20 PLN02426 cytochrome P450, fami 100.0 3.4E-34 7.4E-39 197.1 9.5 110 1-111 312-423 (502)
21 PLN02169 fatty acid (omega-1)- 100.0 3.8E-34 8.2E-39 196.8 9.3 104 1-111 320-424 (500)
22 PLN03195 fatty acid omega-hydr 100.0 3E-34 6.4E-39 197.9 8.5 110 1-111 311-441 (516)
23 PLN03141 3-epi-6-deoxocathaste 100.0 1.2E-33 2.6E-38 192.3 10.4 110 1-111 270-382 (452)
24 KOG0159 Cytochrome P450 CYP11/ 100.0 4.1E-34 8.9E-39 192.6 7.9 110 1-111 335-444 (519)
25 KOG0157 Cytochrome P450 CYP4/C 100.0 1.6E-33 3.5E-38 193.6 9.6 109 1-110 310-420 (497)
26 PLN02936 epsilon-ring hydroxyl 100.0 4.3E-33 9.2E-38 191.2 9.6 108 1-110 297-404 (489)
27 PLN02196 abscisic acid 8'-hydr 100.0 6.4E-33 1.4E-37 189.3 9.4 110 1-111 283-394 (463)
28 PLN02302 ent-kaurenoic acid ox 100.0 2.5E-32 5.3E-37 187.1 10.1 110 1-111 306-418 (490)
29 PLN02987 Cytochrome P450, fami 100.0 1.6E-31 3.6E-36 182.8 11.1 110 1-111 286-397 (472)
30 PLN02648 allene oxide synthase 100.0 2.4E-31 5.3E-36 182.0 10.5 110 1-111 291-405 (480)
31 KOG0684 Cytochrome P450 [Secon 100.0 4E-30 8.6E-35 170.8 8.2 110 1-111 292-405 (486)
32 COG2124 CypX Cytochrome P450 [ 99.9 1.8E-26 4E-31 155.8 7.5 92 1-110 255-346 (411)
33 PF08492 SRP72: SRP72 RNA-bind 79.1 1.7 3.7E-05 21.8 1.6 6 105-110 44-49 (59)
34 PF05952 ComX: Bacillus compet 77.3 1.2 2.7E-05 22.1 0.8 22 4-25 4-25 (57)
35 PRK14759 potassium-transportin 73.6 1.5 3.2E-05 18.6 0.4 6 104-109 24-29 (29)
36 PF09604 Potass_KdpF: F subuni 72.2 1.7 3.6E-05 17.8 0.4 6 104-109 20-25 (25)
37 PF12508 DUF3714: Protein of u 69.9 5.4 0.00012 25.2 2.5 42 43-86 53-94 (200)
38 PF07849 DUF1641: Protein of u 64.0 12 0.00025 17.2 2.4 18 3-20 13-30 (42)
39 PF11138 DUF2911: Protein of u 61.5 16 0.00034 21.9 3.2 40 66-106 51-97 (145)
40 TIGR02115 potass_kdpF K+-trans 60.2 2.3 5E-05 17.6 -0.3 7 104-110 19-25 (26)
41 PF14483 Cut8_M: Cut8 dimerisa 50.6 25 0.00054 15.8 2.6 16 6-21 19-35 (38)
42 PRK06789 flagellar motor switc 48.1 29 0.00063 18.2 2.6 40 48-87 21-62 (74)
43 PF08285 DPM3: Dolichol-phosph 48.0 20 0.00044 19.6 2.0 26 2-27 56-81 (91)
44 PF14550 Peptidase_U35_2: Puta 46.3 18 0.00038 21.0 1.7 21 66-86 72-92 (122)
45 PF10264 Stork_head: Winged he 43.3 53 0.0012 17.6 3.5 36 2-38 16-53 (80)
46 PF11227 DUF3025: Protein of u 41.8 17 0.00037 23.2 1.3 19 90-108 193-211 (212)
47 TIGR03779 Bac_Flav_CT_M Bacter 41.1 28 0.0006 24.7 2.3 18 69-86 280-297 (410)
48 PF10454 DUF2458: Protein of u 39.4 37 0.0008 20.4 2.4 19 2-20 12-30 (150)
49 KOG4189 Uncharacterized conser 36.3 39 0.00084 21.4 2.2 25 2-26 154-178 (209)
50 PF01629 DUF22: Domain of unkn 36.1 43 0.00094 19.1 2.2 24 73-96 59-82 (112)
51 PF14824 Sirohm_synth_M: Siroh 34.5 46 0.00099 14.2 2.3 15 12-26 15-29 (30)
52 PHA01346 hypothetical protein 33.7 51 0.0011 15.3 1.9 18 11-28 28-46 (53)
53 TIGR03244 arg_catab_AstA argin 33.1 90 0.002 21.6 3.7 56 5-60 142-212 (336)
54 PF11998 DUF3493: Protein of u 32.1 42 0.00092 17.7 1.7 15 12-26 2-16 (75)
55 PF15300 INT_SG_DDX_CT_C: INTS 31.8 22 0.00047 18.2 0.5 15 42-56 40-54 (65)
56 PRK09919 anti-adapter protein 31.7 13 0.00029 21.2 -0.3 36 74-109 35-74 (114)
57 PRK03636 hypothetical protein; 29.1 45 0.00097 20.7 1.7 19 3-21 27-45 (179)
58 cd00250 CAS_like Clavaminic ac 27.5 85 0.0018 20.3 2.9 34 75-110 221-254 (262)
59 PF11720 Inhibitor_I78: Peptid 27.5 43 0.00092 16.6 1.2 8 78-85 29-36 (60)
60 PRK03057 hypothetical protein; 26.9 46 0.001 20.7 1.5 18 3-20 25-42 (180)
61 COG0302 FolE GTP cyclohydrolas 26.2 1.6E+02 0.0034 18.7 3.6 26 4-29 114-139 (195)
62 cd00642 GTP_cyclohydro1 GTP cy 26.0 1.5E+02 0.0033 18.6 3.6 26 4-29 105-130 (185)
63 PRK13467 F0F1 ATP synthase sub 24.5 1.1E+02 0.0025 15.6 2.7 19 4-22 25-43 (66)
64 PF14510 ABC_trans_N: ABC-tran 24.3 18 0.00038 19.2 -0.6 18 93-110 23-40 (85)
65 PLN03044 GTP cyclohydrolase I; 24.0 1.8E+02 0.0039 18.3 3.6 26 4-29 106-131 (188)
66 PF08776 VASP_tetra: VASP tetr 23.3 94 0.002 14.2 2.2 14 13-26 10-23 (40)
67 TIGR00063 folE GTP cyclohydrol 22.7 1.9E+02 0.0042 18.0 3.6 25 5-29 101-125 (180)
68 COG0851 MinE Septum formation 22.3 85 0.0018 17.1 1.8 18 12-29 35-52 (88)
69 TIGR01260 ATP_synt_c ATP synth 22.2 1.2E+02 0.0026 15.0 2.4 18 4-21 15-32 (58)
70 PF09086 DUF1924: Domain of un 22.1 54 0.0012 18.3 1.0 9 103-111 58-66 (98)
71 PF08105 Antimicrobial10: Metc 22.0 81 0.0018 15.1 1.4 17 90-106 26-43 (52)
72 PRK05933 type III secretion sy 21.9 93 0.002 21.6 2.2 44 44-87 316-362 (372)
73 PRK13990 cell division topolog 21.8 1.1E+02 0.0023 16.8 2.1 18 12-29 41-58 (90)
74 PF07888 CALCOCO1: Calcium bin 21.5 53 0.0012 24.2 1.1 39 70-108 74-114 (546)
75 PF02311 AraC_binding: AraC-li 21.4 79 0.0017 17.3 1.7 18 76-93 43-60 (136)
76 COG2071 Predicted glutamine am 21.0 56 0.0012 21.4 1.1 33 72-108 60-92 (243)
77 PF10460 Peptidase_M30: Peptid 20.9 1E+02 0.0023 21.6 2.4 25 63-87 340-364 (366)
78 PRK12606 GTP cyclohydrolase I; 20.8 2.2E+02 0.0048 18.2 3.6 26 4-29 120-145 (201)
79 PHA02450 hypothetical protein 20.6 59 0.0013 15.3 0.8 7 100-106 30-36 (53)
80 PRK10456 arginine succinyltran 20.6 68 0.0015 22.2 1.4 56 5-60 144-214 (344)
81 PF11059 DUF2860: Protein of u 20.3 1.3E+02 0.0028 20.5 2.6 33 76-108 81-113 (297)
82 TIGR03245 arg_AOST_alph argini 20.3 58 0.0013 22.5 1.1 55 5-59 143-212 (336)
83 COG1759 5-formaminoimidazole-4 20.1 1.1E+02 0.0023 21.2 2.3 56 45-102 275-337 (361)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-39 Score=220.97 Aligned_cols=110 Identities=47% Similarity=0.769 Sum_probs=106.2
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|+.|++.+|++||++|+|+++|+++++|. ++.++..+..++||++|+|+|++|++|++|+.++|.+.+|+.++||.|||
T Consensus 305 Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~-~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPk 383 (489)
T KOG0156|consen 305 TLEWAMAELLNNPEVQKKLQEEIDEVVGK-GRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPK 383 (489)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCC
Confidence 57899999999999999999999999998 55599999999999999999999999999998999999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||.|+++.|++||||++|+||++|+||||++
T Consensus 384 gT~v~vn~~ai~rDp~vw~dP~eF~PERFl~ 414 (489)
T KOG0156|consen 384 GTTVLVNLWAIHRDPKVWEDPEEFKPERFLD 414 (489)
T ss_pred CCEEEEeehhhhcCCccCCCccccChhhhcC
Confidence 9999999999999999999999999999985
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-37 Score=211.40 Aligned_cols=109 Identities=29% Similarity=0.514 Sum_probs=103.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeec-CEEeC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIE-WYEIQ 79 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~-~~~ip 79 (111)
|+++++|+||+||++|+||++|+++++.+..+ ++++.+.+|+||++||+|+||+||+++. ..|.+.+|+++. ++.|+
T Consensus 313 tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~-ltyd~l~~L~YLd~Vi~ETLR~yP~~~~-~~R~C~k~~~i~~~~~i~ 390 (499)
T KOG0158|consen 313 TLSFALYELAKNPDVQDKLREEIDEVLEEKEG-LTYDSLSKLKYLDMVIKETLRLYPPAPF-LNRECTKDYEIPGGFVIP 390 (499)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHhcccCC-CCHHHHhCCcHHHHHHHHHHhhCCCccc-ccceecCceecCCCeEeC
Confidence 57899999999999999999999999877444 9999999999999999999999999999 789999999999 99999
Q ss_pred CCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 80 AKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 80 ~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||+.|.++.+++||||++||||++|+||||++
T Consensus 391 kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~ 422 (499)
T KOG0158|consen 391 KGTPVMIPTYALHHDPEYWPEPEKFKPERFEE 422 (499)
T ss_pred CCCEEEeecccccCCcccCCCcccCCCccCCC
Confidence 99999999999999999999999999999973
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=4.6e-37 Score=212.89 Aligned_cols=110 Identities=28% Similarity=0.644 Sum_probs=105.0
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|++|++++|++||++|+|+++|++++++. ++.++++++.++||++||++|++|++|+++..++|.+.+|+.++||.|||
T Consensus 346 tl~~~l~~La~~Pevq~kl~~EI~~v~g~-~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~Ipk 424 (543)
T PLN02971 346 AVEWAMAEMINKPEILHKAMEEIDRVVGK-ERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPK 424 (543)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECC
Confidence 57899999999999999999999999987 67789999999999999999999999999987789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.|++||||++|+||++|+||||++
T Consensus 425 Gt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~ 455 (543)
T PLN02971 425 GSQVLLSRYGLGRNPKVWSDPLSFKPERHLN 455 (543)
T ss_pred CCEEEECcHHhcCChhhCCCccccCcccCCC
Confidence 9999999999999999999999999999983
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=2.2e-36 Score=207.81 Aligned_cols=110 Identities=35% Similarity=0.655 Sum_probs=103.6
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|++|++++|++||++|+|+++|++++++. +..++++++.++||++||++|++|++|+++...+|.+.+|+.++||.||+
T Consensus 312 tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~-~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~ 390 (503)
T PLN02394 312 SIEWGIAELVNHPEIQKKLRDELDTVLGP-GNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPA 390 (503)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhCC-CCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCC
Confidence 47899999999999999999999999986 45678889999999999999999999999997789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||.|.++.+++||||++|+||++|+||||++
T Consensus 391 Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~ 421 (503)
T PLN02394 391 ESKILVNAWWLANNPELWKNPEEFRPERFLE 421 (503)
T ss_pred CCEEEEchHHHhCCcccCCCccccCccccCC
