Query 036810
Match_columns 163
No_of_seqs 50 out of 52
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxg_A Colicin E8 immunity pro 48.4 7.8 0.00027 27.7 1.7 16 79-94 68-83 (85)
2 3u43_A Colicin-E2 immunity pro 39.5 13 0.00043 27.2 1.7 22 73-94 63-84 (94)
3 1fr2_A Colicin E9 immunity pro 34.5 17 0.00059 25.9 1.7 16 79-94 69-84 (86)
4 1unk_A Colicin E7; immunity pr 33.7 18 0.00062 26.1 1.7 17 78-94 69-85 (87)
5 2k0d_X IMME7, colicin-E7 immun 22.7 32 0.0011 25.6 1.3 16 79-94 84-99 (101)
6 2yum_A ZZZ3 protein, zinc fing 19.0 54 0.0019 21.4 1.8 34 96-130 39-74 (75)
7 2b7t_A Double-stranded RNA-spe 15.0 1E+02 0.0036 19.9 2.4 21 71-91 52-73 (73)
8 2hzl_A Trap-T family sorbitol/ 13.1 1.8E+02 0.0063 23.5 3.9 54 38-93 288-353 (365)
9 2cwb_A Chimera of immunoglobul 12.3 76 0.0026 23.4 1.2 16 108-123 63-78 (108)
10 1vsr_A Protein (VSR endonuclea 12.1 1.6E+02 0.0055 22.2 3.0 42 104-145 63-122 (136)
No 1
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=48.38 E-value=7.8 Score=27.67 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCChh
Q 036810 79 YAVSAWRKLNQMPLFP 94 (163)
Q Consensus 79 ~av~aW~~LN~lPlfp 94 (163)
.-|+.||.-|.+|.|=
T Consensus 68 ~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 68 KEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHcCCcccC
Confidence 6789999999999984
No 2
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=39.53 E-value=13 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHhcCCCChh
Q 036810 73 EPKAEQYAVSAWRKLNQMPLFP 94 (163)
Q Consensus 73 Ep~Ae~~av~aW~~LN~lPlfp 94 (163)
.|----.-|+.||.-|.+|.|=
T Consensus 63 SPEgIv~~IKeWRa~nG~pgFK 84 (94)
T 3u43_A 63 SPEGIVKEIKEWRAANGKSGFK 84 (94)
T ss_dssp SHHHHHHHHHHHHHHTTCCCCB
T ss_pred CHHHHHHHHHHHHHHcCCccch
Confidence 3444457799999999999994
No 3
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=34.52 E-value=17 Score=25.91 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCChh
Q 036810 79 YAVSAWRKLNQMPLFP 94 (163)
Q Consensus 79 ~av~aW~~LN~lPlfp 94 (163)
.-|+.||.-|.+|.|=
T Consensus 69 ~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 69 NTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHcCCcccC
Confidence 5689999999999984
No 4
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=33.68 E-value=18 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCChh
Q 036810 78 QYAVSAWRKLNQMPLFP 94 (163)
Q Consensus 78 ~~av~aW~~LN~lPlfp 94 (163)
-.-|+-||.-|.+|.|=
T Consensus 69 v~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 69 VKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCCcccC
Confidence 36789999999999984
No 5
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=22.75 E-value=32 Score=25.61 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCChh
Q 036810 79 YAVSAWRKLNQMPLFP 94 (163)
Q Consensus 79 ~av~aW~~LN~lPlfp 94 (163)
.-|+-||.-|.+|.|=
T Consensus 84 k~IKeWRa~nGkPgFK 99 (101)
T 2k0d_X 84 KEIKEWRAANGKPGFK 99 (101)
T ss_dssp HHHHHHHHHHTCCCCB
T ss_pred HHHHHHHHHcCCcccC
Confidence 5689999999999994
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.01 E-value=54 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.5
