Query 036820
Match_columns 651
No_of_seqs 43 out of 45
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 99.5 2.3E-07 5E-12 104.9 60.0 126 490-615 814-939 (1179)
2 KOG0161 Myosin class II heavy 99.5 6.8E-08 1.5E-12 118.2 58.6 256 337-609 1296-1551(1930)
3 PRK02224 chromosome segregatio 99.4 3E-07 6.5E-12 104.0 58.3 117 112-232 181-301 (880)
4 PRK02224 chromosome segregatio 99.4 5.5E-07 1.2E-11 102.0 58.2 170 115-294 166-340 (880)
5 TIGR02168 SMC_prok_B chromosom 99.4 1.3E-06 2.9E-11 98.8 58.7 74 485-558 823-896 (1179)
6 TIGR00606 rad50 rad50. This fa 99.3 1.1E-06 2.4E-11 104.8 56.9 444 174-621 576-1091(1311)
7 TIGR00606 rad50 rad50. This fa 99.3 1.9E-06 4.1E-11 102.9 57.2 181 239-421 472-672 (1311)
8 TIGR02169 SMC_prok_A chromosom 99.3 1.3E-05 2.8E-10 91.7 58.4 32 265-296 466-497 (1164)
9 KOG0161 Myosin class II heavy 99.2 9E-06 1.9E-10 100.3 58.4 436 107-561 848-1341(1930)
10 COG1196 Smc Chromosome segrega 99.2 5E-06 1.1E-10 98.3 53.5 186 417-602 752-937 (1163)
11 PRK03918 chromosome segregatio 99.2 2.9E-05 6.4E-10 87.8 58.4 33 91-123 156-188 (880)
12 TIGR02169 SMC_prok_A chromosom 99.1 4.5E-05 9.7E-10 87.3 56.9 122 431-552 799-920 (1164)
13 PRK03918 chromosome segregatio 99.1 5.6E-05 1.2E-09 85.6 54.6 71 533-603 624-699 (880)
14 KOG4674 Uncharacterized conser 98.9 0.00036 7.9E-09 85.9 51.5 460 134-621 634-1190(1822)
15 COG1196 Smc Chromosome segrega 98.9 0.00066 1.4E-08 80.9 54.6 194 416-616 709-916 (1163)
16 KOG4674 Uncharacterized conser 98.9 0.00089 1.9E-08 82.7 52.6 435 103-544 772-1245(1822)
17 PF05701 WEMBL: Weak chloropla 98.8 0.00041 8.9E-09 76.6 45.2 364 153-576 40-420 (522)
18 PF10174 Cast: RIM-binding pro 98.8 0.00039 8.5E-09 80.5 44.3 131 183-324 281-423 (775)
19 PRK01156 chromosome segregatio 98.8 0.001 2.2E-08 76.5 56.4 75 517-591 670-747 (895)
20 PRK01156 chromosome segregatio 98.8 0.0011 2.3E-08 76.4 51.1 27 358-384 365-391 (895)
21 PF01576 Myosin_tail_1: Myosin 98.7 2E-09 4.4E-14 123.6 0.0 487 123-620 118-659 (859)
22 PF05701 WEMBL: Weak chloropla 98.4 0.0065 1.4E-07 67.4 42.3 347 135-502 33-423 (522)
23 PF07888 CALCOCO1: Calcium bin 98.4 0.0013 2.9E-08 73.7 34.3 172 395-586 280-458 (546)
24 PF10174 Cast: RIM-binding pro 98.3 0.014 3.1E-07 68.0 51.2 479 93-602 56-601 (775)
25 PF00038 Filament: Intermediat 98.3 0.0027 5.9E-08 64.3 30.5 289 126-474 5-305 (312)
26 KOG0995 Centromere-associated 98.2 0.011 2.3E-07 66.8 35.0 345 107-472 196-578 (581)
27 KOG0977 Nuclear envelope prote 98.2 0.0018 3.9E-08 72.6 28.9 309 133-474 53-385 (546)
28 COG0419 SbcC ATPase involved i 98.2 0.032 7E-07 65.2 51.3 129 161-294 315-443 (908)
29 PF15070 GOLGA2L5: Putative go 98.1 0.0078 1.7E-07 68.5 33.0 273 265-567 84-378 (617)
30 PRK04778 septation ring format 98.1 0.016 3.4E-07 64.7 34.5 327 270-618 53-431 (569)
31 PF01576 Myosin_tail_1: Myosin 98.0 1.2E-06 2.6E-11 101.1 0.0 337 265-622 163-506 (859)
32 PF07888 CALCOCO1: Calcium bin 98.0 0.052 1.1E-06 61.3 35.2 92 317-414 335-426 (546)
33 KOG0933 Structural maintenance 97.9 0.12 2.6E-06 61.9 45.0 433 93-552 315-944 (1174)
34 KOG0978 E3 ubiquitin ligase in 97.8 0.12 2.6E-06 60.0 47.0 410 173-615 144-625 (698)
35 PRK04778 septation ring format 97.8 0.12 2.6E-06 57.9 45.4 187 280-483 228-429 (569)
36 PF05557 MAD: Mitotic checkpoi 97.8 2E-05 4.3E-10 89.2 4.3 142 305-449 282-432 (722)
37 COG1340 Uncharacterized archae 97.7 0.082 1.8E-06 55.9 28.4 206 265-476 66-276 (294)
38 PRK11637 AmiB activator; Provi 97.6 0.03 6.5E-07 60.1 25.5 15 305-319 168-182 (428)
39 COG0419 SbcC ATPase involved i 97.6 0.26 5.7E-06 57.8 58.2 120 269-388 323-442 (908)
40 PF00261 Tropomyosin: Tropomyo 97.6 0.02 4.4E-07 57.3 22.4 213 188-413 7-219 (237)
41 PF12128 DUF3584: Protein of u 97.6 0.35 7.6E-06 58.7 52.7 70 188-257 312-385 (1201)
42 PF00261 Tropomyosin: Tropomyo 97.5 0.041 8.8E-07 55.1 23.4 25 428-452 209-233 (237)
43 PHA02562 46 endonuclease subun 97.5 0.03 6.5E-07 60.7 23.5 179 344-529 215-401 (562)
44 PRK11637 AmiB activator; Provi 97.5 0.042 9.1E-07 59.0 23.7 33 345-377 183-215 (428)
45 PF06160 EzrA: Septation ring 97.4 0.33 7.1E-06 54.6 42.7 270 186-475 98-417 (560)
46 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.35 7.6E-06 54.8 34.1 290 157-475 205-519 (650)
47 PHA02562 46 endonuclease subun 97.4 0.33 7.1E-06 52.9 31.1 19 90-108 136-154 (562)
48 KOG0976 Rho/Rac1-interacting s 97.3 0.6 1.3E-05 55.3 39.6 338 219-607 87-454 (1265)
49 PF00038 Filament: Intermediat 97.3 0.24 5.2E-06 50.4 33.4 240 161-440 61-307 (312)
50 KOG0971 Microtubule-associated 97.2 0.98 2.1E-05 54.1 38.2 323 111-469 224-567 (1243)
51 PRK04863 mukB cell division pr 97.1 1.5 3.2E-05 55.1 39.5 205 90-297 265-485 (1486)
52 KOG0612 Rho-associated, coiled 97.1 1.4 3E-05 54.2 38.4 48 336-383 603-650 (1317)
53 PF05557 MAD: Mitotic checkpoi 97.0 0.00032 7E-09 79.6 2.4 103 310-416 226-330 (722)
54 KOG0250 DNA repair protein RAD 97.0 0.47 1E-05 57.3 27.4 219 344-616 223-454 (1074)
55 TIGR03185 DNA_S_dndD DNA sulfu 96.9 1.1 2.4E-05 51.0 31.7 126 480-609 392-520 (650)
56 PF06160 EzrA: Septation ring 96.9 1 2.2E-05 50.7 34.6 325 278-621 56-430 (560)
57 PF12718 Tropomyosin_1: Tropom 96.9 0.058 1.3E-06 51.1 16.1 131 156-295 9-142 (143)
58 KOG0250 DNA repair protein RAD 96.9 0.42 9.2E-06 57.7 26.5 87 209-295 280-371 (1074)
59 PF06785 UPF0242: Uncharacteri 96.8 0.04 8.6E-07 59.4 15.4 139 90-264 47-188 (401)
60 KOG0612 Rho-associated, coiled 96.7 2.4 5.3E-05 52.2 35.8 109 403-521 617-728 (1317)
61 COG1579 Zn-ribbon protein, pos 96.6 0.43 9.3E-06 49.3 20.4 171 351-529 15-185 (239)
62 KOG0976 Rho/Rac1-interacting s 96.3 3.9 8.4E-05 49.0 44.0 45 546-593 480-524 (1265)
63 PRK09039 hypothetical protein; 96.3 0.24 5.2E-06 52.7 17.2 141 228-390 43-185 (343)
64 PF15070 GOLGA2L5: Putative go 96.1 3.8 8.3E-05 47.4 37.7 268 137-404 5-313 (617)
65 KOG0964 Structural maintenance 96.1 5.2 0.00011 48.7 31.4 302 164-524 695-1001(1200)
66 PF09730 BicD: Microtubule-ass 96.1 4.5 9.8E-05 47.7 34.6 270 176-479 122-487 (717)
67 PF12128 DUF3584: Protein of u 95.8 7.1 0.00015 48.0 59.9 110 359-472 603-713 (1201)
68 PF15619 Lebercilin: Ciliary p 95.7 2.4 5.1E-05 42.4 20.3 132 113-246 14-147 (194)
69 TIGR03007 pepcterm_ChnLen poly 95.6 0.65 1.4E-05 50.4 17.4 49 310-358 250-298 (498)
70 KOG0963 Transcription factor/C 95.6 6.2 0.00013 45.9 29.0 282 335-617 8-343 (629)
71 KOG4593 Mitotic checkpoint pro 95.6 6.7 0.00014 46.2 49.0 224 165-397 134-380 (716)
72 KOG0018 Structural maintenance 95.6 4.1 8.8E-05 49.8 24.7 294 156-533 650-955 (1141)
73 PRK09039 hypothetical protein; 95.5 1.1 2.4E-05 47.9 18.3 50 359-408 42-91 (343)
74 KOG4643 Uncharacterized coiled 95.4 9.2 0.0002 46.8 34.1 320 103-474 270-608 (1195)
75 PF05483 SCP-1: Synaptonemal c 95.2 8.9 0.00019 45.3 55.0 369 207-618 360-766 (786)
76 COG1579 Zn-ribbon protein, pos 95.2 1.5 3.4E-05 45.4 17.5 158 269-437 11-170 (239)
77 PRK04863 mukB cell division pr 95.0 15 0.00032 46.8 45.7 105 153-258 278-382 (1486)
78 KOG0996 Structural maintenance 94.9 14 0.0003 45.9 47.1 58 543-600 1079-1141(1293)
79 KOG0946 ER-Golgi vesicle-tethe 94.8 9.9 0.00021 45.7 24.3 308 299-621 611-941 (970)
80 PF12718 Tropomyosin_1: Tropom 94.6 2.4 5.1E-05 40.4 16.0 95 510-604 45-142 (143)
81 KOG0996 Structural maintenance 94.6 16 0.00035 45.4 53.3 168 132-301 436-610 (1293)
82 COG5185 HEC1 Protein involved 94.6 11 0.00023 43.2 32.1 250 189-446 316-606 (622)
83 KOG0994 Extracellular matrix g 94.5 18 0.00038 45.3 46.2 57 556-616 1693-1749(1758)
84 KOG0963 Transcription factor/C 94.5 13 0.00027 43.5 35.1 119 257-388 222-342 (629)
85 TIGR03017 EpsF chain length de 94.4 5.7 0.00012 42.4 19.9 53 305-357 252-304 (444)
86 TIGR01005 eps_transp_fam exopo 94.3 3.9 8.5E-05 47.0 19.8 194 216-416 193-394 (754)
87 PF13514 AAA_27: AAA domain 94.3 17 0.00037 44.2 35.9 144 154-298 673-838 (1111)
88 PF06008 Laminin_I: Laminin Do 94.2 7.4 0.00016 39.6 24.4 214 313-529 23-256 (264)
89 PF05667 DUF812: Protein of un 94.0 11 0.00023 43.8 22.2 176 436-616 393-589 (594)
90 KOG0978 E3 ubiquitin ligase in 93.9 18 0.00038 42.9 41.6 171 356-526 447-620 (698)
91 PF04849 HAP1_N: HAP1 N-termin 93.8 11 0.00025 40.5 20.8 82 334-415 212-293 (306)
92 PF12777 MT: Microtubule-bindi 93.1 9.5 0.0002 40.6 18.8 100 510-609 217-316 (344)
93 KOG4673 Transcription factor T 92.9 26 0.00056 41.8 37.6 124 119-253 392-517 (961)
94 PF06008 Laminin_I: Laminin Do 92.6 13 0.00029 37.8 21.9 44 336-379 186-229 (264)
95 PF05010 TACC: Transforming ac 92.5 14 0.0003 37.7 20.1 152 108-263 34-200 (207)
96 KOG0977 Nuclear envelope prote 92.3 26 0.00056 40.5 25.4 70 165-234 145-214 (546)
97 KOG0999 Microtubule-associated 92.3 28 0.0006 40.7 26.4 228 314-545 15-260 (772)
98 PF05622 HOOK: HOOK protein; 92.2 0.041 8.9E-07 62.9 0.0 23 106-128 241-263 (713)
99 PF05483 SCP-1: Synaptonemal c 92.1 32 0.00068 41.0 57.2 168 90-264 75-266 (786)
100 PF08317 Spc7: Spc7 kinetochor 91.7 15 0.00032 38.9 17.9 54 358-411 211-264 (325)
101 KOG1103 Predicted coiled-coil 91.6 8.3 0.00018 42.7 16.3 76 376-451 219-294 (561)
102 KOG4673 Transcription factor T 91.4 38 0.00082 40.6 38.9 291 252-569 398-731 (961)
103 PF14988 DUF4515: Domain of un 91.3 18 0.00039 36.6 22.9 177 111-299 4-187 (206)
104 KOG0946 ER-Golgi vesicle-tethe 91.3 42 0.00091 40.7 26.8 101 130-234 616-716 (970)
105 KOG0971 Microtubule-associated 91.2 46 0.00099 41.0 29.6 247 132-387 268-556 (1243)
106 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 13 0.00028 34.5 18.0 127 103-233 2-128 (132)
107 PF08317 Spc7: Spc7 kinetochor 90.9 24 0.00053 37.3 23.1 83 332-414 101-200 (325)
108 COG4942 Membrane-bound metallo 90.3 36 0.00077 38.3 24.6 65 136-200 38-105 (420)
109 PF05622 HOOK: HOOK protein; 90.3 0.22 4.8E-06 57.2 3.3 55 336-390 364-418 (713)
110 PF13851 GAS: Growth-arrest sp 90.1 22 0.00048 35.7 21.1 160 351-526 22-190 (201)
111 PRK10929 putative mechanosensi 90.1 60 0.0013 40.5 33.4 56 318-376 265-320 (1109)
112 KOG1003 Actin filament-coating 90.0 26 0.00055 36.1 18.5 163 134-296 23-193 (205)
113 KOG0995 Centromere-associated 89.6 48 0.001 38.7 38.2 278 152-452 226-514 (581)
114 KOG0980 Actin-binding protein 89.3 62 0.0013 39.6 25.6 69 381-450 348-419 (980)
115 PRK10246 exonuclease subunit S 89.2 63 0.0014 39.6 56.9 31 91-121 178-208 (1047)
116 smart00787 Spc7 Spc7 kinetocho 89.0 17 0.00038 38.8 15.8 166 333-527 97-266 (312)
117 PF13851 GAS: Growth-arrest sp 88.8 28 0.0006 35.0 18.9 79 369-447 85-167 (201)
118 KOG0994 Extracellular matrix g 88.7 79 0.0017 40.1 36.4 140 151-292 1416-1566(1758)
119 PF09726 Macoilin: Transmembra 88.6 59 0.0013 38.5 24.0 217 359-605 428-661 (697)
120 smart00787 Spc7 Spc7 kinetocho 88.1 29 0.00062 37.2 16.7 192 63-264 50-265 (312)
121 COG3883 Uncharacterized protei 88.0 40 0.00087 35.9 18.8 50 265-314 166-215 (265)
122 PF08614 ATG16: Autophagy prot 87.9 1.5 3.3E-05 42.9 6.7 113 160-295 66-178 (194)
123 TIGR03007 pepcterm_ChnLen poly 87.8 47 0.001 36.4 20.2 33 158-190 201-233 (498)
124 PF05911 DUF869: Plant protein 87.7 72 0.0016 38.4 29.9 301 170-539 446-758 (769)
125 TIGR00634 recN DNA repair prot 87.0 60 0.0013 36.8 23.1 68 319-390 306-373 (563)
126 PF10186 Atg14: UV radiation r 86.9 22 0.00048 35.5 14.3 87 169-255 21-108 (302)
127 PF07889 DUF1664: Protein of u 86.1 20 0.00043 34.2 12.7 87 106-196 38-124 (126)
128 PF10368 YkyA: Putative cell-w 85.9 23 0.00051 35.6 13.9 172 91-302 4-201 (204)
129 PF04156 IncA: IncA protein; 85.0 34 0.00075 32.8 14.1 28 444-471 123-150 (191)
130 PF04156 IncA: IncA protein; 84.2 31 0.00067 33.1 13.4 13 337-349 90-102 (191)
131 KOG0964 Structural maintenance 84.1 1.2E+02 0.0027 37.8 46.6 251 320-579 607-898 (1200)
132 PF04582 Reo_sigmaC: Reovirus 84.0 0.79 1.7E-05 49.4 2.9 123 156-287 30-152 (326)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.9 37 0.0008 31.6 14.4 108 315-429 4-118 (132)
134 COG5185 HEC1 Protein involved 83.5 94 0.002 36.0 29.2 280 98-391 265-619 (622)
135 TIGR01843 type_I_hlyD type I s 83.3 62 0.0014 33.8 19.1 55 156-210 132-186 (423)
136 TIGR01000 bacteriocin_acc bact 83.0 79 0.0017 34.7 18.8 28 427-454 169-196 (457)
137 TIGR02680 conserved hypothetic 83.0 1.4E+02 0.0031 37.7 26.7 118 272-400 848-965 (1353)
138 COG1340 Uncharacterized archae 82.5 77 0.0017 34.3 31.2 197 126-348 3-206 (294)
139 PF08614 ATG16: Autophagy prot 82.2 5 0.00011 39.3 7.3 97 136-243 74-170 (194)
140 COG3883 Uncharacterized protei 81.9 77 0.0017 33.8 20.9 85 170-258 129-217 (265)
141 PRK10884 SH3 domain-containing 81.8 13 0.00028 37.7 10.3 27 327-353 85-111 (206)
142 PF15254 CCDC14: Coiled-coil d 81.3 25 0.00054 42.3 13.5 153 166-336 399-565 (861)
143 PF04582 Reo_sigmaC: Reovirus 80.9 1.3 2.9E-05 47.7 3.1 93 167-259 27-119 (326)
144 PF10186 Atg14: UV radiation r 80.9 64 0.0014 32.3 17.1 42 429-473 118-159 (302)
145 PRK10884 SH3 domain-containing 80.8 15 0.00032 37.3 10.2 45 168-212 118-162 (206)
146 COG4477 EzrA Negative regulato 80.7 1.2E+02 0.0027 35.4 24.7 131 490-620 285-432 (570)
147 PF08172 CASP_C: CASP C termin 80.5 1 2.2E-05 46.6 2.1 106 490-621 3-123 (248)
148 PF15035 Rootletin: Ciliary ro 79.8 69 0.0015 32.0 15.6 151 365-519 4-171 (182)
149 KOG0980 Actin-binding protein 78.7 1.8E+02 0.0038 36.0 26.2 56 266-332 429-484 (980)
150 PF10473 CENP-F_leu_zip: Leuci 78.3 69 0.0015 31.1 16.6 123 102-235 15-137 (140)
151 PF04849 HAP1_N: HAP1 N-termin 78.2 1.1E+02 0.0024 33.4 22.0 59 308-366 221-279 (306)
152 PF11559 ADIP: Afadin- and alp 78.1 61 0.0013 30.4 13.4 92 153-244 51-146 (151)
153 PF04912 Dynamitin: Dynamitin 77.4 1.1E+02 0.0025 33.1 17.6 180 131-325 89-306 (388)
154 TIGR01005 eps_transp_fam exopo 77.3 1.5E+02 0.0033 34.5 21.1 83 231-324 237-333 (754)
155 TIGR01000 bacteriocin_acc bact 77.2 1.2E+02 0.0026 33.3 20.0 19 237-255 242-260 (457)
156 PLN02939 transferase, transfer 76.8 2E+02 0.0044 35.8 26.2 38 315-352 272-310 (977)
157 KOG0933 Structural maintenance 76.8 2.1E+02 0.0046 35.9 51.7 152 99-253 239-393 (1174)
158 smart00806 AIP3 Actin interact 76.4 1.1E+02 0.0024 34.7 16.0 192 337-530 87-326 (426)
159 KOG0993 Rab5 GTPase effector R 76.2 1.5E+02 0.0033 34.0 26.6 124 286-411 360-489 (542)
160 PF10212 TTKRSYEDQ: Predicted 75.3 92 0.002 36.1 15.3 82 470-572 414-499 (518)
161 KOG0239 Kinesin (KAR3 subfamil 75.3 1.1E+02 0.0024 36.3 16.5 130 377-518 182-311 (670)
162 PF02994 Transposase_22: L1 tr 75.2 4.6 0.0001 43.7 5.2 88 157-244 94-192 (370)
163 KOG1003 Actin filament-coating 74.8 1.1E+02 0.0024 31.7 18.4 165 359-525 14-204 (205)
164 PF10473 CENP-F_leu_zip: Leuci 74.7 87 0.0019 30.5 15.0 108 478-585 9-116 (140)
165 PF08826 DMPK_coil: DMPK coile 74.6 14 0.0003 31.4 6.7 58 347-411 2-59 (61)
166 PF03962 Mnd1: Mnd1 family; I 74.5 75 0.0016 31.7 12.9 111 98-217 56-170 (188)
167 PF01442 Apolipoprotein: Apoli 74.3 70 0.0015 29.2 21.5 69 109-177 3-72 (202)
168 KOG0239 Kinesin (KAR3 subfamil 74.2 97 0.0021 36.7 15.6 130 131-261 184-319 (670)
169 PF05266 DUF724: Protein of un 74.0 1E+02 0.0022 31.1 13.7 139 91-242 45-184 (190)
170 PF15450 DUF4631: Domain of un 73.5 1.9E+02 0.0041 33.8 23.9 213 107-329 196-470 (531)
171 PF09728 Taxilin: Myosin-like 73.0 1.4E+02 0.003 32.0 30.0 244 157-420 25-280 (309)
172 PF12325 TMF_TATA_bd: TATA ele 73.0 81 0.0018 29.8 12.1 85 349-440 26-113 (120)
173 PF07889 DUF1664: Protein of u 72.7 37 0.0008 32.5 9.8 55 175-229 68-122 (126)
174 PF04899 MbeD_MobD: MbeD/MobD 72.5 28 0.0006 30.3 8.2 56 124-179 9-67 (70)
175 PF09738 DUF2051: Double stran 72.3 54 0.0012 35.3 12.1 93 308-414 78-170 (302)
176 KOG4593 Mitotic checkpoint pro 71.8 2.3E+02 0.005 34.1 46.9 127 454-597 394-523 (716)
177 PF10498 IFT57: Intra-flagella 71.6 1.3E+02 0.0027 33.2 14.9 70 432-502 282-351 (359)
178 PRK00286 xseA exodeoxyribonucl 71.5 1.6E+02 0.0035 32.2 17.8 67 158-230 324-392 (438)
179 KOG2196 Nuclear porin [Nuclear 71.3 45 0.00098 35.4 10.9 137 91-227 111-253 (254)
180 PF09789 DUF2353: Uncharacteri 71.1 1.7E+02 0.0036 32.1 17.1 153 378-564 66-225 (319)
181 PF09789 DUF2353: Uncharacteri 71.0 1.7E+02 0.0036 32.1 21.4 143 173-330 70-219 (319)
182 PF09728 Taxilin: Myosin-like 70.8 1.6E+02 0.0034 31.7 35.5 143 270-415 10-152 (309)
183 KOG4643 Uncharacterized coiled 69.6 3.1E+02 0.0067 34.7 42.6 176 319-507 365-558 (1195)
184 TIGR00634 recN DNA repair prot 69.6 2.1E+02 0.0045 32.6 23.5 55 154-212 144-198 (563)
185 PF10168 Nup88: Nuclear pore c 69.4 1.8E+02 0.004 34.7 16.6 93 125-217 543-642 (717)
186 PF07111 HCR: Alpha helical co 69.0 2.7E+02 0.0058 33.7 44.8 372 186-603 112-533 (739)
187 PF09787 Golgin_A5: Golgin sub 68.9 2.1E+02 0.0045 32.4 26.2 152 378-601 275-430 (511)
188 PF15619 Lebercilin: Ciliary p 68.8 1.4E+02 0.003 30.2 22.3 177 308-501 6-186 (194)
189 PF03148 Tektin: Tektin family 68.6 1.9E+02 0.004 31.7 20.4 186 106-296 132-352 (384)
190 KOG0962 DNA repair protein RAD 68.5 3.5E+02 0.0075 34.8 43.7 433 100-582 486-950 (1294)
191 PF06103 DUF948: Bacterial pro 68.5 35 0.00076 29.5 8.1 31 216-246 60-90 (90)
192 PRK10929 putative mechanosensi 68.3 3.3E+02 0.0071 34.5 32.3 30 119-148 62-91 (1109)
193 PHA03161 hypothetical protein; 67.5 52 0.0011 32.6 9.9 96 139-241 11-113 (150)
194 PF15035 Rootletin: Ciliary ro 67.2 48 0.001 33.1 9.8 104 351-454 4-126 (182)
195 PF08606 Prp19: Prp19/Pso4-lik 67.0 26 0.00056 30.8 6.9 43 310-352 25-67 (70)
196 PRK11281 hypothetical protein; 66.9 3.5E+02 0.0075 34.2 28.7 50 481-530 280-329 (1113)
197 TIGR03017 EpsF chain length de 65.8 2E+02 0.0043 31.0 19.1 44 239-284 255-298 (444)
198 PF04111 APG6: Autophagy prote 65.8 75 0.0016 34.0 11.5 44 368-411 48-91 (314)
199 PF04375 HemX: HemX; InterPro 65.6 1.1E+02 0.0025 33.1 13.0 33 96-128 45-77 (372)
200 PF10212 TTKRSYEDQ: Predicted 65.6 2.7E+02 0.0059 32.5 17.8 91 168-258 420-514 (518)
201 PF05739 SNARE: SNARE domain; 65.1 61 0.0013 25.8 8.3 52 162-213 5-56 (63)
202 PF09304 Cortex-I_coil: Cortex 64.3 1.2E+02 0.0025 28.8 11.0 35 166-200 42-76 (107)
203 PRK14143 heat shock protein Gr 64.0 91 0.002 32.6 11.4 100 375-474 65-165 (238)
204 KOG4438 Centromere-associated 63.8 2.7E+02 0.0059 31.9 26.4 77 426-503 244-323 (446)
205 PF08687 ASD2: Apx/Shroom doma 63.7 2.1E+02 0.0045 30.6 14.1 121 474-601 105-258 (264)
206 PF14662 CCDC155: Coiled-coil 62.8 1.9E+02 0.0041 29.8 21.0 168 137-324 19-189 (193)
207 PF05667 DUF812: Protein of un 61.9 3.2E+02 0.007 32.1 30.3 255 165-476 325-589 (594)
208 TIGR01010 BexC_CtrB_KpsE polys 61.6 1.1E+02 0.0024 32.3 11.9 93 265-359 174-266 (362)
209 PF07111 HCR: Alpha helical co 61.4 3.7E+02 0.008 32.6 46.0 52 490-541 518-569 (739)
210 PF07200 Mod_r: Modifier of ru 61.3 1.4E+02 0.0031 27.8 11.6 64 369-432 54-119 (150)
211 PRK12705 hypothetical protein; 60.6 3.1E+02 0.0066 31.8 15.7 22 581-602 418-441 (508)
212 PHA02047 phage lambda Rz1-like 59.7 68 0.0015 30.0 8.5 47 94-151 15-63 (101)
213 COG4477 EzrA Negative regulato 57.9 3.8E+02 0.0082 31.7 34.0 269 242-521 161-482 (570)
214 PF06818 Fez1: Fez1; InterPro 57.7 2.4E+02 0.0051 29.2 16.6 60 198-257 12-71 (202)
215 KOG0804 Cytoplasmic Zn-finger 56.5 2.4E+02 0.0051 32.6 13.6 54 176-236 348-401 (493)
216 PF04012 PspA_IM30: PspA/IM30 55.7 2.2E+02 0.0047 28.2 18.3 99 159-257 28-131 (221)
217 PRK14139 heat shock protein Gr 55.6 1.8E+02 0.0039 29.5 11.5 94 377-473 32-126 (185)
218 KOG4787 Uncharacterized conser 55.6 4.4E+02 0.0096 31.7 18.5 198 265-468 336-556 (852)
219 PF10498 IFT57: Intra-flagella 55.5 3.1E+02 0.0067 30.3 14.2 15 55-69 64-78 (359)
220 PF15294 Leu_zip: Leucine zipp 55.4 3E+02 0.0065 29.8 21.5 126 359-502 142-276 (278)
221 PF12761 End3: Actin cytoskele 55.4 60 0.0013 33.2 8.3 86 173-258 101-194 (195)
222 PF11932 DUF3450: Protein of u 55.4 2.4E+02 0.0053 28.7 13.3 97 430-526 21-117 (251)
223 cd07648 F-BAR_FCHO The F-BAR ( 55.2 2.5E+02 0.0053 28.7 17.3 102 314-419 70-171 (261)
224 PF11932 DUF3450: Protein of u 54.9 2.5E+02 0.0054 28.6 13.0 69 152-220 47-115 (251)
225 COG2433 Uncharacterized conser 54.3 1.1E+02 0.0024 36.3 10.9 90 157-250 418-507 (652)
226 PF10146 zf-C4H2: Zinc finger- 54.2 1.4E+02 0.003 31.1 10.7 72 343-414 12-83 (230)
227 PF10112 Halogen_Hydrol: 5-bro 52.8 2.4E+02 0.0051 27.7 11.7 50 100-149 64-114 (199)
228 KOG1029 Endocytic adaptor prot 52.8 5.5E+02 0.012 32.0 20.9 49 157-205 419-467 (1118)
229 KOG4552 Vitamin-D-receptor int 52.7 2E+02 0.0044 30.4 11.5 105 434-548 8-119 (272)
230 PF07544 Med9: RNA polymerase 52.6 34 0.00075 29.9 5.3 59 164-226 24-82 (83)
231 KOG1853 LIS1-interacting prote 52.5 3.4E+02 0.0075 29.5 17.3 72 366-437 30-105 (333)
232 PF05852 DUF848: Gammaherpesvi 52.2 1.3E+02 0.0027 29.8 9.6 91 139-236 11-108 (146)
233 COG1570 XseA Exonuclease VII, 52.2 4.2E+02 0.009 30.4 16.4 107 112-231 277-389 (440)
234 PF14389 Lzipper-MIP1: Leucine 52.2 24 0.00052 31.3 4.4 74 488-561 10-87 (88)
235 PRK10246 exonuclease subunit S 51.7 5.6E+02 0.012 31.8 57.0 20 91-110 154-173 (1047)
236 PF12329 TMF_DNA_bd: TATA elem 51.3 1.6E+02 0.0035 25.5 9.5 13 136-148 5-17 (74)
237 KOG0804 Cytoplasmic Zn-finger 50.9 3.8E+02 0.0082 31.1 14.1 29 474-502 391-419 (493)
238 PF04912 Dynamitin: Dynamitin 50.4 3.6E+02 0.0077 29.4 13.6 51 214-264 319-369 (388)
239 PF06120 Phage_HK97_TLTM: Tail 50.1 3.7E+02 0.0081 29.3 19.5 21 96-116 34-54 (301)
240 PF08702 Fib_alpha: Fibrinogen 49.5 2.5E+02 0.0055 27.2 13.1 19 207-227 82-100 (146)
241 PF14197 Cep57_CLD_2: Centroso 49.1 98 0.0021 26.7 7.4 64 313-376 4-67 (69)
242 PRK10869 recombination and rep 49.1 4.7E+02 0.01 30.1 24.3 223 256-505 158-389 (553)
243 PF10267 Tmemb_cc2: Predicted 49.0 1E+02 0.0023 34.4 9.5 68 349-419 229-297 (395)
244 PF01025 GrpE: GrpE; InterPro 49.0 25 0.00053 33.1 4.2 53 393-445 27-80 (165)
245 PRK12704 phosphodiesterase; Pr 48.8 4.8E+02 0.01 30.1 18.5 46 198-243 105-150 (520)
246 PF06156 DUF972: Protein of un 48.4 1.1E+02 0.0024 28.4 8.2 43 157-199 4-46 (107)
247 PF12325 TMF_TATA_bd: TATA ele 48.3 2.5E+02 0.0054 26.7 13.1 91 365-470 18-108 (120)
248 COG0497 RecN ATPase involved i 48.1 5.3E+02 0.011 30.4 19.6 85 417-505 305-390 (557)
249 KOG2010 Double stranded RNA bi 48.1 1.2E+02 0.0026 33.7 9.6 64 351-414 138-205 (405)
250 PF14992 TMCO5: TMCO5 family 47.6 2.2E+02 0.0047 30.8 11.2 54 385-449 117-170 (280)
251 PF09726 Macoilin: Transmembra 47.5 5.8E+02 0.012 30.7 25.9 35 163-197 420-454 (697)
252 PRK14150 heat shock protein Gr 47.5 2.8E+02 0.0061 28.0 11.5 95 377-474 41-136 (193)
253 KOG0972 Huntingtin interacting 47.4 3.2E+02 0.0069 30.3 12.4 120 125-258 230-355 (384)
254 PF07426 Dynactin_p22: Dynacti 47.3 3E+02 0.0066 27.4 14.5 161 215-410 3-173 (174)
255 PF10368 YkyA: Putative cell-w 47.3 3.2E+02 0.007 27.7 15.3 46 90-135 16-64 (204)
256 PRK09343 prefoldin subunit bet 47.3 1.1E+02 0.0025 28.4 8.2 73 493-565 14-108 (121)
257 COG2433 Uncharacterized conser 47.2 2.7E+02 0.0059 33.2 12.6 75 152-230 434-508 (652)
258 COG4026 Uncharacterized protei 46.9 1E+02 0.0022 32.8 8.5 75 339-413 132-206 (290)
259 PF06428 Sec2p: GDP/GTP exchan 46.7 23 0.00051 32.5 3.5 70 539-621 12-81 (100)
260 PF10805 DUF2730: Protein of u 46.6 2.2E+02 0.0047 26.1 9.6 81 92-192 16-96 (106)
261 PRK15178 Vi polysaccharide exp 46.0 5.1E+02 0.011 29.6 14.8 95 190-284 287-385 (434)
262 PRK03947 prefoldin subunit alp 45.7 2.5E+02 0.0055 26.0 12.0 11 205-215 92-102 (140)
263 PF03245 Phage_lysis: Bacterio 45.4 49 0.0011 31.0 5.5 52 567-618 11-62 (125)
264 smart00502 BBC B-Box C-termina 45.2 2E+02 0.0044 24.8 16.1 77 121-197 24-101 (127)
265 PF02601 Exonuc_VII_L: Exonucl 45.0 3.8E+02 0.0083 27.9 16.1 90 109-198 138-229 (319)
266 PF09304 Cortex-I_coil: Cortex 45.0 2.8E+02 0.0061 26.3 14.7 102 105-214 3-104 (107)
267 PF10168 Nup88: Nuclear pore c 44.8 1.8E+02 0.0039 34.7 11.1 19 59-78 504-522 (717)
268 TIGR00618 sbcc exonuclease Sbc 44.8 6.8E+02 0.015 30.8 55.8 31 91-121 174-204 (1042)
269 KOG0249 LAR-interacting protei 44.8 4.6E+02 0.01 32.2 14.1 125 91-223 133-257 (916)
270 PF12072 DUF3552: Domain of un 44.3 3.4E+02 0.0073 27.1 18.0 8 93-100 13-20 (201)
271 PLN02939 transferase, transfer 44.0 7.6E+02 0.017 31.1 20.0 100 308-411 230-344 (977)
272 PF11570 E2R135: Coiled-coil r 44.0 3.3E+02 0.0071 26.9 11.2 114 97-212 8-135 (136)
273 PF14992 TMCO5: TMCO5 family 43.8 3.6E+02 0.0079 29.2 12.1 157 152-333 16-186 (280)
274 PF04111 APG6: Autophagy prote 43.5 3E+02 0.0066 29.5 11.6 8 318-325 13-20 (314)
275 TIGR00996 Mtu_fam_mce virulenc 43.4 3.8E+02 0.0082 27.4 15.2 22 401-422 198-219 (291)
276 PF06248 Zw10: Centromere/kine 43.1 5.7E+02 0.012 29.3 16.4 193 394-597 10-235 (593)
277 PF09738 DUF2051: Double stran 43.0 4.5E+02 0.0097 28.6 12.8 137 154-294 105-245 (302)
278 KOG2662 Magnesium transporters 42.8 3.7E+02 0.008 30.7 12.4 83 159-241 218-335 (414)
279 PF03908 Sec20: Sec20; InterP 42.7 1.4E+02 0.003 26.2 7.6 62 338-399 4-65 (92)
280 PF01442 Apolipoprotein: Apoli 42.5 2.7E+02 0.0058 25.4 23.1 23 335-357 27-49 (202)
281 PRK14148 heat shock protein Gr 42.5 3.5E+02 0.0076 27.7 11.3 69 376-444 39-108 (195)
282 PLN00042 photosystem II oxygen 42.4 11 0.00023 39.9 0.8 9 5-13 2-10 (260)
283 PF15066 CAGE1: Cancer-associa 42.2 6.3E+02 0.014 29.6 19.7 136 155-293 356-503 (527)
284 cd00193 t_SNARE Soluble NSF (N 42.1 1.5E+02 0.0033 22.5 7.9 50 163-212 8-57 (60)
285 PF06705 SF-assemblin: SF-asse 42.0 3.9E+02 0.0085 27.2 21.8 30 120-149 54-83 (247)
286 cd07658 F-BAR_NOSTRIN The F-BA 41.8 4E+02 0.0088 27.3 17.9 201 382-594 10-213 (239)
287 PF15186 TEX13: Testis-express 41.7 1.1E+02 0.0024 30.5 7.4 59 412-470 88-150 (152)