Confidence 9999999999999999999999999999973
No 5
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=4.5e-36 Score=205.43 Aligned_cols=110 Identities=28% Similarity=0.456 Sum_probs=103.7
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeee-cCEEeC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCII-EWYEIQ 79 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~-~~~~ip 79 (111)
+++|++++|++||++|+|+++|+++++++ ...++++++.++||+++|++|++|++|+++..++|.+.+|+++ +|+.||
T Consensus 302 ~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~-~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip 380 (482)
T PTZ00404 302 SLEWMVLMLCNYPEIQEKAYNEIKSTVNG-RNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIP 380 (482)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhcC-CCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEEC
Confidence 47899999999999999999999999987 4567889999999999999999999999997668999999999 999999
Q ss_pred CCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 80 AKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 80 ~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
+|+.|.++.+++||||++|+||++|+||||++
T Consensus 381 ~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~ 412 (482)
T PTZ00404 381 KDAQILINYYSLGRNEKYFENPEQFDPSRFLN 412 (482)
T ss_pred CCCEEEeeHHHhhCCccccCCccccCccccCC
Confidence 99999999999999999999999999999974
No 6
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=4.3e-36 Score=205.96 Aligned_cols=110 Identities=17% Similarity=0.297 Sum_probs=101.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcC----CCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCE
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGG----NKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWY 76 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~----~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~ 76 (111)
|++|++++|++||++|+|+++|++++++. ++..++++++.++||++||++|++|++|+++. .+|.+.+|++++||
T Consensus 298 tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~-~~R~~~~d~~~~G~ 376 (490)
T PLN02500 298 AIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRF-LHRKALKDVRYKGY 376 (490)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccC-eeeEeCCCceeCCE
Confidence 57899999999999999999999998742 23457899999999999999999999999998 57999999999999
Q ss_pred EeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 77 EIQAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 77 ~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
.||||+.|.++.+++||||++|+||++|+||||++
T Consensus 377 ~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~ 411 (490)
T PLN02500 377 DIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQ 411 (490)
T ss_pred EECCCCEEEechhhcccCcccCCCccccChhhccC
Confidence 99999999999999999999999999999999973
No 7
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=1.5e-35 Score=204.29 Aligned_cols=109 Identities=37% Similarity=0.694 Sum_probs=102.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. ...++++++.+++|++||++|++|++|+++.. .|.+.+|++++||.|||
T Consensus 323 tl~~~l~~La~~Pevq~kl~~Ei~~v~~~-~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPk 400 (516)
T PLN02183 323 AIEWAMAELMKSPEDLKRVQQELADVVGL-NRRVEESDLEKLTYLKCTLKETLRLHPPIPLL-LHETAEDAEVAGYFIPK 400 (516)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHcCC-CCCCCHHHhccChHHHHHHHHHhccCCCccce-eeeccCceeECCEEECC
Confidence 57899999999999999999999999986 45688999999999999999999999999995 58899999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++||||++|+||++|+||||++
T Consensus 401 Gt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~ 431 (516)
T PLN02183 401 RSRVMINAWAIGRDKNSWEDPDTFKPSRFLK 431 (516)
T ss_pred CCEEEEehhhhcCCccccCCccccCchhhCC
Confidence 9999999999999999999999999999983
No 8
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=2e-35 Score=202.97 Aligned_cols=110 Identities=48% Similarity=0.834 Sum_probs=103.7
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|++|++++|++||++|+|+++|+++++++ .+.++++++.++||++||++|++|++|+++...+|.+.+|++++|+.||+
T Consensus 307 tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~-~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~ 385 (499)
T PLN03234 307 VVVWAMTYLIKYPEAMKKAQDEVRNVIGD-KGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPA 385 (499)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECC
Confidence 47899999999999999999999999877 56789999999999999999999999999986679999999999999999
Q ss_pred CCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
||.|.++.+++||||++| +||++|+||||++
T Consensus 386 Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~ 417 (499)
T PLN03234 386 KTIIQVNAWAVSRDTAAWGDNPNEFIPERFMK 417 (499)
T ss_pred CCEEEEehHhhhCCcccccCChhhcCchhhcC
Confidence 999999999999999999 7999999999974
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=4e-35 Score=202.38 Aligned_cols=111 Identities=31% Similarity=0.519 Sum_probs=104.5
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++.+...++++++.++||+++|++|++|++|+++..++|.+.+|++++||.|||
T Consensus 325 ~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ipk 404 (519)
T PLN00168 325 ALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPK 404 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECC
Confidence 47899999999999999999999999976446688999999999999999999999999887789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++||||++|+||++|+||||++
T Consensus 405 Gt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~ 435 (519)
T PLN00168 405 GATVNFMVAEMGRDEREWERPMEFVPERFLA 435 (519)
T ss_pred CCEEEEChHHHhcCccccCCccccCcccCCC
Confidence 9999999999999999999999999999973
No 10
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=4.9e-35 Score=201.26 Aligned_cols=111 Identities=43% Similarity=0.766 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC-CCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN-KGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQ 79 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~-~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip 79 (111)
+++|++++|++||++|+|+++|++++++.. +..++++++.++||++||++|++|++|+++...+|.+.+|+.++|+.||
T Consensus 308 ~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP 387 (502)
T PLN02966 308 AVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIP 387 (502)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEEC
Confidence 478999999999999999999999998752 3357889999999999999999999999998668999999999999999
Q ss_pred CCCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 80 AKTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 80 ~g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
+||.|.++.+++||||++| +||++|+||||++
T Consensus 388 ~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~ 420 (502)
T PLN02966 388 AGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLE 420 (502)
T ss_pred CCCEEEEecccccCCcccccCChhhCChhhhcC
Confidence 9999999999999999999 9999999999974
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=8.5e-35 Score=200.20 Aligned_cols=110 Identities=35% Similarity=0.682 Sum_probs=104.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. ...++++++.++||+++|++|++|++|+++..++|.+.+|+.++||.||+
T Consensus 308 ~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~-~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~ 386 (504)
T PLN00110 308 VIEWSLAEMLKNPSILKRAHEEMDQVIGR-NRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPK 386 (504)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECC
Confidence 47899999999999999999999999886 56688999999999999999999999999987789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++|+||++|+||++|+||||++
T Consensus 387 Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~ 417 (504)
T PLN00110 387 NTRLSVNIWAIGRDPDVWENPEEFRPERFLS 417 (504)
T ss_pred CCEEEEeHHHhcCChhhcCCcccCCcccccC
Confidence 9999999999999999999999999999973
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=4.3e-35 Score=201.98 Aligned_cols=108 Identities=25% Similarity=0.468 Sum_probs=102.3
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. + .++++++.++||++||++|++|++|+++. .+|.+.+|+.++|+.||+
T Consensus 335 tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~-~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~ 411 (516)
T PLN02290 335 LLTWTLMLLASNPTWQDKVRAEVAEVCGG-E-TPSVDHLSKLTLLNMVINESLRLYPPATL-LPRMAFEDIKLGDLHIPK 411 (516)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhCC-C-CCCHHHHhcChHHHHHHHHHHHcCCCccc-cceeecCCeeECCEEECC
Confidence 47899999999999999999999999987 3 67899999999999999999999999987 689999999999999999
Q ss_pred CCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++||||++| +||++|+||||++
T Consensus 412 Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~ 443 (516)
T PLN02290 412 GLSIWIPVLAIHHSEELWGKDANEFNPDRFAG 443 (516)
T ss_pred CCEEEecHHHhcCChhhhCCChhhcCccccCC
Confidence 999999999999999999 7999999999973
No 13
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=2.4e-35 Score=198.28 Aligned_cols=110 Identities=35% Similarity=0.539 Sum_probs=102.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+++++|+++++++ +..++.+++.++||++||++|++|++|+++..++|.+.+|+++.|+.|||
T Consensus 281 ~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~-~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~ 359 (463)
T PF00067_consen 281 TLSWTLYELAKNPEVQEKLREEIDSVLGD-GREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPK 359 (463)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHTTT-SSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEET
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999966 56788999999999999999999999999965789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++|+||++|+||++|+|+||++
T Consensus 360 gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~ 390 (463)
T PF00067_consen 360 GTIVIVSIYALHRDPEYFPDPDEFDPERFLD 390 (463)
T ss_dssp TSEEEEEHHHHTTSTTTSSSTTS--TTGGBT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999984
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=1.6e-34 Score=197.11 Aligned_cols=110 Identities=22% Similarity=0.309 Sum_probs=102.0
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC--CCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEe
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEI 78 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~i 78 (111)
+++|++++|++||++|+|+++|++++++.. +..++++++.++||+++|++|++|++|+++. ..|.+.+|++++||.|
T Consensus 283 ~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~-~~R~~~~d~~l~g~~I 361 (463)
T PLN02774 283 TSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNG-VLRKTTQDMELNGYVI 361 (463)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCC-cccccCCCeeECCEEE
Confidence 478999999999999999999999998642 3467889999999999999999999999986 5699999999999999
Q ss_pred CCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 79 QAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 79 p~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|||+.|+++.+++||||++|+||++|+||||++
T Consensus 362 pkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~ 394 (463)
T PLN02774 362 PKGWRIYVYTREINYDPFLYPDPMTFNPWRWLD 394 (463)
T ss_pred CCCCEEEEehHHhcCCcccCCChhccCchhcCC
Confidence 999999999999999999999999999999973
No 15
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=198.76 Aligned_cols=109 Identities=37% Similarity=0.688 Sum_probs=103.4
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. ++.++++++.++||++||++|++|++|+++..++|.+.+|+.++|+.|||
T Consensus 315 ~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~-~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPk 393 (514)
T PLN03112 315 TNEWAMAEVIKNPRVLRKIQEELDSVVGR-NRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPA 393 (514)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhcCC-CCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCC
Confidence 47899999999999999999999999887 56689999999999999999999999999986789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl 110 (111)
|+.|.++.+++||||++|+||++|+|+||+
T Consensus 394 Gt~v~~~~~~~h~d~~~~~dP~~F~PeRf~ 423 (514)
T PLN03112 394 KTRVFINTHGLGRNTKIWDDVEEFRPERHW 423 (514)
T ss_pred CCEEEEehHHhhCCcccCCChhhcCCcccC
Confidence 999999999999999999999999999985
No 16
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=2.9e-34 Score=198.60 Aligned_cols=110 Identities=29% Similarity=0.613 Sum_probs=103.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. +..++.+++.++||+++|++|++|++|+++...+|.+.+|+.++||.|||
T Consensus 333 ~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~-~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~Ipk 411 (534)
T PLN03018 333 NMEWTLGEMLKNPEILRKALKELDEVVGK-DRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPK 411 (534)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhCC-CCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECC
Confidence 47899999999999999999999999976 56788899999999999999999999999986679999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++|+||++|+||++|+||||++
T Consensus 412 Gt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~ 442 (534)
T PLN03018 412 GSHIHVCRPGLGRNPKIWKDPLVYEPERHLQ 442 (534)
T ss_pred CCEEEEChHHhcCCcccCCCccccCCccCCC
Confidence 9999999999999999999999999999973
No 17
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=3.1e-34 Score=197.87 Aligned_cols=110 Identities=39% Similarity=0.726 Sum_probs=104.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|++++++. ...++.+++.++||+++|++|++|++|+++..++|.+.+|+.++|+.||+
T Consensus 316 ~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~-~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~ 394 (517)
T PLN02687 316 TVEWAIAELIRHPDILKKAQEELDAVVGR-DRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPK 394 (517)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHcCC-CCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECC
Confidence 47899999999999999999999999876 56788999999999999999999999999986789999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++||||++|+||++|+||||++
T Consensus 395 Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~ 425 (517)
T PLN02687 395 GATLLVNVWAIARDPEQWPDPLEFRPDRFLP 425 (517)
T ss_pred CCEEEEecHHhcCCcccCCCcccCCchhcCC
Confidence 9999999999999999999999999999973
No 18
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=2.8e-34 Score=196.03 Aligned_cols=109 Identities=35% Similarity=0.543 Sum_probs=103.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|+++++++ .. ++++++.++||+++|++|++|++|+++...+|.+.+|+.++|+.|||
T Consensus 281 ~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~-~~-~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~ 358 (466)
T PLN02655 281 TTEWAMYELAKNPDKQERLYREIREVCGD-ER-VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPA 358 (466)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhCC-CC-CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECC
Confidence 47899999999999999999999999887 33 89999999999999999999999999986689999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+.|.++.+++||||++|+||++|+|+||++
T Consensus 359 gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~ 389 (466)
T PLN02655 359 GTQIAINIYGCNMDKKRWENPEEWDPERFLG 389 (466)
T ss_pred CCEEEecHHHhcCCcccCCChhccCccccCC
Confidence 9999999999999999999999999999974
No 19
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=2.7e-34 Score=201.61 Aligned_cols=107 Identities=27% Similarity=0.598 Sum_probs=101.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+|+++|+++++++ ..++++++.++||++|||+|+||++|+++. ..|.+.+|..++||.||+
T Consensus 410 tLt~~l~~L~~~Pevq~kLreEl~~v~~~--~~~t~edL~kLPYL~AVIkEtLRL~p~~p~-~~R~a~~d~~i~gy~IPk 486 (633)
T PLN02738 410 VLTWTFYLLSKEPSVVAKLQEEVDSVLGD--RFPTIEDMKKLKYTTRVINESLRLYPQPPV-LIRRSLENDMLGGYPIKR 486 (633)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCC--CCCCHHHHccCHHHHHHHHHHHhcCCCccc-cceeeccCceECCEEECC
Confidence 57899999999999999999999999875 567899999999999999999999999998 458889999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl 110 (111)
||.|.++.+.+||||++|+||++|+||||+
T Consensus 487 GT~V~~s~~~ihrdp~ifpdP~~F~PERWl 516 (633)
T PLN02738 487 GEDIFISVWNLHRSPKHWDDAEKFNPERWP 516 (633)
T ss_pred CCEEEecHHHHhCCccccCCccccCcccCC
Confidence 999999999999999999999999999997
No 20
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=3.4e-34 Score=197.14 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=101.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeee-cCEEeC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCII-EWYEIQ 79 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~-~~~~ip 79 (111)
+++|++++|++||++|+|+++|++++.+.+...++++++.++||++||++|++|++|+++.. .|.+.+|..+ +|+.||
T Consensus 312 ~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~-~r~~~~d~~~~~G~~Ip 390 (502)
T PLN02426 312 ALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQFD-SKFAAEDDVLPDGTFVA 390 (502)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCc-ceeeccCCCcCCCcEEC
Confidence 47899999999999999999999999876444689999999999999999999999999985 5888877776 899999
Q ss_pred CCCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 80 AKTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 80 ~g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
+||.|.++.+++||||++| +||++|+||||++
T Consensus 391 ~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~ 423 (502)
T PLN02426 391 KGTRVTYHPYAMGRMERIWGPDCLEFKPERWLK 423 (502)
T ss_pred CCCEEEEchHHhcCCccccCcChhhcCccccCC
Confidence 9999999999999999999 8999999999984
No 21
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=3.8e-34 Score=196.84 Aligned_cols=104 Identities=21% Similarity=0.436 Sum_probs=92.6
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|++|++++|++||++|+|+++|+++++ +++++.++||+++|++|++|++|+++...++.+.+++.++|+.||+
T Consensus 320 tl~w~l~~La~~Pevq~kl~~Ei~~v~-------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~Ipk 392 (500)
T PLN02169 320 ALTWFFWLLSKHPQVMAKIRHEINTKF-------DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDA 392 (500)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHhhC-------CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECC
Confidence 578999999999999999999998764 4578899999999999999999999995533444445568999999
Q ss_pred CCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
|+.|.++.|++||||++| +||++|+||||++
T Consensus 393 Gt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~ 424 (500)
T PLN02169 393 ESKIVICIYALGRMRSVWGEDALDFKPERWIS 424 (500)
T ss_pred CCEEEEcHHHhhCCccccCCChhhcCccccCC
Confidence 999999999999999999 7999999999973
No 22
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=3e-34 Score=197.88 Aligned_cols=110 Identities=25% Similarity=0.449 Sum_probs=97.0
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC-------------------CCCCCcccccCChhHHHHHHHhcCCCCCCCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN-------------------KGFVNENDVQELHYLKAVVKETIRLQPTESL 61 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~ 61 (111)
|++|++++|++||++|+|+++|+++++++. +..++++++.++||++|||+|+||++|+++.
