Query 036806
Match_columns 567
No_of_seqs 170 out of 489
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 5.6E-88 1.2E-92 733.9 50.3 495 66-567 45-555 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 1.3E-60 2.7E-65 502.9 20.3 297 269-567 1-317 (371)
3 PF06419 COG6: Conserved oligo 99.3 8.1E-07 1.8E-11 99.3 50.3 401 10-487 36-477 (618)
4 PF04129 Vps52: Vps52 / Sac2 f 99.2 6.7E-07 1.4E-11 97.8 41.5 413 9-488 11-486 (508)
5 KOG1961 Vacuolar sorting prote 99.0 9.1E-06 2E-10 86.0 38.8 401 11-486 74-550 (683)
6 PF09763 Sec3_C: Exocyst compl 98.4 0.0066 1.4E-07 69.6 40.0 462 10-525 28-607 (701)
7 PF04136 Sec34: Sec34-like fam 97.9 0.00025 5.4E-09 65.1 13.6 135 20-154 15-150 (157)
8 KOG3758 Uncharacterized conser 97.5 0.26 5.5E-06 53.6 44.0 402 12-486 71-508 (655)
9 KOG2148 Exocyst protein Sec3 [ 96.8 1.1 2.4E-05 49.1 36.1 454 17-525 223-752 (867)
10 KOG2604 Subunit of cis-Golgi t 96.3 2.5 5.5E-05 46.8 37.0 105 40-154 133-241 (733)
11 PF10191 COG7: Golgi complex c 95.8 5.4 0.00012 46.3 36.1 132 209-357 200-335 (766)
12 PF07393 Sec10: Exocyst comple 89.7 44 0.00096 38.5 28.3 224 30-321 3-245 (710)
13 PF10475 DUF2450: Protein of u 87.8 9.5 0.00021 38.8 12.9 90 57-152 105-194 (291)
14 PRK10807 paraquat-inducible pr 77.2 19 0.00041 40.1 10.9 14 103-116 480-493 (547)
15 KOG0994 Extracellular matrix g 76.2 25 0.00055 41.5 11.4 14 97-110 1665-1678(1758)
16 PF07426 Dynactin_p22: Dynacti 74.6 38 0.00082 31.6 10.5 138 1-154 1-157 (174)
17 PF04100 Vps53_N: Vps53-like, 54.3 2.9E+02 0.0063 29.3 26.8 118 30-150 68-185 (383)
18 PRK09039 hypothetical protein; 46.0 3.7E+02 0.008 28.0 15.2 44 5-48 53-96 (343)
19 PF04513 Baculo_PEP_C: Baculov 43.3 1.5E+02 0.0033 26.6 8.0 62 12-79 34-96 (140)
20 PF06248 Zw10: Centromere/kine 42.0 3.3E+02 0.0071 30.7 12.7 83 66-154 95-182 (593)
21 PF14932 HAUS-augmin3: HAUS au 40.9 2.4E+02 0.0051 28.1 10.1 106 6-113 69-186 (256)
22 PF10158 LOH1CR12: Tumour supp 40.1 1.4E+02 0.0031 26.4 7.4 37 55-91 92-128 (131)
23 KOG4117 Heat shock factor bind 39.2 1E+02 0.0022 23.4 5.3 45 6-50 13-58 (73)
24 PF06825 HSBP1: Heat shock fac 39.1 94 0.002 23.0 5.1 43 10-52 4-47 (54)
25 KOG1410 Nuclear transport rece 36.7 4E+02 0.0086 30.4 11.4 57 373-430 923-979 (1082)
26 PRK10807 paraquat-inducible pr 36.1 5E+02 0.011 29.0 12.7 76 6-81 414-493 (547)
27 PF05377 FlaC_arch: Flagella a 34.7 32 0.00068 25.5 2.0 47 35-84 2-48 (55)
28 PF04065 Not3: Not1 N-terminal 34.3 1.9E+02 0.0042 28.3 8.0 80 60-142 4-90 (233)
29 PF07889 DUF1664: Protein of u 33.9 1.5E+02 0.0033 26.1 6.5 18 7-24 45-62 (126)
30 KOG4514 Uncharacterized conser 31.3 3.5E+02 0.0075 25.3 8.4 90 16-111 126-217 (222)
31 PF11887 DUF3407: Protein of u 31.2 5.5E+02 0.012 25.7 11.2 72 8-79 13-88 (267)
32 PF06008 Laminin_I: Laminin Do 30.3 5.4E+02 0.012 25.5 10.9 40 94-137 121-164 (264)
33 PF05739 SNARE: SNARE domain; 29.5 2.3E+02 0.0051 20.9 7.8 37 12-48 4-40 (63)
34 PF11932 DUF3450: Protein of u 29.3 4.8E+02 0.01 25.6 10.2 25 128-152 133-157 (251)
35 PF04124 Dor1: Dor1-like famil 29.1 6.6E+02 0.014 26.0 21.3 37 212-248 176-214 (338)
36 PF06825 HSBP1: Heat shock fac 29.0 83 0.0018 23.3 3.4 26 24-49 1-26 (54)
37 PF10805 DUF2730: Protein of u 28.8 3.2E+02 0.007 23.1 7.6 64 15-78 21-89 (106)
38 COG1463 Ttg2C ABC-type transpo 28.1 2.2E+02 0.0047 29.9 7.8 60 16-82 177-236 (359)
39 KOG0933 Structural maintenance 27.8 5.7E+02 0.012 30.5 11.2 95 26-120 882-982 (1174)
40 TIGR00996 Mtu_fam_mce virulenc 27.3 2.3E+02 0.0049 28.5 7.7 55 26-80 171-225 (291)
41 COG4942 Membrane-bound metallo 26.6 5.3E+02 0.012 27.6 10.2 72 6-80 39-110 (420)
42 TIGR03185 DNA_S_dndD DNA sulfu 26.1 9E+02 0.019 27.5 13.0 37 14-50 378-415 (650)
43 PF04906 Tweety: Tweety; Inte 26.0 4.5E+02 0.0097 28.1 9.8 72 6-77 90-162 (406)
44 PRK05590 hypothetical protein; 25.7 5.4E+02 0.012 23.8 8.7 74 283-358 27-124 (166)
45 PF03908 Sec20: Sec20; InterP 24.4 1.3E+02 0.0029 24.6 4.3 66 24-89 3-71 (92)
46 COG1579 Zn-ribbon protein, pos 23.8 7.1E+02 0.015 24.5 10.7 28 18-45 30-57 (239)
47 PF10498 IFT57: Intra-flagella 23.6 8.7E+02 0.019 25.5 11.4 35 15-49 216-250 (359)
48 PHA03332 membrane glycoprotein 23.3 7.5E+02 0.016 29.7 11.1 45 31-75 896-941 (1328)
49 KOG0994 Extracellular matrix g 23.3 9.7E+02 0.021 29.3 12.0 65 6-70 1585-1649(1758)
50 PF11467 LEDGF: Lens epitheliu 23.1 2.3E+02 0.005 24.2 5.5 73 40-137 2-74 (106)
51 KOG4424 Predicted Rho/Rac guan 22.9 1.1E+03 0.024 26.4 16.4 17 496-512 360-376 (623)
52 KOG2176 Exocyst complex, subun 22.8 5E+02 0.011 30.1 9.5 72 20-91 81-152 (800)
53 cd07623 BAR_SNX1_2 The Bin/Amp 22.6 7E+02 0.015 24.1 10.7 97 6-113 20-116 (224)
54 PF09726 Macoilin: Transmembra 22.5 1.1E+03 0.024 27.3 12.5 37 4-40 417-453 (697)
55 KOG2391 Vacuolar sorting prote 22.4 6.4E+02 0.014 26.1 9.4 38 12-49 228-269 (365)
56 KOG2150 CCR4-NOT transcription 22.1 3.3E+02 0.0071 30.2 7.8 80 60-142 4-90 (575)
57 PRK09343 prefoldin subunit bet 22.0 5.2E+02 0.011 22.4 7.8 49 100-154 68-116 (121)
58 KOG2911 Uncharacterized conser 21.9 6.8E+02 0.015 26.8 9.8 130 6-154 241-387 (439)
59 PF11932 DUF3450: Protein of u 20.1 2.4E+02 0.0053 27.8 6.1 61 86-156 114-174 (251)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-88 Score=733.85 Aligned_cols=495 Identities=43% Similarity=0.717 Sum_probs=427.4
Q ss_pred HHHHHHHHHHHHHhcccchh---hhhhhc-cCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHH
Q 036806 66 IDKTLKSAEVILAQFDLTRK---AEAKIL-KGPHEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISK 141 (567)
Q Consensus 66 Ie~~l~~~~~v~~~~~~~~~---~e~~i~-~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~ 141 (567)
++.++..++.++..|..+-. ....+. ..+..++..|++++++|+++++++.+.++.++.+....++..+++.||.+
T Consensus 45 ~~~~i~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~v~~l~~~l~~l~s~~~~~~~~~~~~~~d~l~~~am~~ 124 (623)
T KOG2344|consen 45 KEATIEQAEEIIEKFLTALNLRSSSKIISFLESREEAKNFLSAVNTLQETLQFLVSQNGLQSSKLLKAQADSLLQIAMSR 124 (623)
T ss_pred HHhhhhhHHHHHHHHhhhcccchhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHhHHHHHHHHHHH
Confidence 57777778888888877652 222332 34568899999999999999999998776523333445555699999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCCCC-CCC-CcchhhhhhhhhccccCCCCCCCCCchHHHHHHHHHH
Q 036806 142 LEDEFRQLLKNYSKPVEPDRLFDCLPNSLRPSSGPSGQ-EGD-SKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQM 219 (567)
Q Consensus 142 Le~eF~~lL~~~s~~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m 219 (567)
||+||+++|..+..+.+|..+...++......+.+... .+. ....+.+.. .+.....|+.+|++++.+|+.||++|
T Consensus 125 le~EF~~il~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~dLk~Ia~~m 202 (623)
T KOG2344|consen 125 LEKEFRQILENNREELDPERLSVRLRSSLNSKDEEASLNSDSKYSALSDEES--FGDDEIEPDLFPPDVMTDLKAIAQRM 202 (623)
T ss_pred HHHHHHHHHHhcccccchHhhhhcccccccccccccccccCccccccccccc--ccCceeeccCCCchhHHHHHHHHHHH
Confidence 99999999999999999987764444322211100000 000 000000110 22233468889999999999999999
Q ss_pred HHcCChHHHHHHHHHhhHHHHHHHHHhcCCCCCChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 036806 220 VLAGHQQQLFRIYRDTRASVLEQSIRKLGVERLSKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGERKICDQILDGVH 299 (567)
Q Consensus 220 ~~~g~~~~~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~ 299 (567)
+++||.++|+++|..+|+.+++++|..||+++++++++++|+|+.++.+|.+|++++++++++||++|+.||++||++..
