Query 036810
Match_columns 163
No_of_seqs 50 out of 52
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05755 REF: Rubber elongatio 100.0 1.5E-63 3.3E-68 415.4 11.2 138 1-144 78-215 (216)
2 PF12146 Hydrolase_4: Putative 64.7 7.1 0.00015 27.4 2.6 24 105-128 26-49 (79)
3 PF05755 REF: Rubber elongatio 50.8 14 0.0003 32.0 2.6 64 3-71 69-137 (216)
4 COG2766 PrkA Putative Ser prot 40.3 33 0.00072 33.9 3.6 56 68-126 578-633 (649)
5 PF01320 Colicin_Pyocin: Colic 39.6 17 0.00037 27.1 1.3 21 74-94 64-84 (85)
6 PF03618 Kinase-PPPase: Kinase 30.4 29 0.00062 30.3 1.4 20 117-137 156-175 (255)
7 COG2822 Predicted periplasmic 30.1 37 0.00081 31.4 2.1 32 41-80 161-192 (376)
8 PF15469 Sec5: Exocyst complex 29.8 1.9E+02 0.0041 22.6 5.8 39 53-91 111-152 (182)
9 COG3136 GlpM Uncharacterized m 29.4 36 0.00078 26.8 1.7 22 116-137 18-40 (111)
10 PRK05339 PEP synthetase regula 27.9 32 0.0007 30.3 1.3 20 117-137 162-181 (269)
11 COG2267 PldB Lysophospholipase 24.4 68 0.0015 27.4 2.6 25 104-128 43-67 (298)
12 COG2074 2-phosphoglycerate kin 23.8 1.9E+02 0.0042 26.3 5.4 75 8-91 8-87 (299)
13 PF03720 UDPG_MGDP_dh_C: UDP-g 22.4 1.1E+02 0.0023 22.2 3.0 29 113-141 21-49 (106)
No 1
>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].
Probab=100.00 E-value=1.5e-63 Score=415.45 Aligned_cols=138 Identities=70% Similarity=1.032 Sum_probs=136.4
Q ss_pred CccchhccccCCCccchhhhHHHHHHHhhchHHHHHHHHHHHhhcchhhhhhhhhhhhhccchhHHHHhhhhhhHHHHHH
Q 036810 1 VDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYA 80 (163)
Q Consensus 1 Vdesv~~lD~hvPp~vKqvs~QA~~~aq~ap~~Ar~v~sEv~~~Gv~~ta~~~Ak~~y~k~ep~Ak~lY~kYEp~Ae~~a 80 (163)
|||++++||+|+||++||+|+||++++|+|||+||++++|+|++|++++++++||++|+| +||++|||+||+|+
T Consensus 78 VD~~~~~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k------~ly~~yEp~Ae~~a 151 (216)
T PF05755_consen 78 VDESVTKLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAK------DLYTKYEPVAEQYA 151 (216)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHH------HHHHHhhHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred HHHHHHhcCCCChhhhhhhhccchhhhhHHhhHHHHHHhhcCCeeeecccccchHHHHHhhccC
Q 036810 81 VSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNG 144 (163)
Q Consensus 81 v~aW~~LN~lPlfpqVa~~~vPtAA~~sEKYN~~V~~~a~kGY~va~YLPLVP~EkIaKvf~~~ 144 (163)
+++|++|||||+||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus 152 v~aW~~Ln~lP~~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~ 215 (216)
T PF05755_consen 152 VSAWRKLNQLPLFPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE 215 (216)
T ss_pred HHHHHHhccCCCchhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 2
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=64.67 E-value=7.1 Score=27.43 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred hhhhHHhhHHHHHHhhcCCeeeec
Q 036810 105 AYCSEKYNQTVVSAADKGYKVSSY 128 (163)
Q Consensus 105 A~~sEKYN~~V~~~a~kGY~va~Y 128 (163)
.=-|++|-++...|++.||.|.+|
T Consensus 26 ~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 26 GEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEE
Confidence 445789999999999999999875
No 3
>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].