T Consensus 311 tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~ 390 (516)
T PLN03195 311 TLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQ 390 (516)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcc
Confidence 578999999999999999999999886431 2357888999999999999999999999999
Q ss_pred CCCccccCCee-ecCEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCC
Q 036805 62 LPPRETIENCI-IEWYEIQAKTHVFVIRWAIGRDPETW-QNPEEVYPGGICL 111 (111)
Q Consensus 62 ~~~r~~~~~~~-~~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~p~Rfl~ 111 (111)
.. |.+.+|.. ++|+.||||+.|.++.+++||||++| +||++|+||||++
T Consensus 391 ~~-r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~ 441 (516)
T PLN03195 391 DP-KGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIK 441 (516)
T ss_pred hh-hhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCC
Confidence 54 54555544 48999999999999999999999999 9999999999983
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=1.2e-33 Score=192.32 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=100.7
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhc---CCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEE
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIG---GNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYE 77 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~---~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ 77 (111)
+++|++++|++||++|+++++|++++.+ ..+..++.+++.++||++||++|++|++|+++. ++|.+.+|++++||.
T Consensus 270 tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~-~~R~~~~d~~l~g~~ 348 (452)
T PLN03141 270 LMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIING-VMRKAMKDVEIKGYL 348 (452)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCC-cceeecCCeeECCEE
Confidence 4789999999999999999999988763 223457888899999999999999999999876 679999999999999
Q ss_pred eCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 78 IQAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 78 ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||+|+.|.++.+++|+|+++|+||++|+||||++
T Consensus 349 IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~ 382 (452)
T PLN03141 349 IPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQE 382 (452)
T ss_pred ECCCCEEEEehHhccCCchhcCCccccCcccccC
Confidence 9999999999999999999999999999999984
No 24
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-34 Score=192.61 Aligned_cols=110 Identities=25% Similarity=0.493 Sum_probs=105.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
|+.|++|+|++||++|++|++|+.++++.++..++.+.+.++|||.|||||++|++|.+++ ..|...+|..+.||.|||
T Consensus 335 tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~-~~R~l~~D~vL~gY~vPa 413 (519)
T KOG0159|consen 335 TLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPG-NGRVLPKDLVLSGYHVPA 413 (519)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccc-cccccchhceeccceecC
Confidence 4789999999999999999999999998867788999999999999999999999999999 569999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||.|.+..+.+.+||++|++|++|+|+|||+
T Consensus 414 gT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~ 444 (519)
T KOG0159|consen 414 GTLVVLFLYVLGRNPAYFPDPEEFLPERWLK 444 (519)
T ss_pred CCeEEEeehhhccChhhCCCccccChhhhcc
Confidence 9999999999999999999999999999985
No 25
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=193.57 Aligned_cols=109 Identities=27% Similarity=0.570 Sum_probs=97.1
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeec-CEEeC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIE-WYEIQ 79 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~-~~~ip 79 (111)
+++|++++|+.||++|+|+++|+.+++++.+........++|+|+++||+|+||++|++|. ..|.+.+|+.+. ||.||
T Consensus 310 ~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~-~~R~~~~d~~l~~g~~IP 388 (497)
T KOG0157|consen 310 ALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPL-VARKATKDVKLPGGYTIP 388 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCch-hhcccCCCeEcCCCcEeC
Confidence 4789999999999999999999999998633332222333699999999999999999999 679999999995 89999
Q ss_pred CCCEEEeehhhhccCCCCCC-CCCCcCCCCCC
Q 036805 80 AKTHVFVIRWAIGRDPETWQ-NPEEVYPGGIC 110 (111)
Q Consensus 80 ~g~~v~~~~~~~~~d~~~~~-~p~~F~p~Rfl 110 (111)
||+.|.++.+++|||+++|+ ||++|||+||+
T Consensus 389 kG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~ 420 (497)
T KOG0157|consen 389 KGTNVLISIYALHRDPRVWGEDPEEFDPERFL 420 (497)
T ss_pred CCCEEEEehHHhccCccccCCChhhcCccccC
Confidence 99999999999999999997 99999999998
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=4.3e-33 Score=191.23 Aligned_cols=108 Identities=29% Similarity=0.581 Sum_probs=100.6
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+++|++++|++||++|+++++|+++++++ ..++++++.+|||++||++|++|++|+++...+|.+.+|+.++|+.||+
T Consensus 297 ~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~--~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~ 374 (489)
T PLN02936 297 VLTWTLYLLSKNPEALRKAQEELDRVLQG--RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNA 374 (489)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcC--CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECC
Confidence 47899999999999999999999999875 3478889999999999999999999999887777777888889999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl 110 (111)
|+.|.++.+++||||++|+||++|+|+||+
T Consensus 375 Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl 404 (489)
T PLN02936 375 GQDIMISVYNIHRSPEVWERAEEFVPERFD 404 (489)
T ss_pred CCEEEecHHhccCChhhCCCccccCccccC
Confidence 999999999999999999999999999997
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=6.4e-33 Score=189.29 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=101.5
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC--CCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEe
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEI 78 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~i 78 (111)
+++|++++|++||++|+|+++|++++.+.. ...++++++.+++|++|+++|++|++|+++.. .|.+.+|+.++||.|
T Consensus 283 ~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~I 361 (463)
T PLN02196 283 VLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFT-FREAVEDVEYEGYLI 361 (463)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCcccc-ceeeccccccCCEEe
Confidence 478999999999999999999999988642 35678899999999999999999999999884 588999999999999
Q ss_pred CCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 79 QAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 79 p~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|||+.|.++.+++|+||++|+||++|+||||++
T Consensus 362 pkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~ 394 (463)
T PLN02196 362 PKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEV 394 (463)
T ss_pred CCCCEEEeeHHHhcCCchhcCCcCccChhhhcC
Confidence 999999999999999999999999999999973
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.98 E-value=2.5e-32 Score=187.14 Aligned_cols=110 Identities=24% Similarity=0.367 Sum_probs=100.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC---CCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEE
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN---KGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYE 77 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~---~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ 77 (111)
+++|++++|++||++|+|+++|++++.+.. ...++++++.++||++++++|++|++|+++. ..|.+.+|+.++|+.