288 PF14931 IFT20: Intraflagellar 41.3 3.2E+02 0.0069 26.0 11.6 57 144-200 17-73 (120)
289 PRK14154 heat shock protein Gr 41.0 3.8E+02 0.0082 27.8 11.4 63 380-442 55-118 (208)
290 TIGR02338 gimC_beta prefoldin, 40.9 2.4E+02 0.0053 25.5 9.1 17 203-219 63-79 (110)
291 KOG0812 SNARE protein SED5/Syn 40.7 2.6E+02 0.0057 30.7 10.5 67 154-220 220-286 (311)
292 PF07200 Mod_r: Modifier of ru 40.6 2.4E+02 0.0053 26.3 9.3 64 226-292 57-120 (150)
293 PRK11519 tyrosine kinase; Prov 40.3 3.3E+02 0.0072 32.1 12.3 75 265-341 271-345 (719)
294 PF13166 AAA_13: AAA domain 40.1 6.3E+02 0.014 29.1 34.1 151 378-541 364-519 (712)
295 TIGR01010 BexC_CtrB_KpsE polys 40.1 3.5E+02 0.0076 28.7 11.5 29 236-264 212-240 (362)
296 PRK14151 heat shock protein Gr 40.0 3.7E+02 0.0081 26.9 10.9 63 381-443 24-87 (176)
297 KOG4360 Uncharacterized coiled 40.0 7E+02 0.015 29.6 15.1 141 113-260 161-304 (596)
298 COG4942 Membrane-bound metallo 40.0 6.2E+02 0.014 28.9 26.4 38 459-496 151-188 (420)
299 PRK06975 bifunctional uroporph 39.8 2.4E+02 0.0051 33.2 11.0 93 265-363 382-481 (656)
300 PF05335 DUF745: Protein of un 39.2 4.3E+02 0.0094 26.9 13.1 74 162-235 89-162 (188)
301 PRK11281 hypothetical protein; 39.2 9.3E+02 0.02 30.7 35.0 54 320-376 287-340 (1113)
302 PF12329 TMF_DNA_bd: TATA elem 39.2 2.6E+02 0.0056 24.3 9.8 19 115-133 2-20 (74)
303 PF04837 MbeB_N: MbeB-like, N- 39.1 1.6E+02 0.0034 24.6 6.8 46 127-172 4-50 (52)
304 PF10146 zf-C4H2: Zinc finger- 38.8 4.8E+02 0.01 27.3 14.7 72 136-211 32-103 (230)
305 PF10481 CENP-F_N: Cenp-F N-te 38.7 5.7E+02 0.012 28.1 14.1 88 124-212 38-125 (307)
306 PF04513 Baculo_PEP_C: Baculov 38.6 4E+02 0.0086 26.3 11.4 93 159-257 18-111 (140)
307 cd07592 BAR_Endophilin_A The B 38.4 4.7E+02 0.01 27.1 13.0 84 322-418 85-177 (223)
308 PRK10361 DNA recombination pro 38.2 6.9E+02 0.015 28.9 20.8 58 532-589 144-205 (475)
309 PF05335 DUF745: Protein of un 38.0 4.5E+02 0.0098 26.7 13.8 100 332-456 64-163 (188)
310 PF04728 LPP: Lipoprotein leuc 37.9 1.6E+02 0.0036 25.0 6.8 42 159-200 8-49 (56)
311 TIGR03319 YmdA_YtgF conserved 37.6 6.9E+02 0.015 28.8 18.5 54 192-245 93-146 (514)
312 PF05384 DegS: Sensor protein 37.6 4.2E+02 0.0092 26.3 17.0 110 365-477 4-124 (159)
313 PF07106 TBPIP: Tat binding pr 37.6 3.5E+02 0.0076 26.0 10.1 32 382-413 77-108 (169)
314 PF04799 Fzo_mitofusin: fzo-li 37.5 2.3E+02 0.0049 28.7 9.0 32 70-101 31-62 (171)
315 TIGR01069 mutS2 MutS2 family p 37.5 4.6E+02 0.01 31.6 13.0 9 603-611 638-646 (771)
316 PRK00106 hypothetical protein; 37.2 7.4E+02 0.016 29.0 19.3 178 272-460 36-215 (535)
317 PRK09973 putative outer membra 36.9 1.4E+02 0.003 27.2 6.7 45 157-201 27-71 (85)
318 PLN02320 seryl-tRNA synthetase 36.2 2.1E+02 0.0045 33.1 9.6 63 346-415 62-124 (502)
319 PF06785 UPF0242: Uncharacteri 35.8 6.9E+02 0.015 28.2 15.8 108 169-276 79-191 (401)
320 PF09730 BicD: Microtubule-ass 35.4 9E+02 0.02 29.5 37.1 77 147-223 20-97 (717)
321 PHA03332 membrane glycoprotein 35.4 4E+02 0.0087 33.9 12.1 82 180-264 896-995 (1328)
322 PF04012 PspA_IM30: PspA/IM30 35.3 4.5E+02 0.0098 26.0 17.4 145 179-325 27-176 (221)
323 PF07106 TBPIP: Tat binding pr 35.3 69 0.0015 30.6 5.0 64 226-289 74-137 (169)
324 TIGR00414 serS seryl-tRNA synt 35.0 2.8E+02 0.006 30.9 10.1 57 359-415 5-61 (418)
325 PF11727 ISG65-75: Invariant s 34.9 5.6E+02 0.012 27.0 12.1 44 90-133 37-81 (286)
326 PRK14153 heat shock protein Gr 34.9 3.8E+02 0.0081 27.5 10.2 66 378-443 34-100 (194)
327 PRK14147 heat shock protein Gr 34.3 4.8E+02 0.01 26.0 10.9 60 383-442 24-84 (172)
328 PRK14162 heat shock protein Gr 33.9 5.3E+02 0.012 26.4 11.5 68 375-442 37-105 (194)
329 COG0576 GrpE Molecular chapero 33.4 5.2E+02 0.011 26.1 11.3 59 377-442 43-102 (193)
330 KOG0249 LAR-interacting protei 33.3 1E+03 0.022 29.5 18.7 34 262-295 50-83 (916)
331 smart00503 SynN Syntaxin N-ter 33.3 3.3E+02 0.0071 23.7 11.8 31 158-188 5-35 (117)
332 PF07464 ApoLp-III: Apolipopho 33.3 1.8E+02 0.004 28.6 7.5 64 153-216 33-97 (155)
333 KOG0972 Huntingtin interacting 33.3 1.8E+02 0.0039 32.2 8.0 81 251-332 247-336 (384)
334 PF10392 COG5: Golgi transport 33.1 4.1E+02 0.0089 24.8 10.5 82 395-483 30-111 (132)
335 PF15050 SCIMP: SCIMP protein 32.2 42 0.00092 32.5 2.9 54 6-60 64-123 (133)
336 PF00015 MCPsignal: Methyl-acc 32.1 4.4E+02 0.0095 24.8 16.8 26 110-135 15-40 (213)
337 PRK04325 hypothetical protein; 32.0 2E+02 0.0043 25.0 6.7 34 165-198 6-39 (74)
338 PRK14141 heat shock protein Gr 31.9 5.2E+02 0.011 26.7 10.7 92 382-473 36-133 (209)
339 PRK15422 septal ring assembly 31.7 2.4E+02 0.0051 25.6 7.2 71 203-275 4-74 (79)
340 PF08580 KAR9: Yeast cortical 31.6 9.9E+02 0.021 28.8 28.7 74 156-229 17-90 (683)
341 KOG1899 LAR transmembrane tyro 31.4 1E+03 0.023 29.0 14.5 49 301-352 264-312 (861)
342 PRK00409 recombination and DNA 31.4 1E+03 0.022 28.9 15.3 54 367-420 506-559 (782)
343 PF09787 Golgin_A5: Golgin sub 30.6 8.6E+02 0.019 27.7 28.0 23 114-136 158-180 (511)
344 smart00503 SynN Syntaxin N-ter 30.3 3.7E+02 0.0079 23.4 11.5 12 459-470 90-101 (117)
345 PF06810 Phage_GP20: Phage min 30.3 4.1E+02 0.0089 25.9 9.3 17 279-295 120-136 (155)
346 PF04102 SlyX: SlyX; InterPro 30.1 2.4E+02 0.0052 23.9 6.8 8 181-188 17-24 (69)
347 PF03999 MAP65_ASE1: Microtubu 30.0 1.4E+02 0.0031 34.5 7.1 37 198-234 86-122 (619)
348 PF06148 COG2: COG (conserved 29.7 65 0.0014 29.7 3.7 78 153-230 40-117 (133)
349 PF02994 Transposase_22: L1 tr 29.5 49 0.0011 36.1 3.2 95 159-256 82-176 (370)
350 PF09403 FadA: Adhesion protei 29.5 5.2E+02 0.011 24.9 9.8 66 240-305 22-89 (126)
351 COG2882 FliJ Flagellar biosynt 29.5 5.7E+02 0.012 25.3 11.8 80 145-225 35-117 (148)
352 PF13870 DUF4201: Domain of un 29.4 5.3E+02 0.011 24.9 13.9 114 334-447 55-176 (177)
353 PF13166 AAA_13: AAA domain 29.3 9.3E+02 0.02 27.8 33.3 26 393-418 324-349 (712)
354 PF14662 CCDC155: Coiled-coil 29.1 6.7E+02 0.014 26.0 21.2 127 362-502 56-188 (193)
355 COG4372 Uncharacterized protei 28.9 9.5E+02 0.021 27.8 19.8 139 359-504 84-228 (499)
356 PF06005 DUF904: Protein of un 28.8 4E+02 0.0086 23.3 9.0 62 358-419 6-67 (72)
357 PF11101 DUF2884: Protein of u 28.8 6.5E+02 0.014 25.8 11.1 85 125-216 124-219 (229)
358 PF08702 Fib_alpha: Fibrinogen 28.7 5.5E+02 0.012 24.9 15.5 8 91-98 20-27 (146)
359 KOG2685 Cystoskeletal protein 28.4 9.6E+02 0.021 27.6 16.0 116 107-225 252-401 (421)
360 PF14915 CCDC144C: CCDC144C pr 28.3 8.5E+02 0.018 26.9 25.6 211 299-519 26-240 (305)
361 PF03915 AIP3: Actin interacti 28.2 4.7E+02 0.01 29.7 10.5 107 152-263 160-271 (424)
362 PF03962 Mnd1: Mnd1 family; I 28.2 6.2E+02 0.013 25.4 11.6 57 480-539 111-167 (188)
363 PF00769 ERM: Ezrin/radixin/mo 28.0 7E+02 0.015 25.9 14.0 123 311-451 9-131 (246)
364 PF11577 NEMO: NF-kappa-B esse 27.9 4.1E+02 0.0089 23.2 7.9 63 369-431 5-67 (68)
365 PF10046 BLOC1_2: Biogenesis o 27.9 4.5E+02 0.0097 23.6 10.6 79 97-194 21-99 (99)
366 KOG2629 Peroxisomal membrane a 27.9 2.4E+02 0.0051 30.9 7.8 50 407-456 120-169 (300)
367 PRK10920 putative uroporphyrin 27.8 9.1E+02 0.02 27.2 15.7 31 93-123 49-79 (390)
368 PF04100 Vps53_N: Vps53-like, 27.8 7.3E+02 0.016 27.4 11.7 90 133-226 29-118 (383)
369 PF15290 Syntaphilin: Golgi-lo 27.7 8.6E+02 0.019 26.8 16.0 17 111-127 68-84 (305)
370 PF04100 Vps53_N: Vps53-like, 27.6 4E+02 0.0087 29.4 9.7 72 217-293 64-135 (383)
371 PRK14163 heat shock protein Gr 27.4 7.3E+02 0.016 25.9 11.0 63 381-443 44-107 (214)
372 KOG0018 Structural maintenance 27.3 1.4E+03 0.031 29.3 43.5 108 399-515 778-892 (1141)
373 PF06810 Phage_GP20: Phage min 27.2 6E+02 0.013 24.8 10.1 77 336-423 7-83 (155)
374 COG4026 Uncharacterized protei 27.2 1.7E+02 0.0036 31.3 6.4 69 265-344 139-207 (290)
375 PF04102 SlyX: SlyX; InterPro 27.1 2.3E+02 0.005 24.0 6.2 51 187-237 2-52 (69)
376 PRK04406 hypothetical protein; 27.1 2.7E+02 0.0058 24.4 6.7 49 186-234 8-56 (75)
377 PF08172 CASP_C: CASP C termin 27.0 4.4E+02 0.0096 27.7 9.5 47 365-411 81-127 (248)
378 PRK11519 tyrosine kinase; Prov 27.0 7.7E+02 0.017 29.2 12.4 35 161-195 260-294 (719)
379 PRK15396 murein lipoprotein; P 26.8 2.9E+02 0.0063 24.7 6.9 41 159-199 30-70 (78)
380 PRK06975 bifunctional uroporph 26.2 1.1E+03 0.023 28.0 13.3 21 278-298 485-505 (656)
381 PF05384 DegS: Sensor protein 26.2 6.6E+02 0.014 25.0 18.0 90 452-548 63-153 (159)
382 PLN00067 PsbP domain-containin 26.1 38 0.00083 36.1 1.7 22 60-82 41-62 (263)
383 KOG0240 Kinesin (SMY1 subfamil 25.9 1.2E+03 0.026 28.0 15.8 192 270-474 347-551 (607)
384 PRK14155 heat shock protein Gr 25.8 7.5E+02 0.016 25.5 10.8 65 380-444 16-81 (208)
385 smart00338 BRLZ basic region l 25.8 2.2E+02 0.0047 23.4 5.7 38 377-414 26-63 (65)
386 PF06476 DUF1090: Protein of u 25.7 5.7E+02 0.012 24.1 10.1 92 312-415 22-113 (115)
387 PRK14140 heat shock protein Gr 25.7 7.3E+02 0.016 25.3 11.5 66 378-443 38-104 (191)
388 PF14712 Snapin_Pallidin: Snap 25.3 4.4E+02 0.0096 22.7 11.4 27 159-185 62-88 (92)
389 cd00179 SynN Syntaxin N-termin 25.3 5.3E+02 0.011 23.6 10.9 105 158-263 3-113 (151)
390 PRK12704 phosphodiesterase; Pr 25.2 1.1E+03 0.024 27.3 19.6 17 581-597 430-446 (520)
391 PF10267 Tmemb_cc2: Predicted 25.0 1E+03 0.023 26.9 14.9 48 107-155 208-256 (395)
392 PF01920 Prefoldin_2: Prefoldi 25.0 2.8E+02 0.006 23.9 6.5 77 220-296 1-97 (106)
393 PRK00846 hypothetical protein; 24.8 2.6E+02 0.0056 25.0 6.2 46 190-235 14-59 (77)
394 PRK14145 heat shock protein Gr 24.3 7.9E+02 0.017 25.3 11.5 72 372-443 40-112 (196)
395 PF05010 TACC: Transforming ac 24.3 8.1E+02 0.017 25.4 23.4 183 369-565 8-198 (207)
396 PHA00724 hypothetical protein 24.3 12 0.00025 33.3 -2.0 28 1-28 31-61 (83)
397 PF11802 CENP-K: Centromere-as 24.2 8.1E+02 0.018 26.6 10.8 86 387-474 92-180 (268)
398 TIGR03545 conserved hypothetic 24.1 9.1E+02 0.02 28.3 12.1 46 104-149 157-204 (555)
399 KOG4302 Microtubule-associated 24.0 1.3E+03 0.029 27.8 28.2 70 170-241 23-92 (660)
400 COG1382 GimC Prefoldin, chaper 24.0 6.6E+02 0.014 24.2 10.5 41 204-247 67-107 (119)
401 PF11945 WASH_WAHD: WAHD domai 23.9 3.6E+02 0.0077 29.2 8.3 48 150-197 25-72 (297)
402 COG0711 AtpF F0F1-type ATP syn 23.6 6.8E+02 0.015 24.2 13.1 56 378-433 38-93 (161)
403 PF05377 FlaC_arch: Flagella a 23.5 2.4E+02 0.0053 23.9 5.5 33 170-202 2-34 (55)
404 PF01025 GrpE: GrpE; InterPro 23.4 4.8E+02 0.01 24.6 8.2 66 105-170 12-78 (165)
405 PF12795 MscS_porin: Mechanose 23.3 7.9E+02 0.017 24.9 15.2 85 530-614 94-189 (240)
406 PRK13729 conjugal transfer pil 23.3 1.2E+02 0.0027 34.8 5.0 52 275-326 69-123 (475)
407 cd00193 t_SNARE Soluble NSF (N 23.3 3.4E+02 0.0074 20.6 8.5 44 158-201 17-60 (60)
408 PF04977 DivIC: Septum formati 23.3 3.4E+02 0.0073 22.2 6.4 47 172-218 21-67 (80)
409 PF09763 Sec3_C: Exocyst compl 23.2 1E+03 0.022 28.0 12.4 90 431-539 45-135 (701)
410 PF07544 Med9: RNA polymerase 23.0 1.4E+02 0.003 26.2 4.3 62 519-584 19-80 (83)
411 TIGR02231 conserved hypothetic 22.6 4.9E+02 0.011 29.3 9.5 32 360-391 128-159 (525)
412 PF05739 SNARE: SNARE domain; 22.6 3.9E+02 0.0085 21.1 9.3 47 157-203 14-60 (63)
413 PRK10361 DNA recombination pro 22.5 1.3E+03 0.027 26.9 21.2 114 379-492 62-181 (475)
414 PF05529 Bap31: B-cell recepto 22.2 6.9E+02 0.015 24.4 9.3 31 200-230 158-188 (192)
415 PRK00295 hypothetical protein; 22.0 4.6E+02 0.0099 22.5 7.1 8 182-189 19-26 (68)
416 KOG1760 Molecular chaperone Pr 22.0 1.8E+02 0.0039 28.4 5.1 40 400-439 79-118 (131)
417 PF10805 DUF2730: Protein of u 21.9 3.9E+02 0.0085 24.4 7.1 43 170-212 44-88 (106)
418 PF07061 Swi5: Swi5; InterPro 21.9 4.9E+02 0.011 23.3 7.5 69 108-176 4-76 (83)
419 PF06009 Laminin_II: Laminin D 21.6 31 0.00067 32.4 0.0 71 157-227 13-86 (138)
420 PF06005 DUF904: Protein of un 21.5 5.5E+02 0.012 22.4 10.1 53 158-210 15-67 (72)
421 PF10828 DUF2570: Protein of u 21.5 5E+02 0.011 23.7 7.7 66 531-596 14-79 (110)
422 cd07651 F-BAR_PombeCdc15_like 21.5 8.4E+02 0.018 24.5 17.9 120 265-391 19-142 (236)
423 KOG1962 B-cell receptor-associ 21.3 5E+02 0.011 27.2 8.4 61 175-235 151-211 (216)
424 PRK00846 hypothetical protein; 21.3 5.5E+02 0.012 23.0 7.6 53 127-190 4-56 (77)
425 PRK09841 cryptic autophosphory 21.1 1.2E+03 0.027 27.6 12.6 148 220-368 256-403 (726)
426 PRK14146 heat shock protein Gr 21.0 9.4E+02 0.02 24.9 10.8 64 379-442 56-120 (215)
427 COG1382 GimC Prefoldin, chaper 21.0 7.6E+02 0.016 23.8 9.8 91 493-602 13-109 (119)
428 PF15450 DUF4631: Domain of un 20.8 1.4E+03 0.031 27.0 35.9 121 344-466 310-441 (531)
429 COG3524 KpsE Capsule polysacch 20.7 1.2E+03 0.027 26.2 12.4 139 145-283 177-321 (372)
430 KOG4657 Uncharacterized conser 20.7 1.1E+03 0.023 25.4 13.5 113 298-421 25-137 (246)
431 PF07246 Phlebovirus_NSM: Phle 20.7 1.4E+02 0.003 32.0 4.5 48 573-620 198-245 (264)
432 PLN02917 CMP-KDO synthetase 20.6 62 0.0013 33.9 1.9 12 17-28 1-12 (293)
433 PF04799 Fzo_mitofusin: fzo-li 20.6 3.1E+02 0.0066 27.8 6.6 55 336-390 110-164 (171)
434 TIGR02894 DNA_bind_RsfA transc 20.5 3.1E+02 0.0068 27.6 6.6 51 365-415 92-142 (161)
435 PF13747 DUF4164: Domain of un 20.5 6.3E+02 0.014 22.7 11.2 55 115-169 5-61 (89)
436 PF09753 Use1: Membrane fusion 20.5 9.3E+02 0.02 24.7 11.7 46 379-424 151-196 (251)
437 PRK15396 murein lipoprotein; P 20.5 4.2E+02 0.0091 23.7 6.7 45 162-206 26-70 (78)
438 PRK14160 heat shock protein Gr 20.4 9.8E+02 0.021 24.9 12.9 72 372-443 56-128 (211)
439 KOG4603 TBP-1 interacting prot 20.4 3.6E+02 0.0078 27.9 7.0 114 91-246 25-145 (201)
440 cd07617 BAR_Endophilin_B2 The 20.2 1E+03 0.022 25.0 12.6 109 132-248 89-200 (220)
441 KOG2629 Peroxisomal membrane a 20.1 9.3E+02 0.02 26.6 10.4 53 119-171 119-171 (300)
442 KOG3758 Uncharacterized conser 20.1 1E+03 0.023 28.7 11.5 97 127-234 51-147 (655)
443 KOG0979 Structural maintenance 20.0 1.9E+03 0.041 28.1 25.0 161 335-507 725-898 (1072)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.47 E-value=2.3e-07 Score=104.91 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHh
Q 036820 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESR 569 (651)
Q Consensus 490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAq 569 (651)
.+..++..+..++..-....+.++..+++....+.++....-.+...++.....+..+.++...+...+..-...-.+++
T Consensus 814 ~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 893 (1179)
T TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333334444455555555555555554455555555566666666666666666666555555666
Q ss_pred hchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccc
Q 036820 570 ENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN 615 (651)
Q Consensus 570 eN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ 615 (651)
..+.++..-+..+..+...+......++.+++.+..++=.++.++.
T Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666555555444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.46 E-value=6.8e-08 Score=118.19 Aligned_cols=256 Identities=21% Similarity=0.315 Sum_probs=182.8
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820 337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 337 Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~ 416 (651)
...++..++++++-|+.|......|-+.+ ...+.++-.|-+++++...--..|..++++...+....+--+..
T Consensus 1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l-------~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~ 1368 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENAL-------RQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE 1368 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555554433 34455566677777777777777777777777777776665554
Q ss_pred chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 036820 417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ 496 (651)
Q Consensus 417 ~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~ 496 (651)
.+.. ..+-+-.+--..-+-+...++.++.+..--++.-..+..|+-|+-| ..-++-+=+.+++.|++.+.
T Consensus 1369 ~~~~---~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d-------~~~d~~~~~~~~~~le~k~k 1438 (1930)
T KOG0161|consen 1369 EVLQ---RLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED-------LQLDLERSRAAVAALEKKQK 1438 (1930)
T ss_pred HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4332 1111111111222223333344444444444444455555555544 44556566778999999999
Q ss_pred HHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820 497 ALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH 576 (651)
Q Consensus 497 al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~ 576 (651)
...+.+.-.+.-.-.|...+|.|...+-.-.+..+.|...|+.+.-.+..++.|..-|+.-+.+-+..-.++..|+..-+
T Consensus 1439 ~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~ele 1518 (1930)
T KOG0161|consen 1439 RFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELE 1518 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHhhhhhHHHHhhcccchhh
Q 036820 577 NLVMRLGQERKSLDKRSKKLEEELASAKGEILR 609 (651)
Q Consensus 577 nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLr 609 (651)
-...+++.|.+-+.....-+|.+|-.+..-++|
T Consensus 1519 k~~r~le~e~~elQ~aLeElE~~le~eE~~~lr 1551 (1930)
T KOG0161|consen 1519 KEKRRLEQEKEELQAALEELEAALEAEEDKKLR 1551 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 999999999888888888888888777777766
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.44 E-value=3e-07 Score=104.05 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 036820 112 TLEYMKARLKEKEAAIVSL-EKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEEL 187 (651)
Q Consensus 112 tiesm~~kL~e~Eaa~~~l-DedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdl 187 (651)
.+..+..++.+-+..|... ..+....|...+.++..+-.. ....-..+-.++..++..+..+...+. .++.+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~----~l~~l 256 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE----ELETL 256 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 4444444444444444442 244555555555555555522 233333444444444444433333322 22333
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820 188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232 (651)
Q Consensus 188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e 232 (651)
...+..+...+...+..+..+..++.+.-+.+..++.++.-|..+
T Consensus 257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~ 301 (880)
T PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.41 E-value=5.5e-07 Score=101.97 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=78.6
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 036820 115 YMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSL 194 (651)
Q Consensus 115 sm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql 194 (651)
.+..++.+...++..+...+...+..++..+... ..+.+..+|..++..+..+...+.........+..++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 166 EYRERASDARLGVERVLSDQRGSLDQLKAQIEEK------EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544555556666666665555544441 2345566666666666666666666666665555555555
Q ss_pred HhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhh
Q 036820 195 QTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNAR 269 (651)
Q Consensus 195 ~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~ 269 (651)
...+........ .+..=-+.+..++.+|.-+...+...+..|.++...+...+.++..|....... .|+.+
T Consensus 240 ~~~~~el~~~~~----~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~ 315 (880)
T PRK02224 240 DEVLEEHEERRE----ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR 315 (880)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 444332222211 111111233334444444444444444444444444444444444443322221 33334
Q ss_pred hhhhHhcccchHHHHHHHHHHHHHh
Q 036820 270 ASSLLVERDDSKQKLEAVQKEYKEL 294 (651)
Q Consensus 270 v~sL~~ek~~~~~k~~~l~key~~l 294 (651)
...|-....+....++.+..+|..+
T Consensus 316 ~~~l~~k~~el~~~l~~~~~~l~~~ 340 (880)
T PRK02224 316 REELEDRDEELRDRLEECRVAAQAH 340 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.38 E-value=1.3e-06 Score=98.83 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhH
Q 036820 485 KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSL 558 (651)
Q Consensus 485 kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl 558 (651)
..-+..+..+++.+.+++..-.+....++.+++.+...+.++....-.|-.++......+..++.+..-+...+
T Consensus 823 ~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 896 (1179)
T TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444444444444444444444443333333333333333333333333333333
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.1e-06 Score=104.78 Aligned_cols=444 Identities=16% Similarity=0.230 Sum_probs=245.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 174 GKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 174 ~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
.+.+.....-+.+++..+..+...+...+.....++.+|..+-..++...++|. -.-++.+-++.+..+...+.....+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~~~ 654 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSSKQ 654 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666666666666666666666777666 1114444444555555555444433
Q ss_pred hhhhH---hhhhhh------------------------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch--
Q 036820 254 LKNLN---SVYKQN------------------------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSS-- 298 (651)
Q Consensus 254 ~~nL~---~~y~qt------------------------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss-- 298 (651)
+..+. -+|..- +|...+.++-.........++.+.+.|..|..-.
T Consensus 655 ~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~ 734 (1311)
T TIGR00606 655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG 734 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 32222 333322 3344444443345556666667777777766552
Q ss_pred -hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHh------hhhhhhhHHHHHhhHH-
Q 036820 299 -ENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE------LGNVKNLKYELQITQE- 370 (651)
Q Consensus 299 -E~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E------~~~~k~L~~~lq~Tqe- 370 (651)
+.--..-.+-+.+.+.++++++..+..+-++..+-...+..+..+++.+..|+... ...+..++..|.....
T Consensus 735 ~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~ 814 (1311)
T TIGR00606 735 RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814 (1311)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111212234666777777777777777776666666666666666665443332 1111112211111111
Q ss_pred --------HHHhhhhhhhHHHHHHHHH-------HhhhhHHHHHHHHH-------HHHHHHHHHHHhcchHHHHhhhhhh
Q 036820 371 --------TLETTRNEASDLEKQLKQS-------KDSCADLETEISRI-------RAEFAEVKHTLGNSLDEAKRSGEVL 428 (651)
Q Consensus 371 --------~L~~sR~e~s~L~~~L~~~-------~~~~~~L~~qiskl-------~~E~~e~ke~l~~~l~eak~~~~~L 428 (651)
++.....++..+..+++.+ .....++..+|..| ..+-....+.++ .....+..-+.|
T Consensus 815 l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el 893 (1311)
T TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVEL 893 (1311)
T ss_pred hccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1122233333333333333 33333444444444 222222233333 233334444455
Q ss_pred hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 036820 429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEA 508 (651)
Q Consensus 429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~Ea 508 (651)
..++....+-++....++......+......++.+....=..+.++....+.+...-.-+..+|.+++....-- -++.
T Consensus 894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~q 971 (1311)
T TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDY 971 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHH
Confidence 66666666666666777777777777777777777777777777777777777777777777777776654322 1122
Q ss_pred hHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHH--HhhhHHHhhchH--HHHHH---HHH
Q 036820 509 RKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQ--KSIANESRENME--DAHNL---VMR 581 (651)
Q Consensus 509 Rk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eq--k~~t~EAqeN~e--DA~nl---i~~ 581 (651)
=..++..|.....+++++..---.+..++......|..+..++.-+..-|.-= ++.-.+-...+. |.++. +..
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34566677777777777777777777777777777777777777776666544 333333333333 22222 234
Q ss_pred hhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820 582 LGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 582 Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
+..|+..+..+.-.|--.-|.+-|++-+|..||..-...-
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555566667799999998888766554
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=1.9e-06 Score=102.90 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=129.8
Q ss_pred hhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhh--hhhHhHHHH
Q 036820 239 GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAK--RLREKKEEL 316 (651)
Q Consensus 239 ~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~--lL~eke~~l 316 (651)
.+..+-..+..-+..|..+..-+....++.++.....+..+.+.+++.|..+...+...++.+|-.|.. =+..|...|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 551 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQI 551 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666668999999999999999999999999999999999999999975 457778888
Q ss_pred HHHHHHHHHHHhHhhh--chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 317 HQLKEKLELTLDEACE--NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 317 ~qLeekl~~Al~e~~k--~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
+.+....+..+...-+ +.. ..|.+.++..+.-++.==..+..+..+++..+-.+...|.+...+..+|+.....+.