Probab=50.85 E-value=14 Score=31.98 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=40.7
Q ss_pred cchhccccCCCccchhhhHHHHHHHhhchHHHHHHHHHHHhhcchhhhhhhhhh-----hhhccchhHHHHhhh
Q 036810 3 ESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKS-----VYTKYEPAAKELYSK 71 (163)
Q Consensus 3 esv~~lD~hvPp~vKqvs~QA~~~aq~ap~~Ar~v~sEv~~~Gv~~ta~~~Ak~-----~y~k~ep~Ak~lY~k 71 (163)
|.+.-+|+.|-..+-+.-..+-.++++++.-|++++..+... |+.++.. +++-.-..||.+|+|
T Consensus 69 ~vL~fvDrKVD~~~~~~d~~vPp~vKqvs~Qa~~~~~~ape~-----ar~vvsevq~~Gv~~aa~~~A~~v~~k 137 (216)
T PF05755_consen 69 EVLKFVDRKVDESVTKLDRHVPPVVKQVSSQAYSAAQKAPEK-----AREVVSEVQRAGVVEAAKGIAKTVYAK 137 (216)
T ss_pred HHHHHHhhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHhccHHHHHHHHhhhHHHH
Confidence 445556777776676766777777777777777777666552 3333332 444555667778877
No 4
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=40.27 E-value=33 Score=33.92 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=40.3
Q ss_pred HhhhhhhHHHHHHHHHHHHhcCCCChhhhhhhhccchhhhhHHhhHHHHHHhhcCCeee
Q 036810 68 LYSKYEPKAEQYAVSAWRKLNQMPLFPQVAQVVVPTAAYCSEKYNQTVVSAADKGYKVS 126 (163)
Q Consensus 68 lY~kYEp~Ae~~av~aW~~LN~lPlfpqVa~~~vPtAA~~sEKYN~~V~~~a~kGY~va 126 (163)
-|+-||++=+-..=+.|..+..+=.|-......=|.-- +|+|+.|..|.++||+=.
T Consensus 578 d~~s~e~LReviekklf~dvkdl~pv~s~~~~~D~~e~---kk~ne~V~rlverGYt~~ 633 (649)
T COG2766 578 DWTSYEKLREVIEKKLFSDVKDLLPVISFTAKADPDEQ---KKHNDFVARLVERGYTRK 633 (649)
T ss_pred CccccHHHHHHHHHhhhHhHhhhccccCccccCChhHH---HHHHHHHHHHHHcCccHH
Confidence 47888888888888899888776544443332222221 899999999999999743
No 5
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=39.65 E-value=17 Score=27.11 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhcCCCChh
Q 036810 74 PKAEQYAVSAWRKLNQMPLFP 94 (163)
Q Consensus 74 p~Ae~~av~aW~~LN~lPlfp 94 (163)
|----.-|+-||+-|.+|+|=
T Consensus 64 PegIv~~vKeWRa~nG~pgFK 84 (85)
T PF01320_consen 64 PEGIVKEVKEWRASNGKPGFK 84 (85)
T ss_dssp HHHHHHHHHHHHHHTT---SB
T ss_pred HHHHHHHHHHHHHHcCCCccC
Confidence 433346789999999999983
No 6
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=30.41 E-value=29 Score=30.29 Aligned_cols=20 Identities=50% Similarity=0.866 Sum_probs=15.8
Q ss_pred HHhhcCCeeeecccccchHHH
Q 036810 117 SAADKGYKVSSYLPLVPTERI 137 (163)
Q Consensus 117 ~~a~kGY~va~YLPLVP~EkI 137 (163)
+||.+||+++. +||||=-.+
T Consensus 156 YLA~~G~KvAN-~PLvpe~~l 175 (255)
T PF03618_consen 156 YLANKGYKVAN-VPLVPEVPL 175 (255)
T ss_pred HHHhcCcceee-cCcCCCCCC
Confidence 67889999997 599985443
No 7
>COG2822 Predicted periplasmic lipoprotein involved in iron transport [Inorganic ion transport and metabolism]
Probab=30.15 E-value=37 Score=31.44 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=24.0
Q ss_pred HHhhcchhhhhhhhhhhhhccchhHHHHhhhhhhHHHHHH
Q 036810 41 VKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYA 80 (163)
Q Consensus 41 v~~~Gv~~ta~~~Ak~~y~k~ep~Ak~lY~kYEp~Ae~~a 80 (163)
+-++|=.+ -||++| +..|..|.|-||+||-.+
T Consensus 161 AVkagDie----kAKalY----a~~R~~YERiEPIAE~f~ 192 (376)
T COG2822 161 AVKAGDIE----KAKALY----AKTRVHYERIEPIAELFS 192 (376)
T ss_pred HHhcCcHH----HHHhcc----cchhhhhHhcchHHHHhc
Confidence 33445444 789999 678999999999998643
No 8
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.75 E-value=1.9e+02 Score=22.64 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=32.3
Q ss_pred hhhhhhhccc---hhHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 036810 53 MAKSVYTKYE---PAAKELYSKYEPKAEQYAVSAWRKLNQMP 91 (163)
Q Consensus 53 ~Ak~~y~k~e---p~Ak~lY~kYEp~Ae~~av~aW~~LN~lP 91 (163)
=||++|.++. +..+..+.+-|.+.++..-.+|++|...|
T Consensus 111 kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 111 KAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4667777763 56677888889999999999999999998
No 9
>COG3136 GlpM Uncharacterized membrane protein required for alginate biosynthesis [General function prediction only]
Probab=29.38 E-value=36 Score=26.85 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=17.5
Q ss_pred HHHhh-cCCeeeecccccchHHH
Q 036810 116 VSAAD-KGYKVSSYLPLVPTERI 137 (163)
Q Consensus 116 ~~~a~-kGY~va~YLPLVP~EkI 137 (163)
.-++. |||-++|-+||.||=-.