T Consensus 306 ~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~-~~R~~~~d~~~~g~~ 384 (490)
T PLN02302 306 LTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLT-VFREAKTDVEVNGYT 384 (490)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCccc-chhcccCCEeECCEE
Confidence 478999999999999999999999998642 1236888999999999999999999999988 468899999999999
Q ss_pred eCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 78 IQAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 78 ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
||+|+.|.++.+++||||++|+||++|+|+||++
T Consensus 385 Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~ 418 (490)
T PLN02302 385 IPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDN 418 (490)
T ss_pred ECCCCEEEeeHHHhcCCcccCCCccccChhhcCC
Confidence 9999999999999999999999999999999974
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.97 E-value=1.6e-31 Score=182.79 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=100.8
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCC--CCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEe
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEI 78 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~i 78 (111)
+++|+++.|++||++|+++++|++++.+.. ...++++++.++||++++++|++|++|+++. ..|.+.+|+.++||.|
T Consensus 286 ~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~-~~R~~~~d~~~~G~~i 364 (472)
T PLN02987 286 IMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGG-IFRRAMTDIEVKGYTI 364 (472)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCC-ccccCCCCeeECCEEE
Confidence 478999999999999999999999987531 3457888999999999999999999999886 5799999999999999
Q ss_pred CCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 79 QAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 79 p~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|+|+.|.++.+++|+||++|+||++|+|+||++
T Consensus 365 p~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~ 397 (472)
T PLN02987 365 PKGWKVFASFRAVHLDHEYFKDARTFNPWRWQS 397 (472)
T ss_pred CCCCEEEEehHHhhCCcccCCCccccCcccCCC
Confidence 999999999999999999999999999999974
No 30
>PLN02648 allene oxide synthase
Probab=99.97 E-value=2.4e-31 Score=181.99 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=100.1
Q ss_pred CHHHHHHHHHhChH-HHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeec----C
Q 036805 1 TMVWSMTYLMNNPR-AMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIE----W 75 (111)
Q Consensus 1 tl~~~~~~l~~~p~-~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~----~ 75 (111)
+++|++++|++||+ +|+++++|++++++..+..++++++.+|+|++++++|++|++|+++.. .|.+.+|+++. |
T Consensus 291 ~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~-~r~a~~d~~l~~~~~g 369 (480)
T PLN02648 291 FFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQ-YGRAREDFVIESHDAA 369 (480)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccc-cceecCCEEEecCCce
Confidence 36789999999995 999999999999864345689999999999999999999999999984 47788999996 7
Q ss_pred EEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 76 YEIQAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 76 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
|.||||+.|.++.+.+||||++|+||++|+|+||++
T Consensus 370 ~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~ 405 (480)
T PLN02648 370 FEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMG 405 (480)
T ss_pred EEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCC
Confidence 999999999999999999999999999999999973
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4e-30 Score=170.83 Aligned_cols=110 Identities=28% Similarity=0.506 Sum_probs=103.5
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecC----E
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEW----Y 76 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~----~ 76 (111)
|..|++++|++||++++.+++|++.++|++..+++.+.++++|.+++||+|++|++||.+. +-|.+.+|.++.+ |
T Consensus 292 tsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~-~~R~v~~D~tv~~~~~~Y 370 (486)
T KOG0684|consen 292 TSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHS-LMRKVHEDLTVPGSDGEY 370 (486)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhh-HHHhhccceeeccCCcce
Confidence 5689999999999999999999999999866779999999999999999999999998887 4499999999977 9
Q ss_pred EeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCC
Q 036805 77 EIQAKTHVFVIRWAIGRDPETWQNPEEVYPGGICL 111 (111)
Q Consensus 77 ~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl~ 111 (111)
.||+|..|.++..-+|+||++|++|+.|+|+||++
T Consensus 371 ~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~ 405 (486)
T KOG0684|consen 371 VIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLK 405 (486)
T ss_pred ecCCCCEEEeccccccCCccccCChhhCChhhccC
Confidence 99999999999999999999999999999999984
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.8e-26 Score=155.76 Aligned_cols=92 Identities=33% Similarity=0.518 Sum_probs=87.0
Q ss_pred CHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCcccccCChhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCC
Q 036805 1 TMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNENDVQELHYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQA 80 (111)
Q Consensus 1 tl~~~~~~l~~~p~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~ 80 (111)
+|+|+++.|++||++++++++|.+. +++.++++|++|++|+++. .+|.+.+|++++|+.||+
T Consensus 255 ~l~~a~~~L~~~P~~~~~l~~e~~~-----------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~ 316 (411)
T COG2124 255 ALAWALYALLRHPDQLAKLRAEPDR-----------------PLLEAVVEETLRLYPPVPL-ARRVATEDVELGGYRIPA 316 (411)
T ss_pred HHHHHHHHHHHCchHHHHHHhCcch-----------------HHHHHHHHHHHHhCCchhc-cceeccCCEeeCCEEeCC
Confidence 4789999999999999999986543 7999999999999999999 889999999999999999
Q ss_pred CCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 036805 81 KTHVFVIRWAIGRDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 81 g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl 110 (111)
|+.|.+++++.||||+.|++|++|+|+||.
T Consensus 317 G~~V~~~~~~anrDp~~f~~P~~F~p~R~~ 346 (411)
T COG2124 317 GTVVLLSIGAANRDPEVFPDPDEFDPERFN 346 (411)
T ss_pred CCEEEecHhhhcCChhhCCChhhcCCCCCC
Confidence 999999999999999999999999999995
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=79.11 E-value=1.7 Score=21.75 Aligned_cols=6 Identities=17% Similarity=-0.014 Sum_probs=4.6
Q ss_pred CCCCCC
Q 036805 105 YPGGIC 110 (111)
Q Consensus 105 ~p~Rfl 110 (111)
||||||
T Consensus 44 DPERWL 49 (59)
T PF08492_consen 44 DPERWL 49 (59)
T ss_pred CccccC
Confidence 777776
No 34
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=77.27 E-value=1.2 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.435 Sum_probs=17.4
Q ss_pred HHHHHHHhChHHHHHHHHHHHH
Q 036805 4 WSMTYLMNNPRAMKKVQMEIRS 25 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e~~~ 25 (111)
-++.+|.+||++.+++.+.-..
T Consensus 4 ~iV~YLv~nPevl~kl~~g~as 25 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEAS 25 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCee
Confidence 4678899999999999974333
No 35
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=73.59 E-value=1.5 Score=18.60 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=3.2
Q ss_pred cCCCCC
Q 036805 104 VYPGGI 109 (111)
Q Consensus 104 F~p~Rf 109 (111)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 455555
No 36
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=72.25 E-value=1.7 Score=17.80 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=3.1
Q ss_pred cCCCCC
Q 036805 104 VYPGGI 109 (111)
Q Consensus 104 F~p~Rf 109 (111)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 355555
No 37
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=69.89 E-value=5.4 Score=25.17 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCccccCCeeecCEEeCCCCEEEe
Q 036805 43 HYLKAVVKETIRLQPTESLLPPRETIENCIIEWYEIQAKTHVFV 86 (111)
Q Consensus 43 ~~l~~~i~E~lR~~~~~~~~~~r~~~~~~~~~~~~ip~g~~v~~ 86 (111)
....|||.|+.....-... .=...+|+.++|..||||+.++-
T Consensus 53 n~I~A~V~~~qtv~~Gs~v--rlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 53 NTIRAVVDGTQTVVDGSRV--RLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CeEEEEEecceEEeCCCEE--EEEEcCceEECCEEeCCCCEEEE
Confidence 4566778887766433222 22456788999999999997764
No 38
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=64.01 E-value=12 Score=17.25 Aligned_cols=18 Identities=6% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHhChHHHHHHH
Q 036805 3 VWSMTYLMNNPRAMKKVQ 20 (111)
Q Consensus 3 ~~~~~~l~~~p~~~~~l~ 20 (111)
.|.++.++++|++|.-+.
T Consensus 13 l~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 13 LFGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 477888999999998776
No 39
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=61.45 E-value=16 Score=21.91 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=25.5
Q ss_pred cccCCeeecCEEeCCCCEEEeehh-------hhccCCCCCCCCCCcCC
Q 036805 66 ETIENCIIEWYEIQAKTHVFVIRW-------AIGRDPETWQNPEEVYP 106 (111)
Q Consensus 66 ~~~~~~~~~~~~ip~g~~v~~~~~-------~~~~d~~~~~~p~~F~p 106 (111)
...+|+.++|-.||+|+.-++... .++++...|+. ..++|
T Consensus 51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~ 97 (145)
T PF11138_consen 51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDP 97 (145)
T ss_pred EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCc
Confidence 345789999999999976554432 24556667765 33443
No 40
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=60.16 E-value=2.3 Score=17.55 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.9
Q ss_pred cCCCCCC
Q 036805 104 VYPGGIC 110 (111)
Q Consensus 104 F~p~Rfl 110 (111)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4566653
No 41
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=50.57 E-value=25 Score=15.83 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=10.7
Q ss_pred HHHHH-hChHHHHHHHH
Q 036805 6 MTYLM-NNPRAMKKVQM 21 (111)
Q Consensus 6 ~~~l~-~~p~~~~~l~~ 21 (111)
+..++ +||+++..++.