T Consensus 203 i~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~Lcd~If~~~~ 282 (623)
T KOG2344|consen 203 IAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKLCDQIFSDLE 282 (623)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhHHHHHHhcHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHH
Q 036806 300 SLRDQCFAEVTANSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQ 379 (567)
Q Consensus 300 ~~~~~~f~~i~~~~~~~ll~f~~~v~~~~~~~~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~ 379 (567)
.....||.+|++.++.+|++|+++|+.++|+|+|+|++||||+++.+++|+++.+|.+..|.+++.++..++++|+++++
T Consensus 283 ~~~~~cF~eI~~~~~~~ll~F~eava~~kr~pEklf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~~~~rL~~~~~ 362 (623)
T KOG2344|consen 283 SIVESCFPEIVKEAALQLLSFPEAVAISKRSPEKLFKLLDLYETIVELRPDIERLFSDASCSEVRSQALSLLKRLGEGVR 362 (623)
T ss_pred hHHHHHHHHHHHHHHHHhhccchheeeccCCHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHH
Confidence 43227999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCccccchhHHHHHHHHHHHhcHHHHHHHHhccC----------CCCCCCChHHHHHHHHH
Q 036806 380 ETFGDFEEAVEKDATKTTVFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFD----------TTHPPESQLAAVTTRIV 449 (567)
Q Consensus 380 ~~~~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~~~----------~~~~~~~~l~~~i~~ii 449 (567)
.+|.||++.|+.|+++++++||||||||+||||||+.|++|+++|.++|.++. ++....++++.++++||
T Consensus 363 ~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~ii 442 (623)
T KOG2344|consen 363 SIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARII 442 (623)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998751 11234589999999999
Q ss_pred HHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhccccchhhhcchHHHHHHHHHHHHHHHHHHhchHHHHhhhccCCC
Q 036806 450 LALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDVLGDDWVQIQRRIVQQHANQYKRVSWAKILQCLTVQSA 529 (567)
Q Consensus 450 ~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s~L~~~Lg~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~ 529 (567)
..|+.||++||+.|+|++|++||||||+|||+++|++++|+.+||++|+++|..++++|++.|++++|++|+++|.+.+.
T Consensus 443 ~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s 522 (623)
T KOG2344|consen 443 LALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRLLLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGS 522 (623)
T ss_pred HHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHccCCC
Q 036806 530 PGSGGGDSGSISRGIVKDRFKTFNAQFEEIHQRQSQWT 567 (567)
Q Consensus 530 ~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~Q~~w~ 567 (567)
.. + ++++|+.+||||++||++|||+|++|++|+
T Consensus 523 ~~--~---~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wv 555 (623)
T KOG2344|consen 523 SS--G---GKKSKEVLKERFKLFNEQFEEVYKKQSQWV 555 (623)
T ss_pred cc--c---cccCHHHHHHHHHHHHHHHHHHHHhhCcee
Confidence 21 1 248899999999999999999999999995
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=1.3e-60 Score=502.86 Aligned_cols=297 Identities=42% Similarity=0.769 Sum_probs=266.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH---hccCChhHHHHHhhHHHHHH
Q 036806 269 IGSWIHHMRISVKLLFAGERKICDQILDGVHSLRDQCFAEVTANSVSMLLSFGEAIA---KSKRSPEKLFVLLDMYEIMR 345 (567)
Q Consensus 269 i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~f~~~v~---~~~~~~~klf~lLdm~e~L~ 345 (567)
|.+|+.++.+++..|+++|++||++||+..+...+.||.+++.+++..|++|+++|+ ...++|+++|.+||||++|.
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~l~ 80 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSSIADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEALS 80 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 578999999999999999999999999988766889999999999999999999999 78899999999999999999
Q ss_pred hcHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCCccccchhHHHHHHHHHHHhcHHH
Q 036806 346 ELQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQETFGDFEEAVEK--DATKTTVFDGTVHPLTSYVINYVKFLFDYRST 423 (567)
Q Consensus 346 ~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef~~~I~~--~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~ 423 (567)
++.|.++.+|.|.++..++.++.+++++|+++++++|.+|.+.|++ ++.+.+|+||||||+|++|||||+.|++|+++
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~ 160 (371)
T PF03081_consen 81 ELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDT 160 (371)
T ss_dssp HHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHH
T ss_pred HHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999999999999999999 77778889999999999999999999999999
Q ss_pred HHHHHhccCC-----C----------CCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhcccc
Q 036806 424 LKLLFEEFDT-----T----------HPPESQLAAVTTRIVLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSE 488 (567)
Q Consensus 424 l~~ll~~~~~-----~----------~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s~ 488 (567)
++.+|...++ + .++.++++.||.++|++|+.|||+||+.|+|++|++||||||+|||.+++++|+
T Consensus 161 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~~s~ 240 (371)
T PF03081_consen 161 LESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLKRSE 240 (371)
T ss_dssp HHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred HHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999976322 1 114578999999999999999999999999999999999999999999999999
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHhchHHHHhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHccCCC
Q 036806 489 AKDVLGDDWVQIQRRIVQQHANQYKRVSWAKILQCLTVQSAPGSGGGDSGSISRGIVKDRFKTFNAQFEEIHQRQSQWT 567 (567)
Q Consensus 489 L~~~Lg~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~Q~~w~ 567 (567)
|..++|++|.+++.+++++|++.|++++|+||+++|.+++... +++.++++|+.+||||++||++|||+|+.|++|+
T Consensus 241 l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~--~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~~~ 317 (371)
T PF03081_consen 241 LKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSS--GGKLSSKERELLKEKFKKFNSAFEEIYKAQKTWK 317 (371)
T ss_dssp HHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T---SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cCCCCCccHHHHHHHHHHHHHHHHHHHHcCccee
Confidence 9999999999999999999999999988999999999862221 2235678899999999999999999999999996
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.29 E-value=8.1e-07 Score=99.32 Aligned_cols=401 Identities=17% Similarity=0.234 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhh
Q 036806 10 LRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAK 89 (567)
Q Consensus 10 ~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~ 89 (567)
...+...+.+.|.+-.+.-+.|......+.++|........++..++..|+...+.++.--..+...+++|.....++..
T Consensus 36 ~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~ 115 (618)
T PF06419_consen 36 FLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDA 115 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hccC--CcccHHHHHHHHHHHHHHHH---HhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 036806 90 ILKG--PHEDLESYLEAIDQLRANIK---FFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKPVEPDRLFD 164 (567)
Q Consensus 90 i~~g--p~~~l~~YL~av~~l~~a~~---~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~ 164 (567)
+..| |-+ +.|..+++|+++.-+ .+-..++.+..-.+++.+...++.|..+|-.....-.... .-
T Consensus 116 L~~~~~~v~--~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l----~~----- 184 (618)
T PF06419_consen 116 LTSGEEPVD--DEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSL----NL----- 184 (618)
T ss_pred HhCCCCCCC--HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hh-----
Confidence 8888 532 689999998876443 3333444444556778888889988888766553322221 00
Q ss_pred cCCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHc-CChHHHHHHHHHhhHHHHH-H
Q 036806 165 CLPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQMVLA-GHQQQLFRIYRDTRASVLE-Q 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m~~~-g~~~~~~~~Y~~~R~~~l~-~ 242 (567)
.. |++...|++-..+|... .+.+.|++.|+..|+..|. +
T Consensus 185 ----------------------------------~~-----~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~ 225 (618)
T PF06419_consen 185 ----------------------------------DN-----PEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRR 225 (618)
T ss_pred ----------------------------------cC-----cccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 00 12233444444444332 3567999999999988765 5
Q ss_pred HHHhcCCCCC------ChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCchh-h---hhHH-----
Q 036806 243 SIRKLGVERL------SKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGERKICDQILDGVHSLR-D---QCFA----- 307 (567)
Q Consensus 243 ~L~~L~~~~~------~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~-~---~~f~----- 307 (567)
.+..|....- +++--..=| -..=+.+-.|++.. .++|+.++..+|....... . ..|.
T Consensus 226 F~~aLt~g~~~~~~~rPIel~AhDP-~RYvGDmLAwvHq~-------~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~ 297 (618)
T PF06419_consen 226 FLDALTRGGPGGSPSRPIELHAHDP-LRYVGDMLAWVHQA-------IASEREFLESLFKFDEDEIAEGSSSGFDSNPWS 297 (618)
T ss_pred HHHHHcCCCCCCCCCCchhhhccCh-HHHHHHHHHHHHHH-------hhhHHHHHHHHhcccccccccccccccccccch
Confidence 5666643221 111110001 11123456677654 4799999999998532110 0 0111
Q ss_pred -HHHHHHHHHHH--------HHHHHHHhccCCh---hHHHHHhhHHHHHHhcHHHHHHhhCcchhHHHHHHHHHHHHHHH
Q 036806 308 -EVTANSVSMLL--------SFGEAIAKSKRSP---EKLFVLLDMYEIMRELQSEIQFLFGSKACMEMRESAFSLTKRLA 375 (567)
Q Consensus 308 -~i~~~~~~~ll--------~f~~~v~~~~~~~---~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~ 375 (567)
..+...++..+ .-.+.|..+...| -+++.+|..|... +..+... .. .+...+..|.
T Consensus 298 ~~~~~~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~------~~k~i~~-~s-----~L~~tl~~L~ 365 (618)
T PF06419_consen 298 EELINELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMT------FSKLIGE-DS-----SLIETLKELQ 365 (618)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH------HHHHcCC-Cc-----hHHHHHHHHH
Confidence 11111111111 1122222233333 3566677777543 3333322 11 2334444445
Q ss_pred HHHHHH----HHHHHHHHHhcccCCCCCCccccchhHHHHHHHHHHHhc-HHHHHHHHhccCCCCCCC--ChHHHHHHHH
Q 036806 376 QTAQET----FGDFEEAVEKDATKTTVFDGTVHPLTSYVINYVKFLFDY-RSTLKLLFEEFDTTHPPE--SQLAAVTTRI 448 (567)
Q Consensus 376 ~~~~~~----~~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y-~~~l~~ll~~~~~~~~~~--~~l~~~i~~i 448 (567)
+.|.+. +......+...+...+|+|=...+.....++-|+.+.+- ..++. +.++.. ..|...+..+
T Consensus 366 ~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~il~~~~~s~~-------~~~~~~~~~~~~~Il~~~ 438 (618)
T PF06419_consen 366 DLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREILDVYDSSLS-------PDDDRENDNDFKPILDEP 438 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccC-------CccchhhhhHHHHHHHHH
Confidence 554444 444445555552335566766666665555555554432 11111 111222 5688888888
Q ss_pred HHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhccc
Q 036806 449 VLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRS 487 (567)
Q Consensus 449 i~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s 487 (567)
|+-+....+..+....++.-+.||++|...+|...+..-
T Consensus 439 idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~ 477 (618)
T PF06419_consen 439 IDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPF 477 (618)
T ss_pred hHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccCh
Confidence 999988888888877776668999999999999999774
No 4
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.18 E-value=6.7e-07 Score=97.80 Aligned_cols=413 Identities=21% Similarity=0.262 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhh
Q 036806 9 ALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEA 88 (567)
Q Consensus 9 ~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~ 88 (567)
....++..|...+...+++=..|...|.+|.+.|+.+...|.-++.+...++..-+|-..+...+..++..--...+.=.
T Consensus 11 ~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~ 90 (508)
T PF04129_consen 11 KESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIR 90 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred hhccCCcccHHHHHHHHHHHHHHHHHhhcCCC---CCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 036806 89 KILKGPHEDLESYLEAIDQLRANIKFFSSNKS---LKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKPVEPDRLFDC 165 (567)
Q Consensus 89 ~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~---~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~ 165 (567)
.|.+||.++ .|+..+-++..-..++..+.. .++.......++.|-.+|+.++-+.|-..+..-+.|..+..
T Consensus 91 ~I~~~~v~e--~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q---- 164 (508)
T PF04129_consen 91 SICEGPVNE--QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQ---- 164 (508)
T ss_pred hHhcCCCCH--HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH----
Confidence 888898654 788876666554544443222 23344455677788889999999999888877665532111
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHcCC--hHHHHHHHHHhhHHHHHH-
Q 036806 166 LPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQMVLAGH--QQQLFRIYRDTRASVLEQ- 242 (567)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m~~~g~--~~~~~~~Y~~~R~~~l~~- 242 (567)
+....+=.-+.+..+|...+. ..|+.++|++.=+.+...