T Consensus 18 ~~lSktr~yyiaGliPLfPTFAl 40 (111)
T COG3136 18 ALLSKTRNYYIAGLIPLFPTFAL 40 (111)
T ss_pred HHHHhcccceecccccccchHHH
Confidence 33455 99999999999999654
No 10
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=27.90 E-value=32 Score=30.26 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=15.9
Q ss_pred HHhhcCCeeeecccccchHHH
Q 036810 117 SAADKGYKVSSYLPLVPTERI 137 (163)
Q Consensus 117 ~~a~kGY~va~YLPLVP~EkI 137 (163)
+||.+||+++. +||||=-.+
T Consensus 162 YLA~~G~KvAN-~PLvpe~~l 181 (269)
T PRK05339 162 YLANKGIKAAN-YPLVPEVPL 181 (269)
T ss_pred HHHccCCceEe-eCCCCCCCC
Confidence 67889999998 599986444
No 11
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=24.44 E-value=68 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred hhhhhHHhhHHHHHHhhcCCeeeec
Q 036810 104 AAYCSEKYNQTVVSAADKGYKVSSY 128 (163)
Q Consensus 104 AA~~sEKYN~~V~~~a~kGY~va~Y 128 (163)
..=.++||.+++..+..+||.|..+
T Consensus 43 ~~Eh~~ry~~la~~l~~~G~~V~~~ 67 (298)
T COG2267 43 LGEHSGRYEELADDLAARGFDVYAL 67 (298)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3446899999999999999999763
No 12
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=1.9e+02 Score=26.30 Aligned_cols=75 Identities=29% Similarity=0.403 Sum_probs=51.5
Q ss_pred cccCCCccchhhhHHHHHHHhhchHHHHHHHHHHHh----hcchhhh-hhhhhhhhhccchhHHHHhhhhhhHHHHHHHH
Q 036810 8 LDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKT----AGVAGTA-SGMAKSVYTKYEPAAKELYSKYEPKAEQYAVS 82 (163)
Q Consensus 8 lD~hvPp~vKqvs~QA~~~aq~ap~~Ar~v~sEv~~----~Gv~~ta-~~~Ak~~y~k~ep~Ak~lY~kYEp~Ae~~av~ 82 (163)
=|..-=|+=|-+-.|-+..|--.|+.|+++|.+.|+ .|..--. ..+.+ +| .+-+=..++-+|+.| .
T Consensus 8 g~~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~-~~------~~l~~k~~~e~a~rY--~ 78 (299)
T COG2074 8 GDKYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIRE-VY------QKLLEKGDPEVAKRY--L 78 (299)
T ss_pred CCcccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCCCeEeeHHHHHH-HH------HHHHHhcCHHHHHHH--H
Confidence 344455788888999999999999999999998876 4543211 12444 32 222334566677776 5
Q ss_pred HHHHhcCCC
Q 036810 83 AWRKLNQMP 91 (163)
Q Consensus 83 aW~~LN~lP 91 (163)
+||...+.+
T Consensus 79 lwR~ir~~~ 87 (299)
T COG2074 79 LWRRIRKMK 87 (299)
T ss_pred HHHHHhccC
Confidence 799998875
No 13
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=22.43 E-value=1.1e+02 Score=22.19 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCeeeecccccchHHHHHhh
Q 036810 113 QTVVSAADKGYKVSSYLPLVPTERIAKVF 141 (163)
Q Consensus 113 ~~V~~~a~kGY~va~YLPLVP~EkIaKvf 141 (163)
.++..+.++|+.|..|=|.++-+.+...+
T Consensus 21 ~l~~~L~~~g~~V~~~DP~v~~~~~~~~~ 49 (106)
T PF03720_consen 21 ELIEELKERGAEVSVYDPYVDEEEIKELG 49 (106)
T ss_dssp HHHHHHHHTT-EEEEE-TTSHHHHHHHHC
T ss_pred HHHHHHHHCCCEEEEECCccChHHHHhhC
Confidence 46788999999999999999999998753
Done!