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 552 RKIKSRHSDELTSLLGYFPNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777776666665432 111 556777777777777666777778888888888888888888888888886665554
Q ss_pred H------HHHHHHHHHHHHHHHH----------HHHhcchHHH
Q 036820 395 D------LETEISRIRAEFAEVK----------HTLGNSLDEA 421 (651)
Q Consensus 395 ~------L~~qiskl~~E~~e~k----------e~l~~~l~ea 421 (651)
+ .+.-+..+..++..+. ..+..-|+.|
T Consensus 630 ~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a 672 (1311)
T TIGR00606 630 DVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQL 672 (1311)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3334555555555555 5555556655
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.26 E-value=1.3e-05 Score=91.65 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=15.9
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKL 296 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ 296 (651)
.++.++..+..+..+...++..+..+|..++.
T Consensus 466 ~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~ 497 (1164)
T TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555443
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.24 E-value=9e-06 Score=100.28 Aligned_cols=436 Identities=24% Similarity=0.312 Sum_probs=281.7
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------------HHhHHHhHHHHHHHHHHHHhHHHH
Q 036820 107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-------------KSAKEEQQLLMNKLNSANTTISGL 173 (651)
Q Consensus 107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-------------Kk~kEeeQSLlDQLnSLnsTLtSL 173 (651)
..+...+..|+.+.++.|.....+...=..-..+++.+..... ..+...=.-+.+++.........+
T Consensus 848 ~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~l 927 (1930)
T KOG0161|consen 848 QKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAEL 927 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777766665544333333333322221 112333344556666666666677
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 174 GKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 174 ~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
....+.+..-+++++..++.....+.+++..+..++.+++.==+.|..+.+.|+-|+.+-+..|+.++.+.+-|...|..
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhHhh---hhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch----hhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820 254 LKNLNSV---YKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSS----ENETASNAKRLREKKEELHQLKEKLE 324 (651)
Q Consensus 254 ~~nL~~~---y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss----E~~aa~da~lL~eke~~l~qLeekl~ 324 (651)
.+.|+-. |.++ ++...+..=...+.+.++....+.-+-.++.-+- ..+.-.+.. |..++.+++++..+++
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~-l~kke~El~~l~~k~e 1086 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ-LKKKESELSQLQSKLE 1086 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 8877654 3333 4443333323333333333333332222222211 123333333 4778888898888888
Q ss_pred HHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHH---------------
Q 036820 325 LTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQS--------------- 389 (651)
Q Consensus 325 ~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~--------------- 389 (651)
.=-.+..+-+-.|-+|...+.++...|+.|=..+.++.-. ..+...++.+|.++|++.
T Consensus 1087 ~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~-------r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e 1159 (1930)
T KOG0161|consen 1087 DEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ-------RRDLSEELEELKEELEEQGGTTAAQLELNKKRE 1159 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8777777777777777777777777777766655555433 334444444444444444
Q ss_pred ---HhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHH
Q 036820 390 ---KDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE 466 (651)
Q Consensus 390 ---~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kE 466 (651)
..+..+|+.+.+.......+++......+.+ ...-.+.+-..|-.|.|-+..|+.-..+|..-++.+++...+
T Consensus 1160 ~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e----l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~ 1235 (1930)
T KOG0161|consen 1160 AEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE----LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKD 1235 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2233333333333333333333333222222 222345666777788888899999999999999999988888
Q ss_pred HHHHHHHhHhhHHHHHHHHHH------------------HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhh
Q 036820 467 LVNIYKKAEATANDLKEQKEI------------------VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNR 528 (651)
Q Consensus 467 L~d~YKK~E~t~~eL~~ekki------------------v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~ 528 (651)
+-..-|++|....||...=.- +.-|++.|+..+.++..-......+...|++...=++++.|
T Consensus 1236 ~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r 1315 (1930)
T KOG0161|consen 1236 LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETR 1315 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889989776666432111 22345555555555566666777888999999999999999
Q ss_pred hHHHHhHHHhhhhhccccchhHHHHHHHhHHHH
Q 036820 529 NALELSKNLEKANSQISNLEDEKAVLYKSLTEQ 561 (651)
Q Consensus 529 ~~~~LS~~Le~ans~issle~eKevL~ksl~eq 561 (651)
.-..|+..+-. ++.|+..|.+.+.+.
T Consensus 1316 ~k~~l~~~l~~-------l~~e~~~l~e~leee 1341 (1930)
T KOG0161|consen 1316 EKSALENALRQ-------LEHELDLLREQLEEE 1341 (1930)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 88888776544 444455544444443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.22 E-value=5e-06 Score=98.34 Aligned_cols=186 Identities=28% Similarity=0.374 Sum_probs=141.5
Q ss_pred chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 036820 417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ 496 (651)
Q Consensus 417 ~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~ 496 (651)
.+++....-..+..++..+.+.+.+-+++++..........+.++.++.++-++=..+.....++.....-...|..+++
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 831 (1163)
T COG1196 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555666666666666666666666666666777777777777766666666777777777788888999
Q ss_pred HHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820 497 ALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH 576 (651)
Q Consensus 497 al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~ 576 (651)
.+..++..=.+....|...+++.+..+.++......+-.+...++..+..++++++.+.+-+.+....-.+....++++.
T Consensus 832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 911 (1163)
T COG1196 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888899999999999999999888888999999999999999999999999998888888888888888
Q ss_pred HHHHHhhhhhhhhhHhhhhhHHHHhh
Q 036820 577 NLVMRLGQERKSLDKRSKKLEEELAS 602 (651)
Q Consensus 577 nli~~Lg~ERE~~e~r~kkLEeELAs 602 (651)
.-+..|...-..++-....+++++-.
T Consensus 912 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 937 (1163)
T COG1196 912 ERLEELEAKLERLEVELPELEEELEE 937 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88877766665666555555555443
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=2.9e-05 Score=87.80 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=18.0
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhh
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLKEK 123 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~ 123 (651)
+.+.+-.+|.-+..-.+.+..+|..++..+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 188 (880)
T PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRT 188 (880)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555556666666666655443
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.15 E-value=4.5e-05 Score=87.35 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=52.1
Q ss_pred hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Q 036820 431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK 510 (651)
Q Consensus 431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk 510 (651)
++..+++-+.+.+.++.....++.........++.++-..-+.++....++..=..-+..+..+++.+..++..-.+...
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 878 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333333333332222222233344444444444444444444
Q ss_pred hHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHH
Q 036820 511 SLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA 552 (651)
Q Consensus 511 ~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKe 552 (651)
.++..+++....++++....-.+.++++.....+..++...+
T Consensus 879 ~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 920 (1164)
T TIGR02169 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443333
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=5.6e-05 Score=85.60 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=31.6
Q ss_pred HhHHHhhhhhccccchhHHHHHHHhHHHHH-----hhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhc
Q 036820 533 LSKNLEKANSQISNLEDEKAVLYKSLTEQK-----SIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASA 603 (651)
Q Consensus 533 LS~~Le~ans~issle~eKevL~ksl~eqk-----~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsA 603 (651)
+-.+|+..+..|+.++.+.+-|...+.+-. ..-...++.++.+..=+..+..+.+.++.+...|++++...
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333332 22233333444444444444555555555555555544444
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.90 E-value=0.00036 Score=85.94 Aligned_cols=460 Identities=22% Similarity=0.304 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH----
Q 036820 134 FESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE---- 209 (651)
Q Consensus 134 FEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae---- 209 (651)
|+.+|.+.+.+..-...-.-.....|..+++++...++.+...+.++.....=+..++..+..+|.....-++.++
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555444333444555555555555555555555554444444444444444444443333333222
Q ss_pred -----------------HHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh--hhhhhhhh
Q 036820 210 -----------------EERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK--QNELNARA 270 (651)
Q Consensus 210 -----------------~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~--qt~Ln~~v 270 (651)
.+|.-==.-+.+|..-|+-|.+|-.---..-.+|...+..-..++..|+.+.+ ||-.|..-
T Consensus 714 ~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e 793 (1822)
T KOG4674|consen 714 NLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELE 793 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111122222222222222221111122333344444445555554333 44666666
Q ss_pred hhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHH
Q 036820 271 SSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM 350 (651)
Q Consensus 271 ~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m 350 (651)
.+....++..+.+|..|.-+...||.. |.++...+|.|...++.-|.++. -.|.++..+++.+.+-
T Consensus 794 ~s~~~~k~~~e~~i~eL~~el~~lk~k-----------lq~~~~~~r~l~~~~~~~l~~~~---~~i~~~~~~~~~~~~~ 859 (1822)
T KOG4674|consen 794 ESEMATKDKCESRIKELERELQKLKKK-----------LQEKSSDLRELTNSLEKQLENAQ---NLVDELESELKSLLTS 859 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 677777777888888888888777754 56777777777777776665553 2344444444444433
Q ss_pred HHHhhhhhhhhH-------HHHHhhHHHHHhhh---------hhhhHHHHHHHHHHhhhhHH---HHHHHHHHHHH----
Q 036820 351 LDNELGNVKNLK-------YELQITQETLETTR---------NEASDLEKQLKQSKDSCADL---ETEISRIRAEF---- 407 (651)
Q Consensus 351 Ld~E~~~~k~L~-------~~lq~Tqe~L~~sR---------~e~s~L~~~L~~~~~~~~~L---~~qiskl~~E~---- 407 (651)
|++=-.++..|. -.|+++..-....- --...|...+.++.++-..| ..+|+.+++.+
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e 939 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE 939 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222 22222221111111 11122333344442222222 22333333333
Q ss_pred ---HHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHH
Q 036820 408 ---AEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ 484 (651)
Q Consensus 408 ---~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~e 484 (651)
..|+..|..-..+...--+-+..+++++.+=+-.-+.++...+.++....+ +..++++|.-+.+.+..+|++.=
T Consensus 940 qsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k---~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen 940 QSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTK---GKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHhHHHHHHHHHH
Confidence 333333333334444555566777777775544444444444444433221 23344555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHhhh------------------hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHh--------
Q 036820 485 KEIVSSLNKELQALEKQTSK------------------DKEARKSLETDLEEATKSLDEMNRNALELSKNLE-------- 538 (651)
Q Consensus 485 kkiv~tLn~eL~al~~Q~~~------------------d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le-------- 538 (651)
.++...-|+-+.-+..++.. -.+.+..|..==++. ..||.-..-|-...+
T Consensus 1017 ~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~----~~~~~e~~~Lk~~~~~~~~~l~e 1092 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEF----AKCNDELLKLKKSRESRHALLSE 1092 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHhHHhh
Confidence 44444444444433333322 222222222211222 223333333333333
Q ss_pred -----------------hhhhccccchhHHHHHHHhHHHHHhhhHH-----HhhchHHHHHHHHHhhhhhhhhhHhhhhh
Q 036820 539 -----------------KANSQISNLEDEKAVLYKSLTEQKSIANE-----SRENMEDAHNLVMRLGQERKSLDKRSKKL 596 (651)
Q Consensus 539 -----------------~ans~issle~eKevL~ksl~eqk~~t~E-----AqeN~eDA~nli~~Lg~ERE~~e~r~kkL 596 (651)
..+.+|..|+..--.|+--+.+=-....+ ..+-.+|-+|+|..|-+||+-++.
T Consensus 1093 ~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~t----- 1167 (1822)
T KOG4674|consen 1093 QERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAET----- 1167 (1822)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhh-----
Confidence 33333333333333333222211111110 001145559999999999998765
Q ss_pred HHHHhhcccchhhhhhccccccCcc
Q 036820 597 EEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 597 EeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
++-.++-|.+|||+|+.++...+
T Consensus 1168 --k~~~lk~e~~~L~qq~~~~~k~i 1190 (1822)
T KOG4674|consen 1168 --KLDTLKRENARLKQQVASLNRTI 1190 (1822)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998865444
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.88 E-value=0.00066 Score=80.91 Aligned_cols=194 Identities=30% Similarity=0.435 Sum_probs=104.0
Q ss_pred cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 036820 416 NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495 (651)
Q Consensus 416 ~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL 495 (651)
+.+.+.+.--..+..+++....-++..+..++....++....+..+.+++++-.+.-.+......+ ..|+.++
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~l~~~~ 781 (1163)
T COG1196 709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL-------AKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 334444444455555555556666666666666666666666666666655554444333333222 3444444
Q ss_pred HHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhh--------------hhHHHHhHHHhhhhhccccchhHHHHHHHhHHHH
Q 036820 496 QALEKQTSKDKEARKSLETDLEEATKSLDEMN--------------RNALELSKNLEKANSQISNLEDEKAVLYKSLTEQ 561 (651)
Q Consensus 496 ~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn--------------~~~~~LS~~Le~ans~issle~eKevL~ksl~eq 561 (651)
+.+......-.+.+..++..+..+-.=++.+. .-.-.+-.+...+...+..++.+-..+...+.+.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 861 (1163)
T COG1196 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44443333333444444443333321111111 1111112223333334444444444555555555
Q ss_pred HhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820 562 KSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616 (651)
Q Consensus 562 k~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s 616 (651)
+..-.+++..+.+...-+..+-.+++.++.....++.++...+=+|-+++..++.
T Consensus 862 ~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777777777777788888888888888888888888777777765
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.85 E-value=0.00089 Score=82.71 Aligned_cols=435 Identities=18% Similarity=0.227 Sum_probs=254.3
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-------HHHhHHHHHHHHHHHHhHHHHHH
Q 036820 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSA-------KEEQQLLMNKLNSANTTISGLGK 175 (651)
Q Consensus 103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~-------kEeeQSLlDQLnSLnsTLtSL~k 175 (651)
-.|+.-++.++..|.+-..+.|.........|+.++...+..+..|-+++ .+....+.-+|..+.++|..+..
T Consensus 772 ~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~ 851 (1822)
T KOG4674|consen 772 SAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES 851 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999999999998888887776332 33333334444444444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH------------HHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE------------RKQKLDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e------------LeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
.+.++...+......|..+.+.+...+.-+...... ..-..+.+....++|+-|-..+++-..+|+++
T Consensus 852 ~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~y 931 (1822)
T KOG4674|consen 852 ELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREY 931 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333322221 11223344455555655666666666666666
Q ss_pred hhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHH
Q 036820 244 SSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKE 321 (651)
Q Consensus 244 ~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLee 321 (651)
-.-...-|.-+...++.|+++ ++=.++..+..+....+.+|++|.++..+|..-.+.- ...+++++-.+-.
T Consensus 932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~-------~k~~e~~~~~~~~ 1004 (1822)
T KOG4674|consen 932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELS-------TKGKEDKLLDLSR 1004 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccchhhhHHHHHH
Confidence 666566666666677777777 6667788888889999999999999998887433221 1234555555666
Q ss_pred HHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHH-------HhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 322 KLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYEL-------QITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 322 kl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~l-------q~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
+++.+.++...-..+|-+-+.-..+++.=|+-+...+....... .-+-.+|.+.|.++++.-.++...+....
T Consensus 1005 e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~ 1084 (1822)
T KOG4674|consen 1005 EISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRE 1084 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666666666666666666655544443322 23456677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh--hhH---HHHHHHHhhhhhhHHHHH
Q 036820 395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN--VSH---ELEATAENRDSLRKELVN 469 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~--~S~---eL~~~~e~rd~L~kEL~d 469 (651)
.+....+.+-.-|.|-+..|..-+...+.-...|-...-..-+.+...-.-..+ .|. .+--...----|.+|..=
T Consensus 1085 ~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei 1164 (1822)
T KOG4674|consen 1085 SRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEI 1164 (1822)
T ss_pred HHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHH
Confidence 888888888888888888888877777666655555444443333322221110 000 000011111123444444
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHhHhHH--HhHHHHhhhHHHhh---hhHHHHhHHHhhhhhc
Q 036820 470 IYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDK-EARKSLE--TDLEEATKSLDEMN---RNALELSKNLEKANSQ 543 (651)
Q Consensus 470 ~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~-EaRk~Le--~dLeeaT~SldEmn---~~~~~LS~~Le~ans~ 543 (651)
+=-|++.+-.|...=+.-|+++|+.++-|.--+.... ..+.+.. ...++-++-..+|| .+-.+|=++++.-..+
T Consensus 1165 ~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k 1244 (1822)
T KOG4674|consen 1165 AETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEK 1244 (1822)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4456666666666666667777777666654333222 1222222 22344555555666 5555555544444444
Q ss_pred c
Q 036820 544 I 544 (651)
Q Consensus 544 i 544 (651)
|
T Consensus 1245 ~ 1245 (1822)
T KOG4674|consen 1245 I 1245 (1822)
T ss_pred H
Confidence 3
No 17
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.83 E-value=0.00041 Score=76.58 Aligned_cols=364 Identities=25% Similarity=0.328 Sum_probs=230.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e 232 (651)
+++=.-+-.+|......=..+.++|...+.+|++++.+++.+...-..+..+.+.+.-.+++ +.+.
T Consensus 40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e--------------~e~~ 105 (522)
T PF05701_consen 40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKE--------------LEQG 105 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH--------------Hhhh
Confidence 33344455667777777778888899999999999999998888877777776665544432 1122
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHh
Q 036820 233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREK 312 (651)
Q Consensus 233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~ek 312 (651)
+-+....+ ...++.+-..-| ...+.+-+...++|..+.++|..+- .+|
T Consensus 106 ~~~~~~~~---------~k~ele~~~~q~---------~~~~~eL~~~k~EL~~lr~e~~~~~--------------~~k 153 (522)
T PF05701_consen 106 IAEEASVA---------WKAELESAREQY---------ASAVAELDSVKQELEKLRQELASAL--------------DAK 153 (522)
T ss_pred hcccchHH---------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 22211111 112222333333 3344455567778888999987642 234
Q ss_pred HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHh-hhhhhhhH----------HHHHhhHHHHHhhhhhhhH
Q 036820 313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE-LGNVKNLK----------YELQITQETLETTRNEASD 381 (651)
Q Consensus 313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E-~~~~k~L~----------~~lq~Tqe~L~~sR~e~s~ 381 (651)
+.-+.+- ..|...+..+...+.+|+.|+..++.-|+-- +..+..-+ .....-+..|.....++..
T Consensus 154 ~~A~~~a----eea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~ 229 (522)
T PF05701_consen 154 NAALKQA----EEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEE 229 (522)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 3355556667777888888888888877752 22222221 2234445557777777777
Q ss_pred HHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhcchH---HHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820 382 LEKQLKQSKDSCADLE---TEISRIRAEFAEVKHTLGNSLD---EAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~---~qiskl~~E~~e~ke~l~~~l~---eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~ 455 (651)
|..++...+.+..+|. ..|..|+.|+....+ .+++ +++.....+...|.+++.=|..++..|+.+-.++..
T Consensus 230 L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~---~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 230 LKEELEAAKDLESKLAEASAELESLQAELEAAKE---SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666 677777777777776 3333 366667777777899999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820 456 TAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK 535 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~ 535 (651)
..-.-++|+.||-.+=.-+..+.+....=.-.|..|+-+|..+...+-.-...-. ++-.-.++|+..--.++.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~-------~~k~~~~~l~~~Lqql~~ 379 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE-------KAKEAMSELPKALQQLSS 379 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc-------chhhhHHHHHHHHHHHHH
Confidence 9889999999998777777777776666666778888888877666533222222 222233444444445555
Q ss_pred HHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHH
Q 036820 536 NLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAH 576 (651)
Q Consensus 536 ~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~ 576 (651)
+.+.|+........|-..+..-+..-|-....++.-+.-|+
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555555555555555555555555555555444
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.78 E-value=0.00039 Score=80.46 Aligned_cols=131 Identities=22% Similarity=0.335 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh
Q 036820 183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK 262 (651)
Q Consensus 183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~ 262 (651)
..--.+.+++++...|.....-+..++.+|+..-+.-...+..|..|-.++..|+.+..-|-+..-....+|..=+.+++
T Consensus 281 ~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 281 HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666677777776666666667777777777777777666666655555555555555554
Q ss_pred hh------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820 263 QN------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLE 324 (651)
Q Consensus 263 qt------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~ 324 (651)
+- -+...|.-|.-.-+-...+|+.|++.|-.|- +.|.+|+.++..+.+.|.
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le-----------e~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE-----------EQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHh
Confidence 43 2333344455555555667777777765442 456788888888888877
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=98.78 E-value=0.001 Score=76.54 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=35.1
Q ss_pred HHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHh---HHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhH
Q 036820 517 EEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKS---LTEQKSIANESRENMEDAHNLVMRLGQERKSLDK 591 (651)
Q Consensus 517 eeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ks---l~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~ 591 (651)
...-..+.+++...--+.++++..+..+..++.+.+.+..- +.+....-..+.+.++.-...+..|..-|.-|+.
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l~~~r~~l~k 747 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAFDK 747 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444555555555555555555555555555555443 3333333333333333333344445555555554
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.0011 Score=76.36 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=11.4
Q ss_pred hhhhHHHHHhhHHHHHhhhhhhhHHHH
Q 036820 358 VKNLKYELQITQETLETTRNEASDLEK 384 (651)
Q Consensus 358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~ 384 (651)
.+.|...+......+...-.+...+..
T Consensus 365 ~~~l~~~l~~~~~~~~~~~~~~~~l~~ 391 (895)
T PRK01156 365 YNSYLKSIESLKKKIEEYSKNIERMSA 391 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 334444444444444444444444433
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.72 E-value=2e-09 Score=123.56 Aligned_cols=487 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820 123 KEAAIVSLEKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199 (651)
Q Consensus 123 ~Eaa~~~lDedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs 199 (651)
.|++|..|.+.|-+-+-+...++..+-+. +--..+.|-..++++...|..+.+.-.+....+-.+..++..+...+.
T Consensus 118 ~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~kle 197 (859)
T PF01576_consen 118 HEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLE 197 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 45666666666666666666555555411 122233444444444444444444444333333333333333333333
Q ss_pred hhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh---------------
Q 036820 200 KFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--------------- 264 (651)
Q Consensus 200 qAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--------------- 264 (651)
.++..+..+. ....-|+..++=|+..+.+.+..+..++..-+.-+.++..+..-++.-
T Consensus 198 e~er~~~el~-------~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le 270 (859)
T PF01576_consen 198 ESERQRNELT-------EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLE 270 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHH
Confidence 2222222111 112233333444444444444444444433333333333333333222
Q ss_pred ----hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhH----hHHHHHHHHHHHHHHHhHhhhchhH
Q 036820 265 ----ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLRE----KKEELHQLKEKLELTLDEACENRAT 336 (651)
Q Consensus 265 ----~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~e----ke~~l~qLeekl~~Al~e~~k~~~~ 336 (651)
.|+..+..-...+.++...|..+.-+..+++.-.|.-+....+-|-+ -...|..+.+.+..+-.....-.-.
T Consensus 271 ~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~ 350 (859)
T PF01576_consen 271 HELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKT 350 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333334455555566666667777777777666664444332 2456677777777777776666666
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820 337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 337 Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~ 416 (651)
..-|+.|++|+.--|+..-..+..|-.-.......|...+..+..+..+++.+..-|..+.++|-+|..++.+.++.
T Consensus 351 k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~--- 427 (859)
T PF01576_consen 351 KKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQ--- 427 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH---
Confidence 77799999999988888888887777777777778888899999999999999999999999999999998776654
Q ss_pred chHHHHhhhhhhhhhHHhHHHHH----------HHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHH--
Q 036820 417 SLDEAKRSGEVLAGELFAAKEVL----------KKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQ-- 484 (651)
Q Consensus 417 ~l~eak~~~~~Ls~El~s~ke~l----------~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~e-- 484 (651)
++..+...+.|.+||.-+...+ .|++-.|+.--.+|....+.-.+--...-+.+..++...+.++.+
T Consensus 428 -~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 428 -LEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE 506 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888887665543 344444444444444444333333333445566666666655554
Q ss_pred HHH----------HHHHHHHHHHHHHHhhh-------hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccc
Q 036820 485 KEI----------VSSLNKELQALEKQTSK-------DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNL 547 (651)
Q Consensus 485 kki----------v~tLn~eL~al~~Q~~~-------d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issl 547 (651)
|.| =..+.+.+..|+.++-. ---.+|-|+.|+.+....||.-|++.--+.+.+......|..+
T Consensus 507 r~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdl 586 (859)
T PF01576_consen 507 RELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDL 586 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 222 12344455555554422 2345688999999999999999999999999998888888876
Q ss_pred hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820 548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620 (651)
Q Consensus 548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~ 620 (651)
..+-+--..+..+.......+...+-..++=+..+...++..+.--|.+|-|+.-+.++|=-|-++.++.-..
T Consensus 587 q~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~ 659 (859)
T PF01576_consen 587 QRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEE 659 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 6555555555555555555555666666777778888888888888999999999998888887776665443
No 22
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.42 E-value=0.0065 Score=67.36 Aligned_cols=347 Identities=20% Similarity=0.284 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh---------
Q 036820 135 ESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG--------- 202 (651)
Q Consensus 135 EkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE--------- 202 (651)
+..|..+|+++.++-+. .-......++-|..++.++..+...|+........+....+-...++...+
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~ 112 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV 112 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence 34556666666665533 334455677788899999999999999877665555555554444444442
Q ss_pred ---hhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--------hhhhh--
Q 036820 203 ---EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--------ELNAR-- 269 (651)
Q Consensus 203 ---edkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--------~Ln~~-- 269 (651)
..++.++.....-+..++.-.+-+.-+.+|+ .+.+..|-.-++.--..-.-. +|+..
T Consensus 113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~----------~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~ 182 (522)
T PF05701_consen 113 AWKAELESAREQYASAVAELDSVKQELEKLRQEL----------ASALDAKNAALKQAEEAVSAAEENEEKVEELSKEII 182 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333333333333332 222222222222111111111 22222
Q ss_pred -----hhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhH---hhhchhHHHhhh
Q 036820 270 -----ASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDE---ACENRATIAKFT 341 (651)
Q Consensus 270 -----v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e---~~k~~~~Ia~L~ 341 (651)
+.+.-.+..++.++.-.+.-++......- -. -|.+.+..+.+|...++.+=+- ......-|..|.
T Consensus 183 ~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~------~~-~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq 255 (522)
T PF05701_consen 183 ALKESLESAKLAHIEAEEERIEIAAEREQDAEEW------EK-ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQ 255 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333333333332222222111 11 1456666666776666433221 112334555666
Q ss_pred hhHHHHHH-HHHHh---hhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036820 342 QEKDDLRK-MLDNE---LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNS 417 (651)
Q Consensus 342 ~e~~~~r~-mLd~E---~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~ 417 (651)
.|+...+. -++.+ -.....++..|.+...-|...+..+-+...++..++....-|..++-+...+++.+++ +
T Consensus 256 ~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke----~ 331 (522)
T PF05701_consen 256 AELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE----R 331 (522)
T ss_pred HHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 66555554 11111 1222333334555555555555555555555555566666666666666666666555 3
Q ss_pred hHHHHhhhhhhhhhHHhHHHHH-------HHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 036820 418 LDEAKRSGEVLAGELFAAKEVL-------KKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSS 490 (651)
Q Consensus 418 l~eak~~~~~Ls~El~s~ke~l-------~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~t 490 (651)
...+......|-.||..++--| .++.+.+..+...|-.++..-+..+++.-.+--.+.....+...=|-.+.|
T Consensus 332 e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 332 EKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444 444555555556665555555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHh
Q 036820 491 LNKELQALEKQT 502 (651)
Q Consensus 491 Ln~eL~al~~Q~ 502 (651)
.+..|++..+-+
T Consensus 412 ~E~rL~aa~ke~ 423 (522)
T PF05701_consen 412 AEERLEAALKEA 423 (522)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.41 E-value=0.0013 Score=73.68 Aligned_cols=172 Identities=23% Similarity=0.307 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHH--HHH
Q 036820 395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVN--IYK 472 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d--~YK 472 (651)
.+..++..+..++.-+ +..+...++.+..|+.||.++.-+..+|.-+|+..--+.+.+.-.-.....+|-. +++
T Consensus 280 ~~~~e~e~LkeqLr~~----qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~ 355 (546)
T PF07888_consen 280 QLQQENEALKEQLRSA----QEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQW 355 (546)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 4455667889999999999999999999999999988777776545555555544 344
Q ss_pred HhHhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH---HHhhhhhccccc
Q 036820 473 KAEATAN--DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK---NLEKANSQISNL 547 (651)
Q Consensus 473 K~E~t~~--eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~---~Le~ans~issl 547 (651)
--|.++- .-...|.=+..|+.|++-+++-+..+.-.|..|+.+|.... ..|-+-||. +|..-++.+--+
T Consensus 356 ~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~------D~n~vqlsE~~rel~Elks~lrv~ 429 (546)
T PF07888_consen 356 AQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK------DCNRVQLSENRRELQELKSSLRVA 429 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444442 22444556888999999999988888889999999996432 333344443 344444433333
Q ss_pred hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhh
Q 036820 548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQER 586 (651)
Q Consensus 548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ER 586 (651)
..||| +-..|.|+=|++.+-|=.|||+-=
T Consensus 430 qkEKE----------ql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 430 QKEKE----------QLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444 345689999999999999999863
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.34 E-value=0.014 Score=68.01 Aligned_cols=479 Identities=22% Similarity=0.299 Sum_probs=219.2
Q ss_pred hhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HhHHHhHHHH------HHH
Q 036820 93 GVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLK---SAKEEQQLLM------NKL 163 (651)
Q Consensus 93 Gvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLK---k~kEeeQSLl------DQL 163 (651)
.++-+=|-..+-|-..++.||..+..+| . .|.++..|.. ..+++...+. +++
T Consensus 56 ~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r------------------~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~ 116 (775)
T PF10174_consen 56 SRLKEQLRVTQEENQKAQEEIQALQEEL-R------------------AQRELNRLQQELEKAQYEFESLQELDKAQEQF 116 (775)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHH-H------------------HhhHHHHHHHHhhhcccccchhhhhhhHHHHH
Confidence 4444555555666666667776666666 2 3333333331 1222222222 233
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
..+..--..+..++...+.+++.+...++.++..+..+.+.++.+...|..|=-.-+.--+- +.....+-+.+..+..|
T Consensus 117 ~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~-~~~~~~~~~~e~~~~~l 195 (775)
T PF10174_consen 117 ERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED-NEALRRIREAEARIMRL 195 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh-hHHHHHHHHHHHHHHHH
Confidence 33333333334444444455555555555555555555555555444443221110000000 12233688899999999
Q ss_pred hhhhhhhHHHhhh----hHhhhhhhhhhh---hhhhhHhcccchHHH----HHHHHHHHHHhhhchhhhhhhhhhhhhHh
Q 036820 244 SSSLQQKETELKN----LNSVYKQNELNA---RASSLLVERDDSKQK----LEAVQKEYKELKLSSENETASNAKRLREK 312 (651)
Q Consensus 244 ~SsLa~KE~e~~n----L~~~y~qt~Ln~---~v~sL~~ek~~~~~k----~~~l~key~~lk~ssE~~aa~da~lL~ek 312 (651)
-+-|..++.++.- |+.-|....=++ .+++++-.|+....- |..++-+..-|+..-+.=. .++
T Consensus 196 e~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~-------~~r 268 (775)
T PF10174_consen 196 ESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSE-------ADR 268 (775)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------cch
Confidence 9999999999954 444443332122 245555555432222 2223444444443222111 123
Q ss_pred HHHHHHHHHHHHHHHhHhhhchhHHHhhhh-------hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh-------hh
Q 036820 313 KEELHQLKEKLELTLDEACENRATIAKFTQ-------EKDDLRKMLDNELGNVKNLKYELQITQETLETTR-------NE 378 (651)
Q Consensus 313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~-------e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR-------~e 378 (651)
+...++|+..-+.++-- |++ |..+.. |+.++.+-|++=-.....++.-|.+.++.|.... .+
T Consensus 269 ~~~~k~le~~~s~~~~m--K~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd 344 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAM--KSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD 344 (775)
T ss_pred HHHHHHHHHHHhhHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445554443333321 111 222222 2222222222222222233444444444444333 33
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT---LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~---l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~ 455 (651)
|..|...|++....+.+...+|.+++.|.+-++-- |...++-.+.--.+|=+.+-.+-+.|+.-...|...-.-|.+
T Consensus 345 ve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 345 VEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444445555555555544444444443332211 122233333333344444444444443222222211111110
Q ss_pred --HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHH
Q 036820 456 --TAENRDSLRKELVNIYKKAEATANDLKEQKEIVS-SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALE 532 (651)
Q Consensus 456 --~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~-tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~ 532 (651)
-+..-|.+...|=.+-.-.+.....|.+.|.-.. ....+++.+.+++..=+..-.+|+.+|.+.+-+|+.--.-+..
T Consensus 425 ~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~ 504 (775)
T PF10174_consen 425 QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASK 504 (775)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence 0000011222222222222333333322221111 2334556666666666666778999999999999998888888
Q ss_pred HhHHHhhhhhccccchhHHH-------HHHHhHHH-------------HHhhhHHHhhchHHHHHHHHH-------hhhh
Q 036820 533 LSKNLEKANSQISNLEDEKA-------VLYKSLTE-------------QKSIANESRENMEDAHNLVMR-------LGQE 585 (651)
Q Consensus 533 LS~~Le~ans~issle~eKe-------vL~ksl~e-------------qk~~t~EAqeN~eDA~nli~~-------Lg~E 585 (651)
|+...+...|+|.+++-+-+ =|...|.- =.+-+....+..+.|++=|-| +-+|
T Consensus 505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENE 584 (775)
T ss_pred HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777654321 11111111 000112233444555554444 4468
Q ss_pred hhhhhHhhhhhHHHHhh
Q 036820 586 RKSLDKRSKKLEEELAS 602 (651)
Q Consensus 586 RE~~e~r~kkLEeELAs 602 (651)
+.+.+++.+-|+.+|.-
T Consensus 585 K~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 585 KNDKEKKIGELEKELEK 601 (775)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 88888888888888643
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.29 E-value=0.0027 Score=64.25 Aligned_cols=289 Identities=19% Similarity=0.288 Sum_probs=148.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHH--------HHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820 126 AIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTIS--------GLGKELQNEKRFIEELRIEIDSLQTS 197 (651)
Q Consensus 126 a~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLt--------SL~keLqnek~tVEdlk~eIeql~ss 197 (651)
.|..|+.-|...+-.|. .+-..+..|-.+++.+..... ....++...+..|.++.....++...
T Consensus 5 eL~~LNdRla~YIekVr--------~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e 76 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVR--------FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE 76 (312)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh
Confidence 46666666665554443 234455666666666666621 13356667778888888888888888
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcc
Q 036820 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVER 277 (651)
Q Consensus 198 LsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek 277 (651)
+..+...++.++.++.+.......++.-|+-|..++.+---..-.|...+.....++.-+...|.+.
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE------------- 143 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE------------- 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh-------------
Confidence 8888888888888888887777777777776664444333333333333333333333333333331
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820 278 DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN 357 (651)
Q Consensus 278 ~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~ 357 (651)
+.+|..+.. -..+.+.+... .-.|..||.+.+.....+++-+++ ++......-+..