T Consensus 165 --------------------------------------~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~ 206 (508)
T PF04129_consen 165 --------------------------------------IIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSY 206 (508)
T ss_pred --------------------------------------HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233334556666665432 236677776654443322
Q ss_pred ------HHHhcCCCCCCh-------------------------H---------Hhhc--c------chH--------HHH
Q 036806 243 ------SIRKLGVERLSK-------------------------D---------DVQK--M------PWE--------VLE 266 (567)
Q Consensus 243 ------~L~~L~~~~~~~-------------------------~---------~~~~--~------~~~--------~~~ 266 (567)
+|..|....... . ++.. . +.- ..|
T Consensus 207 F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E 286 (508)
T PF04129_consen 207 FKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIE 286 (508)
T ss_pred HHHHHHHHHHHHhhcccccccccCCCccccccccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhhcccccCCHH
Confidence 222221110000 0 0000 0 000 023
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhHHHHHHh
Q 036806 267 AKIGSWIHHMRISVKLLFAGERKICDQILDGVHSLRDQCFAEVTANSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMRE 346 (567)
Q Consensus 267 ~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~f~~~v~~~~~~~~klf~lLdm~e~L~~ 346 (567)
..++.|..++--. ..+|+..|.+-|.......+.+|.+|-.+++..+..+.+.... .++ ..+.+|-|.-....
T Consensus 287 ~iFRS~~~~L~Dn----~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~~~~~l~--~~~-D~iglll~Irl~~~ 359 (508)
T PF04129_consen 287 EIFRSLNKALIDN----ATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEFTEQLLS--NSY-DAIGLLLCIRLNQR 359 (508)
T ss_pred HHHHHHHHHHHHh----hhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHH--cCC-cHHHHHHHHHHHHH
Confidence 4444455544332 3689999999998744445678999988888888888876542 233 34444444433333
Q ss_pred cHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCccccchhHHHHHHHHHHHhcHHHHH
Q 036806 347 LQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQETFGDFEEAVEKDATK-TTVFDGTVHPLTSYVINYVKFLFDYRSTLK 425 (567)
Q Consensus 347 l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~~~-~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~ 425 (567)
..-.+.. +.+.-+..-+..+...|=-....++..=.++|+.-..+ ..+++.+.|++|+.--.|+..| -
T Consensus 360 ~~~~~~~----R~ip~ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sl-------l 428 (508)
T PF04129_consen 360 YQFEMQR----RRIPVLDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSL-------L 428 (508)
T ss_pred HHHHHHh----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHH-------H
Confidence 3322222 11222233334444444444445555556777764443 3447888999887644444433 3
Q ss_pred HHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhcccc
Q 036806 426 LLFEEFDTTHPPESQLAAVTTRIVLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSE 488 (567)
Q Consensus 426 ~ll~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s~ 488 (567)
.+-... +...+...+.++-..++.-|..-|+.++++..+.+||.||+.+|+..+....
T Consensus 429 ~L~~~~-----~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~~ 486 (508)
T PF04129_consen 429 KLSSEH-----PDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSERT 486 (508)
T ss_pred HHhccC-----chhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhcc
Confidence 332211 1122566667777777666777788888888899999999999999987643
No 5
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.01 E-value=9.1e-06 Score=86.02 Aligned_cols=401 Identities=18% Similarity=0.254 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhh
Q 036806 11 RERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKI 90 (567)
Q Consensus 11 ~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i 90 (567)
......+...+..-+.+-.+|...|.+|..+|+.+...|.-++.+...++..=+|-..+...+...++-.-+..+.=.+|
T Consensus 74 s~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I 153 (683)
T KOG1961|consen 74 SENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTI 153 (683)
T ss_pred hhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHH
Confidence 33455566667777888899999999999999999999999999888888888888888999999999999988887888
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHhhcCCCCC---CchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCC
Q 036806 91 LKGPHEDLESYLEAIDQLRANIKFFSSNKSLK---SSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKPVEPDRLFDCLP 167 (567)
Q Consensus 91 ~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~---~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~ 167 (567)
.+||..+ ..|++++..|..-+.+-......+ +.+..-.-+..|-.+|+.+.-+..-+-+..-++|..--
T Consensus 154 ~~g~vne-~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~fRkp~tn~------- 225 (683)
T KOG1961|consen 154 VDGDVNE-PEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAFRKPMTNY------- 225 (683)
T ss_pred HcCCCCc-hHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-------
Confidence 8998654 599999999987777665211112 12222234456677888888777766666656554310
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCC-CCchHHHHHHHHHHHHcCCh--HHHHHHHHHhhHHHHHH--
Q 036806 168 NSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIP-PRVLPLLHDLAQQMVLAGHQ--QQLFRIYRDTRASVLEQ-- 242 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~L~~Ia~~m~~~g~~--~~~~~~Y~~~R~~~l~~-- 242 (567)
.+| ..++=.-+-+..++...+.. .|.+++|++.-+.+...
T Consensus 226 -----------------------------------qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF 270 (683)
T KOG1961|consen 226 -----------------------------------QIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYF 270 (683)
T ss_pred -----------------------------------chHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 33444445566666655432 37777777655543322
Q ss_pred --HHHhc---------------CCCCC-ChHH----------hhc----------------------cch------HHHH
Q 036806 243 --SIRKL---------------GVERL-SKDD----------VQK----------------------MPW------EVLE 266 (567)
Q Consensus 243 --~L~~L---------------~~~~~-~~~~----------~~~----------------------~~~------~~~~ 266 (567)
....| |++-- ++.- +.+ +|. ...|
T Consensus 271 ~sY~~~L~klq~~~iat~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae~~k~~~E 350 (683)
T KOG1961|consen 271 KSYIRRLTKLQFEEIATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAEANKYYIE 350 (683)
T ss_pred HHHHHHHHHHHHHHHhccccccccccccCccHHHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHhcCCCcHH
Confidence 22222 21110 0000 000 000 0123
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHH-HhccCChhHHHHHhhHHHHHH
Q 036806 267 AKIGSWIHHMRISVKLLFAGERKICDQILDGVHSLRDQCFAEVTANSVSMLLSFGEAI-AKSKRSPEKLFVLLDMYEIMR 345 (567)
Q Consensus 267 ~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~f~~~v-~~~~~~~~klf~lLdm~e~L~ 345 (567)
..+..|-.++.-- ..+||-.|...|.-..+..+.+|.+|-.+++...+..-+.+ +. +.+ .+.+|-|.-...
T Consensus 351 ~lfrs~~~al~dn----~tsEYlFl~efF~~~gd~~~~if~aIf~~tls~~~k~~~~~Is~---~~D-aIgvll~Iri~~ 422 (683)
T KOG1961|consen 351 ALFRSLHLALLDN----ATSEYLFLEEFFAVSGDQAEDIFYAIFGKTLSVILKYLESLISD---CYD-AIGVLLCIRIIH 422 (683)
T ss_pred HHHHHHHHHHHhc----chhHHHHHHHHHhhcCchHHHHHHHHhcccHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHH
Confidence 3444555544321 35799999999943333455678887666666555444332 21 111 111111111111
Q ss_pred --------hcHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCCC--CCccccchhHHHHHHH
Q 036806 346 --------ELQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQETFGDF-EEAVEKDATKTTV--FDGTVHPLTSYVINYV 414 (567)
Q Consensus 346 --------~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef-~~~I~~~~~~~~~--~dg~Vh~lT~~vm~yl 414 (567)
...|.++.-..+ ...-+.-|+. .+.++ .++++....+..+ +|.+-|++|+-.-.|+
T Consensus 423 k~ql~~~rR~VP~ld~y~n~--------v~~~LWPRFq-----~V~d~h~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ 489 (683)
T KOG1961|consen 423 KLQLIAARRRVPALDSYWNS--------VLIFLWPRFQ-----LVMDMHCESLRKADITTLWEKLDTRPHYITRRYAEFL 489 (683)
T ss_pred HHHHHHHhcCCcchhhHHHH--------HHHHHHHHHH-----HHHHHHHHHHHhcChhhcccccCCCchHHHHHHHHHH
Confidence 112333222111 0011111111 11222 2444433333333 7899999998655444
Q ss_pred HHHHhcHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhcc
Q 036806 415 KFLFDYRSTLKLLFEEFDTTHPPESQLAAVTTRIVLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRR 486 (567)
Q Consensus 415 ~~L~~y~~~l~~ll~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~ 486 (567)
..+. .+=...+++.+ +.....++....+.-+..-++.++++--+.+||.||+.||..-+..
T Consensus 490 ss~~-------~l~v~~~~~~~----~~~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 490 SSFL-------MLNVTYGNEQD----VERLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred HHHH-------HHHHhccccch----HHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHh
Confidence 4332 22222222211 5555666666666677777888999999999999999999987753
No 6
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=98.36 E-value=0.0066 Score=69.60 Aligned_cols=462 Identities=15% Similarity=0.216 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhh
Q 036806 10 LRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAK 89 (567)
Q Consensus 10 ~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~ 89 (567)
....+..|.+.+..+-.--++|...|+.|+..|..+...|.-|..+.+.|+....|=..-++.++.++..-+...+....
T Consensus 28 s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~ 107 (701)
T PF09763_consen 28 SEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEA 107 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 44557777788888888889999999999999999999999999999999999999999999999999999999888888
Q ss_pred hccCC---cccHHHHHHHHHHHHHHHHHhhcCC-CCCCc----------hhHHhHH-HHHHHHHHHHHHHHHHHHHHhcC
Q 036806 90 ILKGP---HEDLESYLEAIDQLRANIKFFSSNK-SLKSS----------DGVLTQC-NNLLAKAISKLEDEFRQLLKNYS 154 (567)
Q Consensus 90 i~~gp---~~~l~~YL~av~~l~~a~~~l~~~~-~~~~~----------~~~l~~~-~~Ll~~a~~~Le~eF~~lL~~~s 154 (567)
|..+| ..++..--+|+..|..|+.-+.... ..... ...+.+. ..-.++.+..|...|..+-....
T Consensus 108 L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~~~F~~~~~~~~ 187 (701)
T PF09763_consen 108 LRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKRLSRFLNNMFKNLVDELL 187 (701)
T ss_pred HhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 2568888889999999998865321 00100 1112222 33455667777777755544322
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCC-CCchHHHHHHHHHHHHcC--ChHHHHHH
Q 036806 155 KPVEPDRLFDCLPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIP-PRVLPLLHDLAQQMVLAG--HQQQLFRI 231 (567)
Q Consensus 155 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~L~~Ia~~m~~~g--~~~~~~~~ 231 (567)
...+ . + + ..+.. ..|.+.+ ...+-....+..|+-... ....+++.