T Consensus 19 L~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 19 LQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHSTHHHHHHHT
T ss_pred HHHHHHhChhHHHHHHh
Confidence 33344 88988887764
No 42
>PRK06789 flagellar motor switch protein; Validated
Probab=48.10 E-value=29 Score=18.23 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCCCCCCccccCC--eeecCEEeCCCCEEEee
Q 036805 48 VVKETIRLQPTESLLPPRETIEN--CIIEWYEIQAKTHVFVI 87 (111)
Q Consensus 48 ~i~E~lR~~~~~~~~~~r~~~~~--~~~~~~~ip~g~~v~~~ 87 (111)
-++|.+.+.+-.-..+.+.+.++ +.++|..|.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 36778888777665566767665 45579999999988765
No 43
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=48.05 E-value=20 Score=19.60 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHhh
Q 036805 2 MVWSMTYLMNNPRAMKKVQMEIRSLI 27 (111)
Q Consensus 2 l~~~~~~l~~~p~~~~~l~~e~~~~~ 27 (111)
+.|.++..-..|+-.+.+.+||+++-
T Consensus 56 lgy~v~tFnDcpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 56 LGYGVATFNDCPEAAKELQKEIKEAK 81 (91)
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 45666666777888888988888763
No 44
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=46.28 E-value=18 Score=21.01 Aligned_cols=21 Identities=24% Similarity=-0.027 Sum_probs=16.8
Q ss_pred cccCCeeecCEEeCCCCEEEe
Q 036805 66 ETIENCIIEWYEIQAKTHVFV 86 (111)
Q Consensus 66 ~~~~~~~~~~~~ip~g~~v~~ 86 (111)
.+..|..+.|-.||+|+.|..
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred ecCCCcccCCeeecceEEEEE
Confidence 455688889999999998854
No 45
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=43.32 E-value=53 Score=17.56 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHHHhC--hHHHHHHHHHHHHhhcCCCCCCCccc
Q 036805 2 MVWSMTYLMNN--PRAMKKVQMEIRSLIGGNKGFVNEND 38 (111)
Q Consensus 2 l~~~~~~l~~~--p~~~~~l~~e~~~~~~~~~~~~~~~~ 38 (111)
+.|++..|... +-.++.|++.+.+.+++ -..++.+.
T Consensus 16 lC~~I~dln~~~~~at~E~l~~~L~~~yp~-i~~Ps~e~ 53 (80)
T PF10264_consen 16 LCWVISDLNAAGQPATQETLREHLRKHYPG-IAIPSQEV 53 (80)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhCCC-CCCCCHHH
Confidence 55677666655 55678888888888776 33344333
No 46
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=41.81 E-value=17 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=16.5
Q ss_pred hhccCCCCCCCCCCcCCCC
Q 036805 90 AIGRDPETWQNPEEVYPGG 108 (111)
Q Consensus 90 ~~~~d~~~~~~p~~F~p~R 108 (111)
.-+-|+.+|.|...|+|-|
T Consensus 193 ~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 193 PDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCcccccCccccCCCC
Confidence 3477999999999999987
No 47
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=41.09 E-value=28 Score=24.66 Aligned_cols=18 Identities=17% Similarity=-0.045 Sum_probs=14.0
Q ss_pred CCeeecCEEeCCCCEEEe
Q 036805 69 ENCIIEWYEIQAKTHVFV 86 (111)
Q Consensus 69 ~~~~~~~~~ip~g~~v~~ 86 (111)
+|+.++|..||+||.|+-
T Consensus 280 e~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 280 EPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred CceeeCCEEecCCCEEEE
Confidence 456778899999997764
No 48
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=39.36 E-value=37 Score=20.43 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=15.0
Q ss_pred HHHHHHHHHhChHHHHHHH
Q 036805 2 MVWSMTYLMNNPRAMKKVQ 20 (111)
Q Consensus 2 l~~~~~~l~~~p~~~~~l~ 20 (111)
+.+++..+++||+.+.+|+
T Consensus 12 Lryv~~~v~~n~~~~~~Ir 30 (150)
T PF10454_consen 12 LRYVMKTVAQNPEFLQRIR 30 (150)
T ss_pred HHHHHHHHhcCHHHHHHHH
Confidence 4567788899998888775
No 49
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=39 Score=21.40 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.0
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHh
Q 036805 2 MVWSMTYLMNNPRAMKKVQMEIRSL 26 (111)
Q Consensus 2 l~~~~~~l~~~p~~~~~l~~e~~~~ 26 (111)
.+-++|.|-+.+++..+|+++++..
T Consensus 154 V~~amYtLPTR~~lL~~Lk~d~~~~ 178 (209)
T KOG4189|consen 154 VAAAMYTLPTRPELLCRLKEDMDAA 178 (209)
T ss_pred HHHHHHhCCCcHHHHHHHHhHHHHH
Confidence 4567899999999999999988654
No 50
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=36.10 E-value=43 Score=19.12 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=19.1
Q ss_pred ecCEEeCCCCEEEeehhhhccCCC
Q 036805 73 IEWYEIQAKTHVFVIRWAIGRDPE 96 (111)
Q Consensus 73 ~~~~~ip~g~~v~~~~~~~~~d~~ 96 (111)
+....||++|.+.+..++-|.-..
T Consensus 59 Ik~I~iP~~tIv~p~~~~rha~G~ 82 (112)
T PF01629_consen 59 IKKIEIPPNTIVMPCAYMRHALGS 82 (112)
T ss_pred EEEEecCCCCEEEEchHhhccCcc
Confidence 345889999999999988887543
No 51
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=34.50 E-value=46 Score=14.22 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHh
Q 036805 12 NPRAMKKVQMEIRSL 26 (111)
Q Consensus 12 ~p~~~~~l~~e~~~~ 26 (111)
.|.+-.++|+|+.+.
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 477788899888764
No 52
>PHA01346 hypothetical protein
Probab=33.69 E-value=51 Score=15.29 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=13.2
Q ss_pred hChHH-HHHHHHHHHHhhc
Q 036805 11 NNPRA-MKKVQMEIRSLIG 28 (111)
Q Consensus 11 ~~p~~-~~~l~~e~~~~~~ 28 (111)
.+|+. |+|++.|++..+.
T Consensus 28 sdpdfsqekihaeldsllr 46 (53)
T PHA01346 28 SDPDFSQEKIHAELDSLLR 46 (53)
T ss_pred CCCCccHHHHHHHHHHHHH
Confidence 45654 8999999887753
No 53
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=33.15 E-value=90 Score=21.58 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHhChHH-HHHHHHHHHHhhcCCCCCCCccccc----CChh----------HHHHHHHhcCCCCCCC
Q 036805 5 SMTYLMNNPRA-MKKVQMEIRSLIGGNKGFVNENDVQ----ELHY----------LKAVVKETIRLQPTES 60 (111)
Q Consensus 5 ~~~~l~~~p~~-~~~l~~e~~~~~~~~~~~~~~~~~~----~~~~----------l~~~i~E~lR~~~~~~ 60 (111)
-+++|+.||+. .+++..|+.-+..+.+..+-|+.+. .|.| -+.+|.|.+--+|...
T Consensus 142 RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIYv 212 (336)
T TIGR03244 142 RFLFIAQFRERFSKKIIAEMRGVSDEQGRSPFWNALGRHFFSMDFSQADYLSGIGQKAFIAELMPKFPIYV 212 (336)
T ss_pred HHHHHHhhHhhhhhhhhhhhcCccCCCCCCchHHHhhccccCCCHHHHHHHhccCcchhHHHHCCCCCccc
Confidence 46789999986 5889999998887766676666643 2333 3478889988888743
No 54
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=32.06 E-value=42 Score=17.69 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHh
Q 036805 12 NPRAMKKVQMEIRSL 26 (111)
Q Consensus 12 ~p~~~~~l~~e~~~~ 26 (111)
+|+...|+++|++.-
T Consensus 2 ~~~~~~rLraE~~aP 16 (75)
T PF11998_consen 2 DPEQYARLRAEAQAP 16 (75)
T ss_pred CHHHHHHHHHHHHCc
Confidence 688899999998753
No 55
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=31.81 E-value=22 Score=18.20 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=12.2
Q ss_pred ChhHHHHHHHhcCCC
Q 036805 42 LHYLKAVVKETIRLQ 56 (111)
Q Consensus 42 ~~~l~~~i~E~lR~~ 56 (111)
..++..+|+|++|+.
