BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036806
         (567 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
           Features Of The Mammalian Exocyst
          Length = 571

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 224/540 (41%), Gaps = 84/540 (15%)

Query: 76  ILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLRANIXXXXXXXXXXXXDGVLTQCNNLL 135
           +++ + +    E  I +GP   LE YL ++ +++  +               L +   L 
Sbjct: 5   VISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPE---LNKVKLLF 61

Query: 136 AKAISKLEDEFRQLLKNYSKPVEPDRLFDCLPNSLRPSSGPSGQEGDSKSHAEHQKSLQA 195
            +    LE EFR L+  +SK V P  L D +       S     E       EH      
Sbjct: 62  ERGKESLESEFRSLMTRHSKVVSPVLLLDLI-------SADDELEVQEDVVLEH------ 108

Query: 196 AIYTPPTLIPPRVLPLLHDLAQQMVLAGHQQQLFRIYRDTRASVLEQSIRKL-------- 247
                   +P  VL  +  +++ +V  G  Q    +Y   R+S L++SI+ L        
Sbjct: 109 --------LPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSS 160

Query: 248 ---------GVERLSKDDVQKMPW------EVLEAKIGSWIHHMRISVKLLFAGERKICD 292
                     +    KD   K P       ++L+ +  ++IH +   VKL    E ++  
Sbjct: 161 SSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLA-QSEYRLLM 219

Query: 293 QILDGVHSLRDQCFAEVTANSVSMLLSFGEAIAKSKRSP---EKLFVLLDMYEIMREL-Q 348
           +I+   H  + + F  +  +++  L+  GE I  + R          +L ++ I+R L Q
Sbjct: 220 EIIPEHH--QKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQ 277

Query: 349 SEIQF---LFGSKACMEMRESAFSLTKRLAQTAQETFG-----DFEEAVEKDATKTTVF- 399
           ++ +F   L G+ A  + +            T+ ET G     DF + ++ D  K     
Sbjct: 278 TKPEFDQVLQGTAASTKNKLPGLI-------TSMETIGAKALEDFADNIKNDPDKEYNMP 330

Query: 400 -DGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFDTTHPPESQ--------LAAVTTRIVL 450
            DGTVH LTS  I +++ L D++ T   +    +T+    S         L+    +++ 
Sbjct: 331 KDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLG 390

Query: 451 ALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDVLGDDWVQIQRRI---VQQ 507
            LQ NL  KSK Y+DPAL+ +FL NN +YI++S+ +SE   ++       +R     ++Q
Sbjct: 391 NLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQ 450

Query: 508 HANQYKRVSWAKILQCLTVQXXXX-XXXXXXXXXXXXIVKDRFKTFNAQFEEIHQRQSQW 566
               Y+R SW K+   +  +                 ++K+RFK FN   EE+ + Q  W
Sbjct: 451 QIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVW 509


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,239,230
Number of Sequences: 62578
Number of extensions: 511491
Number of successful extensions: 1306
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 4
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)