T Consensus 188 ~~~~--~-----~-----~-----~~~~~---------------~~~~h~~~~~~L~~ys~Li~~lK~~d~~~y~~L~~~ 235 (701)
T PF09763_consen 188 SDKD--S-----F-----S-----QSGKL---------------SLPKHSSLHNELLPYSGLILWLKEVDPESYQALIKA 235 (701)
T ss_pred hhhc--c-----c-----c-----ccccC---------------ChHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHH
Confidence 1111 0 0 0 00000 0000000 012222344555554432 12355555
Q ss_pred HHHhhHHHHHHHHHhc--------CC-------CCCChHH--hhccchHH--------------------------HHHH
Q 036806 232 YRDTRASVLEQSIRKL--------GV-------ERLSKDD--VQKMPWEV--------------------------LEAK 268 (567)
Q Consensus 232 Y~~~R~~~l~~~L~~L--------~~-------~~~~~~~--~~~~~~~~--------------------------~~~~ 268 (567)
|...-+....+-+..+ .. +...... .....|.. ..++
T Consensus 236 Y~~~~~~ly~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~s~~~~~~~~~~~~~~~~~~ 315 (701)
T PF09763_consen 236 YNSSMSKLYEREIRDFFEALKKSISKASGDENDESLFTSSSPELSTEWISLRKSRKLTLDRSKTLRNIDMWAPSPKSSGK 315 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhcccccccchhcccccccccccccCCCCccchhcccccCCCCcccc
Confidence 6544443333322221 10 0000000 00000000 0000
Q ss_pred ---HHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCc-h---------------------------hhhhHHHHHHHHHHHH
Q 036806 269 ---IGSWIHHMRISVKLLFAGERKICDQILDGVHS-L---------------------------RDQCFAEVTANSVSML 317 (567)
Q Consensus 269 ---i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~-~---------------------------~~~~f~~i~~~~~~~l 317 (567)
-.....++..+.. +...|..+|...|.-... . .+...+..+...+..+
T Consensus 316 ~~~~~a~~~~L~el~p-l~~~EQ~Fi~~FFhl~s~~~~~f~~~v~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~~~m~~i 394 (701)
T PF09763_consen 316 LRFDEAFEQALEELEP-LCIREQNFIIDFFHLSSNSTLDFADYVKQSSPSERRSSDLSSSKPMEPDRESAKDVRQMMSEI 394 (701)
T ss_pred cCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCccCChhhHHhcCCcccccccccccccccCcchhHHHHHHHHHHHH
Confidence 1122233333333 456899999999863221 0 0011112222233332
Q ss_pred HH--------HHHHHHhccCChhHHHHHhhHHHHHHhcHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 036806 318 LS--------FGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQETFGDFEEA- 388 (567)
Q Consensus 318 l~--------f~~~v~~~~~~~~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef~~~- 388 (567)
+. |.+.+. +..|-....+|- .|....-..+ .....-+..++.++....++.|..|++.
T Consensus 395 F~~l~~~l~~~v~~~~--~~dp~~~~~~l~---~le~~~~~~~--------~s~~~fl~~~L~~l~~~~k~~f~~fv~~Q 461 (701)
T PF09763_consen 395 FGFLENELQSFVDWAE--KNDPLQCVSMLV---YLERYIKSLE--------QSNQSFLSNLLQKLQVRLKRLFDKFVDEQ 461 (701)
T ss_pred HHHHHHHHHHHHHHHH--ccCchhHHHHHH---HHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222211 222321122221 1111111110 0123355778888888889999999733
Q ss_pred HHhcc-cCCCCC-CccccchhHHHHHHHHHHHhcHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCC--
Q 036806 389 VEKDA-TKTTVF-DGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFDTTHPPESQLAAVTTRIVLALQNNLDGKSKQYK-- 464 (567)
Q Consensus 389 I~~~~-~~~~~~-dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~-- 464 (567)
|+.-. ++.... -.|| +.|++.+..|-..++.++............+......++.++...|+..++.-+
T Consensus 462 i~~ie~~k~~~k~r~GV-------l~~i~~fp~f~~~~E~~~~~~~~~~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~ 534 (701)
T PF09763_consen 462 IKSIEETKVSKKKRKGV-------LPFIKKFPEFVKRVESMFSGAERAREDRSLVDKAYEKLVRAMFDSLERIAKLSPKN 534 (701)
T ss_pred HHHHHHhccccCCCCcc-------chHHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 32211 221111 2244 446666666666777777654321112234777888899999999999987543
Q ss_pred ---------ChhhhhHHhhhhHHHHHHHhccccchhhhcchHHHHHHHHHHHHHHHH----HHhchHHHHhhhc
Q 036806 465 ---------DPALTQLFLMNNIHYIVRSVRRSEAKDVLGDDWVQIQRRIVQQHANQY----KRVSWAKILQCLT 525 (567)
Q Consensus 465 ---------d~aL~~iFLlNN~~yI~~~v~~s~L~~~Lg~~w~~~~~~~i~~~~~~Y----~~~sW~~vl~~L~ 525 (567)
...-.+|.++=|+||+...+..-.....| +.|.++-....+++...| ++-.++++..+..
T Consensus 535 ~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l-~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~ 607 (701)
T PF09763_consen 535 SGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVL-EEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFE 607 (701)
T ss_pred ccccCccccccchhhHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 23568999999999999999775442222 456555555555555555 4456667766654
No 7
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=97.92 E-value=0.00025 Score=65.09 Aligned_cols=135 Identities=10% Similarity=0.215 Sum_probs=104.7
Q ss_pred HHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhcc-CCcccH
Q 036806 20 SLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILK-GPHEDL 98 (567)
Q Consensus 20 ~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~-gp~~~l 98 (567)
....--.-++++...|+.+......++..-..++.....|-.-++.++..-+.|...+.||+........+.. |+...-
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~ 94 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNS 94 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccc
Confidence 3333333344444455556666666666666677778888888999999999999999999986555555443 233456
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036806 99 ESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYS 154 (567)
Q Consensus 99 ~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s 154 (567)
+.|+..|.+|.+.+.||..|++++....=+.|.+.++.+|+.-+-..|...|..-+
T Consensus 95 ~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~ 150 (157)
T PF04136_consen 95 DSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSAT 150 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988888899999999999999999999998743
No 8
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.26 Score=53.57 Aligned_cols=402 Identities=16% Similarity=0.211 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhc
Q 036806 12 ERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKIL 91 (567)
Q Consensus 12 a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~ 91 (567)
.+..-+...+.+..+....|.....++-.++++.-.+---+-..|..++.-..-|+.-.+-+...++.|...++.-..+.
T Consensus 71 ~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~ 150 (655)
T KOG3758|consen 71 KEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLT 150 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 34455556666666666666666666666665554444445567888888889999999999999999998776656666
Q ss_pred c-CCcccHHHHHHHHHHHHHHHH---HhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCC
Q 036806 92 K-GPHEDLESYLEAIDQLRANIK---FFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKPVEPDRLFDCLP 167 (567)
Q Consensus 92 ~-gp~~~l~~YL~av~~l~~a~~---~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~ 167 (567)
. ||-. +.|..+|+|+++.-+ ++-...+..+.-...+.+....+.|.++|-. -... +..-++
T Consensus 151 ~~g~i~--e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r---~~qs--~e~~~l-------- 215 (655)
T KOG3758|consen 151 ESGPID--EDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFR---WSQS--SECRNL-------- 215 (655)
T ss_pred cCCcch--HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH---Hhhh--HhhcCC--------
Confidence 5 6642 578899998877543 3333333344445566666666666665543 1111 000000
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHhhHHHH-HHHHH
Q 036806 168 NSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQMVLAG-HQQQLFRIYRDTRASVL-EQSIR 245 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m~~~g-~~~~~~~~Y~~~R~~~l-~~~L~ 245 (567)
++ . =.+++.+-|++-...+.... --+.|++-|+..|+..| .+.+.
T Consensus 216 -------------~~-------------t-------~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fis 262 (655)
T KOG3758|consen 216 -------------TG-------------T-------DSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFIS 262 (655)
T ss_pred -------------cc-------------c-------cchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 01345556666655554322 23589999999998755 67888
Q ss_pred hc--CCC-CC--ChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCc-hh-----hhhHHHHHHHHH
Q 036806 246 KL--GVE-RL--SKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGERKICDQILDGVHS-LR-----DQCFAEVTANSV 314 (567)
Q Consensus 246 ~L--~~~-~~--~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~-~~-----~~~f~~i~~~~~ 314 (567)
.| |.. .. +++--..=|- ..=+.+-.|++.. .++|+++...+|..... .+ ..-...+..+..
T Consensus 263 altrg~~~~~PrpIel~ahDPl-RyIGDmLawlHq~-------ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~d 334 (655)
T KOG3758|consen 263 ALTRGGPGGMPRPIELHAHDPL-RYIGDMLAWLHQA-------IANEKELVEALFDFKKEDLQDNISISENLPNVLGGID 334 (655)
T ss_pred HHccCCCCCCCCCccccCCChH-HHHHHHHHHHHHH-------hhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchh
Confidence 88 311 11 1111111011 1123355677654 47999999999931100 00 000111122222
Q ss_pred HHHHH-HH-----------HHHHhccCChh---HHHHHhhHHHHHHhcHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHH
Q 036806 315 SMLLS-FG-----------EAIAKSKRSPE---KLFVLLDMYEIMRELQSEIQFLFGSKACMEMRESAFSLTKRLAQTAQ 379 (567)
Q Consensus 315 ~~ll~-f~-----------~~v~~~~~~~~---klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~~~~~ 379 (567)
..|+. .. +.|...-.++- |+..+|..|... |..+..+.+ .+...++.|.++++
T Consensus 335 n~lld~i~~gvcrPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~------fs~~v~~ds------~l~~~l~~L~d~s~ 402 (655)
T KOG3758|consen 335 NKLLDDILEGVCRPLKVRVEQILQAEKNAIILFKISNLLKFYRVT------FSKLVQDDS------ALLNTLKELEDISK 402 (655)
T ss_pred hhHHHHHHHHhcchhHHHHHHHHHcCcCceeehhHHHHHHHHHHH------HHHHhcccH------HHHHHHHHHHHHHH
Confidence 22221 11 22222233332 333444444221 222332211 24456666677766
Q ss_pred HHHHHHHH-HHHhcccC--CCCCCccccc-hhHHHHHHHHHHHhcHHHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHH
Q 036806 380 ETFGDFEE-AVEKDATK--TTVFDGTVHP-LTSYVINYVKFLFDYRSTLKLLFEEFDTTHPPESQLAAVTTRIVLALQNN 455 (567)
Q Consensus 380 ~~~~ef~~-~I~~~~~~--~~~~dg~Vh~-lT~~vm~yl~~L~~y~~~l~~ll~~~~~~~~~~~~l~~~i~~ii~~L~~~ 455 (567)
..|-...+ .+..-..+ .+|.|=.-.| ++.+++.+...+.-|..+.....+. ..+..-.+++.+-.+|..-..+
T Consensus 403 q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~~---~~df~~l~s~vldpilq~c~~s 479 (655)
T KOG3758|consen 403 QRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDGE---QLDFKLLLSCVLDPILQMCQKS 479 (655)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhhhhhcccccc---ccchHHHHHHHHHHHHHHHHHH
Confidence 66555442 22211111 2333644444 4445555555554454433322111 1111223344444444444444
Q ss_pred HHhhhccCCChhhhhHHhhhhHHHHHHHhcc
Q 036806 456 LDGKSKQYKDPALTQLFLMNNIHYIVRSVRR 486 (567)
Q Consensus 456 Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~ 486 (567)
-|.+-. -+|.+. -+||+|-.+.|.+.+.+
T Consensus 480 ae~~lp-~~d~~~-~if~iNcL~~iks~l~~ 508 (655)
T KOG3758|consen 480 AEAHLP-TSDKGS-LIFMINCLDLIKSRLAR 508 (655)
T ss_pred HHhcCC-Cccccc-ceehhhhHHHHHhHHHH
Confidence 434322 123221 59999999999988865
No 9
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1.1 Score=49.06 Aligned_cols=454 Identities=17% Similarity=0.203 Sum_probs=221.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCCcc
Q 036806 17 VRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGPHE 96 (567)
Q Consensus 17 l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp~~ 96 (567)
+-..|+.--+-.++|..-|++++.-|.-+..+|.-|......+-....|=-+.++.++.|+.+.++.++....+..|.=.
T Consensus 223 ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL~egdf~ 302 (867)
T KOG2148|consen 223 LLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAALTEGDFD 302 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhcccCCcc
Confidence 33445555566778888899999999999999988888777777777788888999999999999988887776655322
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCC----------chhHHhHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 036806 97 DLESYLEAIDQLRANIKFFSSNKSLKS----------SDGVLTQCNNL-LAKAISKLEDEFRQLLKNYSKPVEPDRLFDC 165 (567)
Q Consensus 97 ~l~~YL~av~~l~~a~~~l~~~~~~~~----------~~~~l~~~~~L-l~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~ 165 (567)
+.+.=++|..-...|+.-+. |.++.. +...+..+..+ ..+.+..|-..|.++-..-+ .|-..