T Consensus 144 ------i~~L~~~~~-~~~~~e~~~~~---------------~~dL~~~L~eiR~~ye~~~~~~~~--e~e~~y~~k~~~ 199 (312)
T PF00038_consen 144 ------IEELREQIQ-SSVTVEVDQFR---------------SSDLSAALREIRAQYEEIAQKNRE--ELEEWYQSKLEE 199 (312)
T ss_dssp ------HHTTSTT--------------------------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ------hhhhhhccc-cccceeecccc---------------cccchhhhhhHHHHHHHHHhhhhh--hhhhhccccccc
Confidence 111111111 00111111111 111566666666555555544431 222222222222
Q ss_pred h----hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHH
Q 036820 358 V----KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELF 433 (651)
Q Consensus 358 ~----k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~ 433 (651)
+ ..-...+..+.+-+...|..+..|..+|+..+..+..|+.+|..+...+..-.+.++. .+.
T Consensus 200 l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~--------------~i~ 265 (312)
T PF00038_consen 200 LRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQA--------------EIA 265 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred ccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH--------------hhh
Confidence 1 1122333444444455555555555555555555555555555555444444433332 344
Q ss_pred hHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 434 AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 434 s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
....-+.+.+.+++....+....+...=+|..|+ .+|.|+
T Consensus 266 ~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI-atYR~L 305 (312)
T PF00038_consen 266 ELEEELAELREEMARQLREYQELLDVKLALDAEI-ATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence 5555566667777777777777777788888885 678775
No 26
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.011 Score=66.76 Aligned_cols=345 Identities=17% Similarity=0.195 Sum_probs=227.5
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH---HhHHHHHHHHHhHHHH
Q 036820 107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSAN---TTISGLGKELQNEKRF 183 (651)
Q Consensus 107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLn---sTLtSL~keLqnek~t 183 (651)
--.+.||.+-..=++.-+. .+.++++|..+|...-.-+....-..+.....|.+|++++. ..+.++++.-...++=
T Consensus 196 ~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D 274 (581)
T KOG0995|consen 196 LFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDD 274 (581)
T ss_pred HHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhH
Confidence 3446688888887777776 89999999999988777666666556667778888888765 3566677777777777
Q ss_pred HHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhh
Q 036820 184 IEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ 263 (651)
Q Consensus 184 VEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~q 263 (651)
+.....-..+..+.-..+...+..+..++++|-+.|+-||..+.=|--.|......+....--=++.+..-++|+.|-.+
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~ 354 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE 354 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777788888888899999999999999998888887777777666666655556666666666665444
Q ss_pred h-hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhc--------h---------hhhhh------------hhhhhhhHhH
Q 036820 264 N-ELNARASSLLVERDDSKQKLEAVQKEYKELKLS--------S---------ENETA------------SNAKRLREKK 313 (651)
Q Consensus 264 t-~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~s--------s---------E~~aa------------~da~lL~eke 313 (651)
- .|-.. +-..+.++..-..+|++.+.++... . ..+|+ +--+|+.+..
T Consensus 355 ~d~l~k~---vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~ 431 (581)
T KOG0995|consen 355 LDRLSKE---VWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEIS 431 (581)
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHH
Confidence 3 11111 1112223333344444444433221 1 11111 1236788999
Q ss_pred HHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhh-hhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh-
Q 036820 314 EELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVK-NLKYELQITQETLETTRNEASDLEKQLKQSKD- 391 (651)
Q Consensus 314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k-~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~- 391 (651)
.++|+-+.++..--...+.-..+|+++++.+..+. -|+..+. ......+.+++-..+.|.|.-.|+++|...+-
T Consensus 432 ~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~----~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~ 507 (581)
T KOG0995|consen 432 EELHEAENELETLQEHFSNKASTIEEKIQILGEIE----LELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLV 507 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888999888876653 3443333 33344577889999999999999999876543
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHH
Q 036820 392 ---SCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV 468 (651)
Q Consensus 392 ---~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~ 468 (651)
.-.+.+..|-.+.-|+.++..+..+....--.--..+-+.+...+..++..=|++.+ .+++|+-
T Consensus 508 ~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~-------------~~~~~~~ 574 (581)
T KOG0995|consen 508 LNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKA-------------DLHKECE 574 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 334445556666666666666666555544222223334555555555444444332 5666666
Q ss_pred HHHH
Q 036820 469 NIYK 472 (651)
Q Consensus 469 d~YK 472 (651)
++||
T Consensus 575 ei~~ 578 (581)
T KOG0995|consen 575 EIEK 578 (581)
T ss_pred HHHh
Confidence 6665
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.18 E-value=0.0018 Score=72.62 Aligned_cols=309 Identities=20% Similarity=0.299 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHHH------HH-h----HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 133 DFESKLQNEQEQRTKQL------KS-A----KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 133 dFEkRLKevQeeVkkLL------Kk-~----kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
.|-+|....+++=..|. +. + +..-.-+-.=+..+++.|.+..........-+..+..++..++..+.++
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46666666666655544 11 2 3334455556777888888888888888888888888888899999998
Q ss_pred hhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhhhhhhHhc
Q 036820 202 GEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNARASSLLVE 276 (651)
Q Consensus 202 Eedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~v~sL~~e 276 (651)
...-..++.++.+-+..+.-++-+++++.-.++.-|+.+..|-...+.-..+++.+..--++- +++.++++|.-+
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888889999999999999999999999999999999999999888888888877777644443 777778877644
Q ss_pred ccch----HHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHH
Q 036820 277 RDDS----KQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD 352 (651)
Q Consensus 277 k~~~----~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd 352 (651)
-+-. +..|.+.. .++..|.. .+-=+..+.+|..|+.|-+-....|.--| ++++.....
T Consensus 213 l~f~~~~h~~eI~e~~-----------~~~~rd~t-----~~~r~~F~~eL~~Ai~eiRaqye~~~~~n--R~diE~~Y~ 274 (546)
T KOG0977|consen 213 LAFLKRIHKQEIEEER-----------RKARRDTT-----ADNREYFKNELALAIREIRAQYEAISRQN--RKDIESWYK 274 (546)
T ss_pred HHHHHhccHHHHHHHH-----------HHHhhccc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 3222 23333332 23455554 11223456678888888887777665544 456666677
Q ss_pred Hhhhhhhh--h--HHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhh
Q 036820 353 NELGNVKN--L--KYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVL 428 (651)
Q Consensus 353 ~E~~~~k~--L--~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~L 428 (651)
+.+.+++. - ....-...|-|...|+.++.|...|-++-..|..|+.+|-.|..++.+=+......|++=..
T Consensus 275 ~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~----- 349 (546)
T KOG0977|consen 275 RKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDA----- 349 (546)
T ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHH-----
Confidence 77766662 1 11222234667778899999999999999999999999999999988877777766654322
Q ss_pred hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
-+.+..++++..+.||......--+|..|+ .+|.|+
T Consensus 350 ---------~i~~mReec~~l~~Elq~LlD~ki~Ld~EI-~~YRkL 385 (546)
T KOG0977|consen 350 ---------EIAKMREECQQLSVELQKLLDTKISLDAEI-AAYRKL 385 (546)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhchHhHHHhHH-HHHHHH
Confidence 245667899999999999999999999997 578876
No 28
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.17 E-value=0.032 Score=65.18 Aligned_cols=129 Identities=15% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV 240 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i 240 (651)
+++.+..+.+..+...+.....-.+.+...+..+.....+....++.....+..+ ++.|+.++.-.-..+......+
T Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~l~~~~~~~le~~~~~~~~~ 391 (908)
T COG0419 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER---LEELEKELEKALERLKQLEEAI 391 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333334444444444333333333333444444444 3334444443334445566677
Q ss_pred hhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHh
Q 036820 241 QKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL 294 (651)
Q Consensus 241 ~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~l 294 (651)
+.+...+......+.++...|....- .+..+..+.+...+.+..+...+..+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 392 QELKEELAELSAALEEIQEELEELEK--ELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776665522 33444444444444444444444443
No 29
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.13 E-value=0.0078 Score=68.50 Aligned_cols=273 Identities=23% Similarity=0.274 Sum_probs=167.3
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~ 344 (651)
.|+..+..|-.+.+....++.+..++.. ..+.|..+++..|..|++.+..--.+...-.-+.+.+..++
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne-----------~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk 152 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNE-----------QLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDK 152 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4666677776666666666665554444 33667889999999999988876555544445677788887
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Q 036820 345 DDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS 424 (651)
Q Consensus 345 ~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~ 424 (651)
.+..+. |.--+.||+-|.-.|+..-..-|+--+|...|.--...+..|...+..++.++..+++.+..+=.++.+.
T Consensus 153 ~t~SRA----lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 153 ATASRA----LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred hHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 777765 5566799999999999999999999999999999999999999999999999999999888775555443
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHh-----------hhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 036820 425 GEVLAGELFAAKEVLKKASEELQNVSHELEATAEN-----------RDSLRKELVNIYKKAEATANDLKEQKEIVSSLNK 493 (651)
Q Consensus 425 ~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~-----------rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~ 493 (651)
..-= .....+|+-.. +..++|++-.|+ -|.||-+-...---+|....||.+=+.-...++.
T Consensus 229 q~q~----dq~~~~Lqqy~----a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~q 300 (617)
T PF15070_consen 229 QEQR----DQYLGHLQQYV----AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQ 300 (617)
T ss_pred HHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3310 11111222211 112223222221 1222222222222334555555554444444444
Q ss_pred HHHHHHHHhh---hhHHHhHhHHHhHHHHhhhH-HHhhhhHHHHhHHH-------hhhhhccccchhHHHHHHHhHHHHH
Q 036820 494 ELQALEKQTS---KDKEARKSLETDLEEATKSL-DEMNRNALELSKNL-------EKANSQISNLEDEKAVLYKSLTEQK 562 (651)
Q Consensus 494 eL~al~~Q~~---~d~EaRk~Le~dLeeaT~Sl-dEmn~~~~~LS~~L-------e~ans~issle~eKevL~ksl~eqk 562 (651)
+-+-|..|+. ...+ -|=-+ ..+. .|+.+........+ ++-|+-+.+++.|++-|...|.+|+
T Consensus 301 qNqqL~~qls~~~~~~e------g~~~~-~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk 373 (617)
T PF15070_consen 301 QNQQLQAQLSLMALPGE------GDGLE-SESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQK 373 (617)
T ss_pred hhHHHHHHHHhhcCCCC------Ccccc-cccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444432 1211 11000 0011 12334444454444 3457778899999999999999998
Q ss_pred hhhHH
Q 036820 563 SIANE 567 (651)
Q Consensus 563 ~~t~E 567 (651)
.-+..
T Consensus 374 ~~~q~ 378 (617)
T PF15070_consen 374 VQCQH 378 (617)
T ss_pred HHHHH
Confidence 76543
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.11 E-value=0.016 Score=64.74 Aligned_cols=327 Identities=20% Similarity=0.303 Sum_probs=216.0
Q ss_pred hhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH
Q 036820 270 ASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK 349 (651)
Q Consensus 270 v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~ 349 (651)
|..|.. ..++..+...+.++|.++-. ..+..+++.|-.|-..+.+-+-. .-...+.+++.
T Consensus 53 vk~l~l-~Ges~~~f~~w~~~~~~i~~-----------------~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~ 112 (569)
T PRK04778 53 VKKLNL-TGQSEEKFEEWRQKWDEIVT-----------------NSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIES 112 (569)
T ss_pred HhcCCC-CcccHHHHHHHHHHHHHHHH-----------------hhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHH
Confidence 444433 67888999999999998763 23455566666666665555443 33456666666
Q ss_pred HHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHhc-c
Q 036820 350 MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS-----------CADLETEISRIRAEFAEVKHTLGN-S 417 (651)
Q Consensus 350 mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~-----------~~~L~~qiskl~~E~~e~ke~l~~-~ 417 (651)
+|+.==..++.+.+.|+.--+.=++.|.++-.|.+...+++.. ...|+.++..+..+|....+.-.. .
T Consensus 113 ~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd 192 (569)
T PRK04778 113 LLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD 192 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7766666777777777777777777888888887777777653 457899999999999888765543 3
Q ss_pred hHHHHhhhhhhhhhHHhHHHHHHHh-------HHHHHhhhHHHHH----------------HHHhhhhhhHHHHHHHHHh
Q 036820 418 LDEAKRSGEVLAGELFAAKEVLKKA-------SEELQNVSHELEA----------------TAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 418 l~eak~~~~~Ls~El~s~ke~l~k~-------~eeL~~~S~eL~~----------------~~e~rd~L~kEL~d~YKK~ 474 (651)
-.+|..+-..+-.++..+..++.+. +.++-.--.+|.. +...-+.+++.+.++...+
T Consensus 193 ~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 193 YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555544433 2222111122211 1222223333333333333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhc----------c
Q 036820 475 EATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQ----------I 544 (651)
Q Consensus 475 E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~----------i 544 (651)
... +|..-...+..++..+..|-.++.++-.||+..+......+..|+.+.++.--|..+++..+.. +
T Consensus 273 ~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~ 350 (569)
T PRK04778 273 EEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESV 350 (569)
T ss_pred Hhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHH
Confidence 332 5666777889999999999999999999999999999999999999999999999999988776 4
Q ss_pred ccchhHHHHHH-------HhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccc
Q 036820 545 SNLEDEKAVLY-------KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSS 617 (651)
Q Consensus 545 ssle~eKevL~-------ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss 617 (651)
..++.+-+-+. ..+.++...-.+.++.+++-..=+..+-.++..+......|..+-..|+-.+-++|..++..
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444 44444555555566666666666666666666666666666666666666666666666554
Q ss_pred c
Q 036820 618 K 618 (651)
Q Consensus 618 ~ 618 (651)
+
T Consensus 431 k 431 (569)
T PRK04778 431 K 431 (569)
T ss_pred H
Confidence 4
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.00 E-value=1.2e-06 Score=101.15 Aligned_cols=337 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhh
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRL---REKKEELHQLKEKLELTLDEACENRATIAKFT 341 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL---~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~ 341 (651)
+|+..|.++...+.++++++-.+..++++++.-.+.-...=.++- ..-..++..|.-+|+.+=+-.+.=.-....|.
T Consensus 163 dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~ 242 (859)
T PF01576_consen 163 DLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLE 242 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888887655443221111111 11122233333333222222222233566788
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH-
Q 036820 342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE- 420 (651)
Q Consensus 342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e- 420 (651)
+.++++++.|+.|.....+|.+.++..+. ++..|.+++++-...-..|+.++++++.|+..++..+..-+..
T Consensus 243 ~qLeelk~~leeEtr~k~~L~~~l~~le~-------e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~ 315 (859)
T PF01576_consen 243 SQLEELKRQLEEETRAKQALEKQLRQLEH-------ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR 315 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHhHhhhhhhhHHHHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 99999999999999888888877766654 5556666777777777888899999999988888776653222
Q ss_pred ---HHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 036820 421 ---AKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQA 497 (651)
Q Consensus 421 ---ak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~a 497 (651)
.+..=+.|...|..+.+.+. ..-......--.+.-|+-|+-| ..-+|-..+..+..|.+--..
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le-------~~~~~~~~LeK~k~rL~~EleD-------l~~eLe~~~~~~~~LeKKqr~ 381 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLE-------EANAKVSSLEKTKKRLQGELED-------LTSELEKAQAAAAELEKKQRK 381 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 22222233333333222221 1111122222223334444443 455666777888888888888
Q ss_pred HHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHH
Q 036820 498 LEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHN 577 (651)
Q Consensus 498 l~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~n 577 (651)
+.+++.--+.-=..+...++.+.+-...+..-.+.|-..|+.....+..++.++..|..-|.+=.....++-.|+-+-..
T Consensus 382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek 461 (859)
T PF01576_consen 382 FDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEK 461 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHH
Confidence 88877766666666778888889889999999999999999999999999999999998888877777888888888888
Q ss_pred HHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCccC
Q 036820 578 LVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLVN 622 (651)
Q Consensus 578 li~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~n 622 (651)
.+.+|-.|++.+......+|..|-.+-+-++||=..++..+..-+
T Consensus 462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE 506 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888999999998899998888888877763
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.98 E-value=0.052 Score=61.33 Aligned_cols=92 Identities=35% Similarity=0.443 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHH
Q 036820 317 HQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADL 396 (651)
Q Consensus 317 ~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L 396 (651)
.||.-+|..|.-.-...+ +..-+|+.++..-....=..|-+|+.+++-..+.|...|.|-..|..+|.+-++.+.
T Consensus 335 aql~~qLad~~l~lke~~---~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~-- 409 (546)
T PF07888_consen 335 AQLKLQLADASLELKEGR---SQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR-- 409 (546)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence 344444444433332222 455566666664343343456788889999999999999998899999988777663
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036820 397 ETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 397 ~~qiskl~~E~~e~ke~l 414 (651)
-|||...-|+.|.+.+|
T Consensus 410 -vqlsE~~rel~Elks~l 426 (546)
T PF07888_consen 410 -VQLSENRRELQELKSSL 426 (546)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 37777777777655544
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.12 Score=61.89 Aligned_cols=433 Identities=22% Similarity=0.324 Sum_probs=270.6
Q ss_pred hhHHHHHhhhhhhhHh---HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------------HHh-HHH
Q 036820 93 GVLGALYALTQNEKKA---TDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-------------KSA-KEE 155 (651)
Q Consensus 93 Gvlg~Ly~l~q~ekka---~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-------------Kk~-kEe 155 (651)
++|-..-++-+.|++- +..-|+.-+.+|+++++++---...|++ +++...+..+++ -+. .++
T Consensus 315 t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~-~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~ 393 (1174)
T KOG0933|consen 315 TSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEK-LKEAFQEDSKLLEKAEELVESLTAGLSSNEDE 393 (1174)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 4444444444445443 4456677788999999999887777763 333333333333 112 234
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhH--------------HHhhhhhHHHHHHHHHH---hhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS--------------LLKFGEDKRTLEEERKQ---KLDR 218 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ss--------------LsqAEedkd~Ae~eLee---Kl~~ 218 (651)
+.+|-+||.+.+.++..........+--.+-++.++...... +.+-.+.++.++..|+. +.+.
T Consensus 394 e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~ 473 (1174)
T KOG0933|consen 394 EKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ 473 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 788999999999999888877776666666655555444333 33334444444444443 5566
Q ss_pred HHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhh-------------------hHhhhhhh---------------
Q 036820 219 IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKN-------------------LNSVYKQN--------------- 264 (651)
Q Consensus 219 i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~n-------------------L~~~y~qt--------------- 264 (651)
++.|+.+-+-|...+-+-.+.+..|+++|+--+--|+. ++.....|
T Consensus 474 ~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv 553 (1174)
T KOG0933|consen 474 EEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVV 553 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEe
Confidence 77777777777777777777888888887666555551 11111122
Q ss_pred --------------------------------------------------------------------------------
Q 036820 265 -------------------------------------------------------------------------------- 264 (651)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (651)
T Consensus 554 ~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~ 633 (1174)
T KOG0933|consen 554 DTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDV 633 (1174)
T ss_pred echHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHH
Confidence
Q ss_pred -------------------------------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhh
Q 036820 265 -------------------------------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAK 307 (651)
Q Consensus 265 -------------------------------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~ 307 (651)
++=.+++-|+ ++..+|.+++++|.++-. -..
T Consensus 634 AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~----~~~~~~~~~q~el~~le~--------eL~ 701 (1174)
T KOG0933|consen 634 AKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLK----QAQKELRAIQKELEALER--------ELK 701 (1174)
T ss_pred HHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------HHH
Confidence 1112233332 244555566666655431 222
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHhhhchhHHH--hhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820 308 RLREKKEELHQLKEKLELTLDEACENRATIA--KFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ 385 (651)
Q Consensus 308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia--~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~ 385 (651)
.|--.-...+.|+.+|...+-+..-....+. ..-+-.+++..|+ +.|..+...|..++.++.++-.+++.|+..
T Consensus 702 ~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~----e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~ 777 (1174)
T KOG0933|consen 702 SLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELL----EEVEESEQQIKEKERALKKCEDKISTLEKK 777 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566666676666555432222211 2222334444443 346677888999999999999999999998
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHh---cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhh
Q 036820 386 LKQSKDSCADLETEISRIRAEFAEVKHTLG---NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS 462 (651)
Q Consensus 386 L~~~~~~~~~L~~qiskl~~E~~e~ke~l~---~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~ 462 (651)
......- =+..+-.++.|+..+++.+. +.++..+..-+.|-.|...+..-++..+-.|+..-.++.+....-+.
T Consensus 778 ~~d~~~~---re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 778 MKDAKAN---RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred HhHhhhh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876543 34556666667777766654 44566667777788888888777888888888888888888888899
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820 463 LRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT-------SKDKEARKSLETDLEEATKSLDEMNRNALELSK 535 (651)
Q Consensus 463 L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~-------~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~ 535 (651)
|.-.+.++|+-......+|..+++-..-.+.++..+..-. ..-+--|+-|+-++. -|-+++-..++
T Consensus 855 l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~-------~~~~e~~~~~k 927 (1174)
T KOG0933|consen 855 LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT-------KLESEKANARK 927 (1174)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH-------HhhhhHHHHHH
Confidence 9999999999999999999999999999998885443222 111223455554443 34444555555
Q ss_pred HHhhhhhccccchhHHH
Q 036820 536 NLEKANSQISNLEDEKA 552 (651)
Q Consensus 536 ~Le~ans~issle~eKe 552 (651)
+++..--.+.=|.+||.
T Consensus 928 ~v~~l~~k~~wi~~ek~ 944 (1174)
T KOG0933|consen 928 EVEKLLKKHEWIGDEKR 944 (1174)
T ss_pred HHHHHHHhccchhHHHH
Confidence 55555555555555543
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.12 Score=60.02 Aligned_cols=410 Identities=20% Similarity=0.221 Sum_probs=215.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh--------------hhh
Q 036820 173 LGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE--------------KDD 238 (651)
Q Consensus 173 L~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~--------------Ke~ 238 (651)
-...+.+-..++++....+...-..+.......+.+-+++.-=...++++-.++...+++..- .|.
T Consensus 144 ~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~ 223 (698)
T KOG0978|consen 144 NSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRKTMESDEA 223 (698)
T ss_pred chhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 345566666666666665665556666666666666666655555567777777777777441 111
Q ss_pred ----hhhhhhhhhhhhHHHhhhhHhhhhhh--------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh-chhhhhhhh
Q 036820 239 ----GVQKLSSSLQQKETELKNLNSVYKQN--------ELNARASSLLVERDDSKQKLEAVQKEYKELKL-SSENETASN 305 (651)
Q Consensus 239 ----~i~~l~SsLa~KE~e~~nL~~~y~qt--------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~-ssE~~aa~d 305 (651)
.+-.+...++..-.+|.+|.-.+.+. ++|..+..|++--.+....+-....+|.+-.. .+..|+.
T Consensus 224 ~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~-- 301 (698)
T KOG0978|consen 224 INSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQ-- 301 (698)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--
Confidence 12334455666667777777766665 56666665555433333333332222222100 0011111
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH-HHHHHhhhhhhhhHHHHHhhHHHHHhhhh--hhhHH
Q 036820 306 AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR-KMLDNELGNVKNLKYELQITQETLETTRN--EASDL 382 (651)
Q Consensus 306 a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r-~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~--e~s~L 382 (651)
..-+.+.+..-..+-....+.|+++..+..++. ...+...+.++.+...+- ...+.+++ ++...
T Consensus 302 ----------~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~k~~di~~~ 368 (698)
T KOG0978|consen 302 ----------HSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLR---EKDRESQKERDILVA 368 (698)
T ss_pred ----------HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHhhhhHhHHHH
Confidence 111112222222233333444445444444444 233333333333332222 12222222 11111
Q ss_pred HHHHHH-----HHhhhhHHHHHHH----HHHHHHHHHHHHHhc------------chHHHHhhhhhhhhhHHhHHHHHHH
Q 036820 383 EKQLKQ-----SKDSCADLETEIS----RIRAEFAEVKHTLGN------------SLDEAKRSGEVLAGELFAAKEVLKK 441 (651)
Q Consensus 383 ~~~L~~-----~~~~~~~L~~qis----kl~~E~~e~ke~l~~------------~l~eak~~~~~Ls~El~s~ke~l~k 441 (651)
..++-. .-.++.-+.-++- +...|.....+.+-. ..+.++. =.+++...++.|++
T Consensus 369 k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r----~~~~~~~~~e~Lqk 444 (698)
T KOG0978|consen 369 KSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAER----QIRQVEELSEELQK 444 (698)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----hHHHHHHHHHHHHH
Confidence 111111 1111222222222 111222211111111 1111111 11345555666666
Q ss_pred hHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHH
Q 036820 442 ASEELQNVSHELEATAENRDSLRKELVNIYKKAEA-------TANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLET 514 (651)
Q Consensus 442 ~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~-------t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~ 514 (651)
..+.....+.++.++--+.++.|.....-|--++. .-.+...=.+++-+|-.+...|.+|+...+-+-..++.
T Consensus 445 ~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~ 524 (698)
T KOG0978|consen 445 KEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLEL 524 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665555444432221 12344445577888999999999999988877666655
Q ss_pred hHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHH--------------hhchHHHHHHHH
Q 036820 515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANES--------------RENMEDAHNLVM 580 (651)
Q Consensus 515 dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EA--------------qeN~eDA~nli~ 580 (651)
+.-. |=..+-.-.+..+++.+|...+..++...++-.+++ +.-|+|.+-.+.
T Consensus 525 ~i~~--------------leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 525 KIGK--------------LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHH--------------HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 223344455667788888888888888888777665 445777778888
Q ss_pred HhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccc
Q 036820 581 RLGQERKSLDKRSKKLEEELASAKGEILRLRSQIN 615 (651)
Q Consensus 581 ~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ 615 (651)
-++-|.+-|-...++||||+...+|..=|+++-.+
T Consensus 591 e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 591 ELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88999999999999999999999999999988776
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.77 E-value=0.12 Score=57.93 Aligned_cols=187 Identities=20% Similarity=0.320 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhh-----chhHHHhhhhhHHHHHHHHHHh
Q 036820 280 SKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACE-----NRATIAKFTQEKDDLRKMLDNE 354 (651)
Q Consensus 280 ~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k-----~~~~Ia~L~~e~~~~r~mLd~E 354 (651)
+-.++++|..=|.+++.. -.+.+= ..-+.+++++.+++..++..... =...+.++...++++-..|..|
T Consensus 228 ~P~ql~el~~gy~~m~~~-----gy~~~~-~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE 301 (569)
T PRK04778 228 LPDQLQELKAGYRELVEE-----GYHLDH-LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE 301 (569)
T ss_pred hhHHHHHHHHHHHHHHHc-----CCCCCC-CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666531 111111 13578899999999987765443 3567788999999999999999
Q ss_pred hhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Q 036820 355 LGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS----------CADLETEISRIRAEFAEVKHTLGNSLDEAKRS 424 (651)
Q Consensus 355 ~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~----------~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~ 424 (651)
+.+.+............|...+...-.|..+++.++.. -..++.++..+...+....+.+..+
T Consensus 302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~------- 374 (569)
T PRK04778 302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ------- 374 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 99999999999999999999999999999999999887 4455555555555554443332222
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH
Q 036820 425 GEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKE 483 (651)
Q Consensus 425 ~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ 483 (651)
......+++.+....+.+...-.+-....+.-.+|.++-.++=++++.-...|..
T Consensus 375 ----~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 375 ----EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224455666666666666666666666666667777777666666655555443
No 36
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.76 E-value=2e-05 Score=89.17 Aligned_cols=142 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhhhhHhHHHHHHHHHHHHHH---HhHhhhchhHHHhhhhhHHHHHHHHHH---hhhhhhhhHHHHHhhHHHHHhhhhh
Q 036820 305 NAKRLREKKEELHQLKEKLELT---LDEACENRATIAKFTQEKDDLRKMLDN---ELGNVKNLKYELQITQETLETTRNE 378 (651)
Q Consensus 305 da~lL~eke~~l~qLeekl~~A---l~e~~k~~~~Ia~L~~e~~~~r~mLd~---E~~~~k~L~~~lq~Tqe~L~~sR~e 378 (651)
+.+||.|. .+.|+-+|..+ -.+...=++-+..|-.++.....++.+ ++.....+...|-..+-.-....++
T Consensus 282 n~elLeEe---~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek 358 (722)
T PF05557_consen 282 NVELLEEE---KRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEK 358 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35555443 34444444432 223333344455556666666665555 3333333433333333333333445
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc---chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN---SLDEAKRSGEVLAGELFAAKEVLKKASEELQNV 449 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~---~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~ 449 (651)
...+.-++.+....|..|+.++..+..++.+.+..+.. .+...++---.+..|...+|.+|+---.|...+
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~ 432 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTM 432 (722)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55555566666666666666666666666665554322 222333344455667777777776655554443
No 37
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.66 E-value=0.082 Score=55.90 Aligned_cols=206 Identities=20% Similarity=0.322 Sum_probs=136.4
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhc---hhHHHhhh
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACEN---RATIAKFT 341 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~---~~~Ia~L~ 341 (651)
.+|.+|+.|-..+++...+++.|.++|..++-.+.... .----+...+..+.+|+-++.+.-=.-..- --.|++|.
T Consensus 66 eineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~ 144 (294)
T COG1340 66 EINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELR 144 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998877552 222334667788889988887753333332 33478888
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 036820 342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEA 421 (651)
Q Consensus 342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~ea 421 (651)
+++++-+.+++ .-..++.|..++..-.....+.++++-.|+.+.++.-.--..+-..+-.+..+..++.+-+......+
T Consensus 145 k~le~~~k~~e-~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~ 223 (294)
T COG1340 145 KELEDAKKALE-ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKI 223 (294)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888775 34456667777777777777888888888888777666666666666666666666666555444443
Q ss_pred HhhhhhhhhhHHhHHHHHHHhHHHHHhhh--HHHHHHHHhhhhhhHHHHHHHHHhHh
Q 036820 422 KRSGEVLAGELFAAKEVLKKASEELQNVS--HELEATAENRDSLRKELVNIYKKAEA 476 (651)
Q Consensus 422 k~~~~~Ls~El~s~ke~l~k~~eeL~~~S--~eL~~~~e~rd~L~kEL~d~YKK~E~ 476 (651)
... ..|+..++.=++.....+...= .--+...+.++.++.-..++|.||.-
T Consensus 224 ~e~----~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~ 276 (294)
T COG1340 224 DEL----HEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR 276 (294)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333 3333333333332222222111 11134566777888888888888863
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.63 E-value=0.03 Score=60.09 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=6.6
Q ss_pred hhhhhhHhHHHHHHH
Q 036820 305 NAKRLREKKEELHQL 319 (651)
Q Consensus 305 da~lL~eke~~l~qL 319 (651)
|..++.+-.+..++|
T Consensus 168 d~~~l~~l~~~~~~L 182 (428)
T PRK11637 168 RQETIAELKQTREEL 182 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444333333
No 39
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.26 Score=57.84 Aligned_cols=120 Identities=26% Similarity=0.353 Sum_probs=64.7
Q ss_pred hhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820 269 RASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348 (651)
Q Consensus 269 ~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r 348 (651)
.+.++.........++..+..++.+|.......+....+...+.+..+.+++..+..++.........|..+..++..+.
T Consensus 323 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~ 402 (908)
T COG0419 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666666666666666666666666666666666666666555555555555555555555555
Q ss_pred HHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH
Q 036820 349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ 388 (651)
Q Consensus 349 ~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~ 388 (651)
..++.=...+..+...+...+..|..-+...-.+...+..
T Consensus 403 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444444444444444444444444333
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.61 E-value=0.02 Score=57.30 Aligned_cols=213 Identities=18% Similarity=0.270 Sum_probs=111.8
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhh
Q 036820 188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN 267 (651)
Q Consensus 188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln 267 (651)
...++.+...+..+...++.+...+..--..+..|+.||.+|-.++..-+.++......|...+.........+
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~------ 80 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR------ 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444444444444444444444444444556667777777777777777766666666666555544332222
Q ss_pred hhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHH
Q 036820 268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDL 347 (651)
Q Consensus 268 ~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~ 347 (651)
..|-.--.....+|+.|..+..+.+...+.- |.++ .+-...|+.++..|..|-.-+..-...|.+|..++...
T Consensus 81 ---k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~---e~k~-~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 81 ---KVLENREQSDEERIEELEQQLKEAKRRAEEA---ERKY-EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 1222222233444444444444444433321 1111 34445566666666666666666666666666666655
Q ss_pred HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820 348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413 (651)
Q Consensus 348 r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~ 413 (651)
..-|..==.......+-...-++.+......+...+...+.+-+.|..|+.+|..|.+++...+.-
T Consensus 154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443222233334444445555555555555566666666666666666666666666655543
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.60 E-value=0.35 Score=58.73 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHh----hhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 036820 188 RIEIDSLQTSLLKFGEDKRTLEEERKQK----LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL 257 (651)
Q Consensus 188 k~eIeql~ssLsqAEedkd~Ae~eLeeK----l~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL 257 (651)
+..++.+...+...+..++.++.+-..= +..+....++.-.+..++..+...+.-|.+.-..-+..|..+
T Consensus 312 ~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 312 NKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433221 222233333334445555555555555555555555555443
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.54 E-value=0.041 Score=55.14 Aligned_cols=25 Identities=44% Similarity=0.464 Sum_probs=10.7
Q ss_pred hhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820 428 LAGELFAAKEVLKKASEELQNVSHE 452 (651)
Q Consensus 428 Ls~El~s~ke~l~k~~eeL~~~S~e 452 (651)
|-++|...|+-.+.++.+|+.|-++
T Consensus 209 le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 209 LEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.50 E-value=0.03 Score=60.71 Aligned_cols=179 Identities=16% Similarity=0.251 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHhcch
Q 036820 344 KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH-----TLGNSL 418 (651)
Q Consensus 344 ~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke-----~l~~~l 418 (651)
.+++++.++.-+...+.+..++...++.+.+.++++.++.+.|+.+...-.+++.++..+..+.+-.+. +..+.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 556666666777777888888888899999999999999999988888888888888887777665531 011222
Q ss_pred HHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH---HHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 036820 419 DEAKRSGEVLAGELFAAKEVLKKASEELQNVSH---ELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKEL 495 (651)
Q Consensus 419 ~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~---eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL 495 (651)
+.. -+.++.+.+.+..-+.++..... ++.......+.+++.+-+...++......+..-+.-...|..++
T Consensus 295 ~~~-------~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei 367 (562)
T PHA02562 295 SEG-------PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI 367 (562)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 23344444443333333333333 33355555666666666666666666666555445555666777
Q ss_pred HHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhh
Q 036820 496 QALEKQTSKDKEARKSLETDLEEATKSLDEMNRN 529 (651)
Q Consensus 496 ~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~ 529 (651)
+.|+.......+--+.|+.+|+++..-..++.+.
