Query 036806
Match_columns 567
No_of_seqs 170 out of 489
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 1.7E-85 5.9E-90 723.4 33.2 465 73-567 2-510 (571)
2 2b1e_A Exocyst complex compone 100.0 6.1E-80 2.1E-84 675.8 34.5 459 63-567 2-508 (564)
3 1zva_A E2 glycoprotein; membra 80.4 1.6 5.6E-05 32.9 3.7 59 11-69 13-72 (77)
4 3ci9_A Heat shock factor-bindi 66.0 13 0.00043 25.8 5.1 44 6-49 3-47 (48)
5 2d2s_A Exocyst complex compone 64.0 96 0.0033 29.0 18.6 99 209-326 91-189 (235)
6 1deq_A Fibrinogen (alpha chain 44.6 1.1E+02 0.0037 30.7 9.7 72 37-111 117-191 (390)
7 3ghg_A Fibrinogen alpha chain; 43.9 69 0.0023 33.5 8.5 69 37-112 114-189 (562)
8 3pf6_A Hypothetical protein PP 30.3 39 0.0013 23.5 2.8 30 396-432 31-60 (62)
9 3swh_A MUNC13-1, protein UNC-1 28.4 93 0.0032 31.0 6.5 108 375-485 20-133 (341)
10 2i2j_A Signaling peptide UA159 28.1 36 0.0012 19.4 1.9 18 546-563 5-22 (26)
11 2pco_A Latarcin-1, LTC-1; cont 27.5 33 0.0011 20.2 1.7 18 544-561 6-23 (26)
12 2ket_A Cathelicidin-6; antimic 24.9 41 0.0014 19.3 1.8 15 548-562 2-16 (27)
13 3thf_A Protein shroom; coiled- 23.2 1.7E+02 0.0058 26.3 6.4 44 8-51 46-98 (190)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=1.7e-85 Score=723.38 Aligned_cols=465 Identities=24% Similarity=0.406 Sum_probs=393.4
Q ss_pred HHHHHHhcccchhhhhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 036806 73 AEVILAQFDLTRKAEAKILKGPHEDLESYLEAIDQLRANIKFFSSNKSLKSSDGVLTQCNNLLAKAISKLEDEFRQLLKN 152 (567)
Q Consensus 73 ~~~v~~~~~~~~~~e~~i~~gp~~~l~~YL~av~~l~~a~~~l~~~~~~~~~~~~l~~~~~Ll~~a~~~Le~eF~~lL~~ 152 (567)
+|+|+++|+++++.|.+|+.||+.++..||+||++|+++++||..+++ .+..+.++++|+++||.+||+||++||.+
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~~---~s~~l~~~~~Ll~~a~~~Le~eF~~lL~~ 78 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSP---DSPELNKVKLLFERGKESLESEFRSLMTR 78 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999997654 34569999999999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 036806 153 YSKPVEPDRLFDCLPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQQMVLAGHQQQLFRIY 232 (567)
Q Consensus 153 ~s~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y 232 (567)
|+.|++|..+++.++...+. ++. +. ..+..+||+++++|+.||+||+.+||.++|+++|
T Consensus 79 ~~~~~~p~~ll~~~~~~~~~-----~~~-------------~~---~~~~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y 137 (571)
T 2pft_A 79 HSKVVSPVLLLDLISADDEL-----EVQ-------------ED---VVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVY 137 (571)
T ss_dssp HCCCCCHHHHHHHHHHTCCC-----C------------------------SSCHHHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred cCcCCChHHHHhcccccccc-----Ccc-------------cc---ccccCCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999998876544321100 000 00 1234699999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhcC------------------------CCCCChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 036806 233 RDTRASVLEQSIRKLG------------------------VERLSKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGER 288 (567)
Q Consensus 233 ~~~R~~~l~~~L~~L~------------------------~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~ 288 (567)
+++|+++|.++|..|+ .+..+..++++ +|+.++.+|++|++++.++++ |+++||
T Consensus 138 ~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~-l~~~Er 215 (571)
T 2pft_A 138 YQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK-LAQSEY 215 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999993 33333344433 799999999999999999888 799999
Q ss_pred HHhhhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH-hccCCh--hHHHHHhhHHH---HHHhcHHHHHHhhCcchhHH
Q 036806 289 KICDQILDGVHSLRDQCFAEVTANSVSMLLSFGEAIA-KSKRSP--EKLFVLLDMYE---IMRELQSEIQFLFGSKACME 362 (567)
Q Consensus 289 ~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~f~~~v~-~~~~~~--~klf~lLdm~e---~L~~l~p~~~~lf~~~~~~~ 362 (567)
+||++||+. ...+.||.+|+++++.+|++|+++|+ .++|+| +++|.+++||+ .|.++.|+++.+|.|+.+ .
