BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036820
         (651 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
           Chemoreceptor From Thermotoga Maritima
          Length = 309

 Score = 33.5 bits (75), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 19/189 (10%)

Query: 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG-NSLDEAKRSGEVLAGELFAA 435
           N A D+E+ ++  +    ++ + +  I A  AE  + L  N+  EA R+GE   G    A
Sbjct: 107 NSAKDVERVVESFQKGAEEITSFVETINA-IAEQTNLLALNAAIEAARAGEAGRGFAVVA 165

Query: 436 KEVLK------KASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ-KEIV 488
            E+ K      +ASE ++ V +E+ + AE+   +  E+    ++    A++  E+   IV
Sbjct: 166 DEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIV 225

Query: 489 SS---LNKELQ----ALEKQTSKDKEARKSL---ETDLEEATKSLDEMNRNALELSKNLE 538
            +   +N+ LQ    A+E+QT+   E   ++     + EE T S+ E+N    E+S + E
Sbjct: 226 GAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTE 285

Query: 539 KANSQISNL 547
           +  S++  +
Sbjct: 286 EVTSRVQTI 294


>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
           Chemoreceptor From Thermotoga Maritima
          Length = 309

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 19/189 (10%)

Query: 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG-NSLDEAKRSGEVLAGELFAA 435
           N A D+E+ ++  +    ++ + +  I A  AE  + L  N+  EA R+GE   G    A
Sbjct: 107 NSAKDVERVVESFQKGAEEITSFVETINA-IAEQTNLLALNAAIEAARAGEAGRGFAVVA 165

Query: 436 KEVLK------KASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ-KEIV 488
            E+ K      +ASE ++ V +E+ + AE+   +  E+    ++    A++  E+   IV
Sbjct: 166 DEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIV 225

Query: 489 SS---LNKELQ----ALEKQTSKDKEARKSL---ETDLEEATKSLDEMNRNALELSKNLE 538
            +   +N+ LQ    A+E+Q +   E   ++     + EE T S+ E+N    E+S + E
Sbjct: 226 GAVERINEMLQNIAAAIEEQNAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTE 285

Query: 539 KANSQISNL 547
           +  S++  +
Sbjct: 286 EVTSRVQTI 294


>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
           Pyruvate Carboxylase
          Length = 451

 Score = 28.9 bits (63), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 528 RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESR---ENMEDAHNLVMRLGQ 584
           RN  EL KN E+A+      E EKA     L  +K I N      + + D H  V+ LG+
Sbjct: 171 RNEEELVKNYEQASR-----EAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGE 225

Query: 585 ERKSLDKRSKKLEE 598
              S+ +R++KL E
Sbjct: 226 RDCSIQRRNQKLVE 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.122    0.305 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,773,339
Number of Sequences: 62578
Number of extensions: 486678
Number of successful extensions: 1957
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 381
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)