T Consensus 368 ~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 368 EELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665444444445555555555444444433
No 44
>PRK11637 AmiB activator; Provisional
Probab=97.45 E-value=0.042 Score=59.00 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhh
Q 036820 345 DDLRKMLDNELGNVKNLKYELQITQETLETTRN 377 (651)
Q Consensus 345 ~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~ 377 (651)
.+.++-|+.+......+..+++..+..|...+.
T Consensus 183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.44 E-value=0.33 Score=54.59 Aligned_cols=270 Identities=22% Similarity=0.342 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhh-------hHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhH
Q 036820 186 ELRIEIDSLQTSLLKFGEDKRTLEEERKQKLD-------RIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLN 258 (651)
Q Consensus 186 dlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~-------~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~ 258 (651)
.++..+..++..+..++.+++.+...|.+=++ .|+.|.++..-+...+-+.-. .+..++..-|..+.++-
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~---~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF---SYGPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhchhHHHHHHHHHHHH
Confidence 34445555555555555555555555554443 455555555555555544322 34455556666666666
Q ss_pred hhhhhh------------------------hhhh---hhhhhHhc-ccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhh
Q 036820 259 SVYKQN------------------------ELNA---RASSLLVE-RDDSKQKLEAVQKEYKELKLSSENETASNAKRLR 310 (651)
Q Consensus 259 ~~y~qt------------------------~Ln~---~v~sL~~e-k~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~ 310 (651)
..|++- .|.. +|-.|+.. ++..-.+|++|..-|..++..- ...+= .
T Consensus 175 ~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g-----y~l~~-~ 248 (560)
T PF06160_consen 175 EEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG-----YYLEH-L 248 (560)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-----CCCCC-C
Confidence 666654 2222 24455555 6778888888888888876532 11111 2
Q ss_pred HhHHHHHHHHHHHHHHHhHhh-----hchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820 311 EKKEELHQLKEKLELTLDEAC-----ENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ 385 (651)
Q Consensus 311 eke~~l~qLeekl~~Al~e~~-----k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~ 385 (651)
.-+.+++++++++..++..-. .=...+.++..+.+.+-.+|..|+.+.+.....+....+.|...++....|..+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887776543 334567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820 386 LKQSKDS----------CADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 386 L~~~~~~----------~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~ 455 (651)
++.++.+ -..+..+|..+...+....+.+ .+-..+--.+..++....+.|. ....+...
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i----~~~~~~yS~i~~~l~~~~~~l~-------~ie~~q~~ 397 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERI----EEQQVPYSEIQEELEEIEEQLE-------EIEEEQEE 397 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcCHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 9888754 2344555555555554444433 3334444344444444444433 33333344
Q ss_pred HHHhhhhhhHHHHHHHHHhH
Q 036820 456 TAENRDSLRKELVNIYKKAE 475 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK~E 475 (651)
..+.-++|.++=.+|=+++.
T Consensus 398 ~~~~l~~L~~dE~~Ar~~l~ 417 (560)
T PF06160_consen 398 INESLQSLRKDEKEAREKLQ 417 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 46
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.44 E-value=0.35 Score=54.83 Aligned_cols=290 Identities=17% Similarity=0.235 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
..+..++..+...+..+..+.......+..+..+++.+...+...+..+...-+.+.+. .+.|..++..+..+++..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~---r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE---REQLERQLKEIEAARKAN 281 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666665555444444433332 344555666666666666
Q ss_pred hhhhhhhhhhh-----hhh---------HHHhhhhHhhhhhhhhhhhhhhhHhcc---cchHHHHHHHHHHHHH-hhh-c
Q 036820 237 DDGVQKLSSSL-----QQK---------ETELKNLNSVYKQNELNARASSLLVER---DDSKQKLEAVQKEYKE-LKL-S 297 (651)
Q Consensus 237 e~~i~~l~SsL-----a~K---------E~e~~nL~~~y~qt~Ln~~v~sL~~ek---~~~~~k~~~l~key~~-lk~-s 297 (651)
+..+.++-+.. +.+ +.+...-..-+.+..|+.+..-|+..- ..-...+..|...... ..+ .
T Consensus 282 ~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~ 361 (650)
T TIGR03185 282 RAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPAT 361 (650)
T ss_pred HHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhccccc
Confidence 66665544221 111 111110011111124444433333211 1111223333332221 110 1
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHH---HHH-HHHhHhhhchhHHHhhhhhHHHHHHHHHH--hhhhhhhhHHHHHhhHHH
Q 036820 298 SENETASNAKRLREKKEELHQLKE---KLE-LTLDEACENRATIAKFTQEKDDLRKMLDN--ELGNVKNLKYELQITQET 371 (651)
Q Consensus 298 sE~~aa~da~lL~eke~~l~qLee---kl~-~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~--E~~~~k~L~~~lq~Tqe~ 371 (651)
.+..--+|+ -..++.++.. .+. ...+...+-...|..+..+++.+.+.|.. .-+.++.+...+...+..
T Consensus 362 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~ 436 (650)
T TIGR03185 362 TDSEIPHRL-----SGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNE 436 (650)
T ss_pred ccccccccC-----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 111111222 2232333332 222 34456666777788888888888888853 224666666666666666
Q ss_pred HHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH
Q 036820 372 LETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH 451 (651)
Q Consensus 372 L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~ 451 (651)
+.....+...+..++...+.....++.++.+++...... ..+.+.++-++.+ +++|.+-+..
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~l~~~~~~------ 498 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA-FELERAITIADKA-----------KKTLKEFREK------ 498 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH-----------HHHHHHHHHH------
Confidence 666666666666666665555555555555544433332 2223333333333 3333322222
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhH
Q 036820 452 ELEATAENRDSLRKELVNIYKKAE 475 (651)
Q Consensus 452 eL~~~~e~rd~L~kEL~d~YKK~E 475 (651)
..-..+..|.+++.++|+++=
T Consensus 499 ---l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 499 ---LLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh
Confidence 223456677777777777763
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.37 E-value=0.33 Score=52.87 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=11.5
Q ss_pred CchhhHHHHHhhhhhhhHh
Q 036820 90 PRSGVLGALYALTQNEKKA 108 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~ekka 108 (651)
|+.|-+..+|.+...++..
T Consensus 136 l~q~~f~~f~~~~~~er~~ 154 (562)
T PHA02562 136 LGTAGYVPFMQLSAPARRK 154 (562)
T ss_pred eccCchhhHhcCChHhHHH
Confidence 4566666666666666543
No 48
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.34 E-value=0.6 Score=55.33 Aligned_cols=338 Identities=20% Similarity=0.257 Sum_probs=172.1
Q ss_pred HHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh------------hhhhhhhhhHhcccchHHHHHH
Q 036820 219 IEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN------------ELNARASSLLVERDDSKQKLEA 286 (651)
Q Consensus 219 i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt------------~Ln~~v~sL~~ek~~~~~k~~~ 286 (651)
--++..-+|||-.+++.++-.|+.|--++..-|.+.+.|+.+-.-- ++|+++--|. ++.--+-++
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le---~eLsAk~~e 163 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLE---DELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHhhhhHH
Confidence 3456667788888888888888888888888888887777654321 4444433322 333344555
Q ss_pred HHHHHHHhhhchhhhhhhhhh---hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 036820 287 VQKEYKELKLSSENETASNAK---RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKY 363 (651)
Q Consensus 287 l~key~~lk~ssE~~aa~da~---lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~ 363 (651)
|+--+.+|+-+-+.=.....+ +|.+--.+-++|++++..-=.+...|..+.-++++.-...+.+|..+ ..|.
T Consensus 164 If~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev----~QLs- 238 (1265)
T KOG0976|consen 164 IFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEV----MQLS- 238 (1265)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence 555555555444333322222 12333333344444444433333444444444444444444444322 1222
Q ss_pred HHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhH
Q 036820 364 ELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 364 ~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~ 443 (651)
+-.++|+..|..++.|.++-.-...++..++.. .-+-|....+|.+|+-.--++++-.|
T Consensus 239 ---s~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~------------------m~qlk~kns~L~~ElSqkeelVk~~q 297 (1265)
T KOG0976|consen 239 ---SQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEK------------------MRQLKAKNSVLGDELSQKEELVKELQ 297 (1265)
T ss_pred ---HhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 223355555555555555554444444433322 22345556678888888888888888
Q ss_pred HHHHhhh----HHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHH
Q 036820 444 EELQNVS----HELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEA 519 (651)
Q Consensus 444 eeL~~~S----~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeea 519 (651)
++|+..- .-+....+++.-|--|-...-.-.=.-..+|++.|.-+-.+..-++.|+|+-- ++..-
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd-----------~al~d 366 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD-----------MALMD 366 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-----------HHHHh
Confidence 8887532 22223333333332222111111112346777777777788888888887632 22233
Q ss_pred hhhHHHhhhhHHHH-----------hHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhh
Q 036820 520 TKSLDEMNRNALEL-----------SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKS 588 (651)
Q Consensus 520 T~SldEmn~~~~~L-----------S~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~ 588 (651)
.+|+-|.-+|.-.+ -...+...+||-.++. +.+--.--||- +-.|..=.-.+|++|--
T Consensus 367 vr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~----~~~dhe~~kne-------L~~a~ekld~mgthl~m 435 (1265)
T KOG0976|consen 367 VRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ----GKKDHEAAKNE-------LQEALEKLDLMGTHLSM 435 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----ccchhHHHHHH-------HHHHHHHHHHHhHHHHH
Confidence 34444444433222 1222333444444321 11111122222 33344445567888887
Q ss_pred hhHhhhhhHHHHhhcccch
Q 036820 589 LDKRSKKLEEELASAKGEI 607 (651)
Q Consensus 589 ~e~r~kkLEeELAsAKGEi 607 (651)
++...-.+--=-.+|+|-+
T Consensus 436 ad~Q~s~fk~Lke~aegsr 454 (1265)
T KOG0976|consen 436 ADYQLSNFKVLKEHAEGSR 454 (1265)
T ss_pred HHHHHhhHHHHHHhhhhhH
Confidence 7777666655555666643
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.32 E-value=0.24 Score=50.40 Aligned_cols=240 Identities=19% Similarity=0.302 Sum_probs=106.7
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV 240 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i 240 (651)
.+|+.+...-..+.-++.+...-+++++.+.+........++..+..++..+.+---....|+.+|--|..++.-....
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~- 139 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN- 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh-
Confidence 3344444444444455556666666666666666666666666677777776666555555666665555555433211
Q ss_pred hhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHH
Q 036820 241 QKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLK 320 (651)
Q Consensus 241 ~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLe 320 (651)
-+.++..|..... +.....+.. .-..+....|..|..+|...-. ..+.-.+ ....
T Consensus 140 ---------heeEi~~L~~~~~-~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~--~~~~e~e-----------~~y~ 194 (312)
T PF00038_consen 140 ---------HEEEIEELREQIQ-SSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQ--KNREELE-----------EWYQ 194 (312)
T ss_dssp ---------HHHHHHTTSTT-------------------HHHHHHHHHHHHHHHHH--HHHHHHH-----------HHHH
T ss_pred ---------hhhhhhhhhhccc-cccceeecc--cccccchhhhhhHHHHHHHHHh--hhhhhhh-----------hhcc
Confidence 1122222222111 111111111 2233455666667777754321 1121111 1111
Q ss_pred HHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH----hhhhHH
Q 036820 321 EKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK----DSCADL 396 (651)
Q Consensus 321 ekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~----~~~~~L 396 (651)
.++...-..+..+...+..+..|.. .++..++..+.-|...++....|+.++.+.. .-..++
T Consensus 195 ~k~~~l~~~~~~~~~~~~~~~~E~~--------------~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 195 SKLEELRQQSEKSSEELESAKEELK--------------ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHhHHH--------------HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 2222222222222222223333322 2333333334444444444444444444332 223345
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhh---hhhhhhhHHhHHHHHH
Q 036820 397 ETEISRIRAEFAEVKHTLGNSLDEAKRS---GEVLAGELFAAKEVLK 440 (651)
Q Consensus 397 ~~qiskl~~E~~e~ke~l~~~l~eak~~---~~~Ls~El~s~ke~l~ 440 (651)
...|..+..|+.+++..++..+.+-... =-.|--|+++-+-+|.
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 5566666666666666666655444332 2356677777777664
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.16 E-value=0.98 Score=54.14 Aligned_cols=323 Identities=19% Similarity=0.260 Sum_probs=175.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhHH-HHHHHHHHHHHH-HHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 036820 111 ATLEYMKARLKEKEAAIVSLEK-DFESKLQNEQEQ-RTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELR 188 (651)
Q Consensus 111 ~tiesm~~kL~e~Eaa~~~lDe-dFEkRLKevQee-VkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk 188 (651)
.|=..+.+++++-..-+..++. --|++.+-.+=+ ++.++.+.++...-+|.|..++.+.|..-+++...+.++-+..+
T Consensus 224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k 303 (1243)
T KOG0971|consen 224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYK 303 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444332 123333333323 44445778999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhHHHhhhhHhhhh
Q 036820 189 IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQK------LSSSLQQKETELKNLNSVYK 262 (651)
Q Consensus 189 ~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~------l~SsLa~KE~e~~nL~~~y~ 262 (651)
.......+++.-+-=||+.|+..-+-==..++.|++||.-|+.++.=-...+++ .-|+-..|..|.+|-..--.
T Consensus 304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 999999999998888888887665544455667777777666665432222222 12334455555544322110
Q ss_pred hh---hhhhhhhhhHhcccchHHHHHHHHHH-------HHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhh
Q 036820 263 QN---ELNARASSLLVERDDSKQKLEAVQKE-------YKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACE 332 (651)
Q Consensus 263 qt---~Ln~~v~sL~~ek~~~~~k~~~l~ke-------y~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k 332 (651)
-- |||+. .+...--++|+ .++|+..-|.= +.-+.+-+..|--|.||.+.||.. -.
T Consensus 384 lVrLRDlsA~----------ek~d~qK~~kelE~k~sE~~eL~r~kE~L----sr~~d~aEs~iadlkEQVDAAlGA-E~ 448 (1243)
T KOG0971|consen 384 LVRLRDLSAS----------EKQDHQKLQKELEKKNSELEELRRQKERL----SRELDQAESTIADLKEQVDAALGA-EE 448 (1243)
T ss_pred HHHHHhcchH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcH-HH
Confidence 00 33322 00111111111 11222111110 000122233344555555555542 11
Q ss_pred chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820 333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH 412 (651)
Q Consensus 333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke 412 (651)
=-.-.+|.|=++++--+.|+.+|...--| -++-+||-++ |+.|++.+-+=.+-.+-.+.
T Consensus 449 MV~qLtdknlnlEekVklLeetv~dlEal------------------ee~~EQL~Es---n~ele~DLreEld~~~g~~k 507 (1243)
T KOG0971|consen 449 MVEQLTDKNLNLEEKVKLLEETVGDLEAL------------------EEMNEQLQES---NRELELDLREELDMAKGARK 507 (1243)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH---HHHHHHHHHHHHHHHhhHHH
Confidence 12234445555555444444444332222 1233333333 34444443333333334445
Q ss_pred HHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHh---hhhhhHHHHH
Q 036820 413 TLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAEN---RDSLRKELVN 469 (651)
Q Consensus 413 ~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~---rd~L~kEL~d 469 (651)
-|++.++.|--..--..-=+...||++.+-|+.|+-..++-.+..+. .++++.|-.|
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~d 567 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFD 567 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhH
Confidence 55555555555555566678888999999999998888776555443 4566666665
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.09 E-value=1.5 Score=55.06 Aligned_cols=205 Identities=9% Similarity=0.120 Sum_probs=132.5
Q ss_pred CchhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHH-------hhH---HHHHHHHHHHHHHHHHHHHH--hHHHhH
Q 036820 90 PRSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIV-------SLE---KDFESKLQNEQEQRTKQLKS--AKEEQQ 157 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~-------~lD---edFEkRLKevQeeVkkLLKk--~kEeeQ 157 (651)
|+.|.++|=|.-..+|.-.+-.-+.-...++++-+.-+. -++ .+-+.++...+.+..+..+. ....-.
T Consensus 265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l 344 (1486)
T PRK04863 265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL 344 (1486)
T ss_pred hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999987777766544444333333222222221 111 22333333333333333321 111112
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD 237 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke 237 (651)
.+...+.....++..+...+......++.+..++......+..++..++.++.++.+.-..++.+|.++.-+.+.+...+
T Consensus 345 r~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 345 RQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456667777888888888888888888888888888888888888889988998888899999999999988886544
Q ss_pred hhhhhhhh--hhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhc
Q 036820 238 DGVQKLSS--SLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLS 297 (651)
Q Consensus 238 ~~i~~l~S--sLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~s 297 (651)
.++.+.. .|+-.+ +++...-|.++ ++..++..+-...+.++..++.+.+.|+.+-..
T Consensus 425 -~~~~~~~~~~~SdEe--Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~ 485 (1486)
T PRK04863 425 -RAKQLCGLPDLTADN--AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI 485 (1486)
T ss_pred -HHHHHhCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666663 666555 44555555555 666667777777777777777777777776543
No 52
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.06 E-value=1.4 Score=54.16 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=23.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLE 383 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~ 383 (651)
.-+.+..+.+..+++-..=.+.+..++..+.+.++++..---+.-++.
T Consensus 603 ~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 603 ENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 334455555555555555455555555555555555444443433333
No 53
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.01 E-value=0.00032 Score=79.56 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhh--hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820 310 REKKEELHQLKEKLELTLDEACENRATIAKFT--QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 310 ~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~--~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~ 387 (651)
.+.+..+.+|+..+...-+++.-.+..-..++ .+++..-+-+-.|+...+....-++..+|-.....+.+..+ +
T Consensus 226 ~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~----E 301 (722)
T PF05557_consen 226 AEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL----E 301 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----H
Confidence 34555666666665544333211111111110 12222223334566555555555666666666555555443 3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820 388 QSKDSCADLETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~~ 416 (651)
.++.-...|+.++.+|.+|+....-.++.
T Consensus 302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~ 330 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNSWESLLQD 330 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455567777888888888776665554
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.97 E-value=0.47 Score=57.32 Aligned_cols=219 Identities=22% Similarity=0.373 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH------------HHhhhhHHHHHHHHHHHHHHHHH
Q 036820 344 KDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ------------SKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 344 ~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~------------~~~~~~~L~~qiskl~~E~~e~k 411 (651)
++..++.++.=.+.+++++-.+.--++-+...+ .++++.+.|.+ ..+-|..++-.|.+.+....+++
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~-~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE-QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566555666666666666555555443 34444444433 33445555556666555544433
Q ss_pred HHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 036820 412 HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSL 491 (651)
Q Consensus 412 e~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tL 491 (651)
.++++...--..+-+=++++...+....++-.++.-++...-+.-|.+..|..|+=-+.-..
T Consensus 302 ----~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~-------------- 363 (1074)
T KOG0250|consen 302 ----EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI-------------- 363 (1074)
T ss_pred ----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 33444333333344445555555555555555555555555444444444433332111111
Q ss_pred HHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHH-hhhhhccccchhHHHHHHHhHHHHHhhhHHHhh
Q 036820 492 NKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNL-EKANSQISNLEDEKAVLYKSLTEQKSIANESRE 570 (651)
Q Consensus 492 n~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~L-e~ans~issle~eKevL~ksl~eqk~~t~EAqe 570 (651)
+.+..+..+..|.+++-.--+=+++ ...++..+-++++-++|.+
T Consensus 364 ---------------------~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~-------------- 408 (1074)
T KOG0250|consen 364 ---------------------ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK-------------- 408 (1074)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--------------
Confidence 1122222222222222222222222 3445555566666666654
Q ss_pred chHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820 571 NMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616 (651)
Q Consensus 571 N~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s 616 (651)
-+|+.++.+.+|+.|++-+-...+.-++|+-.-+|+|+-||++|.-
T Consensus 409 evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 409 EVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3567778999999999999999999999999999999999998864
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.94 E-value=1.1 Score=51.00 Aligned_cols=126 Identities=25% Similarity=0.241 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHh
Q 036820 480 DLKEQKEIVSSLNKELQALEKQTSK--DKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKS 557 (651)
Q Consensus 480 eL~~ekkiv~tLn~eL~al~~Q~~~--d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ks 557 (651)
....=++-...+..||..+.+++.. +.+.-..+...++++.+-+++.+..-=.+-.+++..+..|..++.+..=+.+.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666777777777765 45777888888999888888888888888888888888887777665444333
Q ss_pred HHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHh-hhhhHHHHhhcccchhh
Q 036820 558 LTEQKSIANESRENMEDAHNLVMRLGQERKSLDKR-SKKLEEELASAKGEILR 609 (651)
Q Consensus 558 l~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r-~kkLEeELAsAKGEiLr 609 (651)
......++.-+.-|+.+...|+.-++.+..+ ...||.++-..=..|+|
T Consensus 472 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 472 ----KINAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred ----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444555677888888888888777665 55677776554444433
No 56
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.94 E-value=1 Score=50.74 Aligned_cols=325 Identities=21% Similarity=0.313 Sum_probs=221.1
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820 278 DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN 357 (651)
Q Consensus 278 ~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~ 357 (651)
+++.++...+.+.|.++-.. .+..+++.|-.|-..+.+-+- ..-.+.+..+..+|+.=-..
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~-----------------~~~~ie~~L~~ae~~~~~~rf--~ka~~~i~~~~~~l~~~e~~ 116 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTK-----------------QLPEIEEQLFEAEEYADKYRF--KKAKQAIKEIEEQLDEIEED 116 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777766432 233344444444444333322 22233344444444444444
Q ss_pred hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHhhh
Q 036820 358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKD-----------SCADLETEISRIRAEFAEVKHTLGN-SLDEAKRSG 425 (651)
Q Consensus 358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~-----------~~~~L~~qiskl~~E~~e~ke~l~~-~l~eak~~~ 425 (651)
++.+.++|...-+.=++.|.++-.|.+...+++. ....|+.++..+...|.+..+.... .-.+|..+-
T Consensus 117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil 196 (560)
T PF06160_consen 117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREIL 196 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455555555555555555555555555555543 4567899999999999998887766 667777777
Q ss_pred hhhhhhHHhHHHHHHH-------hHHHHHhhhHHHHHHHH---------hhhhhhHHHHHHHHHhHhhHHHH-----HHH
Q 036820 426 EVLAGELFAAKEVLKK-------ASEELQNVSHELEATAE---------NRDSLRKELVNIYKKAEATANDL-----KEQ 484 (651)
Q Consensus 426 ~~Ls~El~s~ke~l~k-------~~eeL~~~S~eL~~~~e---------~rd~L~kEL~d~YKK~E~t~~eL-----~~e 484 (651)
..+..++..+++++.+ .+.++-.--.+|...-. .+.++-+++-++-++++.+.+-| .+=
T Consensus 197 ~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~ 276 (560)
T PF06160_consen 197 EKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEV 276 (560)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777776665554 44444333333333221 13345555555555555555543 344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhh-----------------hccccc
Q 036820 485 KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKAN-----------------SQISNL 547 (651)
Q Consensus 485 kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~an-----------------s~issl 547 (651)
+..+..+..+++.|-..+.++-+||+..+..+..-..-++.+.++.-.|..+++..+ .++..|
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l 356 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKEL 356 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 667888899999999999999999999999999999999999999999888887654 356677
Q ss_pred hhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820 548 EDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 548 e~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
+..-..+...+.++...-.+.++.+++...-+..+..+=..|-.....|..+-..|+-.+.+++..+...+-.+
T Consensus 357 ~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 357 EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888899999999999999999999999999999888888888888777776665544
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.92 E-value=0.058 Score=51.12 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhh---hHHhhhhhhhhhhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLD---RIEGLQDKINLLSLE 232 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~---~i~~Lq~kinLLs~e 232 (651)
-....++...+...+..+-.+......-|..+...+..+...|..++..+..+...+.+.=. ..+.|+.||.+|-.+
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 34556777777777777777777777777777777777777777777777777777766543 356899999999999
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820 233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk 295 (651)
+...+..+...+-.|.+-..... .+=-+|..|-.+++..+.|++.+.+.|.+.|
T Consensus 89 le~ae~~L~e~~ekl~e~d~~ae---------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 89 LEEAEKKLKETTEKLREADVKAE---------HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999888777654333222 2345699999999999999999999999875
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.92 E-value=0.42 Score=57.67 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=61.6
Q ss_pred HHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-----hhhhhhhhhHhcccchHHH
Q 036820 209 EEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-----ELNARASSLLVERDDSKQK 283 (651)
Q Consensus 209 e~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-----~Ln~~v~sL~~ek~~~~~k 283 (651)
..+|..-.+.|-..|+|+.-|...++.+...+......|+++|+.+..+..--+-. ++-..|..+-.+.++.+.+
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888899999999999999999999999999999999888876544333 3444455555555555555
Q ss_pred HHHHHHHHHHhh
Q 036820 284 LEAVQKEYKELK 295 (651)
Q Consensus 284 ~~~l~key~~lk 295 (651)
+..++-.|..+|
T Consensus 360 ~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 360 IREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 59
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.79 E-value=0.04 Score=59.36 Aligned_cols=139 Identities=23% Similarity=0.308 Sum_probs=86.9
Q ss_pred CchhhHHHHHhhhhhhhH---hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHH
Q 036820 90 PRSGVLGALYALTQNEKK---ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSA 166 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~ekk---a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSL 166 (651)
|--.-+|-+|++..+|+. |+.--+..-..|+-|+-..+--..+..+ +.|.=++||..-
T Consensus 47 ~~iss~gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~-------------------e~q~e~~qL~~q 107 (401)
T PF06785_consen 47 SIISSLGWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVE-------------------ERQQESEQLQSQ 107 (401)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------HHHHHHHHHHHh
Confidence 444568999999998864 4444444444555555544433333333 233333444333
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS 246 (651)
Q Consensus 167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss 246 (651)
+. .+.++.-++++-+++++.+++.+++-+..-=+.=.-||-+++-+.++.+.||+..+.||--
T Consensus 108 nq-----------------kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 108 NQ-----------------KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HH-----------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 33 3333333344444444444444444444433444556667778999999999999999999
Q ss_pred hhhhHHHhhhhHhhhhhh
Q 036820 247 LQQKETELKNLNSVYKQN 264 (651)
Q Consensus 247 La~KE~e~~nL~~~y~qt 264 (651)
|++--.--+-|+.-|+-|
T Consensus 171 LaE~layqq~L~~eyQat 188 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQAT 188 (401)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999988889999999988
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.75 E-value=2.4 Score=52.16 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHH---HHHHHHHhHhhHH
Q 036820 403 IRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKE---LVNIYKKAEATAN 479 (651)
Q Consensus 403 l~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kE---L~d~YKK~E~t~~ 479 (651)
...+..++...+.+.+..-+.--+.+.-++..+++ +++.+.+...-+-.= .. ...+..+ +.+-|+...+...
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~--~~--e~~~e~~lk~~q~~~eq~~~E~~ 691 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKE--AL--EIKLERKLKMLQNELEQENAEHH 691 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555565556666677778888888 777777655433321 11 1112222 2222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhh
Q 036820 480 DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATK 521 (651)
Q Consensus 480 eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~ 521 (651)
.+ ++..- ..+.+.+++-+.-++.||--++.++-+.|.
T Consensus 692 ~~----~L~~~-e~~~~e~~~~lseek~ar~k~e~~~~~i~~ 728 (1317)
T KOG0612|consen 692 RL----RLQDK-EAQMKEIESKLSEEKSAREKAENLLLEIEA 728 (1317)
T ss_pred HH----HHhhH-HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 11 11111 445566666677778888777766555443
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.55 E-value=0.43 Score=49.31 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=120.4
Q ss_pred HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG 430 (651)
Q Consensus 351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~ 430 (651)
||.+...+ .+..-.-+++|.+.+++...+...+.....--.+++.||+.++.++.++.+.+.+- +-+..+--=..
T Consensus 15 lD~e~~rl---~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~--e~kl~~v~~~~ 89 (239)
T COG1579 15 LDLEKDRL---EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA--EEKLSAVKDER 89 (239)
T ss_pred HHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHH
Confidence 45554443 34444667788888888888888888888888888888888888888877765331 22222222334
Q ss_pred hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Q 036820 431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK 510 (651)
Q Consensus 431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk 510 (651)
|+..+.-=+...++......++|+-+.+....|++++.+.-.++..+-+.+.+.+. ++.-++..+.++..--..-|-
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~~~~~~~~~ 166 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEGQELSSKRE 166 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556666777777788888888888888888888888888888877765 455677778887777778888
Q ss_pred hHHHhHHHHhhhHHHhhhh
Q 036820 511 SLETDLEEATKSLDEMNRN 529 (651)
Q Consensus 511 ~Le~dLeeaT~SldEmn~~ 529 (651)
.|..+|+..+=+.=|+.++
T Consensus 167 ~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 167 ELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHhcCHHHHHHHHHHHh
Confidence 8888888887777777654
No 62
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.27 E-value=3.9 Score=48.96 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.4
Q ss_pred cchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhh
Q 036820 546 NLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRS 593 (651)
Q Consensus 546 sle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~ 593 (651)
-.+.|-+||.-.+.-|++.+.+-.|.+-.-|- -+-.||+.+-.|.
T Consensus 480 KVeqe~emlKaen~rqakkiefmkEeiQethl---dyR~els~lA~r~ 524 (1265)
T KOG0976|consen 480 KVEQEYEMLKAENERQAKKIEFMKEEIQETHL---DYRSELSELAHRK 524 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcc
Confidence 46778889999999999988888777766663 3445666555543
No 63
>PRK09039 hypothetical protein; Validated
Probab=96.25 E-value=0.24 Score=52.71 Aligned_cols=141 Identities=20% Similarity=0.279 Sum_probs=98.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhh
Q 036820 228 LLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASN 305 (651)
Q Consensus 228 LLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~d 305 (651)
.|+++|.+.+..+..|++-++. +-.+-++..++ +|..+|..|-.....++..-..++..|...
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~----------- 107 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE----LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL----------- 107 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Confidence 4677777777777777777665 33333333333 666777777776667777777777777732
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHH
Q 036820 306 AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQ 385 (651)
Q Consensus 306 a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~ 385 (651)
..-..+-+..+.+|...|......++..+.-|.-|+++.+.+|+- .-.|...|...++...+.+....+|...
T Consensus 108 ~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 108 AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345567788889999999999999999999999999999988 3445666666666666666666666666
Q ss_pred HHHHH
Q 036820 386 LKQSK 390 (651)
Q Consensus 386 L~~~~ 390 (651)
|+.+.
T Consensus 181 L~~a~ 185 (343)
T PRK09039 181 LNVAL 185 (343)
T ss_pred HHHHH
Confidence 65554
No 64
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.12 E-value=3.8 Score=47.40 Aligned_cols=268 Identities=18% Similarity=0.262 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhH---------HH
Q 036820 137 KLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDK---------RT 207 (651)
Q Consensus 137 RLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedk---------d~ 207 (651)
=|+.++.+++..+...+++...+-+++..+...|..+..+....-..|.++...+..+++.+...-..- ..
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~ 84 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ 84 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH
Confidence 367788888888888888888899999999999999998888888888888888888887665221100 01
Q ss_pred HHH---HHHHhhhhHHh-hhh---hhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhhhhhhhhHhcccc
Q 036820 208 LEE---ERKQKLDRIEG-LQD---KINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELNARASSLLVERDD 279 (651)
Q Consensus 208 Ae~---eLeeKl~~i~~-Lq~---kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~ 279 (651)
++. .|+..++.+.. |+. .-.-||.-+..++.++.+|--.|-..+.+.....++..+- +=...++.-+.-+-+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~e 164 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRE 164 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHH
Confidence 111 12222222211 111 0122333334444444444333333222221111111100 223346677777888
Q ss_pred hHHHHHHHHHHHHHhhhch-hhhhhhhhhhhh--HhHHHHHHHHHHHHHHHhH-hhhchhHHHh----------hh----
Q 036820 280 SKQKLEAVQKEYKELKLSS-ENETASNAKRLR--EKKEELHQLKEKLELTLDE-ACENRATIAK----------FT---- 341 (651)
Q Consensus 280 ~~~k~~~l~key~~lk~ss-E~~aa~da~lL~--eke~~l~qLeekl~~Al~e-~~k~~~~Ia~----------L~---- 341 (651)
.+++|.+++.-|..|--.. |..-+.+++.-. +-...|++|+++|..--.- ..|+...|.= |.
T Consensus 165 LK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a 244 (617)
T PF15070_consen 165 LKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999888777664221 224555554322 2233444444444332110 0222222211 11
Q ss_pred --hhHHHHHHHHHHhhhh----hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 036820 342 --QEKDDLRKMLDNELGN----VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIR 404 (651)
Q Consensus 342 --~e~~~~r~mLd~E~~~----~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~ 404 (651)
+-+..-+..|-.++-- +..|.|+-.-..-+++-.+.|.....+.|..+..-|+.|.+++|-+.
T Consensus 245 ~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~ 313 (617)
T PF15070_consen 245 AYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMA 313 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 1112223333333322 22333332222356677888888888889999999999999998643
No 65
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=5.2 Score=48.70 Aligned_cols=302 Identities=22% Similarity=0.248 Sum_probs=152.3
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh-hh
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV-QK 242 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i-~~ 242 (651)
++....++.+...+|.+.+-+.........+...+..+.+.+.+.+..+.-|-..++.+.-.+.-+....+..|..+ .+
T Consensus 695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~se 774 (1200)
T KOG0964|consen 695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSE 774 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 33444445555555555555555555555555555555555555555555555544444433333333333322111 12
Q ss_pred hhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHH
Q 036820 243 LSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEK 322 (651)
Q Consensus 243 l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeek 322 (651)
|.|-|+. +--.+|.+|+-+-+....|+.+|..+-.++-. .+++..+.|-..-....++|
T Consensus 775 l~sqLt~---------------ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~---rk~~le~~l~~kL~~r~~~l--- 833 (1200)
T KOG0964|consen 775 LFSQLTP---------------EELERLSKLNKEINKLSVKLRALREERIDIET---RKTALEANLNTKLYKRVNEL--- 833 (1200)
T ss_pred HHhhcCH---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHH---
Confidence 2222222 33356888888888888888888877665322 23333333322222222222
Q ss_pred HHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 036820 323 LELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISR 402 (651)
Q Consensus 323 l~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qisk 402 (651)
..-|++++ ...+.+++..++--|...-.++-..-.+|..+.+.-.+..++|..