T Consensus 216 ~L~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~g~~~-~ 292 (571)
T 2pft_A 216 RLLMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAA-S 292 (571)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTTTSCH-H
T ss_pred HHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHccCch-H
Confidence 999999986 35678999999999999999999997 477777 66666555554 588999999999999776 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-CCCccccchhHHHHHHHHHHHhcHHHHHHHHhccCCC------
Q 036806 363 MRESAFSLTKRLAQTAQETFGDFEEAVEKDA-TKTT-VFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFDTT------ 434 (567)
Q Consensus 363 ~~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~-~~~~-~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~~~~~------ 434 (567)
++.++.+++++|+++++++|.||.+.|++++ ++.+ |.||+|||+|+||||||+.|++|+++|..+|..+..+
T Consensus 293 ~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~~~~~~ 372 (571)
T 2pft_A 293 TKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSY 372 (571)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCcccccC
Confidence 7899999999999999999999999999996 5554 4599999999999999999999999999999865321
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHhhhhHHHHHHHhccccchhhhc---chHHHHHHHHHHHHH
Q 036806 435 --HPPESQLAAVTTRIVLALQNNLDGKSKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDVLG---DDWVQIQRRIVQQHA 509 (567)
Q Consensus 435 --~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~aL~~iFLlNN~~yI~~~v~~s~L~~~Lg---~~w~~~~~~~i~~~~ 509 (567)
+++.++|+.+|.++|++|+.|||.||+.|+|++|++||||||+|||++++++|+|..+|| ++|.++++.++++|+
T Consensus 373 ~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~~~i~~~~ 452 (571)
T 2pft_A 373 SSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQI 452 (571)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHHHHHHHHH
Confidence 123458999999999999999999999999999999999999999999999999999999 689999999999999
Q ss_pred HHHHHhchHHHHhhhccCCCCCC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHccCCC
Q 036806 510 NQYKRVSWAKILQCLTVQSAPGS-GGGDSGSISRGIVKDRFKTFNAQFEEIHQRQSQWT 567 (567)
Q Consensus 510 ~~Y~~~sW~~vl~~L~~~~~~~~-~~~~~~~~~r~~iKekfk~FN~~Fee~~~~Q~~w~ 567 (567)
+.| +++|++|++||.+++.+.. ++++.++++|+.+||||++||.+|||+|++|++|+
T Consensus 453 ~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~ 510 (571)
T 2pft_A 453 QTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWA 510 (571)
T ss_dssp HHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999 8899999999998764321 22345677899999999999999999999999996
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=6.1e-80 Score=675.83 Aligned_cols=459 Identities=17% Similarity=0.222 Sum_probs=378.7
Q ss_pred hhhHHHHHHHHHHHHHhcccchhhhhhhccCCc-ccHHHHHHHHHHHHHHHHHhhcCCCCC----CchhHHhHHHHHHHH
Q 036806 63 HENIDKTLKSAEVILAQFDLTRKAEAKILKGPH-EDLESYLEAIDQLRANIKFFSSNKSLK----SSDGVLTQCNNLLAK 137 (567)
Q Consensus 63 ~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp~-~~l~~YL~av~~l~~a~~~l~~~~~~~----~~~~~l~~~~~Ll~~ 137 (567)
|+|||++++++++|.++++.+++.|.+|+.||. .+++.||+||+||.+|++||+++++-. .+++++.++++|+++
T Consensus 2 ~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~ 81 (564)
T 2b1e_A 2 HMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKR 81 (564)
T ss_dssp ------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998 999999999999999999999865422 235689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCCCCCCCCcchhhhhhhhhccccCCCCCCCCCchHHHHHHHH
Q 036806 138 AISKLEDEFRQLLKNYSKPVEPDRLFDCLPNSLRPSSGPSGQEGDSKSHAEHQKSLQAAIYTPPTLIPPRVLPLLHDLAQ 217 (567)
Q Consensus 138 a~~~Le~eF~~lL~~~s~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~Ia~ 217 (567)
|+.+|+.||+.+|. +++|++|..++..-+ .+| .+|++++++|+.||+
T Consensus 82 g~~~L~~~F~~lL~-~s~p~~p~~~i~k~~-------------------------------p~p-~l~~~~l~~L~~Ia~ 128 (564)
T 2b1e_A 82 SEAQLRVYFISILN-SIKPFDPQINITKKM-------------------------------PFP-YYEDQQLGALSWILD 128 (564)
T ss_dssp HHHHHHHHHHHHHT-TSCCCCHHHHHHHTC-------------------------------CCC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCCHHHhhccCC-------------------------------CCC-CCCHHHHHHHHHHHH
Confidence 99999999999999 589999988652211 134 489999999999999
Q ss_pred HHHHcCChHHHHHHHHHhhHHHHHHHHHhcCCCCCChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 036806 218 QMVLAGHQQQLFRIYRDTRASVLEQSIRKLGVERLSKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGERKICDQILDG 297 (567)
Q Consensus 218 ~m~~~g~~~~~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~~L~~~vf~~ 297 (567)
||+.+|+.++|+++|+++|+++|.++|..|.....+....++++|+.++.+|..|+.++. .++.+|+.||++||+.