T Consensus 303 ~a~~~ieact~aA~al~q~~-~~~ldp~~l~m~Avkdqr~eleklk~~FvrrlssfLnnlF~~l~d~~s--sd~~~---- 375 (867)
T KOG2148|consen 303 EADQGIEACTWAAKALRQLM-NPNLDPIYLNMRAVKDQRAELEKLKATFVRRLSSFLNNLFASLGDFLS--SDKSY---- 375 (867)
T ss_pred ccchhHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--hhhHh----
Confidence 22233444444444444443 333321 11122222222 33555555556644332100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCC-CCchHHHHHHHHHHHHc--CChHHHHHHHHHhhHHHHHH
Q 036806 166 LPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIP-PRVLPLLHDLAQQMVLA--GHQQQLFRIYRDTRASVLEQ 242 (567)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~L~~Ia~~m~~~--g~~~~~~~~Y~~~R~~~l~~ 242 (567)
+ + .....|.+=+ -..+..+..+.+|+-.. ++.....++|++.=+....+
T Consensus 376 --------------------h---s-----~eL~lPnhs~~~r~l~pya~Lm~wlK~~d~k~~~~l~k~Y~dslnlLy~R 427 (867)
T KOG2148|consen 376 --------------------H---S-----TELTLPNHSDLHRKLRPYARLMQWLKGLDKKCYGGLRKAYCDSLNLLYRR 427 (867)
T ss_pred --------------------h---h-----hccccCCchHHHHhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Confidence 0 0 0001121100 01233345566777654 33345666777654444433
Q ss_pred HHHhc--------CCCCCChHH-------hhc-----cchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCc--
Q 036806 243 SIRKL--------GVERLSKDD-------VQK-----MPWEVLEAKIGSWIHHMRISVKLLFAGERKICDQILDGVHS-- 300 (567)
Q Consensus 243 ~L~~L--------~~~~~~~~~-------~~~-----~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~-- 300 (567)
-...+ -....+++. .++ .++-.+-.+...|...+.++-+..|+ +|.+.|.+...+
T Consensus 428 e~rnFfe~lk~kvt~~rnpte~L~gStg~sqks~~~tsa~ssl~~~~~~~~s~l~v~d~~~f~---~l~e~vlaeLep~~ 504 (867)
T KOG2148|consen 428 EARNFFEELKIKVTVSRNPTEWLEGSTGSSQKSNTDTSAVSSLYAKMLTIFSPLLVADREVFD---QLIETVLAELEPPG 504 (867)
T ss_pred HHHHHHHHHHHhccccCCCcccccCCcccccccCCCccchhhHHhhhccccCchhhhhHHHHH---HHHHHHHHhcCCcc
Confidence 33222 111111111 111 12222333333344433332222221 122222222111
Q ss_pred hhhhhHHH-HHHHHHH-HHHHHHH---HH-Hh-------ccCChh--HHH-HHhhHHHHHHhcHHHHHHh----------
Q 036806 301 LRDQCFAE-VTANSVS-MLLSFGE---AI-AK-------SKRSPE--KLF-VLLDMYEIMRELQSEIQFL---------- 354 (567)
Q Consensus 301 ~~~~~f~~-i~~~~~~-~ll~f~~---~v-~~-------~~~~~~--klf-~lLdm~e~L~~l~p~~~~l---------- 354 (567)
.++.-|.. +-. +.. .+-.+-+ .+ .. .+.+|+ .+- .+.++|++|..-...|-..
T Consensus 505 ~aeqdF~~kFF~-s~s~~ma~~dd~d~gi~ds~s~dg~p~k~s~~ne~vr~~m~~Lfd~ie~el~sfi~~~~kidp~n~l 583 (867)
T KOG2148|consen 505 LAEQDFVKKFFH-SQSNNMAGADDDDLGIMDSDSLDGKPGKNSPDNEAVRESMQDLFDCIEPELYSFIDWAYKIDPFNSL 583 (867)
T ss_pred cchhHHHHHHHh-hCccccccccccccccccccccCCCCCCCCchHHHHHHHHHHHHhhccHHHHHHHHHHHhcCchhhh
Confidence 01111100 000 000 0000000 00 00 111232 222 2445666554322111111
Q ss_pred ----------hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--C-CCCCCccccchhHHHHHHHHHHHhcH
Q 036806 355 ----------FGSKACMEMRESAFSLTKRLAQTAQETFGDFEEAVEKDAT--K-TTVFDGTVHPLTSYVINYVKFLFDYR 421 (567)
Q Consensus 355 ----------f~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~~--~-~~~~dg~Vh~lT~~vm~yl~~L~~y~ 421 (567)
+++... .-...+.-.+..+.-.+++.|..|+..-...-. + ..-.-+||-| |+-.+..+-
T Consensus 584 ~mfv~mt~~vls~Q~~-Dpasfls~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa 655 (867)
T KOG2148|consen 584 YMFVIMTEHVLSAQKA-DPASFLSLTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFA 655 (867)
T ss_pred hHHHHHHHHhhccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHH
Confidence 111100 001223334455556677778887643222111 1 1223455655 666677777
Q ss_pred HHHHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhccccchhhhcchHH-HH
Q 036806 422 STLKLLFEEFDTTHPPESQLAAVTTRIVLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDVLGDDWV-QI 500 (567)
Q Consensus 422 ~~l~~ll~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s~L~~~Lg~~w~-~~ 500 (567)
...+.++.... ..+.+...-..++.+...+++.-|..|+. +-+.+-+|-|+|++...+-. |. +-+.+.. ..
T Consensus 656 ~raE~if~nae----rRtdlekaYtklvravfvgiek~Aqq~pK-tp~dVv~mENyh~~y~tLs~--Lk-is~lda~kke 727 (867)
T KOG2148|consen 656 RRAEIIFENAE----RRTDLEKAYTKLVRAVFVGIEKIAQQDPK-TPADVVLMENYHHFYATLSD--LK-ISCLDAAKKE 727 (867)
T ss_pred HHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhHHHHHHHHHH--Hh-ccchhHHHHH
Confidence 77888886432 23457777788899999999999988876 34788899999999877643 22 2233333 34
Q ss_pred HHHHHHHHHHHHHHhchHHHHhhhc
Q 036806 501 QRRIVQQHANQYKRVSWAKILQCLT 525 (567)
Q Consensus 501 ~~~~i~~~~~~Y~~~sW~~vl~~L~ 525 (567)
+......+.+.|+..+.+.-+..|.
T Consensus 728 aka~~~dhl~ayV~~~~GrPLekln 752 (867)
T KOG2148|consen 728 AKALYADHLAAYVKESMGRPLEKLN 752 (867)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHH
Confidence 4555566778887777776665553
No 10
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=2.5 Score=46.76 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=70.9
Q ss_pred hhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhh--ccCCc--ccHHHHHHHHHHHHHHHHHh
Q 036806 40 YRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKI--LKGPH--EDLESYLEAIDQLRANIKFF 115 (567)
Q Consensus 40 ~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i--~~gp~--~~l~~YL~av~~l~~a~~~l 115 (567)
++++.+..+-.-++.+-.+|..+.++|-+.| .||+. +|.+- ++.|. .+-.+|...+.+|.+.+.|+
T Consensus 133 ~kt~~l~eace~l~~eq~kl~elae~I~k~L-------~yF~~---le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l 202 (733)
T KOG2604|consen 133 QKTSALHEACEQLLEEQSKLSELAEGIRKKL-------HYFAE---LEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFL 202 (733)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHH---HHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444555555555444 33333 33321 23443 56689999999999999999
Q ss_pred hcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036806 116 SSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYS 154 (567)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s 154 (567)
..|.+++..-.-+-..+..+.+|+.-.-.+|.++|.+..
T Consensus 203 ~en~~fkd~~~Y~~k~kqcL~kA~~lik~y~~~vlkq~t 241 (733)
T KOG2604|consen 203 EENPDFKDAPAYLGKYKQCLSKALGLIKTYFTNVLKQTT 241 (733)
T ss_pred HhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998755555678899999999999999999998744
No 11
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.77 E-value=5.4 Score=46.30 Aligned_cols=132 Identities=20% Similarity=0.366 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhHHHHHHHHHhcCCCCCChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 036806 209 LPLLHDLAQQMVLAGHQQQLFRIYRDTRASVLEQSIRKLGVERLSKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGER 288 (567)
Q Consensus 209 ~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~ 288 (567)
+...+...+-+...|....+.+.|..+|+..|.+.=....... .......|+..+--.+-.++..|.
T Consensus 200 ~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~-------------~~~~~~~~L~~fyd~ll~~l~~E~ 266 (766)
T PF10191_consen 200 VDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD-------------QSQSFAEWLPSFYDELLSLLHQEL 266 (766)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666788899999999999987764322221100 012356677665444445678999
Q ss_pred HHhhhcCCCCCchhhhhHHHHHHHHHHHHH-HHHHHHHhc-cCC-hh-HHHHHhhHHHHHHhcHHHHHHhhCc
Q 036806 289 KICDQILDGVHSLRDQCFAEVTANSVSMLL-SFGEAIAKS-KRS-PE-KLFVLLDMYEIMRELQSEIQFLFGS 357 (567)
Q Consensus 289 ~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll-~f~~~v~~~-~~~-~~-klf~lLdm~e~L~~l~p~~~~lf~~ 357 (567)
+-|.+||+.... +...+....+..|. .|...|... +++ |. ++..++++|.+-.++.-.++.+|..
T Consensus 267 ~w~~~vF~~~~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 267 KWCSQVFPDESP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHHcCCchh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999996532 23333333333332 233323221 222 32 5888899998888887778877764
No 12
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=89.72 E-value=44 Score=38.55 Aligned_cols=224 Identities=13% Similarity=0.182 Sum_probs=112.2
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccch--hhhhh--hccCCcccHHHHHHHH
Q 036806 30 NMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTR--KAEAK--ILKGPHEDLESYLEAI 105 (567)
Q Consensus 30 ~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~--~~e~~--i~~gp~~~l~~YL~av 105 (567)
+...-+..+|.|++.+..++.|+-.+-..+.+.+.+-..+...+.--.+.+.... ..+.+ ...+| +.-.++.
T Consensus 3 ~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~----~~~~~~A 78 (710)
T PF07393_consen 3 EAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDP----EDPEEAA 78 (710)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCc----cchHHHH
Confidence 3456677888899999999988877665555554444444333333333333221 12222 11223 1223333
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCCCCCCCCcc
Q 036806 106 DQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKPVEPDRLFDCLPNSLRPSSGPSGQEGDSKS 185 (567)
Q Consensus 106 ~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (567)
.-++....+-+...+.........+.+...+.=...|-++|..--.
T Consensus 79 ~il~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~---------------------------------- 124 (710)
T PF07393_consen 79 KILRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYR---------------------------------- 124 (710)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 3333333333322122223333344444444444444455532110
Q ss_pred hhhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHcCChHHHHHHHHHhhHHHHHHHHHhcC-CCCCChHHhhccchHH
Q 036806 186 HAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQMVLAGHQQQLFRIYRDTRASVLEQSIRKLG-VERLSKDDVQKMPWEV 264 (567)
Q Consensus 186 ~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~~L~~L~-~~~~~~~~~~~~~~~~ 264 (567)
......++.+|..|...+.+..|++.|+..+.-.... ..++ ......+ ..|+.