T Consensus 834 -----------~~ei~~~~----------------d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~ 886 (1200)
T KOG0964|consen 834 -----------EQEIGDLN----------------DSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKE 886 (1200)
T ss_pred -----------HHHhhhcc----------------cccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222222 233455555555555555555555566666666667777777777
Q ss_pred HHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHH----hhhhhhHHHHHHHHHhHhhH
Q 036820 403 IRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAE----NRDSLRKELVNIYKKAEATA 478 (651)
Q Consensus 403 l~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e----~rd~L~kEL~d~YKK~E~t~ 478 (651)
+..++..++.. ++-.... .--..--..++.-+.+|-+-++|+.--..+|...-+ +-.+.. .-...||+..-.
T Consensus 887 ~~~~lE~~~~l-ek~~~~~-~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~--~~el~kkL~~~n 962 (1200)
T KOG0964|consen 887 IKKELEKAKNL-EKEKKDN-INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKK--SKELMKKLHRCN 962 (1200)
T ss_pred HHHHHHHHHHH-HHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCC--HHHHHHHHHHHH
Confidence 77766655432 1111111 000011234566777888878877766666654322 111111 112345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHH
Q 036820 479 NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLD 524 (651)
Q Consensus 479 ~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~Sld 524 (651)
.+|+.=..+ || .|| .|...=.|-|.+|..-.+|--+|-|
T Consensus 963 eelk~ys~V----NK--kAl-dQf~nfseQre~L~~R~eELd~s~~ 1001 (1200)
T KOG0964|consen 963 EELKGYSNV----NK--KAL-DQFVNFSEQRESLKKRQEELDRSKD 1001 (1200)
T ss_pred HHHhhcchh----hH--HHH-HHHHHHHHHHHHHHHHHHHhccchh
Confidence 555443333 32 233 4666778888888877776555544
No 66
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.05 E-value=4.5 Score=47.69 Aligned_cols=270 Identities=23% Similarity=0.297 Sum_probs=158.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK 255 (651)
Q Consensus 176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~ 255 (651)
++-..+--+..+..+++-+.+.+..+..+++.++.+|+|-|+++..=.+-=+-|.-|+.. |-
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~------------------~~ 183 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ------------------HL 183 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence 344455556667777888889999999999999999999999998766655555555432 12
Q ss_pred hhHhhhhhhhhhhhhh---------------------------------------------------------hhHhccc
Q 036820 256 NLNSVYKQNELNARAS---------------------------------------------------------SLLVERD 278 (651)
Q Consensus 256 nL~~~y~qt~Ln~~v~---------------------------------------------------------sL~~ek~ 278 (651)
|.+++|.-.+|+-.+. -|.+|-+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~ 263 (717)
T PF09730_consen 184 NIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELN 263 (717)
T ss_pred CccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcc
Confidence 3333332222222221 2222211
Q ss_pred chHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHH---HHHHHHHHHhHhhhchhHHHhhhhhHHHHHHH-----
Q 036820 279 DSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ---LKEKLELTLDEACENRATIAKFTQEKDDLRKM----- 350 (651)
Q Consensus 279 ~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~q---Leekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m----- 350 (651)
+++|+|==..|.-.. +||-..++. +.-+|..+-++.+.-+..|..|+..+++++.+
T Consensus 264 -----~~EiqKL~qQL~qve-----------~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke 327 (717)
T PF09730_consen 264 -----LSEIQKLKQQLLQVE-----------REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKE 327 (717)
T ss_pred -----hHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 222322222222111 222223332 33467777788888889999999888888873
Q ss_pred ----HHHhhhhhhhh---HHH-----HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcch
Q 036820 351 ----LDNELGNVKNL---KYE-----LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL 418 (651)
Q Consensus 351 ----Ld~E~~~~k~L---~~~-----lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l 418 (651)
.|.+-....+= -|+ +.+-+--+...-+++.+|..+|+.++.-+..++.....-..-|..--+.|.+++
T Consensus 328 ~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl 407 (717)
T PF09730_consen 328 QQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKL 407 (717)
T ss_pred hhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111110 011 233455566677788888888888877777777766655555555555555555
Q ss_pred HHHHh-------hhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh------------hHHHHHHHHHhHhhHH
Q 036820 419 DEAKR-------SGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL------------RKELVNIYKKAEATAN 479 (651)
Q Consensus 419 ~eak~-------~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L------------~kEL~d~YKK~E~t~~ 479 (651)
.-.+. ....|=+||-.+..+...++..|-.+-.+|+++++.-..| ++=++|.|++.-.+..
T Consensus 408 ~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~ 487 (717)
T PF09730_consen 408 MSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRR 487 (717)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhc
Confidence 55554 4455667777777776666666666666666665544333 3446788888766553
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.81 E-value=7.1 Score=47.95 Aligned_cols=110 Identities=26% Similarity=0.387 Sum_probs=64.4
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHH-H
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAK-E 437 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~k-e 437 (651)
..|+..++..+..|....++...++++|...+..-..+..+++..+.+..-.+..+++-..+.. .+-.++...+ +
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~ 678 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE----QLKQEIEEAKEE 678 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3677778888888888888888888888887777777777777777776666555444333332 2222222222 2
Q ss_pred HHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q 036820 438 VLKKASEELQNVSHELEATAENRDSLRKELVNIYK 472 (651)
Q Consensus 438 ~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YK 472 (651)
-..+.+..+.....++.........+..++-+.++
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~ 713 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLK 713 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444445555555444444444444443
No 68
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.71 E-value=2.4 Score=42.44 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=106.8
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 036820 113 LEYMKARLKEKEAAIVSLEKDFESK-LQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEI 191 (651)
Q Consensus 113 iesm~~kL~e~Eaa~~~lDedFEkR-LKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eI 191 (651)
|-...+.+.+...-+.-+. .|.+ |+.+|....+-+.+|-+.+.-|=..|..-++.|..+...|++.++...++...+
T Consensus 14 i~~L~n~l~elq~~l~~l~--~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELR--KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444333332 2333 567777777778888888999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhHHHHHHHHH-HhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 192 DSLQTSLLKFGEDKRTLEEERK-QKLDRIEGLQDKINLLSLELREKDDGVQKLSSS 246 (651)
Q Consensus 192 eql~ssLsqAEedkd~Ae~eLe-eKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss 246 (651)
...+..+-.+.+.+..+..-.. -.|...+-|+.++.-+...+.+++..|+.|.-.
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877666 368889999999999999999999999998653
No 69
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.62 E-value=0.65 Score=50.36 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=43.4
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhh
Q 036820 310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNV 358 (651)
Q Consensus 310 ~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~ 358 (651)
..-..+|.+|+.++......-..++..+.++..+++.++.-+..|+..+
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~ 298 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAK 298 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcccc
Confidence 3446779999999999999999999999999999999999999998653
No 70
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.61 E-value=6.2 Score=45.87 Aligned_cols=282 Identities=22% Similarity=0.230 Sum_probs=166.2
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820 335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLE--KQLKQSKDSCADLETEISRIRAEFAEVKH 412 (651)
Q Consensus 335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~--~~L~~~~~~~~~L~~qiskl~~E~~e~ke 412 (651)
+.+.=..--++.+.+-||.++..+.+--+..+....-|...++++-+.. .-+..++.+..-...+|--|+.-...+-.
T Consensus 8 ~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~ 87 (629)
T KOG0963|consen 8 VTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEA 87 (629)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444556778888888887766666555555555555555554443 23455666666666777666654443332
Q ss_pred HHhc---chHHHH-------------hhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHh
Q 036820 413 TLGN---SLDEAK-------------RSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEA 476 (651)
Q Consensus 413 ~l~~---~l~eak-------------~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~ 476 (651)
++-+ +|-+|= -..+-.+.|.--.++-|.+-..++...=++=+.|.-..+.+.|...-.--..+.
T Consensus 88 afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~ 167 (629)
T KOG0963|consen 88 AFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN 167 (629)
T ss_pred HHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2211 111100 000003444555555555555555555444455555555555543333223332
Q ss_pred hHHH----HHHH-HHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH------------HHHhHHHhh
Q 036820 477 TAND----LKEQ-KEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA------------LELSKNLEK 539 (651)
Q Consensus 477 t~~e----L~~e-kkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~------------~~LS~~Le~ 539 (651)
.+++ +-++ ...-+-|-.+.+++.+|+..-..-=.+|+.+++..-..+-+ +++. -.+-.+|+.
T Consensus 168 ~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~-~~s~~dee~~~k~aev~lim~eLe~ 246 (629)
T KOG0963|consen 168 AANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD-LKSKYDEEVAAKAAEVSLIMTELED 246 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2222 2211 12333444555556666555555555666666554444433 2222 244568999
Q ss_pred hhhccccchhHHHHHHHhHHHHHhhhHHHh-------------------hchHHHHHHHHHhhhhhhhhhHhhhhhHHHH
Q 036820 540 ANSQISNLEDEKAVLYKSLTEQKSIANESR-------------------ENMEDAHNLVMRLGQERKSLDKRSKKLEEEL 600 (651)
Q Consensus 540 ans~issle~eKevL~ksl~eqk~~t~EAq-------------------eN~eDA~nli~~Lg~ERE~~e~r~kkLEeEL 600 (651)
||++|-.+|.|.+.|...+..+...+.-++ .=..|-|++=..+..|||+.---...||-++
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776665551 1234566677778889999999999999999
Q ss_pred hhcccchhhhhhccccc
Q 036820 601 ASAKGEILRLRSQINSS 617 (651)
Q Consensus 601 AsAKGEiLrLR~qi~ss 617 (651)
-+..|+|=-|+.+.++-
T Consensus 327 ~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 327 KAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999988764
No 71
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=6.7 Score=46.17 Aligned_cols=224 Identities=20% Similarity=0.239 Sum_probs=135.6
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLS 244 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~ 244 (651)
+.+.+.+-+...+....+-..+++..+.++++++....+-.+..+..++..=..|.-++..++.-..++++.-..+++.-
T Consensus 134 ~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 134 QCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777788888888888888888888888888888888888888888888888888888888877
Q ss_pred hhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHh----hhchhhhhhhhhhhh-------hHhH
Q 036820 245 SSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL----KLSSENETASNAKRL-------REKK 313 (651)
Q Consensus 245 SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~l----k~ssE~~aa~da~lL-------~eke 313 (651)
-+|.+--...+-......|+..+..+..++..-.+--+.+..+.+.|.++ +.++|.++.. ++| ..|=
T Consensus 214 ~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv--~~LqeE~e~Lqskl 291 (716)
T KOG4593|consen 214 ASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETV--GLLQEELEGLQSKL 291 (716)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHH
Confidence 77777666666666666677666666666665555555666666666544 4444544432 222 2222
Q ss_pred HHHHHHHHHHHHHHhHhhhchhHHHhhhh------------hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhH
Q 036820 314 EELHQLKEKLELTLDEACENRATIAKFTQ------------EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASD 381 (651)
Q Consensus 314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~------------e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~ 381 (651)
.++|-|..++ ++--=.|-.+...|+. -.+++-.-+.+|..++++|..-. -++.-.++=+..
T Consensus 292 ~~~~~l~~~~---~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~----~t~~s~~~~~~r 364 (716)
T KOG4593|consen 292 GRLEKLQSTL---LGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKN----STVTSPARGLER 364 (716)
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhcccc----ccccCcccchHH
Confidence 2233332222 2222223333333332 12334444555666665555433 234445555566
Q ss_pred HHHHHHHHHhhhhHHH
Q 036820 382 LEKQLKQSKDSCADLE 397 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~ 397 (651)
....|.+..+.|..+.
T Consensus 365 ~~q~lke~~k~~~~it 380 (716)
T KOG4593|consen 365 ARQLLKEELKQVAGIT 380 (716)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666555443
No 72
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=4.1 Score=49.78 Aligned_cols=294 Identities=21% Similarity=0.273 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
|.-=+|+|-..+.+|.....++++-+..+..-..+|..++..+.-+..+....+..|......+...++-|+-.--+|.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~- 728 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS- 728 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH-
Confidence 3445788888888888888877776666666666777777666666555555555444444333333332221111111
Q ss_pred hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHH-HHHHhhhchhhhhhhhhhhhhHhHH
Q 036820 236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQK-EYKELKLSSENETASNAKRLREKKE 314 (651)
Q Consensus 236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~k-ey~~lk~ssE~~aa~da~lL~eke~ 314 (651)
++-.+++..-...++..++.+.++- =|.++-..-= .. ++ +.
T Consensus 729 -----------------------------~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig------v~-ir--~Y 770 (1141)
T KOG0018|consen 729 -----------------------------EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG------VR-IR--EY 770 (1141)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------ee-ee--hH
Confidence 2222333344444455555554432 2444322100 00 11 11
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
+=+++ +..+|+=..|+++-..-|.+.+.-.++ +-|+..++..+..|+++..+++....--.
T Consensus 771 ee~~~--------------~~~~a~k~~ef~~q~~~l~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~ 831 (1141)
T KOG0018|consen 771 EEREL--------------QQEFAKKRLEFENQKAKLENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEE 831 (1141)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHhhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 11222 344666677888888888888888877 77899999999999999999988766433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
-....|. |..++.. ++ ++..+-.-+|+-.++.+++....++.....++.++...++-+.-|-.++..+.
T Consensus 832 ~~~k~i~----e~~~~e~---k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~c 900 (1141)
T KOG0018|consen 832 AAEKIIA----EIEELEK---KN----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKC 900 (1141)
T ss_pred HHHHHHh----hHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3333333 3333333 11 77888888999999999999999999999999999999999999999988875
Q ss_pred Hh----------hHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHH
Q 036820 475 EA----------TANDLKEQKEI-VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533 (651)
Q Consensus 475 E~----------t~~eL~~ekki-v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~L 533 (651)
.- +-++.+.==.| -..|-+++. |+.+|+|-+.-|+.|--|+-.|
T Consensus 901 kl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~---------------L~~kl~e~~~~l~~~~Pn~kA~ 955 (1141)
T KOG0018|consen 901 KLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK---------------LQQKLEEKQSVLNRIAPNLKAL 955 (1141)
T ss_pred hhccccccccCCCccccceecccccccccHHHH---------------HHHHHHHHHHHHHHhCcchHHH
Confidence 42 22232220011 123445544 8999999998888886665443
No 73
>PRK09039 hypothetical protein; Validated
Probab=95.50 E-value=1.1 Score=47.89 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=43.4
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA 408 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~ 408 (651)
-=|++++..-++.|.....++++|++.|.--+..+.+|+..|..++..+.
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34678888888889999999999999999999999999999999888877
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.44 E-value=9.2 Score=46.79 Aligned_cols=320 Identities=18% Similarity=0.172 Sum_probs=182.4
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH-------HHHHHHHhHHHHHH
Q 036820 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMN-------KLNSANTTISGLGK 175 (651)
Q Consensus 103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlD-------QLnSLnsTLtSL~k 175 (651)
.+.-.++.++-+-|+..|.--+|--.- -.||..+...+.+++++-- -.+.++.-.. +|...+..|...|.
T Consensus 270 kedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~dm~~-erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 270 KEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDDMRS-ERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344567777888888887666554322 5678888888888777761 0111222222 33444567777888
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK 255 (651)
Q Consensus 176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~ 255 (651)
.+++....-+..+.-.......++..+-.+-.++. .+++..++-+|.. .+.++-|.-.+++.+.+
T Consensus 347 llq~~se~~E~en~Sl~~e~eqLts~ralkllLEn--rrlt~tleelqss-------------s~Ee~~SK~leleke~K 411 (1195)
T KOG4643|consen 347 LLQIFSENEELENESLQVENEQLTSDRALKLLLEN--RRLTGTLEELQSS-------------SYEELISKHLELEKEHK 411 (1195)
T ss_pred HhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHh--HHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHhH
Confidence 88887666677777777777777763333333322 3556666665543 34555566666666666
Q ss_pred hhHhhhhhh------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHH
Q 036820 256 NLNSVYKQN------------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKL 323 (651)
Q Consensus 256 nL~~~y~qt------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl 323 (651)
||..-+.+- +|-..-.-|.+|++.+.+.++..++-|..- .++.+-.+++.-+-+|+
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq------------~~e~e~~~q~ls~~~Q~ 479 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ------------SLENEELDQLLSLQDQL 479 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHhHHHHHHHHHHHHH
Confidence 665544432 111112234445554444444444444332 33444444444444444
Q ss_pred HHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Q 036820 324 ELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRI 403 (651)
Q Consensus 324 ~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl 403 (651)
..-..+. +.-|-.|+.-+.+-..|+.+=..-...|+..++--...++.--+..-.|+..+--...-|..|.-||+.|
T Consensus 480 ~~et~el---~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 480 EAETEEL---LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4333332 2236677777777777776666666777777777777777776777777776666666677777777665
Q ss_pred HHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 404 RAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 404 ~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
--= ..-...|..++.+ +| --..++..+.+-|.+..-.++.|.+|..|-|+--
T Consensus 557 k~t-~qn~~~LEq~~n~---------------lE---~~~~elkk~idaL~alrrhke~LE~e~mnQql~~ 608 (1195)
T KOG4643|consen 557 KTT-SQNGALLEQNNND---------------LE---LIHNELKKYIDALNALRRHKEKLEEEIMNQQLFE 608 (1195)
T ss_pred HHH-hHHHHHHHHhhhH---------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 321 1111112211111 12 1234566667777777778888888888877643
No 75
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.21 E-value=8.9 Score=45.26 Aligned_cols=369 Identities=21% Similarity=0.313 Sum_probs=184.0
Q ss_pred HHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHH
Q 036820 207 TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEA 286 (651)
Q Consensus 207 ~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~ 286 (651)
.++.-|.-....++-+.|.++.|.-++..|-..+.+..-.-.-||.++.-|..+.... +.|+-++..++.=..+
T Consensus 360 ~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~------qkll~ekk~~eki~E~ 433 (786)
T PF05483_consen 360 NLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEK------QKLLDEKKQFEKIAEE 433 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555555555555443322 1233333333222222
Q ss_pred HHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhh-hhhhhhHHHH
Q 036820 287 VQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNEL-GNVKNLKYEL 365 (651)
Q Consensus 287 l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~-~~~k~L~~~l 365 (651)
++---.+| ..+|.-++.++|.|+.+|.++.---...-.-+.+|..+++.- ++=..|+ .+.+.|.-+-
T Consensus 434 lq~~eqel-----------~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~E-kLKN~ELt~~~nkLslEk 501 (786)
T PF05483_consen 434 LQGTEQEL-----------TGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQE-KLKNTELTVNCNKLSLEK 501 (786)
T ss_pred HHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 22111111 246788999999999999988765444444455555554432 2333344 3333333221
Q ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHH
Q 036820 366 QITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEE 445 (651)
Q Consensus 366 q~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~ee 445 (651)
..-+---.+---++.++.+.++.++..--. +...|+.-+.....|-.||-++++-+++..+|
T Consensus 502 k~laQE~~~~~~elKk~qedi~~~k~qee~------------------~~kqie~Lee~~~~Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 502 KQLAQETSDMALELKKQQEDINNSKKQEEK------------------MLKQIENLEETNTQLRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111112222333333333322222 23333333333444556777777777777776
Q ss_pred HHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhh---HHHHHH---H-HHHHHHHHHHHHHHHHHhhhhHHHh-------Hh
Q 036820 446 LQNVSHELEATAENRDSLRKELVNIYKKAEAT---ANDLKE---Q-KEIVSSLNKELQALEKQTSKDKEAR-------KS 511 (651)
Q Consensus 446 L~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t---~~eL~~---e-kkiv~tLn~eL~al~~Q~~~d~EaR-------k~ 511 (651)
+...... .-++..+..-|...--|.+-.. -+-|.. . .+..--|-.+-.+|.||+.++.--- ..
T Consensus 564 v~~kl~k---sEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~ 640 (786)
T PF05483_consen 564 VKCKLDK---SEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNK 640 (786)
T ss_pred HHHHhhh---HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554332 2233333333333222222111 111111 0 1122235556667777777665433 34
Q ss_pred HHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHH----HHHHhHHHHHhhhHHHhhchHHHHHHH--------
Q 036820 512 LETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA----VLYKSLTEQKSIANESRENMEDAHNLV-------- 579 (651)
Q Consensus 512 Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKe----vL~ksl~eqk~~t~EAqeN~eDA~nli-------- 579 (651)
|+-+++-+-+-.+||..+ +=++|+.-..--+.|..|-+ +-..|+--|+.+---.|--|.|---|+
T Consensus 641 L~~E~e~~kk~~eE~~~~---~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYD 717 (786)
T PF05483_consen 641 LQEELENLKKKHEEETDK---YQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYD 717 (786)
T ss_pred HHHHHHHHHhHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 667777777777787664 55677765555555555543 334455555555555555555544333
Q ss_pred -----------HHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccccc
Q 036820 580 -----------MRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSK 618 (651)
Q Consensus 580 -----------~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~ 618 (651)
++--+|-|.+- --+-||-||.+-|.||.-|+-|.-.-.
T Consensus 718 kiVEEkDaEL~~~k~KE~E~~s-~k~sLE~ELs~lk~el~slK~QLk~e~ 766 (786)
T PF05483_consen 718 KIVEEKDAELGLYKKKEQEQSS-HKASLELELSNLKNELSSLKKQLKTER 766 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33345555554 234689999999999999998875543
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.18 E-value=1.5 Score=45.36 Aligned_cols=158 Identities=21% Similarity=0.346 Sum_probs=116.9
Q ss_pred hhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820 269 RASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348 (651)
Q Consensus 269 ~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r 348 (651)
.++.|..+++...-++..+++.|...++ |.-++.|. +..++.++.-++.+ .+....-|.+++..+++++
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~--e~e~~~~~--~~~~~~e~e~le~q-------v~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKA--ELEALNKA--LEALEIELEDLENQ-------VSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888876654 33333332 23444444444443 4555666777777777777
Q ss_pred HHHHHhh--hhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhh
Q 036820 349 KMLDNEL--GNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGE 426 (651)
Q Consensus 349 ~mLd~E~--~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~ 426 (651)
..+++-- ...+.|-++++..++.....+.++.+|-+.+......-..|...+.++...|.+.+..+...+..+...+.
T Consensus 80 ~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 80 EKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7774322 23467888999999999999999999999999999999999999999999999999999998888888888
Q ss_pred hhhhhHHhHHH
Q 036820 427 VLAGELFAAKE 437 (651)
Q Consensus 427 ~Ls~El~s~ke 437 (651)
.+.++-+.+++
T Consensus 160 ~~~~~~~~L~~ 170 (239)
T COG1579 160 ELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHH
Confidence 77776655543
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.03 E-value=15 Score=46.77 Aligned_cols=105 Identities=11% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e 232 (651)
..++-.+++.....+.........|...+.........+..+..++...+...+.++.-+...-+ +..++.++..+..+
T Consensus 278 ~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~ 356 (1486)
T PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQAD 356 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555555555555555544444444333322 22345555555555
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhH
Q 036820 233 LREKDDGVQKLSSSLQQKETELKNLN 258 (651)
Q Consensus 233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~ 258 (651)
+++....+++....+.+.+.++..+.
T Consensus 357 LeELee~Lee~eeeLeeleeeleele 382 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENE 382 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444443
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.92 E-value=14 Score=45.94 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=33.4
Q ss_pred ccccchhHHHHH----HHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhH-hhhhhHHHH
Q 036820 543 QISNLEDEKAVL----YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDK-RSKKLEEEL 600 (651)
Q Consensus 543 ~issle~eKevL----~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~-r~kkLEeEL 600 (651)
.|+-||...+-| -.++.|=...-.+...-..++.+...++-.=|+.++- |.+.|.|=+
T Consensus 1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm 1141 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFM 1141 (1293)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 3455566666666777777777777777666666643 334444433
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=9.9 Score=45.68 Aligned_cols=308 Identities=21% Similarity=0.240 Sum_probs=161.5
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhh
Q 036820 299 ENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNE 378 (651)
Q Consensus 299 E~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e 378 (651)
=.+-+.|-+. -+..++||.-+..|++-...-.. -|+.-+..-+-+|+=+...|.+.-+++-+-+.|.. .
T Consensus 611 ~~k~~lD~~f----~kL~kele~~i~k~ls~~~eee~----~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ---~ 679 (970)
T KOG0946|consen 611 NTKLALDFEF----KKLFKELEGLIAKLLSSKTEEEE----QTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ---M 679 (970)
T ss_pred CchhhhhHHH----HHHHHHHHHHHHHHhcCCCccch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---H
Confidence 4455666544 45677888888888765433221 12222233334444444455555444444444433 4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG------NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHE 452 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~------~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~e 452 (651)
...|+.+-.+...--++...+.|.+.+++.-.|-.|. +.+-+.-.+.+..-.||.++..--++..-+.+-...+
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~ 759 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE 759 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666665555554 1222222334444556666666555555555555555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHhhH------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHh
Q 036820 453 LEATAENRDSLRKELVNIYKKAEATA------NDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEM 526 (651)
Q Consensus 453 L~~~~e~rd~L~kEL~d~YKK~E~t~------~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEm 526 (651)
|..--.-+.+.++.-.++--+--+.+ ...+++.+=.++...-++.+..++...++.-..+-.-...+-.++++|
T Consensus 760 L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 760 LNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 53333333444443332221111111 122222222566667778888888888888888888889999999999
Q ss_pred hhhHHHHhHHHhhhhhccccchhHHHHH---HHhHHHHHhhhHHHhhchHHHHHHHHHhh-hhhhhhhHhh-------hh
Q 036820 527 NRNALELSKNLEKANSQISNLEDEKAVL---YKSLTEQKSIANESRENMEDAHNLVMRLG-QERKSLDKRS-------KK 595 (651)
Q Consensus 527 n~~~~~LS~~Le~ans~issle~eKevL---~ksl~eqk~~t~EAqeN~eDA~nli~~Lg-~ERE~~e~r~-------kk 595 (651)
-.---++|+++..+.-+.|++..+-.-+ -+.++|-..+ -+||. |+-+|+.-+- .+-++++-+. +.
T Consensus 840 ~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~s-l~~qa---dse~l~ka~~~~k~~nl~lki~s~kqeqee 915 (970)
T KOG0946|consen 840 GSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISS-LEAQA---DSETLSKALKTVKSENLSLKIVSNKQEQEE 915 (970)
T ss_pred hccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh-HHHhh---cchHHHHHHHHhhcccchhcccchhhhHHH
Confidence 8887888888887777666666443222 2333332222 22332 2333333221 1112221111 11
Q ss_pred hHHHHhhcccchhhhhhccccccCcc
Q 036820 596 LEEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 596 LEeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
|==++|.-+--|.-||.-+.--+.++
T Consensus 916 ~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 916 LLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 22245666666777777777666666
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.65 E-value=2.4 Score=40.44 Aligned_cols=95 Identities=29% Similarity=0.344 Sum_probs=78.3
Q ss_pred HhHHHhHHHHhhhHHHhhhhHHHHh---HHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhh
Q 036820 510 KSLETDLEEATKSLDEMNRNALELS---KNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQER 586 (651)
Q Consensus 510 k~Le~dLeeaT~SldEmn~~~~~LS---~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ER 586 (651)
..||.|||.+...|.+.+...-.-. ...+..+.||..||+|-+-..+.|.+-...-.+|-...+..-.-|..|..+|
T Consensus 45 ~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 3466666666666666655544333 3466899999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhHHHHhhcc
Q 036820 587 KSLDKRSKKLEEELASAK 604 (651)
Q Consensus 587 E~~e~r~kkLEeELAsAK 604 (651)
..+|.|.--|+.-+..||
T Consensus 125 ~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 125 DQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988887765
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=16 Score=45.38 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 132 KDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 132 edFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
+........-|.++.+|.......+..|-+.+.++...-..+..+...+...+...-.++.++++.+..++...+.+...
T Consensus 436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666655555666677777777777777777777777777777777777777777777777766666
Q ss_pred HHHhhhhHHhhhhhhhhhhhhh-------hhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHH
Q 036820 212 RKQKLDRIEGLQDKINLLSLEL-------REKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKL 284 (651)
Q Consensus 212 LeeKl~~i~~Lq~kinLLs~e~-------~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~ 284 (651)
-..-+..++-|+.++--.+..+ .+....+..+.-.+.+++.++..+... +..+++.++.+...-.++..-+
T Consensus 516 ~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e--~~~~~~~~~~~rqrveE~ks~~ 593 (1293)
T KOG0996|consen 516 HETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKE--ERNLKSQLNKLRQRVEEAKSSL 593 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665544443 344444444444555566555555443 2245555555555555555555
Q ss_pred HHHHHHHHHhhhchhhh
Q 036820 285 EAVQKEYKELKLSSENE 301 (651)
Q Consensus 285 ~~l~key~~lk~ssE~~ 301 (651)
+.-...-..|++-...+
T Consensus 594 ~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 594 SSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HhhhhhhHHHHHHHHHH
Confidence 54444444444444333
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.62 E-value=11 Score=43.21 Aligned_cols=250 Identities=19% Similarity=0.216 Sum_probs=156.9
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhh
Q 036820 189 IEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELN 267 (651)
Q Consensus 189 ~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln 267 (651)
+...+.+..-..|=+.+..+..++.+|=+.|+.||.++.-|.-++..+..++..+----+++|.=.++|+.|-.|. .|-
T Consensus 316 ~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 316 NYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3344455556667788889999999999999999999999999999999999998888899999999999987776 232
Q ss_pred hhhhhhHhcccchHHHHHHHHHHHHHhhhchhh---------hhhhhhhhhh------H------------------hHH
Q 036820 268 ARASSLLVERDDSKQKLEAVQKEYKELKLSSEN---------ETASNAKRLR------E------------------KKE 314 (651)
Q Consensus 268 ~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~---------~aa~da~lL~------e------------------ke~ 314 (651)
.-|-+ -+-++..-++.+.|-+-++++.-.. .+.-|+.|-. . +-+
T Consensus 396 k~V~~---~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~ 472 (622)
T COG5185 396 KSVKS---RKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQ 472 (622)
T ss_pred HHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHH
Confidence 22221 2223444455555555554433221 1112222211 1 111
Q ss_pred HHHHHHHHHHHHHhHhhhc-hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHH-HhhHHHHHhhhhhhhHHHHHHHHHHh-
Q 036820 315 ELHQLKEKLELTLDEACEN-RATIAKFTQEKDDLRKMLDNELGNVKNLKYEL-QITQETLETTRNEASDLEKQLKQSKD- 391 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~-~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~l-q~Tqe~L~~sR~e~s~L~~~L~~~~~- 391 (651)
..-.-+++=+..|.+..++ ..+|++||++++. +..++.-+.++=.+. +..++-+.++|.|.-+|+.+|++++-
T Consensus 473 ~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~----~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~ 548 (622)
T COG5185 473 ERIKTEENKSITLEEDIKNLKHDINELTQILEK----LELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLL 548 (622)
T ss_pred HHHHHHhccceeHHHHhhhHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1112233334445555554 4578888888765 456666666655544 44566788999999999999998764
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhcchHHH-HhhhhhhhhhHHhHHHHHHHhHHHH
Q 036820 392 ---SCADLETEISRIRAEFAEVKHTLGNSLDEA-KRSGEVLAGELFAAKEVLKKASEEL 446 (651)
Q Consensus 392 ---~~~~L~~qiskl~~E~~e~ke~l~~~l~ea-k~~~~~Ls~El~s~ke~l~k~~eeL 446 (651)
+-.+++.-|....-++.+.+..+-++-.+- |+|.- .-++....|=.++-+=|+|
T Consensus 549 s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~-v~~~~~~fk~~IQssledl 606 (622)
T COG5185 549 SKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIH-VIDITSKFKINIQSSLEDL 606 (622)
T ss_pred ccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHhhHHHH
Confidence 345677777777777777777766654443 23332 2345555555554444443
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.51 E-value=18 Score=45.28 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=37.5
Q ss_pred HhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820 556 KSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616 (651)
Q Consensus 556 ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s 616 (651)
+-.+|.++...+|++-+.|-++| ..+-++-+++.--.+-|||--.+++=+++.-|+-
T Consensus 1693 ~L~~eA~~Ll~~a~~kl~~l~dL----e~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDL----ELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33455555566666666554443 4445666677777788888888888888877763
No 84
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.48 E-value=13 Score=43.48 Aligned_cols=119 Identities=21% Similarity=0.346 Sum_probs=74.1
Q ss_pred hHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhch
Q 036820 257 LNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENR 334 (651)
Q Consensus 257 L~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~ 334 (651)
+-+.|++- -.+..|+-++.+-..+...|-.++.+...|.-.- +.|.++..+ .|-+.++++...|-. |+
T Consensus 222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql-~~~N~~~~~--~~~~~i~~~~~~L~~------kd- 291 (629)
T KOG0963|consen 222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL-AKANSSKKL--AKIDDIDALGSVLNQ------KD- 291 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh--ccCCchHHHHHHHhH------HH-
Confidence 33444443 5566788888888899999999988888775432 223333333 144667777666654 33
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHH
Q 036820 335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQ 388 (651)
Q Consensus 335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~ 388 (651)
.+|+.|+.+++.+++-+..|.++++ ..|+.-+.-+...+.+.-.+.++|+.
T Consensus 292 ~~i~~L~~di~~~~~S~~~e~e~~~---~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 292 SEIAQLSNDIERLEASLVEEREKHK---AQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888887777766554 34444455555555555555555543
No 85
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.36 E-value=5.7 Score=42.44 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=45.9
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh
Q 036820 305 NAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN 357 (651)
Q Consensus 305 da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~ 357 (651)
+...+..-..+|.+++.++.........+|-.|..+..+++.+++.|+.|+..
T Consensus 252 ~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~ 304 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK 304 (444)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777889999999999988888999999999999999999999988754
No 86
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.32 E-value=3.9 Score=47.03 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=106.3
Q ss_pred hhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhh--hhhhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820 216 LDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQ--NELNARASSLLVERDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 216 l~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~q--t~Ln~~v~sL~~ek~~~~~k~~~l~key~~ 293 (651)
...++-|+++|.-+.+++...|..++.+-..=.-. .-++ ..++++ ++||.++...-.+...++.+++.+...-..