T Consensus 129 ~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~----~l~~~E~~L~~~vf~~ 204 (564)
T 2b1e_A 129 YFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALL----GFIANEKSLVDDLYSQ 204 (564)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHH----HHHHHHHHHHHHHSCT
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHH----HHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998765555566678999999999999999983 5789999999999998
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHH-HhccCCh-hHHHHHhhHHHHHHhcHHHHHHhhCcchhHHHHHHHHHHHHHHH
Q 036806 298 VHSLRDQCFAEVTANSVSMLLSFGEAI-AKSKRSP-EKLFVLLDMYEIMRELQSEIQFLFGSKACMEMRESAFSLTKRLA 375 (567)
Q Consensus 298 ~~~~~~~~f~~i~~~~~~~ll~f~~~v-~~~~~~~-~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~~~l~~L~ 375 (567)
++..++.||..|+.+++..+...++.. +.++++| +++|.+|+||++|.++. .+|.|+.+.. ..++.+++++|+
T Consensus 205 ~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~-~~~~~~~l~~L~ 279 (564)
T 2b1e_A 205 YTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVK----KSLRGKELQN-YNLLQDCTQEVR 279 (564)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTT-HHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHHH----HHHcccccch-HHHHHHHHHHHH
Confidence 666788999999999998444433322 2357888 89999999999997654 7888866654 389999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC--CCCCCccccchhHHHHHHHHHHHhcHHHHHHHHhc-----cCC---------------
Q 036806 376 QTAQETFGDFEEAVEKDATK--TTVFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEE-----FDT--------------- 433 (567)
Q Consensus 376 ~~~~~~~~ef~~~I~~~~~~--~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~-----~~~--------------- 433 (567)
++++++|.||.+.|+.++++ .+|+||||||+|+||||||+.|++|+++|..+++. |.+
T Consensus 280 ~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (564)
T 2b1e_A 280 QVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEAL 359 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGGSCCCC---
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccccccccccccccc
Confidence 99999999999999988654 34789999999999999999999999999999864 322
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHHhh------------------hccCCChhhhhHHhhhhHHHHHHHhccccchhhhc
Q 036806 434 -THPPESQLAAVTTRIVLALQNNLDGK------------------SKQYKDPALTQLFLMNNIHYIVRSVRRSEAKDVLG 494 (567)
Q Consensus 434 -~~~~~~~l~~~i~~ii~~L~~~Le~k------------------sk~y~d~aL~~iFLlNN~~yI~~~v~~s~L~~~Lg 494 (567)
+.++.++|++||.++|++|+.|||+| |+.|+|++++ +|||||+|||+++|++|+|..+||
T Consensus 360 ~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~SeL~~lLg 438 (564)
T 2b1e_A 360 NWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKSELNLMLA 438 (564)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTSTHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhhhhHhHhc
Confidence 11223579999999999999999999 5779998885 699999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhchHHHHhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHccCCC
Q 036806 495 DDWVQIQRRIVQQHANQYKRVSWAKILQCLTVQSAPGSGGGDSGSISRGIVKDRFKTFNAQFEEIHQRQSQWT 567 (567)
Q Consensus 495 ~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~Q~~w~ 567 (567)
++|.++|++.+++| +.|++++|++|++||.+++...++ ++ ++++|+.+||||++||++|||+|++|++|+
T Consensus 439 ~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~-~k-s~~~k~~iKe~fk~FN~~Fee~~~~q~~w~ 508 (564)
T 2b1e_A 439 GEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSS-GK-KSKDKEQIKEKFRKFNEGFEDLVSKTKQYK 508 (564)
T ss_dssp THHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-SS-CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCC-CC-ccccHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999 589999999999999987644322 22 568899999999999999999999999996
No 3
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=80.40 E-value=1.6 Score=32.86 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHH
Q 036806 11 RERAAFVRESLQKS-QTITDNMVSILGSFDYRLSALETAMRPTQIRTHSIRKAHENIDKT 69 (567)
Q Consensus 11 ~a~~~~l~~~L~ks-~~lt~~m~~iL~~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~ 69 (567)
.+.+..|...|.+. ..++..|..|.+++|+||+.|...+.-.|.+....+++-.+|+..