T Consensus 125 --------------------~~d~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~----~~~~~ 178 (710)
T PF07393_consen 125 --------------------EGDYERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDE----EIWEK 178 (710)
T ss_pred --------------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchh----HHHHh
Confidence 1234678999999999888889999999988655521 1111 0111000 01221
Q ss_pred H----------HHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCCCCch----hhhhHHHHHHHHHHHHHHHH
Q 036806 265 L----------EAKIGSWIHHMRISVKLLFAGERKICDQILDGVHSL----RDQCFAEVTANSVSMLLSFG 321 (567)
Q Consensus 265 ~----------~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~~~~~----~~~~f~~i~~~~~~~ll~f~ 321 (567)
+ ..........+ +..+..|.++.+.|||...++ -..+|.+.+.+-+..+++-+
T Consensus 179 l~d~~~~~~~~~~~l~~~~~~i----~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a 245 (710)
T PF07393_consen 179 LSDPDSHPPINEESLDAFFEDI----RDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEA 245 (710)
T ss_pred ccCcccccccchHHHHHHHHHH----HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 11222233333 335689999999999875442 23345555555555555443
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=87.80 E-value=9.5 Score=38.79 Aligned_cols=90 Identities=14% Similarity=0.245 Sum_probs=64.0
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHH
Q 036806 57 HSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLA 136 (567)
Q Consensus 57 ~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~ 136 (567)
-.+.+.++|+...+..+..+..-++.....+..+..| .|..|++=+.+..+-+..-..+......-.+++++..
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~------dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~ 178 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEG------DYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHH
Confidence 3466778899999999999888888777777666544 5666666555444444433444445566678889999
Q ss_pred HHHHHHHHHHHHHHHh
Q 036806 137 KAISKLEDEFRQLLKN 152 (567)
Q Consensus 137 ~a~~~Le~eF~~lL~~ 152 (567)
.-..+|+..|..+...
T Consensus 179 ~i~~~ld~~l~~~~~~ 194 (291)
T PF10475_consen 179 LIEEQLDSDLSKVCQD 194 (291)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887643
No 14
>PRK10807 paraquat-inducible protein B; Provisional
Probab=77.22 E-value=19 Score=40.10 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 036806 103 EAIDQLRANIKFFS 116 (567)
Q Consensus 103 ~av~~l~~a~~~l~ 116 (567)
.+++.+..++.-+.
T Consensus 480 ~TL~~l~~~l~~~~ 493 (547)
T PRK10807 480 KTLRELNRSMQGFQ 493 (547)
T ss_pred HHHHHHHHHHhhcC
Confidence 44444444454444
No 15
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.19 E-value=25 Score=41.51 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHHH
Q 036806 97 DLESYLEAIDQLRA 110 (567)
Q Consensus 97 ~l~~YL~av~~l~~ 110 (567)
.+..|.+.+++|.+
T Consensus 1665 ~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999988854
No 16
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=74.62 E-value=38 Score=31.64 Aligned_cols=138 Identities=19% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCchhhhHHHHHHHHHHHHHH-H---hhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHH
Q 036806 1 MGVPQAMGALRERAAFVRESL-Q---KSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVI 76 (567)
Q Consensus 1 ~~~~~~~~~~~a~~~~l~~~L-~---ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v 76 (567)
|++..+.+.++.+++.|...+ + ....-+..+...|.++...|..+- .-++.|...+..++++
T Consensus 1 ~~~~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~--------------s~re~i~~l~k~~~eL 66 (174)
T PF07426_consen 1 MAEMSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAA--------------SKRERIKELFKRIEEL 66 (174)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHH--------------cccHHHHHHHHHHHHH
Confidence 777788899999999999888 2 111123444455555555554431 1145666777777777
Q ss_pred HHhcccchhhh---------hhhccCCcccHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHHh---HHHHHHHHHHHH
Q 036806 77 LAQFDLTRKAE---------AKILKGPHEDLESYLEAIDQLRANIKFFSSNKSLKS---SDGVLT---QCNNLLAKAISK 141 (567)
Q Consensus 77 ~~~~~~~~~~e---------~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~---~~~~l~---~~~~Ll~~a~~~ 141 (567)
..|-|..--.+ ..|... ..++...-+.+.++.+.-.++.+ ..++. ....+. .+..--..-+..
T Consensus 67 ~~YLDP~~~e~~~l~~~~K~~~ILa~-e~~i~~~~~~Leki~~L~pvL~s-e~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ 144 (174)
T PF07426_consen 67 NKYLDPNFIEEIQLPDSAKLQIILAE-EDEIKSTAELLEKIKSLEPVLDS-ESIRNVPELCDKLQKLSQIHLEQQEESEE 144 (174)
T ss_pred HHHcCchhhhhcccchHHHHHHHHHc-cHHHHHHHHHHHHHHHhhhhcCc-HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666531111 112211 12233333333444433333332 11221 122222 222223345667
Q ss_pred HHHHHHHHHHhcC
Q 036806 142 LEDEFRQLLKNYS 154 (567)
Q Consensus 142 Le~eF~~lL~~~s 154 (567)
|.+++..+|..|.
T Consensus 145 ls~~~~~Ll~~YN 157 (174)
T PF07426_consen 145 LSEEVQELLQQYN 157 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888887764
No 17
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=54.28 E-value=2.9e+02 Score=29.26 Aligned_cols=118 Identities=12% Similarity=0.229 Sum_probs=79.2
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCCcccHHHHHHHHHHHH
Q 036806 30 NMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLR 109 (567)
Q Consensus 30 ~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp~~~l~~YL~av~~l~ 109 (567)
++..-...+..+-..-|..|.-|-++.+.|..+.+|+-.++..+.++.+--+...+++..+....=.+...-|.+|.+|-
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33344445556666667777777788889999999999999999999999888887877655432245556666666664
Q ss_pred HHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 036806 110 ANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLL 150 (567)
Q Consensus 110 ~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL 150 (567)
.+|+.=.+...-.....++..+-..-..++-.+|..+.
T Consensus 148 ---~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f 185 (383)
T PF04100_consen 148 ---EHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELF 185 (383)
T ss_pred ---HHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44442111111223456677777777777888887765
No 18
>PRK09039 hypothetical protein; Validated
Probab=45.96 E-value=3.7e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 036806 5 QAMGALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETA 48 (567)
Q Consensus 5 ~~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~ 48 (567)
..++.+.+.+..|-+.|.-..+-..++...|..+..++..++..
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~ 96 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAE 96 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888888888888888888777755443
No 19
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=43.26 E-value=1.5e+02 Score=26.57 Aligned_cols=62 Identities=16% Similarity=0.389 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHh
Q 036806 12 ERAAFVRESLQK-SQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQ 79 (567)
Q Consensus 12 a~~~~l~~~L~k-s~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~ 79 (567)
|.+..+.+.+.. -..+..++...+..+|.||..+...+ +..+..+++.+...|.-+..++..
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L------~~aln~Lq~~~rneLtnlnsil~n 96 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNL------NDALNQLQDTLRNELTNLNSILNN 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666655 46677777777777777666665554 344444444444444444444433
No 20
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=42.04 E-value=3.3e+02 Score=30.68 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCCCCC-----chhHHhHHHHHHHHHHH
Q 036806 66 IDKTLKSAEVILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLRANIKFFSSNKSLKS-----SDGVLTQCNNLLAKAIS 140 (567)
Q Consensus 66 Ie~~l~~~~~v~~~~~~~~~~e~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~-----~~~~l~~~~~Ll~~a~~ 140 (567)
.+..+..++++........+.+..+.. ..|+.|++.|.++-..+..-.+.+. ....-.+...+.+.-..
T Consensus 95 ~~~~l~~L~~L~~i~~~l~~~~~al~~------~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~ 168 (593)
T PF06248_consen 95 NEQLLEVLEQLQEIDELLEEVEEALKE------GNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQY 168 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 344555566665555554444433222 4678888877776666654211111 12233467788888888
Q ss_pred HHHHHHHHHHHhcC
Q 036806 141 KLEDEFRQLLKNYS 154 (567)
Q Consensus 141 ~Le~eF~~lL~~~s 154 (567)
.|.++|.+++....
T Consensus 169 ~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 169 QLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHhheeecC
Confidence 89999988887644
No 21
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=40.94 E-value=2.4e+02 Score=28.07 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhc----CCCcchhh----hhHhhhhhHHHHHHHHHHHH
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAM----RPTQIRTH----SIRKAHENIDKTLKSAEVIL 77 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i----~Pi~~~t~----~L~~~~~nIe~~l~~~~~v~ 77 (567)
..+.+++.++.|++....-.++-+.+...=....+.+..++... ..+..... .+.+.....+..+..+..++
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776666655555555555544444444444444321 11111111 12233444455555555555
Q ss_pred Hhcccchhhh----hhhccCCcccHHHHHHHHHHHHHHHH
Q 036806 78 AQFDLTRKAE----AKILKGPHEDLESYLEAIDQLRANIK 113 (567)
Q Consensus 78 ~~~~~~~~~e----~~i~~gp~~~l~~YL~av~~l~~a~~ 113 (567)
..+......+ ++.+. ..+++.|+..-++-..++.
T Consensus 149 ~~~~~~~~~~~~~~~~fls--q~~l~~Y~~~ee~~t~~L~ 186 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLS--QMPLEQYLSQEEQFTKYLT 186 (256)
T ss_pred HHHHHhcccccCCCCchhh--hCCHHHHHHHHHHHHHHHH
Confidence 5554432211 11110 1457777777776666665
No 22
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=40.10 E-value=1.4e+02 Score=26.43 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=22.9
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhc
Q 036806 55 RTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKIL 91 (567)
Q Consensus 55 ~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~ 91 (567)
-...|++.+.+++.++..++.+-...-...++|+..|
T Consensus 92 ls~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLep~~~ 128 (131)
T PF10158_consen 92 LSQQLSRCQSLLNQTVPSIETLNEILPEEERLEPFVW 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCCCCCC
Confidence 3455667777777777777776666555555555433
No 23
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=39.25 E-value=1e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=30.8
Q ss_pred hhHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcC
Q 036806 6 AMGALRERAAF-VRESLQKSQTITDNMVSILGSFDYRLSALETAMR 50 (567)
Q Consensus 6 ~~~~~~a~~~~-l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~ 50 (567)
+|..+..-++- |++.-.|-..|+++|.+....+..|.-.||+.|.
T Consensus 13 Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIa 58 (73)
T KOG4117|consen 13 NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIA 58 (73)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 56666555553 4445567788888888888887777777777653
No 24
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=39.09 E-value=94 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHhhhhhhhhhhhhhcCCC
Q 036806 10 LRERAAFVRESL-QKSQTITDNMVSILGSFDYRLSALETAMRPT 52 (567)
Q Consensus 10 ~~a~~~~l~~~L-~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi 52 (567)
+.+-++-|-+.| .|-.++++.|.+.+..+..|+-.||+.|.-+
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444 3557788888888888888888888877543
No 25
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.70 E-value=4e+02 Score=30.38 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCccccchhHHHHHHHHHHHhcHHHHHHHHhc
Q 036806 373 RLAQTAQETFGDFEEAVEKDATKTTVFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEE 430 (567)
Q Consensus 373 ~L~~~~~~~~~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~ 430 (567)
-+...|..++........+.-++..+| ..-.++|....+++..+.++.+.+.++|+.
T Consensus 923 ~v~ssccsslD~i~tYlfk~itr~~~p-~~~~~~tpa~~r~l~~i~q~Pdil~qml~t 979 (1082)
T KOG1410|consen 923 IVSSSCCSSLDTIVTYLFKRITRSTKP-TRKVGMTPAGDRFLHAIQQHPDILQQMLST 979 (1082)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCC-cCcCCCChhHHHHHHHHHhChHHHHHHHHH
Confidence 445667778888777776665554444 444588999999999999999999988764
No 26
>PRK10807 paraquat-inducible protein B; Provisional
Probab=36.12 E-value=5e+02 Score=29.00 Aligned_cols=76 Identities=12% Similarity=0.266 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhhhhhhhhhhhcCCCcc--hhhhhHhhhhhHHHHHHHHHHHHHhcc
Q 036806 6 AMGALRERAAFVRESLQKS--QTITDNMVSILGSFDYRLSALETAMRPTQI--RTHSIRKAHENIDKTLKSAEVILAQFD 81 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks--~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~--~t~~L~~~~~nIe~~l~~~~~v~~~~~ 81 (567)
+++.+.+.+..+-+.+++- +++..++...|.+.+.-+..+++++.-+.. .....+.+..++++++..++.++..|.