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~--~~~~-~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL--MGNN-ATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--ccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456666666666666666666665543211000 0010 011111 255555555555555555555555444332
Q ss_pred hhhchhhhhh-----hhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhh-hhhHHHHHh
Q 036820 294 LKLSSENETA-----SNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNV-KNLKYELQI 367 (651)
Q Consensus 294 lk~ssE~~aa-----~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~-k~L~~~lq~ 367 (651)
-+....--.. .+..++.+-..++-+++.++......-..++-.|.++..+++++++-+..|+..+ ..+..+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~ 349 (754)
T TIGR01005 270 GGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADA 349 (754)
T ss_pred CCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000000 0114556666677777777777777788899999999999999999999998875 445555555
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820 368 TQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 368 Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~ 416 (651)
.+......+..+.++..++.... ..+.+...|+-|..-.++.|..
T Consensus 350 a~~~~~~L~~~l~~~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 350 AQARESQLVSDVNQLKAASAQAG----EQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544443322 2355555666666555554443
No 87
>PF13514 AAA_27: AAA domain
Probab=94.30 E-value=17 Score=44.24 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=95.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH--------HhhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL--------LKFGEDKRTLEEERKQKLDRIEGLQDK 225 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL--------sqAEedkd~Ae~eLeeKl~~i~~Lq~k 225 (651)
.....+..++..+...+......+..+..-++.....-..+...+ ..+...++.+ ..+.+.+..+..++.+
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l-~~l~~~~~~~~~~~~r 751 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELL-EELREALAEIRELRRR 751 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666555555333222 2222233333 3688888899999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhh------hHHHhhhhHhhhhhh--------hhhhhhhhhHhcccchHHHHHHHHHHH
Q 036820 226 INLLSLELREKDDGVQKLSSSLQQ------KETELKNLNSVYKQN--------ELNARASSLLVERDDSKQKLEAVQKEY 291 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~SsLa~------KE~e~~nL~~~y~qt--------~Ln~~v~sL~~ek~~~~~k~~~l~key 291 (651)
|.-+..++..-+..+..|-..+.. -...+..|...+.+. .+..++..+-.+......++..+..++
T Consensus 752 i~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 752 IEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888777654 134566666666555 566667777777777888888888888
Q ss_pred HHhhhch
Q 036820 292 KELKLSS 298 (651)
Q Consensus 292 ~~lk~ss 298 (651)
..|-...
T Consensus 832 ~~L~~~a 838 (1111)
T PF13514_consen 832 AELLEQA 838 (1111)
T ss_pred HHHHHhc
Confidence 7775533
No 88
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.18 E-value=7.4 Score=39.60 Aligned_cols=214 Identities=18% Similarity=0.284 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh
Q 036820 313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS 392 (651)
Q Consensus 313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~ 392 (651)
...++.+..+|..-.+..+..+..|..+..++.++-.=+++=...+......-+..........+.+.+|......+...
T Consensus 23 ~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~ 102 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN 102 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333332222223333333333344444444555555555555555
Q ss_pred hhHHHHHHHHHHH------------HHHHHHHHHh----cchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHH
Q 036820 393 CADLETEISRIRA------------EFAEVKHTLG----NSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456 (651)
Q Consensus 393 ~~~L~~qiskl~~------------E~~e~ke~l~----~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~ 456 (651)
-+++..++..+-. .+.+++..|. |.+..-++.+ -.|+..+..+|.+.+..++.--.+....
T Consensus 103 i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~A---e~El~~A~~LL~~v~~~~~~~~~~~~~l 179 (264)
T PF06008_consen 103 IQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNA---EDELKEAEDLLSRVQKWFQKPQQENESL 179 (264)
T ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence 5555444433322 3333333322 1222222222 3577777788888777775444444433
Q ss_pred ----HHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhh
Q 036820 457 ----AENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRN 529 (651)
Q Consensus 457 ----~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~ 529 (651)
...-....-.|-|++.-+..+.+-..+=-.++.--..-|+.+.++...-++-+......|.+|...|++.|.-
T Consensus 180 ~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~l 256 (264)
T PF06008_consen 180 AEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDL 256 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444567888888888887777766666666667788889999999999999999999999999887753
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.01 E-value=11 Score=43.77 Aligned_cols=176 Identities=22% Similarity=0.337 Sum_probs=118.4
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHh
Q 036820 436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN----DLKEQKEIVSSLNKELQALEKQTSKDKEARKS 511 (651)
Q Consensus 436 ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~----eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~ 511 (651)
-+-+.|-+.-++..++-+......-+.....|++-|..++.... +..+.-.-+..+-.+.+.++..+....|..+.
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777888888888888888889999999999887544 33444456778888999999999999999999
Q ss_pred HHHhHHHHhhhHHHhhhhHHH-----HhHHHhhhhhccccchhHHHHHHHh---HHHHHhh---------hHHHhhchHH
Q 036820 512 LETDLEEATKSLDEMNRNALE-----LSKNLEKANSQISNLEDEKAVLYKS---LTEQKSI---------ANESRENMED 574 (651)
Q Consensus 512 Le~dLeeaT~SldEmn~~~~~-----LS~~Le~ans~issle~eKevL~ks---l~eqk~~---------t~EAqeN~eD 574 (651)
|..+++...+. +||++.. +-+...+-+.-|..+-.+-..|++- ++.+-.. -++|+.+ +-
T Consensus 473 L~~e~e~~~k~---~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkD-e~ 548 (594)
T PF05667_consen 473 LVKELEKLPKD---VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKD-EA 548 (594)
T ss_pred HHHHHHhCCCC---CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC-HH
Confidence 99999999988 8888752 3333333334444444444344332 2222222 2344433 45
Q ss_pred HHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820 575 AHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINS 616 (651)
Q Consensus 575 A~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~s 616 (651)
++...+-|-.=++.|+.=....| +-++..-||-.|=.||..
T Consensus 549 ~rkaYK~La~lh~~c~~Li~~v~-~tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 549 ARKAYKLLASLHENCSQLIETVE-ETGTISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 66777777777777777666664 456666677777777654
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=18 Score=42.90 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=128.4
Q ss_pred hhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHhcchHHHHhhhhhhhhhH
Q 036820 356 GNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV---KHTLGNSLDEAKRSGEVLAGEL 432 (651)
Q Consensus 356 ~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~---ke~l~~~l~eak~~~~~Ls~El 432 (651)
.+.+-|..+++++-.+.++.-....+|-.||.+.-+-|-.|-.+--+.+.+.+.. +..|...+-..+.....+-..+
T Consensus 447 ~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i 526 (698)
T KOG0978|consen 447 KNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKI 526 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888999999999999999999999999999999988877776666554 4455666777788888888888
Q ss_pred HhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhH
Q 036820 433 FAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSL 512 (651)
Q Consensus 433 ~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~L 512 (651)
....|.++..+......+.++..-+..-..+++..+|+=+.++-..-++-.=-+.+.-+-..+.++.--+..++.-|+-|
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988889999988888888888888888887776665555444455555555555555555666666666
Q ss_pred HHhHHHHhhhHHHh
Q 036820 513 ETDLEEATKSLDEM 526 (651)
Q Consensus 513 e~dLeeaT~SldEm 526 (651)
|.+++..-+=|..+
T Consensus 607 eEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 607 EEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666544444333
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.81 E-value=11 Score=40.49 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=43.6
Q ss_pred hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820 334 RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413 (651)
Q Consensus 334 ~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~ 413 (651)
+.-|+.|+.|+..-..=...==+.|-+|--.+--.|..++..-.|--+|...|..++.....|..++..|++-..|+-..
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665543333333334444555555555555555555555666666666666655555555555555555444
Q ss_pred Hh
Q 036820 414 LG 415 (651)
Q Consensus 414 l~ 415 (651)
|.
T Consensus 292 L~ 293 (306)
T PF04849_consen 292 LH 293 (306)
T ss_pred HH
Confidence 43
No 92
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.14 E-value=9.5 Score=40.57 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=75.4
Q ss_pred HhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhh
Q 036820 510 KSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSL 589 (651)
Q Consensus 510 k~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~ 589 (651)
+++...|++|...|++.+..--..-.+|...+.++..|+.+-+-..+--..-.......+..++-|..||..||.|+...
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 35667777777777777776666667777777777777776654443333333444556678999999999999999999
Q ss_pred hHhhhhhHHHHhhcccchhh
Q 036820 590 DKRSKKLEEELASAKGEILR 609 (651)
Q Consensus 590 e~r~kkLEeELAsAKGEiLr 609 (651)
......|++.+..--|.+|=
T Consensus 297 ~~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHH
Confidence 99999999999988887763
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.87 E-value=26 Score=41.83 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=90.5
Q ss_pred HhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHH--HHHHHhHHHHHHHHHHHHHHHHh
Q 036820 119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGL--GKELQNEKRFIEELRIEIDSLQT 196 (651)
Q Consensus 119 kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL--~keLqnek~tVEdlk~eIeql~s 196 (651)
+-|.++.+++++..+|-.|+...+..|--+.+ ++.+|--+..+++.-+..- ..+|..-++.|..+..+=+++--
T Consensus 392 ~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~k----ERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK 467 (961)
T KOG4673|consen 392 KRKSNESEVSSLREEYHQRVATLEKKVQALTK----ERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSK 467 (961)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999998888766653 4555555555555444322 14677777888888888888877
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 197 SLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 197 sLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
..-.-..+|..++.+.++-=..+.-+-++|.+|+.|. +.|-+.|.-||.-
T Consensus 468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~-------~~lk~il~~Kee~ 517 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEE-------NKLKSILRDKEET 517 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHH-------HHHHHHhhhHHHH
Confidence 7777788999999988887777777778888887765 3466777777653
No 94
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.59 E-value=13 Score=37.79 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhh
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEA 379 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~ 379 (651)
.+++.+-.+.|++..|+.=...++.--+....-+.+|++.-..+
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~ 229 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKK 229 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655555554455444444444433333
No 95
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.46 E-value=14 Score=37.71 Aligned_cols=152 Identities=23% Similarity=0.314 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 036820 108 ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEEL 187 (651)
Q Consensus 108 a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdl 187 (651)
.+..++..|..=..+-|.+|.-|-.+.+..-...+..+.+++ .+...+..-|+++......+-.++.+.+..++..
T Consensus 34 e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~----~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 34 ELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLL----KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH----hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455666777777777788887777777666444455555544 4566777888888888888888888777776655
Q ss_pred -------HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhh----HHhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820 188 -------RIEIDSLQTSLLKFGEDKRTLEEERKQKLDR----IEGL----QDKINLLSLELREKDDGVQKLSSSLQQKET 252 (651)
Q Consensus 188 -------k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~----i~~L----q~kinLLs~e~~~Ke~~i~~l~SsLa~KE~ 252 (651)
+..+.....+|...+.-.+.+..--++||+. |+-+ +.-+--|.-.|+--+-.+++|..+|..|..
T Consensus 110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777764 3322 333455777777788888899999999998
Q ss_pred HhhhhHhhhhh
Q 036820 253 ELKNLNSVYKQ 263 (651)
Q Consensus 253 e~~nL~~~y~q 263 (651)
|...|-.|++.
T Consensus 190 En~ELtkICDe 200 (207)
T PF05010_consen 190 ENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHH
Confidence 88888888763
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.34 E-value=26 Score=40.53 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
..-..+..+.-++.-++..+..+..+...++..+......+..++..|....-.--.+|.+++-|-.+|.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444555555555555555666666666666666666666666666555544555555555555444
No 97
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=28 Score=40.74 Aligned_cols=228 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh--------hhhhHHHHH
Q 036820 314 EELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR--------NEASDLEKQ 385 (651)
Q Consensus 314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR--------~e~s~L~~~ 385 (651)
.++..|.++|..+-.+..+.-.-=-.|-.|+.+++.-++.==.-..+.+++|..|++||..+| +....=+--
T Consensus 15 ~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesL 94 (772)
T KOG0999|consen 15 QEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESL 94 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHh----------HHHHHHHhHHHHHhhhHHHHH
Q 036820 386 LKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFA----------AKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 386 L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s----------~ke~l~k~~eeL~~~S~eL~~ 455 (651)
|+++-.--..+-.+|-++++|+...++.|++.-.+-++...+-+++..+ +|+-|+..+.-=.-+-.+-..
T Consensus 95 LqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE 174 (772)
T KOG0999|consen 95 LQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE 174 (772)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820 456 TAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK 535 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~ 535 (651)
.-|.+=+||| .|-..+---+--.-|+-| +.-|..|.+-|-.|+--+---+.--+..|+||..-|.-=-.--..|-+
T Consensus 175 LEEENIsLQK-qVs~LR~sQVEyEglkhe---ikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkk 250 (772)
T KOG0999|consen 175 LEEENISLQK-QVSNLRQSQVEYEGLKHE---IKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKK 250 (772)
T ss_pred HHHhcchHHH-HHHHHhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHhhhhhccc
Q 036820 536 NLEKANSQIS 545 (651)
Q Consensus 536 ~Le~ans~is 545 (651)
+|+-.-+..+
T Consensus 251 EL~q~~n~e~ 260 (772)
T KOG0999|consen 251 ELSQYRNAED 260 (772)
T ss_pred HHHHhcchhh
No 98
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.21 E-value=0.041 Score=62.92 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHH
Q 036820 106 KKATDATLEYMKARLKEKEAAIV 128 (651)
Q Consensus 106 kka~~~tiesm~~kL~e~Eaa~~ 128 (651)
...+.+-++.+...+-+.|++..
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~ 263 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRD 263 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665543
No 99
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.11 E-value=32 Score=41.01 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=103.9
Q ss_pred CchhhHHHHHhhhhhhhHh---HHHHHHHHHHHhhhhHHHHHhhHHHH-----HH-----HHHHHHHHHHHHHHHhHHHh
Q 036820 90 PRSGVLGALYALTQNEKKA---TDATLEYMKARLKEKEAAIVSLEKDF-----ES-----KLQNEQEQRTKQLKSAKEEQ 156 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~ekka---~~~tiesm~~kL~e~Eaa~~~lDedF-----Ek-----RLKevQeeVkkLLKk~kEee 156 (651)
|.|-+..-||-=+-+=|.- .++-+--=+.||-|+-..|...+++. +. +|.+.-.+..+|++. .
T Consensus 75 ~ms~LySKL~~EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~----n 150 (786)
T PF05483_consen 75 PMSRLYSKLYKEAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKE----N 150 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHh----h
Confidence 5666777777666554443 33444555677888888887776652 22 122222223333321 1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH-----------hhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL-----------KFGEDKRTLEEERKQKLDRIEGLQDK 225 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs-----------qAEedkd~Ae~eLeeKl~~i~~Lq~k 225 (651)
.+.=..-|-++.|-.-.-..++....--++|..-...+-++|. +|+++-..+.-+|+|.+.-|+.|+++
T Consensus 151 naTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leee 230 (786)
T PF05483_consen 151 NATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEE 230 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223333344433333333333334445444444444443 45555556667899999999999998
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820 226 INLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN 264 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt 264 (651)
. -.++++||+.|--|-..+..||.+++.|..-+..|
T Consensus 231 y---~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es 266 (786)
T PF05483_consen 231 Y---KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQES 266 (786)
T ss_pred H---HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 5 57999999999999999999999999999888777
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.67 E-value=15 Score=38.91 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=25.7
Q ss_pred hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
+..++.+|......+...|.++.++..++..++.-...+..+++.+.++.+++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 101
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.63 E-value=8.3 Score=42.73 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=64.2
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH
Q 036820 376 RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH 451 (651)
Q Consensus 376 R~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~ 451 (651)
...++++.+++---|.---+-++||.|+..||..-++-|.-+++-.+.--+.|-.|..++|++++--..++|..+-
T Consensus 219 ksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred ccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3346677777766666666788999999999999999999999999999999999999999999988877776553
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.44 E-value=38 Score=40.56 Aligned_cols=291 Identities=27% Similarity=0.335 Sum_probs=168.2
Q ss_pred HHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHH---HHHHHH
Q 036820 252 TELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLK---EKLELT 326 (651)
Q Consensus 252 ~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLe---ekl~~A 326 (651)
.++-.|..-|.|- .|--+|+.++-++|-++.++..|.++.. ++....+|.|||..|++|- |||+.-
T Consensus 398 s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela---------~~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 398 SEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA---------AALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445566678887 8999999999999999999998888754 4445567899999999985 344421
Q ss_pred H------------------hHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHh-hHHHHHhhhhhhhHHHHHHH
Q 036820 327 L------------------DEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQI-TQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 327 l------------------~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~-Tqe~L~~sR~e~s~L~~~L~ 387 (651)
. .-.-|+...|-.|..|.+-++..|++- .+..- -+|+..+--.++-.-.+.+-
T Consensus 469 ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K--------ee~Ek~~~E~I~k~~ae~~rq~~~~~ 540 (961)
T KOG4673|consen 469 QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDK--------EETEKLLQETIEKHQAELTRQKDYYS 540 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 112344445555555555555555442 11111 13455555555555666666
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHh--cch--HHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh
Q 036820 388 QSKDSCADLETEISRIRAEFAEVKHTLG--NSL--DEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL 463 (651)
Q Consensus 388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~--~~l--~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L 463 (651)
.++....+|+.+.--+++-|.+++--|+ +.+ |+|..--..|+--+--++.-|+++.--+ + -.-|-+
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~a-------a---rrEd~~ 610 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQA-------A---RREDMF 610 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHH
Confidence 6777777778888888888888877552 333 3666666677776667777776654322 1 112223
Q ss_pred hH---HHHHHHHHhHhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHH--------
Q 036820 464 RK---ELVNIYKKAEATANDLKEQKE-IVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNAL-------- 531 (651)
Q Consensus 464 ~k---EL~d~YKK~E~t~~eL~~ekk-iv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~-------- 531 (651)
.- +|---|.-+|.-.++|..+-- +-.-|=|.+++|..-...-.-|---+|.-|.+-.---.-.-|..+
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekq 690 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQ 690 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHH
Confidence 33 344456666777777776632 223466667776655554444433333333221100000001111
Q ss_pred -HHhHHH--hhhhhccccchhHHHHHHHhHHHHHhhhHHHh
Q 036820 532 -ELSKNL--EKANSQISNLEDEKAVLYKSLTEQKSIANESR 569 (651)
Q Consensus 532 -~LS~~L--e~ans~issle~eKevL~ksl~eqk~~t~EAq 569 (651)
.|+... -+..+..|=|+.|---|+++|.+.+|...+-+
T Consensus 691 ElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~ 731 (961)
T KOG4673|consen 691 ELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENR 731 (961)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111111 12233445578888899999998888766543
No 103
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.26 E-value=18 Score=36.56 Aligned_cols=177 Identities=26% Similarity=0.314 Sum_probs=113.8
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHH---HHH
Q 036820 111 ATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI---EEL 187 (651)
Q Consensus 111 ~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tV---Edl 187 (651)
..|++|+.+-.+++..|..|++.|...+..++.+...++-.+...-..|=++|..-...+..+.++|+..+.+. +.-
T Consensus 4 ~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~q 83 (206)
T PF14988_consen 4 EFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQ 83 (206)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46899999999999999999999999999999999999966777777888888888888888888777766554 445
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhH--HhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH--hhhhHhhhhh
Q 036820 188 RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI--EGLQDKINLLSLELREKDDGVQKLSSSLQQKETE--LKNLNSVYKQ 263 (651)
Q Consensus 188 k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i--~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e--~~nL~~~y~q 263 (651)
..+|..++..+..+ +.+-.+++..+ ..|++|.-| -.++.+ -.|..+. .-+.+|.. .+-|-..- -
T Consensus 84 e~eI~~Le~e~~~~-------~~e~~~~l~~~~~qfl~EK~~L-Eke~~e--~~i~~l~-e~a~~el~~k~~ale~~A-~ 151 (206)
T PF14988_consen 84 EREIQTLEEELEKM-------RAEHAEKLQEAESQFLQEKARL-EKEASE--LKILQLG-ERAHKELKKKAQALELAA-K 151 (206)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHH--hhHHHhH-HHhhHHHHHHHHHHHHHH-H
Confidence 55555565555544 44444444333 346777654 111111 1111111 00111100 00000000 0
Q ss_pred hhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchh
Q 036820 264 NELNARASSLLVERDDSKQKLEAVQKEYKELKLSSE 299 (651)
Q Consensus 264 t~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE 299 (651)
-.+..-..+++.++-...+.|.-+.++|..|.....
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~ 187 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKS 187 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 034455677888888888999999999988876543
No 104
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=42 Score=40.75 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820 130 LEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209 (651)
Q Consensus 130 lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae 209 (651)
+|=.|-+.-+..+.-+.+++....+ +-.+=..+..+++++....+.-++.+-...-+++.++..........+.+.
T Consensus 616 lD~~f~kL~kele~~i~k~ls~~~e----ee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~ 691 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLLSSKTE----EEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELE 691 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555522111 111223345566666666666666666666666666666666666666666
Q ss_pred HHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 210 EERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 210 ~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
.+++.+...+.-|.+-+++|..++.
T Consensus 692 ~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 692 EEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666677777777777777776665
No 105
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.15 E-value=46 Score=40.98 Aligned_cols=247 Identities=19% Similarity=0.273 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHhHHHhHHHHHHHHHHHHhHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820 132 KDFESKLQNEQEQRTKQL-------KSAKEEQQLLMNKLNSANTTIS--GLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202 (651)
Q Consensus 132 edFEkRLKevQeeVkkLL-------Kk~kEeeQSLlDQLnSLnsTLt--SL~keLqnek~tVEdlk~eIeql~ssLsqAE 202 (651)
++|-.++-..|....+.+ +.+++....+..-|.++.++|. .+.+++..+ ..+.+-.+++.+..++...+
T Consensus 268 qEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEE--RaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 268 QEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEE--RAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877777 2245555566666777777654 566666544 46778888999999999999
Q ss_pred hhHHHHHHHHHHhhhhHHhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhccc
Q 036820 203 EDKRTLEEERKQKLDRIEGL----QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERD 278 (651)
Q Consensus 203 edkd~Ae~eLeeKl~~i~~L----q~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~ 278 (651)
.|.+.++.+.++|=....+. =..|.--+..+||-=.++|.||++ --.+.+.++.-.. -.|+.++-|..-+.
T Consensus 346 tdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~---ek~d~qK~~kelE--~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 346 TDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSAS---EKQDHQKLQKELE--KKNSELEELRRQKE 420 (1243)
T ss_pred HHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 99999999999983332111 012333344455555566666654 2223333322111 22333333333333
Q ss_pred chHHHHHHHHHHHHHhhhchhhhhhhhhh--------hhhHhHHHHHHHHHHHHH--HHhHhh-----hchhHHHhhhhh
Q 036820 279 DSKQKLEAVQKEYKELKLSSENETASNAK--------RLREKKEELHQLKEKLEL--TLDEAC-----ENRATIAKFTQE 343 (651)
Q Consensus 279 ~~~~k~~~l~key~~lk~ssE~~aa~da~--------lL~eke~~l~qLeekl~~--Al~e~~-----k~~~~Ia~L~~e 343 (651)
...++++...-...|||--- -||.-|+ .=.+-++.+.+|+|-... |+.+.. -|+...-||..|
T Consensus 421 ~Lsr~~d~aEs~iadlkEQV--DAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreE 498 (1243)
T KOG0971|consen 421 RLSRELDQAESTIADLKEQV--DAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREE 498 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333110 0111111 112234444444443321 222221 133344444444
Q ss_pred HHHH--------------HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820 344 KDDL--------------RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 344 ~~~~--------------r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~ 387 (651)
+|-+ -.-+-+=-.++++.++.++..++.|.+-+++.+-.++++.
T Consensus 499 ld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 499 LDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence 4433 2222223345666777777777777777777766666554
No 106
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.04 E-value=13 Score=34.55 Aligned_cols=127 Identities=24% Similarity=0.331 Sum_probs=82.8
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 036820 103 QNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKR 182 (651)
Q Consensus 103 q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~ 182 (651)
..++..+++.+..+.....+-++.+..+..+-+.--..+++...+--+-..- -...+..|..++..+..+...+...+.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~-Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK-HAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888877776655555555553322211 223367777777777777777777777
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhh
Q 036820 183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLEL 233 (651)
Q Consensus 183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~ 233 (651)
.++.++......+.+ |+.-+..++.++.+--..|+.|..-=+||-..|
T Consensus 81 ~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 81 EAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666655554 666666666666666666666655555554433
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.87 E-value=24 Score=37.33 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=55.5
Q ss_pred hchhHHHhhhhhHHHHHHHHHHhhhhhhhh-----------------HHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 332 ENRATIAKFTQEKDDLRKMLDNELGNVKNL-----------------KYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 332 k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L-----------------~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
.|..++.+...-=++.|..+++.+.+||.. .....+.++.+....++...|...+..+...-.
T Consensus 101 ~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~ 180 (325)
T PF08317_consen 101 SNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLP 180 (325)
T ss_pred cCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777666678888888888888753 334455666666666777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036820 395 DLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l 414 (651)
+|...-..|..|+...++..
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555543
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.33 E-value=36 Score=38.34 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820 136 SKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200 (651)
Q Consensus 136 kRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq 200 (651)
++|.+.+.++..+-+. .++..+.|..+|.+++..+..+...+..........+..|..+..++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 7888888888877744 3566667777777777777777666666666665555555555555543
No 109
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.29 E-value=0.22 Score=57.16 Aligned_cols=55 Identities=18% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK 390 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~ 390 (651)
-|-.+.++..++...++.+-..+..|..++...++.+.....+...|..+.+..+
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555544444444444444333
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.14 E-value=22 Score=35.66 Aligned_cols=160 Identities=23% Similarity=0.334 Sum_probs=91.2
Q ss_pred HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG 430 (651)
Q Consensus 351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~ 430 (651)
..|=+.-+++||.++..-.......+..++++..+-. .|..-+.+++.|..+.+.-|.. .+.-+ .
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~-------~L~epL~~a~~e~~eL~k~L~~-y~kdK-------~ 86 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENK-------RLSEPLKKAEEEVEELRKQLKN-YEKDK-------Q 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH-HHHHH-------H
Confidence 3445666777777766655555555555555554444 4444444444444444444332 11112 1
Q ss_pred hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 036820 431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKE---------QKEIVSSLNKELQALEKQ 501 (651)
Q Consensus 431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~---------ekkiv~tLn~eL~al~~Q 501 (651)
-|..+|..++..+.+|.....+-.........+..|-=+.|.+++.+..|..+ ||+ +..|...|+.-+.|
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkK-l~~l~~~lE~keaq 165 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKK-LQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35667777777777777777777777777778888888889999998888755 343 34566666666666
Q ss_pred hhhhHHHhHhHHHhHHHHhhhHHHh
Q 036820 502 TSKDKEARKSLETDLEEATKSLDEM 526 (651)
Q Consensus 502 ~~~d~EaRk~Le~dLeeaT~SldEm 526 (651)
+.---.+=..=-++++.++..++++
T Consensus 166 L~evl~~~nldp~~~~~v~~~l~~~ 190 (201)
T PF13851_consen 166 LNEVLAAANLDPAALSQVSKKLEDV 190 (201)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5532222222223344444444443
No 111
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.05 E-value=60 Score=40.53 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh
Q 036820 318 QLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR 376 (651)
Q Consensus 318 qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR 376 (651)
+...+|+..|...... +..+.++....+..+|+=-.+..++++.++.-+.++-=+|
T Consensus 265 ~~N~~Ls~~L~~~t~~---~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~ 320 (1109)
T PRK10929 265 KINRELSQALNQQAQR---MDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGE 320 (1109)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 3455666666665553 4455667777777777777777777777776665554443
No 112
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.95 E-value=26 Score=36.13 Aligned_cols=163 Identities=21% Similarity=0.308 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820 134 FESKLQNEQEQRTKQLKSAK---EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE 210 (651)
Q Consensus 134 FEkRLKevQeeVkkLLKk~k---EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~ 210 (651)
.+.||...+.+....-+..- -.-..|-++.......+..+...|.-++-+.+++..+-+.---.+.-.+++...++.
T Consensus 23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee 102 (205)
T KOG1003|consen 23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE 102 (205)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566666665555554321 123566778888888899999999999999999998888888888888888888888
Q ss_pred HHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhh-----hhhhHhcccchHHHHH
Q 036820 211 ERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNAR-----ASSLLVERDDSKQKLE 285 (651)
Q Consensus 211 eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~-----v~sL~~ek~~~~~k~~ 285 (651)
..+--...+.-|.+-+..+.+.++.-+..-+.++-.+-.-+.+++-|..-..+++.+.. |+.|--+.|+.+.++.
T Consensus 103 raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 103 RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 88777777777888888888888777777777777777777777777777777765554 9999999999999999
Q ss_pred HHHHHHHHhhh
Q 036820 286 AVQKEYKELKL 296 (651)
Q Consensus 286 ~l~key~~lk~ 296 (651)
...-.|.+++.
T Consensus 183 ~~k~ky~~~~~ 193 (205)
T KOG1003|consen 183 EAKEKYEEAKK 193 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.56 E-value=48 Score=38.69 Aligned_cols=278 Identities=21% Similarity=0.231 Sum_probs=146.6
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhh
Q 036820 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSL 231 (651)
Q Consensus 152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~ 231 (651)
+...-..+...+..++.+..++...++ .++.....++-++........|...++.=+..-.+.-..+..+++-|..
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~ 301 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS 301 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333444444444444444444444 2333333444444444445555556666666666666777888888999
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhh-hhhhhhHhcccchHHHHHHH-------HHHHHHhhhchhhhhh
Q 036820 232 ELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELN-ARASSLLVERDDSKQKLEAV-------QKEYKELKLSSENETA 303 (651)
Q Consensus 232 e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln-~~v~sL~~ek~~~~~k~~~l-------~key~~lk~ssE~~aa 303 (651)
|+..||..++.+.+ ...++++- +=.| .++ +.|...+.|++...+.|+.| +|+--++++--+..
T Consensus 302 Eie~kEeE~e~lq~----~~d~Lk~~--Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~-- 372 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQK----ENDELKKQ--IELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF-- 372 (581)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH--HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence 99999988876543 33344332 1122 111 12444444554444444444 44444333211111
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH--H-HHHhhhhhhhhHHHHHhhHHHHHhhhhhhh
Q 036820 304 SNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK--M-LDNELGNVKNLKYELQITQETLETTRNEAS 380 (651)
Q Consensus 304 ~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~--m-Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s 380 (651)
.+ =+--+=-.+|+|=-+|..-...-++| -++.-.+. | +|-=-.-..-|+..+-.+++.+..--++..
T Consensus 373 f~--~le~~~~~~~~l~~~i~l~~~~~~~n--------~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~ 442 (581)
T KOG0995|consen 373 FK--ELEKKFIDLNSLIRRIKLGIAENSKN--------LERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELE 442 (581)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHhcc--------CCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01111122333333333331112222 11111110 0 010011123455666677777777777777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHH
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHE 452 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~e 452 (651)
.|.+-..+.+..-..+...+..+..|+..+-..+..+..+++.....-..|+-++-+.|...+..+.+.-.+
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~ 514 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKE 514 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777888888888888877777777666665554433
No 114
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.31 E-value=62 Score=39.63 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhH---HHHHhhh
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKAS---EELQNVS 450 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~---eeL~~~S 450 (651)
-|+....++|..|..++.++.-++.++++.+-..+.+.++.++.-..++ .+-..+..+.|++ ++++.+-
T Consensus 348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela-ql~a~r~q~eka~~~~ee~e~~~ 419 (980)
T KOG0980|consen 348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA-QLLASRTQLEKAQVLVEEAENKA 419 (980)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455667889999999999999999999999999999999886555443 3445677888888 6665543
No 115
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.20 E-value=63 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=24.4
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLK 121 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~ 121 (651)
|.++++.++-......+.....+..++.+|.
T Consensus 178 g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 178 GTEIYGQISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888888887777777778888888887774
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.96 E-value=17 Score=38.82 Aligned_cols=166 Identities=20% Similarity=0.268 Sum_probs=104.0
Q ss_pred chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820 333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH 412 (651)
Q Consensus 333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke 412 (651)
|..++-+-...=++.|.++++.+.+||.-.... ....-=+-|. +. +.-.++
T Consensus 97 nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~--ak~~WYeWR~---------------------kl------legLk~ 147 (312)
T smart00787 97 NPPLFKEYFSASPDVKLLMDKQFQLVKTFARLE--AKKMWYEWRM---------------------KL------LEGLKE 147 (312)
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---------------------HH------HHHHHH
Confidence 444555555556788888888888887643321 1111111121 11 234455
Q ss_pred HHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh----hHHHHHHHHHhHhhHHHHHHHHHHH
Q 036820 413 TLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL----RKELVNIYKKAEATANDLKEQKEIV 488 (651)
Q Consensus 413 ~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L----~kEL~d~YKK~E~t~~eL~~ekkiv 488 (651)
+|..+++.-+.--+.|...+..+.+++-...+..+...+++.......+.+ +.||-.+..++-..-.++..-++-+
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666665555555555444444443 4577777777777777887778888
Q ss_pred HHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhh
Q 036820 489 SSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMN 527 (651)
Q Consensus 489 ~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn 527 (651)
.-++.+|+.+...+..-.+-...++..+.+|.+-+++-.
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888887777777777777777777777655443
No 117
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.82 E-value=28 Score=34.97 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=57.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhh----hhhhhHHhHHHHHHHhHH
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGE----VLAGELFAAKEVLKKASE 444 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~----~Ls~El~s~ke~l~k~~e 444 (651)
...|...+..+..+.++|...+--+..|+..+.++..|..+....+...|.+..+.+. .|-.-|..+.+.|.+...
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777788888888888888888899999999998888888888887664 355555555555555555
Q ss_pred HHH
Q 036820 445 ELQ 447 (651)
Q Consensus 445 eL~ 447 (651)
+|.
T Consensus 165 qL~ 167 (201)
T PF13851_consen 165 QLN 167 (201)
T ss_pred HHH
Confidence 544
No 118
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.71 E-value=79 Score=40.08 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred HhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHH-------HHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh---hhhHH
Q 036820 151 SAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI-------EELRIEIDSLQTSLLKFGEDKRTLEEERKQK---LDRIE 220 (651)
Q Consensus 151 k~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tV-------Edlk~eIeql~ssLsqAEedkd~Ae~eLeeK---l~~i~ 220 (651)
++++.+..|...+.++..++.-+.+-..++.+.. +.++.-..+...++..++++|..+..=|..+ .++|+
T Consensus 1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~ 1495 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIE 1495 (1758)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3456666666666666666555555444444443 4444444444444444444555444444433 45666
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhh-hhhhhhhHhcccchHHHHHHHHHHHH
Q 036820 221 GLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNEL-NARASSLLVERDDSKQKLEAVQKEYK 292 (651)
Q Consensus 221 ~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~L-n~~v~sL~~ek~~~~~k~~~l~key~ 292 (651)
.+-++| |-.+|.---+.|+.|.-.+.+-=.-+.|.--|..+|-= -.++.-|..+-..++++-+.+++.-.