T Consensus 13 ~~aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLnafv~~~~~ev~~~r~lA~~iNEc 72 (77)
T 1zva_A 13 AQALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINASVVNIQKEIDRLNEVAKNLNES 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667666 778888999999999999999888765555554544444445443
No 4
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=65.95 E-value=13 Score=25.82 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhhhhhhhc
Q 036806 6 AMGALRERAAFVRESLQ-KSQTITDNMVSILGSFDYRLSALETAM 49 (567)
Q Consensus 6 ~~~~~~a~~~~l~~~L~-ks~~lt~~m~~iL~~~d~rL~~l~~~i 49 (567)
..+.+.+-++-|-+.|. |-.++++.|.+.+..+..|+-.||++|
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 34456666666655554 558888888888888888888888776
No 5
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.97 E-value=96 Score=29.04 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhHHHHHHHHHhcCCCCCChHHhhccchHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 036806 209 LPLLHDLAQQMVLAGHQQQLFRIYRDTRASVLEQSIRKLGVERLSKDDVQKMPWEVLEAKIGSWIHHMRISVKLLFAGER 288 (567)
Q Consensus 209 ~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~~L~~L~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~v~~l~~~E~ 288 (567)
...++....+|.+.|.....+..|=+.|+..+...+..++.. +....|+..+..++=..+..=.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~----------------gd~~~Yi~~Ls~i~Fs~I~~t~ 154 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV----------------DNPTNYLTQLAVIRFQTIKKTV 154 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C----------------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999877421 1234455555432211111111
Q ss_pred HHhhhcCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036806 289 KICDQILDGVHSLRDQCFAEVTANSVSMLLSFGEAIAK 326 (567)
Q Consensus 289 ~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~f~~~v~~ 326 (567)
+-...+|+... ..|+..++.=+...+-.|+..+.+
T Consensus 155 ~~f~~~F~~~~---~~~~S~lV~Wa~~eve~f~~l~~r 189 (235)
T 2d2s_A 155 EDFQDIFKELG---AKISSILVDWCSDEVDNHFKLIDK 189 (235)
T ss_dssp HHHHHHSTTCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence 22235887521 257777888888888888877764
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.59 E-value=1.1e+02 Score=30.70 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhcc---CCcccHHHHHHHHHHHHHH
Q 036806 37 SFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILK---GPHEDLESYLEAIDQLRAN 111 (567)
Q Consensus 37 ~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~---gp~~~l~~YL~av~~l~~a 111 (567)
.++.|..-|.+.| ..+..+++.++.||+..+..+.++-..-+....-+..--. .=..|++.|-+-.++|..+
T Consensus 117 eLe~~i~~lk~~V---~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 117 DLRSRIEILRRKV---IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 3344444444433 3344466777777776655544433322322211111000 0125889999999988765
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.91 E-value=69 Score=33.52 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhcCCCcchhhhhHhhhhhHHHHHHHHHHHHHhcccchhhhhhhccCC-------cccHHHHHHHHHHHH
Q 036806 37 SFDYRLSALETAMRPTQIRTHSIRKAHENIDKTLKSAEVILAQFDLTRKAEAKILKGP-------HEDLESYLEAIDQLR 109 (567)
Q Consensus 37 ~~d~rL~~l~~~i~Pi~~~t~~L~~~~~nIe~~l~~~~~v~~~~~~~~~~e~~i~~gp-------~~~l~~YL~av~~l~ 109 (567)
.++.|...|+..| ..+.++++.++.||+..+..|.++-.--+.--+.+ +|| ..|++.|-+-=++|.
T Consensus 114 ELRRrIqyLKekV---dnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC----KgsCsr~~~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 114 DLRSRIEVLKRKV---IEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC----RGSCSRALAREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG----GGTBSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccchheeecchHHHHHHHHHHH
Confidence 4445555555544 44556677777777777666555433333211111 244 268999988888887
Q ss_pred HHH
Q 036806 110 ANI 112 (567)
Q Consensus 110 ~a~ 112 (567)
+++
T Consensus 187 Qv~ 189 (562)
T 3ghg_A 187 QVI 189 (562)
T ss_dssp HHH
T ss_pred HHh
Confidence 755
No 8
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=30.26 E-value=39 Score=23.53 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCCCCccccchhHHHHHHHHHHHhcHHHHHHHHhccC
Q 036806 396 TTVFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFD 432 (567)
Q Consensus 396 ~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~~~ 432 (567)
...|+|+.|. |++.|+.|.++|-.+..+|.