T Consensus 414 ~l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~ 493 (547)
T PRK10807 414 GLAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQ 493 (547)
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555555555444444443 333444444444444444433333311000 012223333455555555555555544
No 27
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.71 E-value=32 Score=25.53 Aligned_cols=47 Identities=11% Similarity=0.354 Sum_probs=26.6
Q ss_pred HhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccch
Q 036806 35 LGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTR 84 (567)
Q Consensus 35 L~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~ 84 (567)
++.+++++++++..+.-+.++.+ .+++.|++.=..+.++++-|+..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~---~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENE---EISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777776544444333 334444444455566777776643
No 28
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.34 E-value=1.9e+02 Score=28.35 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=59.3
Q ss_pred HhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCC-------cccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHH
Q 036806 60 RKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGP-------HEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCN 132 (567)
Q Consensus 60 ~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp-------~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~ 132 (567)
+++|..||+++..+..=+.-|+.. .+.+--.+. ..||..=+.-|.|+++.|.-..+++..+ ....|....
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i--~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~R 80 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEI--YEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENR 80 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHH
Confidence 567889999999998888877764 222211121 1578888888889999998888777767 566788889
Q ss_pred HHHHHHHHHH
Q 036806 133 NLLAKAISKL 142 (567)
Q Consensus 133 ~Ll~~a~~~L 142 (567)
.+++.+|.+.
T Consensus 81 k~IE~~MErF 90 (233)
T PF04065_consen 81 KLIEEQMERF 90 (233)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 29
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.91 E-value=1.5e+02 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 036806 7 MGALRERAAFVRESLQKS 24 (567)
Q Consensus 7 ~~~~~a~~~~l~~~L~ks 24 (567)
...+...++.+.++|..+
T Consensus 45 ~~~v~kql~~vs~~l~~t 62 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSST 62 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555555
No 30
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=3.5e+02 Score=25.31 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=43.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHH-HHHhcccchhhhhhhcc-C
Q 036806 16 FVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEV-ILAQFDLTRKAEAKILK-G 93 (567)
Q Consensus 16 ~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~-v~~~~~~~~~~e~~i~~-g 93 (567)
+|.+-=..++.+..+|...|..+.+-|..+..-- ...+|.-.+-+++.-+.+|. |...|-...+.|.+-+. +
T Consensus 126 VL~DlE~~~~el~~~vD~llr~lgg~lh~is~lt------~~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~ksm~ 199 (222)
T KOG4514|consen 126 VLSDLELEAQELASSVDNLLRNLGGLLHSISSLT------ADNVQVYRNAVNKLTDTLDANIKCQYQLLAKAEEITKSMK 199 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh------hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3444444456666777777777776666655421 23445555556665555554 23333333333322121 3
Q ss_pred CcccHHHHHHHHHHHHHH
Q 036806 94 PHEDLESYLEAIDQLRAN 111 (567)
Q Consensus 94 p~~~l~~YL~av~~l~~a 111 (567)
|...|..-+.-+.|+.+.
T Consensus 200 pv~~La~qir~irRlve~ 217 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEM 217 (222)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 434444444444444433
No 31
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=31.23 E-value=5.5e+02 Score=25.67 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHh----hHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHh
Q 036806 8 GALRERAAFVRESLQK----SQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQ 79 (567)
Q Consensus 8 ~~~~a~~~~l~~~L~k----s~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~ 79 (567)
+++.+.+..+.++|+- -.++.+++..+|..++.++..+.+.+.-+..-+..+......|..+++.+..+...
T Consensus 13 ~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~t 88 (267)
T PF11887_consen 13 AKLNATLSALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRT 88 (267)
T ss_pred HHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566666666666643 34555666677777777777777666555544555555555666665555544433
No 32
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=30.33 E-value=5.4e+02 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.464 Sum_probs=18.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCCC----chhHHhHHHHHHHH
Q 036806 94 PHEDLESYLEAIDQLRANIKFFSSNKSLKS----SDGVLTQCNNLLAK 137 (567)
Q Consensus 94 p~~~l~~YL~av~~l~~a~~~l~~~~~~~~----~~~~l~~~~~Ll~~ 137 (567)
|..++..-++-+.++ +..++.. ++.. ....+..|..|++.
T Consensus 121 ~~~~l~~~l~ea~~m---L~emr~r-~f~~~~~~Ae~El~~A~~LL~~ 164 (264)
T PF06008_consen 121 PSEDLQRALAEAQRM---LEEMRKR-DFTPQRQNAEDELKEAEDLLSR 164 (264)
T ss_pred CHHHHHHHHHHHHHH---HHHHHhc-cchhHHHHHHHHHHHHHHHHHH
Confidence 445555555544444 5555432 2221 23345555555543
No 33
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=29.52 E-value=2.3e+02 Score=20.88 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 036806 12 ERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETA 48 (567)
Q Consensus 12 a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~ 48 (567)
..+..|.+.+..-++++.+|...+..=..-|-.++..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~ 40 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDN 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHH
Confidence 4677888888888999999988666644444444443
No 34
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.35 E-value=4.8e+02 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 036806 128 LTQCNNLLAKAISKLEDEFRQLLKN 152 (567)
Q Consensus 128 l~~~~~Ll~~a~~~Le~eF~~lL~~ 152 (567)
+.+...+++.+--.+-+-|+++|..
T Consensus 133 l~~L~~~l~~~dv~~~ek~r~vlea 157 (251)
T PF11932_consen 133 LARLRAMLDDADVSLAEKFRRVLEA 157 (251)
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHH
Confidence 3444555555555555555555553
No 35
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=29.09 E-value=6.6e+02 Score=25.95 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHhhHHHHHHHHHhcC
Q 036806 212 LHDLAQQMVLAGH--QQQLFRIYRDTRASVLEQSIRKLG 248 (567)
Q Consensus 212 L~~Ia~~m~~~g~--~~~~~~~Y~~~R~~~l~~~L~~L~ 248 (567)
.-++..|+.+.+. +.+....|-..|..++...|..+.
T Consensus 176 ~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~ 214 (338)
T PF04124_consen 176 CIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEID 214 (338)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHh
Confidence 3344555544432 234677888889999998777764
No 36
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=28.95 E-value=83 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhc
Q 036806 24 SQTITDNMVSILGSFDYRLSALETAM 49 (567)
Q Consensus 24 s~~lt~~m~~iL~~~d~rL~~l~~~i 49 (567)
|..+|.-+...|..+.+|+..++..|
T Consensus 1 s~elt~~v~~lL~qmq~kFq~mS~~I 26 (54)
T PF06825_consen 1 SQELTAFVQNLLQQMQDKFQTMSDQI 26 (54)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999998886
No 37
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.80 E-value=3.2e+02 Score=23.10 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=38.1
Q ss_pred HHHHHHHHhhHHHHHHHH---HHHhhhhhhhhhhhhhcC--CCcchhhhhHhhhhhHHHHHHHHHHHHH
Q 036806 15 AFVRESLQKSQTITDNMV---SILGSFDYRLSALETAMR--PTQIRTHSIRKAHENIDKTLKSAEVILA 78 (567)
Q Consensus 15 ~~l~~~L~ks~~lt~~m~---~iL~~~d~rL~~l~~~i~--Pi~~~t~~L~~~~~nIe~~l~~~~~v~~ 78 (567)
..+.--|.++..-..++. ..+...+.|++.+|..+. |-+.+...|+..=.+++..+..++.-++
T Consensus 21 ~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 21 GIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444555443344444 457778899999999875 6566666665555555555555444443
No 38
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.10 E-value=2.2e+02 Score=29.87 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhccc
Q 036806 16 FVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDL 82 (567)
Q Consensus 16 ~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~ 82 (567)
.|.+.|...+++++.+. .|...+...+.-+..-...+....+.+++.+..+..++.....
T Consensus 177 ~l~~~l~~l~~~~~~ln-------~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~ 236 (359)
T COG1463 177 QLNALLDNLAQFTDALN-------ARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAA 236 (359)
T ss_pred HHHHHHHHHHHHHHHHH-------hcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444 3444443333333333445555666777777777777666554
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.81 E-value=5.7e+02 Score=30.53 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhcc-CCcccHHHH---
Q 036806 26 TITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILK-GPHEDLESY--- 101 (567)
Q Consensus 26 ~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~-gp~~~l~~Y--- 101 (567)
...+.|..++.+.+.-++......+|++.-...+++...+=..+-..++.+...|+-.......+.. |...|++.|
T Consensus 882 ~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~ 961 (1174)
T KOG0933|consen 882 DIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPH 961 (1174)
T ss_pred hhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHh
Confidence 3334455566666666677777778888888888899998889999999999999988766665544 344667666
Q ss_pred --HHHHHHHHHHHHHhhcCCC
Q 036806 102 --LEAIDQLRANIKFFSSNKS 120 (567)
Q Consensus 102 --L~av~~l~~a~~~l~~~~~ 120 (567)
=+-+.+|++-..-+++..+
T Consensus 962 ~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 962 EAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred HHHHHHHHhhHHHHHHHhhcC
Confidence 6667777777777765443
No 40
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=27.33 E-value=2.3e+02 Score=28.48 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhc
Q 036806 26 TITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQF 80 (567)
Q Consensus 26 ~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~ 80 (567)
++.+++..+...+..+...+.+.+.-+..-+..+....+.|...+..+..+.+..
T Consensus 171 ~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l 225 (291)
T TIGR00996 171 NLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQL 225 (291)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555544333334455555566666666666655543
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.65 E-value=5.3e+02 Score=27.63 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhc
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQF 80 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~ 80 (567)
..+....+++.+.+.+..+++-+..+.+-|.+.+..+.++++.+.- ....++++..+|+..-..+..+....
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~---s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE---TADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888887633 33456777777777666665554443
No 42
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.15 E-value=9e+02 Score=27.55 Aligned_cols=37 Identities=8% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHhhhhhhhhhhhhhcC
Q 036806 14 AAFVRESLQ-KSQTITDNMVSILGSFDYRLSALETAMR 50 (567)
Q Consensus 14 ~~~l~~~L~-ks~~lt~~m~~iL~~~d~rL~~l~~~i~ 50 (567)
+..+-+.+. ....-..+...-+..++..+..+++.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333 2344455555566677777777777653
No 43
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.03 E-value=4.5e+02 Score=28.13 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-hhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHH
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVSILG-SFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVIL 77 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~-~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~ 77 (567)
|+.++.-.....+..+...++++.+...-|+ ..+..|.+||....+-..-...++.++.+.+.....++.+-
T Consensus 90 gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~ 162 (406)
T PF04906_consen 90 GVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAENVVQQLDELP 162 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6666777777777777777777777776554 57888888888764433334445566666666666666544
No 44
>PRK05590 hypothetical protein; Provisional
Probab=25.70 E-value=5.4e+02 Score=23.80 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=45.6
Q ss_pred HhHHHHHHhhhcCCCCCchhhhhHHHHHHH---HHHHHHHHHHHHHhccC------------------ChhHHHHHhhHH
Q 036806 283 LFAGERKICDQILDGVHSLRDQCFAEVTAN---SVSMLLSFGEAIAKSKR------------------SPEKLFVLLDMY 341 (567)
Q Consensus 283 l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~---~~~~ll~f~~~v~~~~~------------------~~~klf~lLdm~ 341 (567)
+|..|+.+..+|.......-.-.+.++|.. .+..+..|-+.|..+.. ..+||+ ..|.