Q ss_pred hhhhhcc--chhhhhHHhhHHHHHHhhcCCeeeeccc
Q 036810 96 VAQVVVP--TAAYCSEKYNQTVVSAADKGYKVSSYLP 130 (163)
Q Consensus 96 Va~~~vP--tAA~~sEKYN~~V~~~a~kGY~va~YLP 130 (163)
+|.. +| |.--|-++||.....+..+|..+-++.|
T Consensus 39 IA~~-~~~Rt~~qcr~r~~~~l~~~~k~g~~~pg~~~ 74 (75)
T 2yum_A 39 IADE-LGNRTAKQVASQVQKYFIKLTKAGIPVSGPSS 74 (75)
T ss_dssp HHHH-HSSSCHHHHHHHHHHHHGGGSTTCSCCCCSCC
T ss_pred HHHH-hCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4444 45 7889999998888889999999888876
No 7
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=14.97 E-value=1e+02 Score=19.92 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=15.9
Q ss_pred hhhhHHHHHHH-HHHHHhcCCC
Q 036810 71 KYEPKAEQYAV-SAWRKLNQMP 91 (163)
Q Consensus 71 kYEp~Ae~~av-~aW~~LN~lP 91 (163)
+.+-.||+.|. .+|..|.+||
T Consensus 52 ~SKK~Aeq~AA~~al~~L~~~p 73 (73)
T 2b7t_A 52 PTKKKAKLHAAEKALRSFVQFP 73 (73)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCC
Confidence 44566887765 5899999987
No 8
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=13.11 E-value=1.8e+02 Score=23.50 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=34.0
Q ss_pred HHHHHhhcch---------hhhhhhhhhhhhccc---hhHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Q 036810 38 ASEVKTAGVA---------GTASGMAKSVYTKYE---PAAKELYSKYEPKAEQYAVSAWRKLNQMPLF 93 (163)
Q Consensus 38 ~sEv~~~Gv~---------~ta~~~Ak~~y~k~e---p~Ak~lY~kYEp~Ae~~av~aW~~LN~lPlf 93 (163)
..+.+..|+. +..+..++.+|.++. |..+++|.++.-..+.+ ..|..|..+..+
T Consensus 288 ~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~ 353 (365)
T 2hzl_A 288 IKSLVAQGTQLRPFSPEILQACFEAANEVYAEMEASNPAFKKIWDSIKAFRSEH--YTWAQIAEYNYD 353 (365)
T ss_dssp HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHTTTHHHHHH
T ss_pred HHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hHHHhhhhhhHH
Confidence 3444567742 234456777887775 45778888887766554 468776655444
No 9
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=12.32 E-value=76 Score=23.40 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=13.8
Q ss_pred hHHhhHHHHHHhhcCC
Q 036810 108 SEKYNQTVVSAADKGY 123 (163)
Q Consensus 108 sEKYN~~V~~~a~kGY 123 (163)
.++|..-|..|.++|+
T Consensus 63 e~~~~~qL~qL~eMGF 78 (108)
T 2cwb_A 63 GSQWQPQLQQLRDMGI 78 (108)
T ss_dssp CCTTHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHHcCC
Confidence 3688889999999996
No 10
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=12.07 E-value=1.6e+02 Score=22.16 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.0
Q ss_pred hhhhhHHhhHHHH-------HHhhcCCeeeec--------c---cccchHHHHHhhccCc
Q 036810 104 AAYCSEKYNQTVV-------SAADKGYKVSSY--------L---PLVPTERIAKVFSNGV 145 (163)
Q Consensus 104 AA~~sEKYN~~V~-------~~a~kGY~va~Y--------L---PLVP~EkIaKvf~~~~ 145 (163)
..||.+|+..-+. .+.+.|++|-.+ + |--=+++|........
T Consensus 63 ~~~W~~Ki~~n~~rD~~~~~~L~~~Gw~VlrfWe~ev~~~~~~~~~~v~~~I~~~l~~~~ 122 (136)
T 1vsr_A 63 TEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEG 122 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEHHHHSSTTCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEehHHhhhhccccHHHHHHHHHHHHHhCC
Confidence 5689999988776 789999999764 1 1112677777775543
Done!