T Consensus 31 ~l~pggshhd-------fmra~mgyhntl~~~~~e~~ 60 (62)
T 3pf6_A 31 LLFPGGTHHD-------FMRALMGYHNTLVKVMEEQC 60 (62)
T ss_dssp HHSCSSCHHH-------HHHHHHHHHHHHHHHHHHCC
T ss_pred HhCCCCchHH-------HHHHHHhhhHHHHHHHHhhc
Confidence 3567888885 66777777888777777664
No 9
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=28.39 E-value=93 Score=30.96 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCccccchhHHHHHHHHHHHhcHHHHHHHHhccCCCCCC---CChHHHHHHHHHHH
Q 036806 375 AQTAQETFGDFEEAVEKDATKTTVFDGTVHPLTSYVINYVKFLFDYRSTLKLLFEEFDTTHPP---ESQLAAVTTRIVLA 451 (567)
Q Consensus 375 ~~~~~~~~~ef~~~I~~~~~~~~~~dg~Vh~lT~~vm~yl~~L~~y~~~l~~ll~~~~~~~~~---~~~l~~~i~~ii~~ 451 (567)
..+..++..-+..+|+.|.-....+.+.-..-.+.|+.-...+....+.+.++ +|.+.... .+.|+.-|..++..
T Consensus 20 ~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~~~~~ 97 (341)
T 3swh_A 20 DENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKL--ECPDPQIVGHYMRRFAKTISNVLLQ 97 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566665543222222222244556666666665555554443 35332100 01123333333334
Q ss_pred HHHHHHhhhccCC-Ch--hhhhHHhhhhHHHHHHHhc
Q 036806 452 LQNNLDGKSKQYK-DP--ALTQLFLMNNIHYIVRSVR 485 (567)
Q Consensus 452 L~~~Le~ksk~y~-d~--aL~~iFLlNN~~yI~~~v~ 485 (567)
....++.|-..|. +. ..-+ -+|||+.|+...+.
T Consensus 98 Y~~~l~~~~~~~~~~e~~~~~C-v~lNNie~lR~~L~ 133 (341)
T 3swh_A 98 YADIVSKDFASYCSKEKEKVPC-ILMNNTQQLRVQLE 133 (341)
T ss_dssp HHHHHHHHHHHHCCTTSCHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhcccchh-hhcccHHHHHHHHH
Confidence 4445555554443 22 2233 47899999999875
No 10
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=28.07 E-value=36 Score=19.36 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 036806 546 KDRFKTFNAQFEEIHQRQ 563 (567)
Q Consensus 546 Kekfk~FN~~Fee~~~~Q 563 (567)
---|+.||..|..+.-+.
T Consensus 5 stffrlfnrsftqalgk~ 22 (26)
T 2i2j_A 5 STFFRLFNRSFTQALGKX 22 (26)
T ss_pred HHHHHHHhHHHHHHhccc
Confidence 345899999998876543
No 11
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=27.50 E-value=33 Score=20.22 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036806 544 IVKDRFKTFNAQFEEIHQ 561 (567)
Q Consensus 544 ~iKekfk~FN~~Fee~~~ 561 (567)
.+|++|++|-.+|-+-..
T Consensus 6 k~keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 6 MWRRKLKKLRNALKKKLK 23 (26)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 368999999999876543
No 12
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=24.95 E-value=41 Score=19.28 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 036806 548 RFKTFNAQFEEIHQR 562 (567)
Q Consensus 548 kfk~FN~~Fee~~~~ 562 (567)
||++|-..|..+++.
T Consensus 2 rfkrfrkkfkklfkk 16 (27)
T 2ket_A 2 RFKRFRKKFKKLFKK 16 (27)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 578888888887765
No 13
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.25 E-value=1.7e+02 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHH---------HHHHHHHhhhhhhhhhhhhhcCC
Q 036806 8 GALRERAAFVRESLQKSQTIT---------DNMVSILGSFDYRLSALETAMRP 51 (567)
Q Consensus 8 ~~~~a~~~~l~~~L~ks~~lt---------~~m~~iL~~~d~rL~~l~~~i~P 51 (567)
+.+-++++.+.+.+-+.++.. +.+.+.|-++..||.+++.++.-
T Consensus 46 ~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~ 98 (190)
T 3thf_A 46 DRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLET 98 (190)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcc
Confidence 344455555555544444432 34456788999999999988743
Done!