T Consensus 40 ~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 40 KQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357899999999973
No 56
>PRK09919 anti-adapter protein IraM; Provisional
Probab=31.73 E-value=13 Score=21.24 Aligned_cols=36 Identities=3% Similarity=-0.093 Sum_probs=23.3
Q ss_pred cCEEeCCCCEEEeehhhhccCCCCCC----CCCCcCCCCC
Q 036805 74 EWYEIQAKTHVFVIRWAIGRDPETWQ----NPEEVYPGGI 109 (111)
Q Consensus 74 ~~~~ip~g~~v~~~~~~~~~d~~~~~----~p~~F~p~Rf 109 (111)
+++.+++|+.+.+.-..+--|.+..+ +-.-|++..|
T Consensus 35 ~d~~L~pG~~i~~~~~gvliNdk~~pItIYnvtpyn~~lW 74 (114)
T PRK09919 35 ADIFLPPGSIITPVKSGVLLNDKPYPITIYNITPFNKALW 74 (114)
T ss_pred eeEEeCCCCEEEEcCCeEEECCcEeEEEEEEecccCHHHH
Confidence 46889999988887776666665554 3344444443
No 57
>PRK03636 hypothetical protein; Provisional
Probab=29.08 E-value=45 Score=20.75 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=17.0
Q ss_pred HHHHHHHHhChHHHHHHHH
Q 036805 3 VWSMTYLMNNPRAMKKVQM 21 (111)
Q Consensus 3 ~~~~~~l~~~p~~~~~l~~ 21 (111)
.|.+.+|.+|+++.++++=
T Consensus 27 ~wiLnyl~~h~~lL~~VHF 45 (179)
T PRK03636 27 VWILNYLMSHDQLMEKVHF 45 (179)
T ss_pred HHHHHHHHhCHHHHhheee
Confidence 5999999999999999973
No 58
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=27.52 E-value=85 Score=20.28 Aligned_cols=34 Identities=0% Similarity=-0.153 Sum_probs=25.5
Q ss_pred CEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 036805 75 WYEIQAKTHVFVIRWAIGRDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 75 ~~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~Rfl 110 (111)
.+.+.+|++|+++-+.+-|-.+-|.+.. ...|||
T Consensus 221 ~~~l~~Gdivi~DN~r~lHgR~~f~~~~--~~~R~L 254 (262)
T cd00250 221 TVKLEPGDLLIFDNRRVLHGRTAFSPRY--GGDRWL 254 (262)
T ss_pred EEEcCCCCEEEEechhhhcCCCCCCCCC--CCceEE
Confidence 4678899999999998888877775432 346775
No 59
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=27.46 E-value=43 Score=16.58 Aligned_cols=8 Identities=25% Similarity=0.214 Sum_probs=3.9
Q ss_pred eCCCCEEE
Q 036805 78 IQAKTHVF 85 (111)
Q Consensus 78 ip~g~~v~ 85 (111)
|++|+.+.
T Consensus 29 i~Pg~~vT 36 (60)
T PF11720_consen 29 IRPGDAVT 36 (60)
T ss_pred eCCCCcCc
Confidence 44555444
No 60
>PRK03057 hypothetical protein; Provisional
Probab=26.91 E-value=46 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.648 Sum_probs=16.7
Q ss_pred HHHHHHHHhChHHHHHHH
Q 036805 3 VWSMTYLMNNPRAMKKVQ 20 (111)
Q Consensus 3 ~~~~~~l~~~p~~~~~l~ 20 (111)
.|.+..|.+|++..++++
T Consensus 25 ~wiLnYl~~h~~lL~~VH 42 (180)
T PRK03057 25 RFVLLYLLQHPHLLENVH 42 (180)
T ss_pred HHHHHHHHcCHHHHhhee
Confidence 699999999999999997
No 61
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=26.23 E-value=1.6e+02 Score=18.70 Aligned_cols=26 Identities=4% Similarity=0.089 Sum_probs=20.6
Q ss_pred HHHHHHHhChHHHHHHHHHHHHhhcC
Q 036805 4 WSMTYLMNNPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e~~~~~~~ 29 (111)
-++-..++.|.+|+++-+++..++-+
T Consensus 114 RiV~~~arR~QvQErlT~qIA~al~~ 139 (195)
T COG0302 114 RIVDIFARRLQVQERLTEQIADALQE 139 (195)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34566788999999999998887643
No 62
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=26.04 E-value=1.5e+02 Score=18.56 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=20.9
Q ss_pred HHHHHHHhChHHHHHHHHHHHHhhcC
Q 036805 4 WSMTYLMNNPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e~~~~~~~ 29 (111)
-..-..++.|.+|+++-.|+...+.+
T Consensus 105 RiV~~~arRlQiQERLt~qIa~al~~ 130 (185)
T cd00642 105 RIVEFFSRRLQVQERLTKQIAVAIQE 130 (185)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34567889999999999998887644
No 63
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=24.54 E-value=1.1e+02 Score=15.63 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=14.7
Q ss_pred HHHHHHHhChHHHHHHHHH
Q 036805 4 WSMTYLMNNPRAMKKVQME 22 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e 22 (111)
-++--++++||.+.+++.-
T Consensus 25 ~a~e~iaRqPE~~~~i~~~ 43 (66)
T PRK13467 25 NLFKSAARQPEMIGQLRSL 43 (66)
T ss_pred HHHHHHHcChhHHHhHHHH
Confidence 3556788999999998853
No 64
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=24.31 E-value=18 Score=19.22 Aligned_cols=18 Identities=6% Similarity=-0.069 Sum_probs=13.5
Q ss_pred cCCCCCCCCCCcCCCCCC
Q 036805 93 RDPETWQNPEEVYPGGIC 110 (111)
Q Consensus 93 ~d~~~~~~p~~F~p~Rfl 110 (111)
.|+..-|+-++|+.++|+
T Consensus 23 ~d~~ldp~s~~Fdl~~~l 40 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWL 40 (85)
T ss_pred CCCCCCCCCccccHHHHH
Confidence 466666766779999886
No 65
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=24.02 E-value=1.8e+02 Score=18.33 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=20.6
Q ss_pred HHHHHHHhChHHHHHHHHHHHHhhcC
Q 036805 4 WSMTYLMNNPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e~~~~~~~ 29 (111)
-..-..++.|.+|+++-.++...+.+
T Consensus 106 RiV~~~arRlQiQERLT~qIa~~l~~ 131 (188)
T PLN03044 106 RIAEVYARRLQTQERLTRQIADAIVE 131 (188)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34566788999999999998887643
No 66
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.27 E-value=94 Score=14.23 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHh
Q 036805 13 PRAMKKVQMEIRSL 26 (111)
Q Consensus 13 p~~~~~l~~e~~~~ 26 (111)
.++.+.++.|++.+
T Consensus 10 qEIL~EvrkEl~K~ 23 (40)
T PF08776_consen 10 QEILEEVRKELQKV 23 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666654
No 67
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=22.72 E-value=1.9e+02 Score=18.02 Aligned_cols=25 Identities=8% Similarity=0.331 Sum_probs=20.3
Q ss_pred HHHHHHhChHHHHHHHHHHHHhhcC
Q 036805 5 SMTYLMNNPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 5 ~~~~l~~~p~~~~~l~~e~~~~~~~ 29 (111)
..-..++.|.+|+++-.++...+.+
T Consensus 101 iV~~~arRlQiQERlT~qIa~~l~~ 125 (180)
T TIGR00063 101 IVEFFARRPQVQERLTQQIAEALQE 125 (180)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHH
Confidence 4566788999999999998887644
No 68
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=22.30 E-value=85 Score=17.13 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 036805 12 NPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 12 ~p~~~~~l~~e~~~~~~~ 29 (111)
.|+....+++|+.+++..
T Consensus 35 ~pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 35 QPDYLEQLRKEILEVISK 52 (88)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 388999999999998754
No 69
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=22.17 E-value=1.2e+02 Score=15.02 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=14.1
Q ss_pred HHHHHHHhChHHHHHHHH
Q 036805 4 WSMTYLMNNPRAMKKVQM 21 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~ 21 (111)
-++--++++|+...+++.
T Consensus 15 ~a~~~iaRqPe~~~~l~~ 32 (58)
T TIGR01260 15 KFLESAARQPELKPLLRT 32 (58)
T ss_pred HHHHHHHcChhHHHhHHH
Confidence 355678899999888875
No 70
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=22.13 E-value=54 Score=18.26 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=6.3
Q ss_pred CcCCCCCCC
Q 036805 103 EVYPGGICL 111 (111)
Q Consensus 103 ~F~p~Rfl~ 111 (111)
.++|+||-|
T Consensus 58 s~Np~RftD 66 (98)
T PF09086_consen 58 SVNPKRFTD 66 (98)
T ss_dssp TTSTTTTSS
T ss_pred ccChhhcCC
Confidence 468888854
No 71
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=21.96 E-value=81 Score=15.13 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=10.4
Q ss_pred hhccCCCCCC-CCCCcCC
Q 036805 90 AIGRDPETWQ-NPEEVYP 106 (111)
Q Consensus 90 ~~~~d~~~~~-~p~~F~p 106 (111)
.-+++..+|. .|.-|||
T Consensus 26 ~~r~qgpiFDTRPSPFNP 43 (52)
T PF08105_consen 26 AHRRQGPIFDTRPSPFNP 43 (52)
T ss_pred hhhccCCCCCCCCCCCCC
Confidence 3455666674 6666776
No 72
>PRK05933 type III secretion system protein; Validated
Probab=21.87 E-value=93 Score=21.56 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccc---cCCeeecCEEeCCCCEEEee
Q 036805 44 YLKAVVKETIRLQPTESLLPPRET---IENCIIEWYEIQAKTHVFVI 87 (111)
Q Consensus 44 ~l~~~i~E~lR~~~~~~~~~~r~~---~~~~~~~~~~ip~g~~v~~~ 87 (111)
-...-|+|.+++.+-....+.+.+ .-|+.++|..|.+|..|.++
T Consensus 316 RT~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd 362 (372)
T PRK05933 316 RYSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG 362 (372)
T ss_pred cccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence 355668999999877655454443 34567789999999998875
No 73
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=21.76 E-value=1.1e+02 Score=16.80 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 036805 12 NPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 12 ~p~~~~~l~~e~~~~~~~ 29 (111)
.|+...++++|+.+++..