T Consensus 27 y~~~ek~iy~~iL~~~~~~~~gtv~ela~k~~~~~~~~~GfldGin~sl~~~~~le~~~edt~v~l~id~ekLy--~nM~ 104 (166)
T PRK05590 27 YGSVEKNIYTQILANHKEVVEGTVKELAEKFGTSVVFFMGFLDGINDSLKEPLDLEKLEEDTEVSLDIDFEKLY--YNML 104 (166)
T ss_pred HHHHHHHHHHHHHcCCCceeeeeHHHHHHHhCCChhhhhhhhhcchhhhCCCCCccccccCceEEEeeCHHHHH--HHHH
Confidence 567888888888876543222234444433 24456677777654332 234655 4677
Q ss_pred HHHHhc---HHHHHHhhCcc
Q 036806 342 EIMREL---QSEIQFLFGSK 358 (567)
Q Consensus 342 e~L~~l---~p~~~~lf~~~ 358 (567)
++-.+. .|.++.+|+++
T Consensus 105 ~aka~~lY~l~~w~~i~~~e 124 (166)
T PRK05590 105 DAKADWLYNLPQWEAIFSEE 124 (166)
T ss_pred HHHHHHHhccHhHHhhccHH
Confidence 777765 48899999863
No 45
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=24.37 E-value=1.3e+02 Score=24.61 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhh---hHHHHHHHHHHHHHhcccchhhhhh
Q 036806 24 SQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHE---NIDKTLKSAEVILAQFDLTRKAEAK 89 (567)
Q Consensus 24 s~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~---nIe~~l~~~~~v~~~~~~~~~~e~~ 89 (567)
++++|..+...-.-+.+.+.+-+.++..+..++..|+..++ +++..+..-.+++..+......+..
T Consensus 3 s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~ 71 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRI 71 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555555555555555555555554443 5666777777777777765444433
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.76 E-value=7.1e+02 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=10.4
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q 036806 18 RESLQKSQTITDNMVSILGSFDYRLSAL 45 (567)
Q Consensus 18 ~~~L~ks~~lt~~m~~iL~~~d~rL~~l 45 (567)
.+.|.+-+..-..+...+...+..+..+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~l 57 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDL 57 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 47
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.58 E-value=8.7e+02 Score=25.50 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhc
Q 036806 15 AFVRESLQKSQTITDNMVSILGSFDYRLSALETAM 49 (567)
Q Consensus 15 ~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i 49 (567)
.--+..|...++.-+.|..++......|.++...+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI 250 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33456666666777777766666666665555544
No 48
>PHA03332 membrane glycoprotein; Provisional
Probab=23.30 E-value=7.5e+02 Score=29.74 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcchhhhhH-hhhhhHHHHHHHHHH
Q 036806 31 MVSILGSFDYRLSALETAMRPTQIRTHSIR-KAHENIDKTLKSAEV 75 (567)
Q Consensus 31 m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~-~~~~nIe~~l~~~~~ 75 (567)
|...+.....|...++.++.-+-..-.+++ .+++||+.+-..++.
T Consensus 896 mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~ 941 (1328)
T PHA03332 896 MASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSD 941 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHH
Confidence 444444445555555554443333222222 346677766444433
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.29 E-value=9.7e+02 Score=29.31 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHH
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTL 70 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l 70 (567)
+++...+++...++-|.+..+-|....+.+++-.+|+..|+..|.-+..+..+-....++|+++.
T Consensus 1585 ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1585 AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45555566666666777777666666666666666666666665444333322223334444443
No 50
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=23.06 E-value=2.3e+02 Score=24.15 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=39.8
Q ss_pred hhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCCcccHHHHHHHHHHHHHHHHHhhcCC
Q 036806 40 YRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLRANIKFFSSNK 119 (567)
Q Consensus 40 ~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~ 119 (567)
.+|..|...| -..|..-+-||+++|.+++.+.+..-.. .++...| .-+++|.++ +
T Consensus 2 ~~L~~l~~~I------k~~L~~~~~Dv~kcL~~LdeL~~l~vT~----~mL~kn~-----e~V~Tlkkl----------R 56 (106)
T PF11467_consen 2 RRLQELHSEI------KSSLKVDNPDVKKCLKALDELKSLQVTS----LMLQKNP-----ECVETLKKL----------R 56 (106)
T ss_dssp HHHHHHHHHH------HHTCETTEE-HHHHHHHHHHHHTS---H----HHHTTTH-----HHHHHHHHH----------T
T ss_pred hhHHHHHHHH------HHHHcCCCCCHHHHHHHHHHHhccCCCH----HHHHhCH-----HHHHHHHHH----------H
Confidence 4555665555 3345555678999999999988775542 3444454 345555555 2
Q ss_pred CCCCchhHHhHHHHHHHH
Q 036806 120 SLKSSDGVLTQCNNLLAK 137 (567)
Q Consensus 120 ~~~~~~~~l~~~~~Ll~~ 137 (567)
.|+++..+.+.|+.++++
T Consensus 57 rY~gn~~Ir~KA~~lYnk 74 (106)
T PF11467_consen 57 RYKGNQQIRKKATELYNK 74 (106)
T ss_dssp T-TT-HHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHH
Confidence 344455555555555543
No 51
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=22.90 E-value=1.1e+03 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 036806 496 DWVQIQRRIVQQHANQY 512 (567)
Q Consensus 496 ~w~~~~~~~i~~~~~~Y 512 (567)
+|.+.+.+.|+.+++.-
T Consensus 360 eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 360 EWVQAIQDAIDKHKQCR 376 (623)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888777543
No 52
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=5e+02 Score=30.08 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred HHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhc
Q 036806 20 SLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKIL 91 (567)
Q Consensus 20 ~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~ 91 (567)
-|.+......++..-+++++.||+..-+...---.+-.+.+..+.||..++..+...+...+..++....+.
T Consensus 81 EL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s 152 (800)
T KOG2176|consen 81 ELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMS 152 (800)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666667777888888776665333333345567789999999998877666666555544433
No 53
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=22.61 E-value=7e+02 Score=24.06 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchh
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRK 85 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~ 85 (567)
-++.++..+..+.+++...-.--+++...+..|..-+..|...-. ...|.+.-.++-.+-..+..+......
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~--- 91 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQAD--- 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 466677777777777777777777888888888887777765421 123444444444444444444333221
Q ss_pred hhhhhccCCcccHHHHHHHHHHHHHHHH
Q 036806 86 AEAKILKGPHEDLESYLEAIDQLRANIK 113 (567)
Q Consensus 86 ~e~~i~~gp~~~l~~YL~av~~l~~a~~ 113 (567)
.+...+. .-|..|+..+.-+..++.
T Consensus 92 ~d~~~l~---e~L~eY~r~i~svk~~f~ 116 (224)
T cd07623 92 TDFYILA---ELLKDYIGLIGAIKDVFH 116 (224)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 2222222 237778877776666554
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.53 E-value=1.1e+03 Score=27.29 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 036806 4 PQAMGALRERAAFVRESLQKSQTITDNMVSILGSFDY 40 (567)
Q Consensus 4 ~~~~~~~~a~~~~l~~~L~ks~~lt~~m~~iL~~~d~ 40 (567)
++...+++++++.|+.-|..+++...++..-++.+++
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 4577899999999999999999999999998776665
No 55
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.45 E-value=6.4e+02 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhHH----HHHHHHHHHhhhhhhhhhhhhhc
Q 036806 12 ERAAFVRESLQKSQT----ITDNMVSILGSFDYRLSALETAM 49 (567)
Q Consensus 12 a~~~~l~~~L~ks~~----lt~~m~~iL~~~d~rL~~l~~~i 49 (567)
...+.++++|.++++ -...|..+..++|.++..|.+.+
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444455544433 33445556666677666666554
No 56
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=22.10 E-value=3.3e+02 Score=30.19 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=57.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhcccchhhhhhhc-cCC------cccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHH
Q 036806 60 RKAHENIDKTLKSAEVILAQFDLTRKAEAKIL-KGP------HEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCN 132 (567)
Q Consensus 60 ~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~-~gp------~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~ 132 (567)
+++|..||++|..+..=+..|+.. .|.+=- .++ ..||+.=+.-|.||++-|+-..+.+.+| ....|....
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i--~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIK-DK~~L~d~R 80 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEI--YEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIK-DKDSLLDNR 80 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHH--HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cHHHHHHHH
Confidence 467889999999888877777753 221111 111 1578888888889999898877666666 456777889
Q ss_pred HHHHHHHHHH
Q 036806 133 NLLAKAISKL 142 (567)
Q Consensus 133 ~Ll~~a~~~L 142 (567)
.|++.+|.+.
T Consensus 81 rlIE~~MErf 90 (575)
T KOG2150|consen 81 RLIEQRMERF 90 (575)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 57
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.96 E-value=5.2e+02 Score=22.41 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036806 100 SYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYS 154 (567)
Q Consensus 100 ~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s 154 (567)
+.=++...|.+-++|+.. .-..+..-..-++.-+..+++.++.++..+.
T Consensus 68 d~~e~~~~l~~r~E~ie~------~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 68 DKTKVEKELKERKELLEL------RSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred cHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556667777777762 2345666677888889999999999988754
No 58
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.94 E-value=6.8e+02 Score=26.82 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHH-----
Q 036806 6 AMGALRERAAFVRESLQKSQTITDNMVS-----ILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEV----- 75 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~ks~~lt~~m~~-----iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~----- 75 (567)
++..+...++.|.+-+++++.-...-.+ |=-++=.+...+|+.+ ..+....+|++..+..|+.
T Consensus 241 ~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~-------er~~~~l~~l~~vl~~Id~s~~nk 313 (439)
T KOG2911|consen 241 ARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDL-------ERKVSSLNNLETVLSQIDNSQTNK 313 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHhhcccH
Confidence 4556666667777777766554442221 1111222222222222 2233344555555555544
Q ss_pred -HHHhcccchhhhhhhcc-C-CcccHHHHHHHHHHHH----HHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 036806 76 -ILAQFDLTRKAEAKILK-G-PHEDLESYLEAIDQLR----ANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQ 148 (567)
Q Consensus 76 -v~~~~~~~~~~e~~i~~-g-p~~~l~~YL~av~~l~----~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~ 148 (567)
|+.-|....+.=..|.. | ..+.+++||+-|.... +.-+-+.+ .+... .+..-..||+|...
T Consensus 314 vvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~-~~~~~-----------~d~~de~lEkEL~~ 381 (439)
T KOG2911|consen 314 VVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS-YNVNN-----------IDFEDEDLEKELED 381 (439)
T ss_pred HHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc-CCCCC-----------CccchHHHHHHHHH
Confidence 44444444333333332 3 2244667766655332 22222221 11110 12234678999998
Q ss_pred HHHhcC
Q 036806 149 LLKNYS 154 (567)
Q Consensus 149 lL~~~s 154 (567)
|.....
T Consensus 382 L~~D~~ 387 (439)
T KOG2911|consen 382 LEADEK 387 (439)
T ss_pred HHhccc
Confidence 887643
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.11 E-value=2.4e+02 Score=27.77 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=28.8
Q ss_pred hhhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036806 86 AEAKILKGPHEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKNYSKP 156 (567)
Q Consensus 86 ~e~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~~s~~ 156 (567)
++..|..+.+...+...+.|++|.+.++.=. -...+++..+++ .-..|.+|-+-+..+...
T Consensus 114 L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~d--------v~~~ek~r~vle--a~~~E~~yg~~i~~~~~~ 174 (251)
T PF11932_consen 114 LEQFVELDLPFLLEERQERLARLRAMLDDAD--------VSLAEKFRRVLE--AYQIEMEYGRTIEVYQGT 174 (251)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhhccC--------CCHHHHHHHHHH--HHHHHHHhCCceeEEEEE
Confidence 3333444433445556666666655444321 122344444433 234566676655555433
Done!