T Consensus 41 ~pd~L~~lk~eIl~VI~K 58 (90)
T PRK13990 41 SSHLLAELKDEIIEVVKK 58 (90)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 368999999999998764
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.46 E-value=53 Score=24.24 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.0
Q ss_pred CeeecCEEeCCCCEEEeehhhhccCCCCCC--CCCCcCCCC
Q 036805 70 NCIIEWYEIQAKTHVFVIRWAIGRDPETWQ--NPEEVYPGG 108 (111)
Q Consensus 70 ~~~~~~~~ip~g~~v~~~~~~~~~d~~~~~--~p~~F~p~R 108 (111)
.+.+.+|.+|+..--++-+..+.++..+.+ .|..|.+.+
T Consensus 74 ~V~F~ayyLPk~~~e~YqfcYv~~~g~V~G~S~pFqf~~~~ 114 (546)
T PF07888_consen 74 QVQFQAYYLPKDDDEFYQFCYVDQKGEVRGASTPFQFRAPK 114 (546)
T ss_pred EEEECcccCCCCCCCeEEEEEECCCccEEEecCCcccCCCC
Confidence 356788999986555666666677777764 788887543
No 75
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=21.43 E-value=79 Score=17.34 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=12.2
Q ss_pred EEeCCCCEEEeehhhhcc
Q 036805 76 YEIQAKTHVFVIRWAIGR 93 (111)
Q Consensus 76 ~~ip~g~~v~~~~~~~~~ 93 (111)
+.+.+|+.++++....|+
T Consensus 43 ~~l~~g~~~li~p~~~H~ 60 (136)
T PF02311_consen 43 YPLKPGDLFLIPPGQPHS 60 (136)
T ss_dssp EEE-TT-EEEE-TTS-EE
T ss_pred EEEECCEEEEecCCccEE
Confidence 888999999999888776
No 76
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=20.96 E-value=56 Score=21.41 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=21.2
Q ss_pred eecCEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCC
Q 036805 72 IIEWYEIQAKTHVFVIRWAIGRDPETWQNPEEVYPGG 108 (111)
Q Consensus 72 ~~~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~R 108 (111)
.++|..++-|..|...+|.-..+++. ..|+|+|
T Consensus 60 ~iDgliltGg~nV~P~~YGee~~~~~----~~~~p~R 92 (243)
T COG2071 60 LIDGLILTGGSNVDPSLYGEEPSEKD----GPYDPER 92 (243)
T ss_pred hccEEEecCCCcCCHHHcCCCCCccc----CCCCccc
Confidence 45788888888776666554433332 4478877
No 77
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=20.87 E-value=1e+02 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCccccCCeeecCEEeCCCCEEEee
Q 036805 63 PPRETIENCIIEWYEIQAKTHVFVI 87 (111)
Q Consensus 63 ~~r~~~~~~~~~~~~ip~g~~v~~~ 87 (111)
+.|....++--....||+|+.+.+-
T Consensus 340 ~~~~~~~g~y~~~~~vp~~~~l~~~ 364 (366)
T PF10460_consen 340 VVRQDVSGTYSETVRVPAGTTLSVV 364 (366)
T ss_pred eEecCCCceeeeeEecCCCCeEEEE
Confidence 3355555555556889999987653
No 78
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=20.78 E-value=2.2e+02 Score=18.16 Aligned_cols=26 Identities=4% Similarity=0.047 Sum_probs=20.8
Q ss_pred HHHHHHHhChHHHHHHHHHHHHhhcC
Q 036805 4 WSMTYLMNNPRAMKKVQMEIRSLIGG 29 (111)
Q Consensus 4 ~~~~~l~~~p~~~~~l~~e~~~~~~~ 29 (111)
-..-..++.+.+|+++-.++...+.+
T Consensus 120 RiV~~~arRlQvQERLT~qIa~~l~~ 145 (201)
T PRK12606 120 RIVDMFARRLQIQENLTRQIATAVVT 145 (201)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34567889999999999998887643
No 79
>PHA02450 hypothetical protein
Probab=20.60 E-value=59 Score=15.34 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=4.0
Q ss_pred CCCCcCC
Q 036805 100 NPEEVYP 106 (111)
Q Consensus 100 ~p~~F~p 106 (111)
+|.+|+|
T Consensus 30 epg~fdp 36 (53)
T PHA02450 30 EPGQFDP 36 (53)
T ss_pred CCCccCC
Confidence 5555655
No 80
>PRK10456 arginine succinyltransferase; Provisional
Probab=20.55 E-value=68 Score=22.23 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHhChHH-HHHHHHHHHHhhcCCCCCCCccccc----CChh----------HHHHHHHhcCCCCCCC
Q 036805 5 SMTYLMNNPRA-MKKVQMEIRSLIGGNKGFVNENDVQ----ELHY----------LKAVVKETIRLQPTES 60 (111)
Q Consensus 5 ~~~~l~~~p~~-~~~l~~e~~~~~~~~~~~~~~~~~~----~~~~----------l~~~i~E~lR~~~~~~ 60 (111)
-+++|+.||+. .+++..|+.-+..+.+..+-|+.+. .|.| -+.+|.|.+--+|...
T Consensus 144 RfLFiA~~~erF~~~viAEmRG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIYv 214 (344)
T PRK10456 144 RFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADYLCGTGQKAFIAELMPKHPIYT 214 (344)
T ss_pred HHHHHHhhHhhhhhhhheeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCccc
Confidence 36789999986 5888899998887766677776643 3333 2367888888887743
No 81
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.34 E-value=1.3e+02 Score=20.46 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=26.1
Q ss_pred EEeCCCCEEEeehhhhccCCCCCCCCCCcCCCC
Q 036805 76 YEIQAKTHVFVIRWAIGRDPETWQNPEEVYPGG 108 (111)
Q Consensus 76 ~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~p~R 108 (111)
+.+..|+.|.++....-...+.|.||..-+-.|
T Consensus 81 ~~l~~~~~~~~s~lpti~~~e~W~DPY~~~~~R 113 (297)
T PF11059_consen 81 QQLGSGTVVDFSYLPTIMSGEVWEDPYLTGQAR 113 (297)
T ss_pred eeccCCcEEEEEEeccCCCCccccCccccCCcc
Confidence 557889999998887777799999997655444
No 82
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=20.28 E-value=58 Score=22.46 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHHHHhChHH-HHHHHHHHHHhhcCCCCCCCccccc----CChh----------HHHHHHHhcCCCCCC
Q 036805 5 SMTYLMNNPRA-MKKVQMEIRSLIGGNKGFVNENDVQ----ELHY----------LKAVVKETIRLQPTE 59 (111)
Q Consensus 5 ~~~~l~~~p~~-~~~l~~e~~~~~~~~~~~~~~~~~~----~~~~----------l~~~i~E~lR~~~~~ 59 (111)
-+++|+.||+. .+++..|+.-+..+.+..+-|+.+. .|.| -+.+|.|.+--+|..
T Consensus 143 RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIY 212 (336)
T TIGR03245 143 RLLFMAAHRERFQSRIIVEIQGVQDDNGDSPFWDAIGRHFFDLDFATAEYYSGIKSKTFIAELMPPYPIY 212 (336)
T ss_pred HHHHHHhhHhhhhhhheeeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCcc
Confidence 36789999986 5888899998887666677776643 3333 236788888877763
No 83
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.11 E-value=1.1e+02 Score=21.24 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCC---CCCCCCccccCCeeec----CEEeCCCCEEEeehhhhccCCCCCCCCC
Q 036805 45 LKAVVKETIRLQPT---ESLLPPRETIENCIIE----WYEIQAKTHVFVIRWAIGRDPETWQNPE 102 (111)
Q Consensus 45 l~~~i~E~lR~~~~---~~~~~~r~~~~~~~~~----~~~ip~g~~v~~~~~~~~~d~~~~~~p~ 102 (111)
-..+++.+..+.|| .|+++.-....|..+- .-.|..||.|.++ .-.+.--+|++|-
T Consensus 275 ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~--GspYs~l~~~~pm 337 (361)
T COG1759 275 GERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMG--GSPYSNLYWGEPM 337 (361)
T ss_pred HHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccC--CCcchhhhcCCCc
Confidence 44667777888886 4555555666664442 4567889998887 2223334555553
Done!