T Consensus 1496 ~vA~~v--L~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae 1566 (1758)
T KOG0994|consen 1496 EVAEEV--LALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAE 1566 (1758)
T ss_pred HHHHHH--HhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555554 22333333344444444444444445566667777721 13455555555555555544444433
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.62 E-value=59 Score=38.55 Aligned_cols=217 Identities=23% Similarity=0.334 Sum_probs=111.2
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHhcchHHHHhhhhhh
Q 036820 359 KNLKYELQITQETLETTRNEASDLE-------KQLKQSKDSCADLETEISRIRAEFAEVK---HTLGNSLDEAKRSGEVL 428 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~-------~~L~~~~~~~~~L~~qiskl~~E~~e~k---e~l~~~l~eak~~~~~L 428 (651)
++||-+||.-...=.+.|+.++-|. .+|.+.+.-|..|+..+..|..--..-| +.|.++|.+...--..+
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~l 507 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASL 507 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655555555555554433 3466666666666666666555444444 34445554443333333
Q ss_pred hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 036820 429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEA 508 (651)
Q Consensus 429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~Ea 508 (651)
=..|...|---++..+ ....-++...-.|. |- .|--++| ...|+.|+..|...+..-.|.
T Consensus 508 EkQL~eErk~r~~ee~---~aar~~~~~~~~r~----e~-----------~e~~r~r--~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 508 EKQLQEERKARKEEEE---KAARALAQAQATRQ----EC-----------AESCRQR--RRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHhHHHH---hhhhccccchhccc----hh-----------HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222111 11111110000000 11 1111222 256667777776666666666
Q ss_pred hHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhH-------HHhhchHHHHHHHHH
Q 036820 509 RKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIAN-------ESRENMEDAHNLVMR 581 (651)
Q Consensus 509 Rk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~-------EAqeN~eDA~nli~~ 581 (651)
-..||.++.+.-+=-.|.+ ++.|..-+-.+.+.|.-..|-++|.....+-. +|+..+|.|+..|+.
T Consensus 568 ~~~~e~~~~~lr~~~~e~~-------~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~ 640 (697)
T PF09726_consen 568 IRELESELQELRKYEKESE-------KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRK 640 (697)
T ss_pred HHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667776643332112322 23445555667788888888888887776543 678888888887765
Q ss_pred hhhhhhhhhHhhhhhHHHHhhccc
Q 036820 582 LGQERKSLDKRSKKLEEELASAKG 605 (651)
Q Consensus 582 Lg~ERE~~e~r~kkLEeELAsAKG 605 (651)
+|+|-.|.+. |+.+=||--=+
T Consensus 641 --~d~ei~~lk~-ki~~~~av~p~ 661 (697)
T PF09726_consen 641 --KDKEIEELKA-KIAQLLAVMPS 661 (697)
T ss_pred --HHHHHHHHHH-HHHHHHhcCCc
Confidence 5666555554 34555554433
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.13 E-value=29 Score=37.24 Aligned_cols=192 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred hhhhhheeeccccchhccchhhhcCC---------------------CCchhhHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 036820 63 RRKTILLVGISVLPLLNLRARALDGL---------------------APRSGVLGALYALTQNEKKATDATLEYMKARLK 121 (651)
Q Consensus 63 ~rr~iL~vgisVLP~L~lr~~A~~~~---------------------~p~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~ 121 (651)
.--.++-.|..=+|+|-+-..+-.-+ .|. +|==.|..+...|...+..+--+++
T Consensus 50 sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~a~~d~r~lm~~Qf~lvK~--- 124 (312)
T smart00787 50 SLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFSASPDVKLLMDKQFQLVKT--- 124 (312)
T ss_pred CHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHcCCHHHHHHHHHHHHHHHH---
Confidence 34455666777889988754322111 143 5555555555555555544443332
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 036820 122 EKEAAIVSLEKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL 198 (651)
Q Consensus 122 e~Eaa~~~lDedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL 198 (651)
=|=..+...=|+=|.+-.+--...|... .+.+...|+.+++-++.-+-.+.........-+..+........+-
T Consensus 125 --~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~- 201 (312)
T smart00787 125 --FARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC- 201 (312)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC-
Confidence 2233344455666666655555555522 3556666777766666666666666665555555554444443220
Q ss_pred HhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820 199 LKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN 264 (651)
Q Consensus 199 sqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt 264 (651)
--+..+.++.+|.+-...|.....++.-+..++..+...|...+...++-..+++.+..+.++.
T Consensus 202 --d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 202 --DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0124445556666666666666666666666666666666666666666666666666666554
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.02 E-value=40 Score=35.87 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=27.2
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKE 314 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~ 314 (651)
.+|.+.++|..-..+.+.+++.|.++-++++.--=.=++.-++...++..
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~ 215 (265)
T COG3883 166 ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAA 215 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56666666666666666666666666655554433333333344344433
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.90 E-value=1.5 Score=42.88 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhh
Q 036820 160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDG 239 (651)
Q Consensus 160 lDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~ 239 (651)
.....++...+..+..+|......-.+ +..+|..+...+...+.++.++-..|..|+..+.-|...+++.++.
T Consensus 66 ~~~~~~le~~~~~l~~ELael~r~~~e-------l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 138 (194)
T PF08614_consen 66 SAQISSLEQKLAKLQEELAELYRSKGE-------LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE 138 (194)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc-------ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444333 3344444444444555566666556666555555555555555555
Q ss_pred hhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820 240 VQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 240 i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk 295 (651)
|++.+..+. .||..+.+|..+.+-.++++..+++|+.+|=
T Consensus 139 l~ek~k~~e----------------~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 139 LKEKNKANE----------------ILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443332 2344445555555666777777777777663
No 123
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.79 E-value=47 Score=36.38 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIE 190 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~e 190 (651)
.+.+++..++..+.....++...+.....+..+
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555555555555443
No 124
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.70 E-value=72 Score=38.43 Aligned_cols=301 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQ 249 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~ 249 (651)
+...++.+..+..++++....++........-...... ...
T Consensus 446 ~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~---------------------------------------~~~ 486 (769)
T PF05911_consen 446 LVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEY---------------------------------------ESM 486 (769)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchh---------------------------------------hhh
Q ss_pred hHHHhhhhHhhhhhh-hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHh
Q 036820 250 KETELKNLNSVYKQN-ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD 328 (651)
Q Consensus 250 KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~ 328 (651)
.-..+++.++.+..+ +||.-|..+ .||...=+.-+-.=-.||..+.+.-. .=+.++.+|+
T Consensus 487 ~~sL~e~~~s~~~~s~eL~~avskI------------------sEfv~~LekeVh~C~DLLsgkadLE~-fieE~s~tLd 547 (769)
T PF05911_consen 487 EASLVEESKSMIEISQELNVAVSKI------------------SEFVLVLEKEVHVCQDLLSGKADLER-FIEEFSLTLD 547 (769)
T ss_pred hhhHHHHHHHHHhhcccHHHHHHhH------------------HHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHH
Q ss_pred HhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 036820 329 EACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA 408 (651)
Q Consensus 329 e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~ 408 (651)
.+--+..-+.|...+.+.++..++..-..-..+.... ..-......+.++|+.+..--.+|+..+.+.++.+.
T Consensus 548 wIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~d-------ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE 620 (769)
T PF05911_consen 548 WILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSED-------EADTSEKKELEEELEKLESEKEELEMELASCQDQLE 620 (769)
T ss_pred HHHHccchHHHHHHHHHHHHHhhhhcccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHH
Q 036820 409 EVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIV 488 (651)
Q Consensus 409 e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv 488 (651)
..+-.| .+++..-..|-.+|.++++-=.....+|+++--...+.--..-.++.|+-.+.-|+.+--.||..||.--
T Consensus 621 ~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~ 696 (769)
T PF05911_consen 621 SLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALS 696 (769)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHhhhhHHHhHhH-----------HHhHHHHhhhHHHhhhhHHHHhHHHhh
Q 036820 489 SSLNKELQALEKQTSKDKEARKSL-----------ETDLEEATKSLDEMNRNALELSKNLEK 539 (651)
Q Consensus 489 ~tLn~eL~al~~Q~~~d~EaRk~L-----------e~dLeeaT~SldEmn~~~~~LS~~Le~ 539 (651)
.-+--.-..|+.|+...+--.... +.+|--|..=|-|-=+--+.|++.|..
T Consensus 697 ~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLks 758 (769)
T PF05911_consen 697 EELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKS 758 (769)
T ss_pred hhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 125
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.96 E-value=60 Score=36.77 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820 319 LKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK 390 (651)
Q Consensus 319 Leekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~ 390 (651)
+++.|..--.-.+|-..-+.++...++.++. |+....+....++..+..+...+.++.++..+|...|
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~----eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKE----ELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333444444556666655555443 4444555566666666666666666666666666663
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.86 E-value=22 Score=35.48 Aligned_cols=87 Identities=26% Similarity=0.339 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 169 TISGLGKELQNEKRFIEELRIEIDSLQT-SLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSL 247 (651)
Q Consensus 169 TLtSL~keLqnek~tVEdlk~eIeql~s-sLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsL 247 (651)
+|......++..+...+.+..+|+.+-. ........+..+..++.++-+.+..|.++|..+..++.++...+.++...|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444322 000033345566667777777777888888888888888888888888888
Q ss_pred hhhHHHhh
Q 036820 248 QQKETELK 255 (651)
Q Consensus 248 a~KE~e~~ 255 (651)
..+...+.
T Consensus 101 ~~~~~~l~ 108 (302)
T PF10186_consen 101 EQRRSRLS 108 (302)
T ss_pred HHHHHHHH
Confidence 77777666
No 127
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.07 E-value=20 Score=34.22 Aligned_cols=87 Identities=13% Similarity=0.336 Sum_probs=73.8
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 036820 106 KKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIE 185 (651)
Q Consensus 106 kka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVE 185 (651)
|+.+...+.++...|..-=+++..-...+-.||..+-..++++. +..+.+-+.+..++..+..++..+.++...|.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~----ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQK----EISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999999999999988888776 35566777888999999999999999999998
Q ss_pred HHHHHHHHHHh
Q 036820 186 ELRIEIDSLQT 196 (651)
Q Consensus 186 dlk~eIeql~s 196 (651)
.+..+|..++.
T Consensus 114 ~Le~ki~~ie~ 124 (126)
T PF07889_consen 114 GLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHhc
Confidence 88888877654
No 128
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=85.90 E-value=23 Score=35.65 Aligned_cols=172 Identities=17% Similarity=0.252 Sum_probs=77.4
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh----HHHhHHHHHHHHHH
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSA----KEEQQLLMNKLNSA 166 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~----kEeeQSLlDQLnSL 166 (651)
++|+|+|- ...+.....-.+++.+- ..|..|..- -+.|...+....+|-... ++....+.+..+.+
T Consensus 4 ~~~lLagC--~~~~~~e~~~~~le~a~----~~Ek~~~~~----~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a 73 (204)
T PF10368_consen 4 SALLLAGC--TGKKPEEQLYDQLEKAV----KQEKPFKEQ----QKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEA 73 (204)
T ss_dssp ----------HHHHHHHHHHHHHHHHH----HTTHHHHHH----HHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCChHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 46778887 44555555555555432 223333221 122223333333333221 23334444445555
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS 246 (651)
Q Consensus 167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss 246 (651)
-..+..-++.|..++..++....+...+...+.+.++..- -+.+..|...
T Consensus 74 ~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~------------------------------k~qa~~l~~~ 123 (204)
T PF10368_consen 74 LKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEKL------------------------------KKQAKELNEA 123 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH------------------------------HHHHHHHHHH
Confidence 5555555555555555555555555555554443333211 1124455555
Q ss_pred hhhhHHHhhhhHhhhhhh-------------------hhhhh---hhhhHhcccchHHHHHHHHHHHHHhhhchhhhh
Q 036820 247 LQQKETELKNLNSVYKQN-------------------ELNAR---ASSLLVERDDSKQKLEAVQKEYKELKLSSENET 302 (651)
Q Consensus 247 La~KE~e~~nL~~~y~qt-------------------~Ln~~---v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~a 302 (651)
+-.+-..|..|...|... +|..+ |+..|..-....++.+...++|++.|...-..|
T Consensus 124 ~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y~~a 201 (204)
T PF10368_consen 124 MKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFYKKA 201 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666554 44444 455555566667788889999999887665544
No 129
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.97 E-value=34 Score=32.79 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=13.5
Q ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHHHH
Q 036820 444 EELQNVSHELEATAENRDSLRKELVNIY 471 (651)
Q Consensus 444 eeL~~~S~eL~~~~e~rd~L~kEL~d~Y 471 (651)
+.++..-..+.+.-+....+.+|+.|..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555
No 130
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.22 E-value=31 Score=33.10 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=4.8
Q ss_pred HHhhhhhHHHHHH
Q 036820 337 IAKFTQEKDDLRK 349 (651)
Q Consensus 337 Ia~L~~e~~~~r~ 349 (651)
++.+.+|++++..
T Consensus 90 l~~l~~el~~l~~ 102 (191)
T PF04156_consen 90 LQQLQEELDQLQE 102 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 131
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.06 E-value=1.2e+02 Score=37.77 Aligned_cols=251 Identities=22% Similarity=0.299 Sum_probs=154.1
Q ss_pred HHHHHHHHhHhhhchhHHHhhhhhHHHHHHH------HHHhhhhh-----------hhhHHHHHhhHHHHHhhhhhhhHH
Q 036820 320 KEKLELTLDEACENRATIAKFTQEKDDLRKM------LDNELGNV-----------KNLKYELQITQETLETTRNEASDL 382 (651)
Q Consensus 320 eekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m------Ld~E~~~~-----------k~L~~~lq~Tqe~L~~sR~e~s~L 382 (651)
+-++..|+.-+-++-++.-||.+-.-..|.- |+..-... ++=+-++ ...+..+|.+.++|
T Consensus 607 ~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~---~k~~~~~~~~~~~l 683 (1200)
T KOG0964|consen 607 EPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLEL---LKNVNESRSELKEL 683 (1200)
T ss_pred chhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHH---HhhhHHHHHHHHHH
Confidence 5688999999999999999998887766642 22221111 1222222 34566778888888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhh
Q 036820 383 EKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS 462 (651)
Q Consensus 383 ~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~ 462 (651)
.+.|+++++..-+...+|..+..... .+.+.+...++.-+.|..|+.+++.--...++.++.-..+|..+--.++-
T Consensus 684 ~~~L~~~r~~i~~~~~~i~q~~~~~q----k~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~ 759 (1200)
T KOG0964|consen 684 QESLDEVRNEIEDIDQKIDQLNNNMQ----KVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHK 759 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888888877777777777766543 34566677777778888888888888888888888887777766555554
Q ss_pred hhHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHhHh-HHHh--------HHHHhhhH
Q 036820 463 LRKELVNIYKKAEAT----ANDLKEQKEIVSSLNKELQALEKQTSKD------KEARKS-LETD--------LEEATKSL 523 (651)
Q Consensus 463 L~kEL~d~YKK~E~t----~~eL~~ekkiv~tLn~eL~al~~Q~~~d------~EaRk~-Le~d--------LeeaT~Sl 523 (651)
+.--. -|.+.|-. .+.=.+|+.-+..||.|+.+|-.+.-.- -+.||+ |++. .+++-.-+
T Consensus 760 ~~~~~--~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei 837 (1200)
T KOG0964|consen 760 LESQS--NYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEI 837 (1200)
T ss_pred HHHHH--HhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 43211 12222222 2223578888999999999988877633 344432 2222 23344444
Q ss_pred HHhhhhHHHH-----hHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHH
Q 036820 524 DEMNRNALEL-----SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLV 579 (651)
Q Consensus 524 dEmn~~~~~L-----S~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli 579 (651)
+..|++..-. -.+|+..+.++-+.--|-.-|..+.+.-+....+-+.++|-|.||=
T Consensus 838 ~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le 898 (1200)
T KOG0964|consen 838 GDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE 898 (1200)
T ss_pred hhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544221 1234444444444444444555555566666666677777776653
No 132
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=84.01 E-value=0.79 Score=49.35 Aligned_cols=123 Identities=17% Similarity=0.307 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
=.++.++|..+...+.++..-+......+.++...+..+...+.+....+..+...+..--..|+.|-.-|+-|+..+.+
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 34444455555554444444444444444444444444444444444444444444444334444444444444444444
Q ss_pred hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHH
Q 036820 236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAV 287 (651)
Q Consensus 236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l 287 (651)
-+..|-.|.+..+.-+.++-|| ++-|+++=..-.+.+.++++|
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNL---------ksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNL---------KSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp --------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhh---------hhhhhhhcchHhhHHHHHHHH
Confidence 4444444555555445554444 444444444444444444444
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.93 E-value=37 Score=31.63 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH-------HHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820 315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK-------MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~-------mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~ 387 (651)
+++.|+..+..+......-...|..+..+++.... ..+.||..+...-. .|...|.++..+..++.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~-------~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK-------ELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333322 23445544444333 34444555555555555
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh
Q 036820 388 QSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA 429 (651)
Q Consensus 388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls 429 (651)
+.+.........+......|.+-+..|...|.+++.-.+-|.
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556666677788888888888877777665544
No 134
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.52 E-value=94 Score=36.03 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=149.0
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH---HHhHHHhHHHHHHHHHHHHhHHHHH
Q 036820 98 LYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL---KSAKEEQQLLMNKLNSANTTISGLG 174 (651)
Q Consensus 98 Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL---Kk~kEeeQSLlDQLnSLnsTLtSL~ 174 (651)
+|..--++..++++|-+-+..+.++-+. |+.-.+..+.|-+..+.+-.++- ...++.-+...+.|..+..-+..-.
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kE 343 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKE 343 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3444446778888888888888887653 55566666666677777766665 1123334444444455555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHh
Q 036820 175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETEL 254 (651)
Q Consensus 175 keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~ 254 (651)
.+++..+.-+..+..++..-+.+..+.+.-.. -+.+|.-.|+.|.+ ++.-|...+++-+-.+|..--||-.+=-+|
T Consensus 344 eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~-Ere~L~reL~~i~~---~~~~L~k~V~~~~leaq~~~~slek~~~~~ 419 (622)
T COG5185 344 EEIKALQSNIDELHKQLRKQGISTEQFELMNQ-EREKLTRELDKINI---QSDKLTKSVKSRKLEAQGIFKSLEKTLRQY 419 (622)
T ss_pred HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHhcc---hHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566665555555554443321 23344445555544 333345555555555555555554444444
Q ss_pred hhhHhhhhhh---------------------------------------------------------------hhhhhhh
Q 036820 255 KNLNSVYKQN---------------------------------------------------------------ELNARAS 271 (651)
Q Consensus 255 ~nL~~~y~qt---------------------------------------------------------------~Ln~~v~ 271 (651)
+.|.. .-| ++|.-++
T Consensus 420 ~sl~~--~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~ 497 (622)
T COG5185 420 DSLIQ--NITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDIN 497 (622)
T ss_pred HHHHH--HhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHH
Confidence 44321 111 3333344
Q ss_pred hhHhcccchHHHHHHHHHHHHHhhhch-hhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHh--------hhchhHHHhhhh
Q 036820 272 SLLVERDDSKQKLEAVQKEYKELKLSS-ENETASNAKRLREKKEELHQLKEKLELTLDEA--------CENRATIAKFTQ 342 (651)
Q Consensus 272 sL~~ek~~~~~k~~~l~key~~lk~ss-E~~aa~da~lL~eke~~l~qLeekl~~Al~e~--------~k~~~~Ia~L~~ 342 (651)
.|......++-+|...-+.|..+|-.+ +.+.|.|++. ---+.+|++|.=--.+-+.++ -+=..+-.++|.
T Consensus 498 El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~-eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~ 576 (622)
T COG5185 498 ELTQILEKLELELSEANSKFELSKEENERELVAQRIEI-EKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR 576 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHH
Confidence 555555556666667777777777544 3456666664 334555555532111111111 111223445666
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 343 EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 343 e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
++..+-+|+-.=+...-+.+--+|+ .|+++|++. -+.+++.++
T Consensus 577 ~r~~i~k~V~~v~~~~~~fk~~IQs---sledl~~~l---~k~~~~l~~ 619 (622)
T COG5185 577 KRYKIHKQVIHVIDITSKFKINIQS---SLEDLENEL---GKVIEELRN 619 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHh---hHHHHHHHH---HHHHHHHHh
Confidence 6666666666666666666665554 355555543 334444443
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.32 E-value=62 Score=33.80 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE 210 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~ 210 (651)
.+.+-.+++....++..+..++...+..+..+..++..++..+..++...+....
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~ 186 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRK 186 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555544444444333
No 136
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.96 E-value=79 Score=34.73 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=11.8
Q ss_pred hhhhhHHhHHHHHHHhHHHHHhhhHHHH
Q 036820 427 VLAGELFAAKEVLKKASEELQNVSHELE 454 (651)
Q Consensus 427 ~Ls~El~s~ke~l~k~~eeL~~~S~eL~ 454 (651)
.+..++..+...+...+.+++.....+.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.95 E-value=1.4e+02 Score=37.75 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=68.7
Q ss_pred hhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHH
Q 036820 272 SLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKML 351 (651)
Q Consensus 272 sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mL 351 (651)
.+..+-+++...+..+.-.|..|..+-.. +..-...+..++..+..+-.+...=..-|+.+..+++.+...+
T Consensus 848 ~~~~aL~~y~~~l~~l~~~~~~L~~A~~~--------~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 848 AVGLALKRFGDHLHTLEVAVRELRHAATR--------AAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777777777777777644332 2334445555556666666665555666777777777777777
Q ss_pred HHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHH
Q 036820 352 DNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEI 400 (651)
Q Consensus 352 d~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qi 400 (651)
... +..+...|+.....|...+.+.-.+..++...+..-..+..++
T Consensus 920 ~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 920 GAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644 3345555555555555555555555555544444444444433
No 138
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.55 E-value=77 Score=34.31 Aligned_cols=197 Identities=21% Similarity=0.267 Sum_probs=84.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-H--hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820 126 AIVSLEKDFESKLQNEQEQRTKQLK-S--AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202 (651)
Q Consensus 126 a~~~lDedFEkRLKevQeeVkkLLK-k--~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE 202 (651)
+|..+...|+.+..+....+..+-. + +...=..+-..=+.+|..|..+....+..+.--..++.++.+++..-.
T Consensus 3 ~~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~--- 79 (294)
T COG1340 3 AMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD--- 79 (294)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3444555555555543333333331 0 111222233333334444444444444444444444444444444433
Q ss_pred hhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-hhhhhhhhhHhcccchH
Q 036820 203 EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN-ELNARASSLLVERDDSK 281 (651)
Q Consensus 203 edkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-~Ln~~v~sL~~ek~~~~ 281 (651)
.+-..+.+.+..+..+-.++|..+. .--++-.++.+++.|-.++ || .|+-.. -...-
T Consensus 80 ----ein~kl~eL~~~~~~l~e~~~~~~~-----------~~~~~~~ler~i~~Le~~~-~T~~L~~e~------E~~lv 137 (294)
T COG1340 80 ----EINAKLQELRKEYRELKEKRNEFNL-----------GGRSIKSLEREIERLEKKQ-QTSVLTPEE------ERELV 137 (294)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhhc-----------cCCCHHHHHHHHHHHHHHH-HhcCCChHH------HHHHH
Confidence 3444444455555555566553321 0112334455555554443 33 222211 12445
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhh---hhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820 282 QKLEAVQKEYKELKLSSENETASN---AKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348 (651)
Q Consensus 282 ~k~~~l~key~~lk~ssE~~aa~d---a~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r 348 (651)
++|..|.|+|.+-+..-+-.+... ++.. ..-+...-+-+++..--+++.+-+..+..+-++.|.+|
T Consensus 138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~-~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~R 206 (294)
T COG1340 138 QKIKELRKELEDAKKALEENEKLKELKAEID-ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELR 206 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777665444333322 2221 11122233333444444444444444544444444444
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.20 E-value=5 Score=39.34 Aligned_cols=97 Identities=33% Similarity=0.418 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036820 136 SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK 215 (651)
Q Consensus 136 kRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK 215 (651)
.++...+++...+.+. ...+..+|..++..+..+...+..-...+.++...+..+...+. ....+|++|
T Consensus 74 ~~~~~l~~ELael~r~----~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~-------~l~~~l~ek 142 (194)
T PF08614_consen 74 QKLAKLQEELAELYRS----KGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK-------DLEEELKEK 142 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred cccccccccccccccc----cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3444555556666552 33477788888888888888888888888888777777777766 778888888
Q ss_pred hhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 216 LDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 216 l~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
=..+++|+|=+--|..+++--|+.++.|
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888888887777766655
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.90 E-value=77 Score=33.84 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhh----hhhhhhhhhhhhhhhhhhhhhhh
Q 036820 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL----QDKINLLSLELREKDDGVQKLSS 245 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~L----q~kinLLs~e~~~Ke~~i~~l~S 245 (651)
++.+..++..+...|+-=+..+++....=. .+...+..+.++++.+..| +...+-|..+...+...+-.+-.
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~----~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKK----SLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666555555554444443322 3334444455555444443 44445555555555555555555
Q ss_pred hhhhhHHHhhhhH
Q 036820 246 SLQQKETELKNLN 258 (651)
Q Consensus 246 sLa~KE~e~~nL~ 258 (651)
..+.-..|...|-
T Consensus 205 ~~a~~~~e~a~l~ 217 (265)
T COG3883 205 KEASALGEKAALE 217 (265)
T ss_pred HHHHhHHHHHHHH
Confidence 5555444444444
No 141
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.85 E-value=13 Score=37.67 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=17.5
Q ss_pred HhHhhhchhHHHhhhhhHHHHHHHHHH
Q 036820 327 LDEACENRATIAKFTQEKDDLRKMLDN 353 (651)
Q Consensus 327 l~e~~k~~~~Ia~L~~e~~~~r~mLd~ 353 (651)
|++...-+..+..|.+++..++..|++
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777766655
No 142
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.26 E-value=25 Score=42.28 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=107.6
Q ss_pred HHHhHHHHHHHHHhHHHHH-----HHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhh
Q 036820 166 ANTTISGLGKELQNEKRFI-----EELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGV 240 (651)
Q Consensus 166 LnsTLtSL~keLqnek~tV-----Edlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i 240 (651)
++++|..+.+.|+.-..+- .+++-++--+++- ...++.+|+|-+..++.||.|-.-|..-+..--+.-
T Consensus 399 LrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSl-------N~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 399 LRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSL-------NMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHH-------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555555554432222 4455555555554 448999999999999999999998888887776667
Q ss_pred hhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHH
Q 036820 241 QKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ 318 (651)
Q Consensus 241 ~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~q 318 (651)
+.+..-+-+|+.++.+....|+-- .+.-.|...++.-..+.=||.+-.||-..|..+ |+.+|.++..
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it-----------lrQrDaEi~R 540 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT-----------LRQRDAEIER 540 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH-----------HHHHHHHHHH
Confidence 778888889999998888888754 555557777777788888888888888777654 4667777776
Q ss_pred HHHH-------HHHHHhHhhhchhH
Q 036820 319 LKEK-------LELTLDEACENRAT 336 (651)
Q Consensus 319 Leek-------l~~Al~e~~k~~~~ 336 (651)
|.|- ...-|+|-+.|.+.
T Consensus 541 L~eLtR~LQ~Sma~lL~dls~D~ar 565 (861)
T PF15254_consen 541 LRELTRTLQNSMAKLLSDLSVDSAR 565 (861)
T ss_pred HHHHHHHHHHHHHHHhhhccccccc
Confidence 6652 23345555555544
No 143
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=80.87 E-value=1.3 Score=47.72 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=0.7
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 167 NTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSS 246 (651)
Q Consensus 167 nsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss 246 (651)
...|+.++++|...+..++.+...+..+-+.+.+...+++.+...+.+--..|..|...|.-|...|.+-+..|-.++..
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ 106 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSST 106 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 34566666666666666666666666666666666666666666666655555555555555555555555555555555
Q ss_pred hhhhHHHhhhhHh
Q 036820 247 LQQKETELKNLNS 259 (651)
Q Consensus 247 La~KE~e~~nL~~ 259 (651)
++.-+..+-+|++
T Consensus 107 ls~h~ssIS~Lqs 119 (326)
T PF04582_consen 107 LSDHSSSISDLQS 119 (326)
T ss_dssp -----------HH
T ss_pred hhhhhhhHHHHHH
Confidence 5554444444433
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.87 E-value=64 Score=32.26 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=24.1
Q ss_pred hhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 036820 429 AGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKK 473 (651)
Q Consensus 429 s~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK 473 (651)
...+.....-+...+..+..+...+ ...|..+-.+|..+|-=
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~l~~~l---~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 118 QEQLEELQNELEERKQRLSQLQSQL---ARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCc
Confidence 3344444445555555555544443 33677788888888853
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.83 E-value=15 Score=37.31 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 168 TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 168 sTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
....++.+.+..-+..+.+++.+..++...+..+....+.++.++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555554444444444433
No 146
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.70 E-value=1.2e+02 Score=35.41 Aligned_cols=131 Identities=17% Similarity=0.329 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhh-----------------hccccchhHHH
Q 036820 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKAN-----------------SQISNLEDEKA 552 (651)
Q Consensus 490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~an-----------------s~issle~eKe 552 (651)
-++.+++.|=.++-.+=+||+..+.-+..-+.-|+-|+++--.|-.+.+..+ .++.+|+.--.
T Consensus 285 ~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~ 364 (570)
T COG4477 285 LIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLD 364 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777778888887776666666666655555555555544433 24445555555
Q ss_pred HHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820 553 VLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620 (651)
Q Consensus 553 vL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~ 620 (651)
.+-.-+..|..+--+.|.|+++-.+-+.-..++-+++--...-|+.+=..|+-...|++++|...+--
T Consensus 365 ~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 365 EILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777888999999999999999999999999999999999999999999999998776543
No 147
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.53 E-value=1 Score=46.56 Aligned_cols=106 Identities=28% Similarity=0.346 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHh---hhhHHHHhH------------HHhhhhhccccchhHHHHH
Q 036820 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEM---NRNALELSK------------NLEKANSQISNLEDEKAVL 554 (651)
Q Consensus 490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEm---n~~~~~LS~------------~Le~ans~issle~eKevL 554 (651)
.|.+++..++.++..-++.=..||.||..+..+.+.. |.++-..+. .+--+.|-++.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~-------- 74 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGG-------- 74 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCC--------
Confidence 4556666666666666666666777777766554443 222222221 11111112222
Q ss_pred HHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820 555 YKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 555 ~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
.+...|+--+-..|.-|-.|...||+|+...+.+|--||++|.+.++-+
T Consensus 75 ------------------~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 75 ------------------GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred ------------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999988876
No 148
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.79 E-value=69 Score=32.02 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=104.3
Q ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHH------------HHH-HHHHHHHHhcchHHHHhhhhhhhhh
Q 036820 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRI------------RAE-FAEVKHTLGNSLDEAKRSGEVLAGE 431 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl------------~~E-~~e~ke~l~~~l~eak~~~~~Ls~E 431 (651)
|+.-++.-..-..-|++|.....+.+.-|.+|+.+++.- ..+ ...+.+ .-..|++..+-++-|+.=
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~-~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEE-ALIRLEEEQQRSEELAQV 82 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHH-HHHHHHHHHHhHHHHHHH
Confidence 455566666677777888888888888888888877421 111 122333 445688888888888888
Q ss_pred HHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHH---HHHHhHhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 036820 432 LFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVN---IYKKAEATAND-LKEQKEIVSSLNKELQALEKQTSKDKE 507 (651)
Q Consensus 432 l~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d---~YKK~E~t~~e-L~~ekkiv~tLn~eL~al~~Q~~~d~E 507 (651)
-+-+++.|..++..-+..+++|.-++..-..++.||-. .|+.-+..-+. +-.|-.=+..|=+++.++-.|. .|
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f---~e 159 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQF---AE 159 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHH---HH
Confidence 88888888888888888888888888888888777763 45555444433 3344444667778888888776 46
Q ss_pred HhHhHHHhHHHH
Q 036820 508 ARKSLETDLEEA 519 (651)
Q Consensus 508 aRk~Le~dLeea 519 (651)
-|-.-+.||...
T Consensus 160 lr~~TerdL~~~ 171 (182)
T PF15035_consen 160 LRTATERDLSDM 171 (182)
T ss_pred HHHHHHhhHHHH
Confidence 677777777654
No 149
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.71 E-value=1.8e+02 Score=36.04 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=34.2
Q ss_pred hhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhh
Q 036820 266 LNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACE 332 (651)
Q Consensus 266 Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k 332 (651)
+..+..-|+.+..+.-+|++.++|+-.- ...+- | +.+.+..+|.++|+..-+....
T Consensus 429 lkek~t~l~~~h~~lL~K~~di~kQle~-----~~~s~-~-----~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKYDDIQKQLES-----AEQSI-D-----DVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhH-H-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456778888888888888887542 22221 1 5666667777766655544443
No 150
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.29 E-value=69 Score=31.13 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=68.0
Q ss_pred hhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 036820 102 TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEK 181 (651)
Q Consensus 102 ~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek 181 (651)
++.++.-++-.|.+|+..|..-+.---.+-.+-|..-.. +.. .++.=..+..-++.+.--|..+..+-.+..
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e----ie~----L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE----IET----LEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666544443333333333321111 111 122223333344445555555555555555
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 182 RFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 182 ~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
.....-..+|..+........+.+...+.+ |....+.+.--|..|..+++.
T Consensus 87 k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSSLENLLQEKEQE---KVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 566666677777777777777777776666 666777777777777766653
No 151
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.18 E-value=1.1e+02 Score=33.36 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=35.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHH
Q 036820 308 RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQ 366 (651)
Q Consensus 308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq 366 (651)
.|..|-++.-...+....-++..-.-+..+..+..|-+.+..+|...-.+...|..+|+
T Consensus 221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~ 279 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQ 279 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666666666666666666666666666666665555555544433
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.05 E-value=61 Score=30.40 Aligned_cols=92 Identities=26% Similarity=0.378 Sum_probs=49.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhh----hhhhhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL----QDKINL 228 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~L----q~kinL 228 (651)
.+....|.+.+..+...+..+...+...+.-++++..++..+......+...+..+...++.-=+.+.-+ |.+-+-
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666666555555555555555444444333 333334
Q ss_pred hhhhhhhhhhhhhhhh
Q 036820 229 LSLELREKDDGVQKLS 244 (651)
Q Consensus 229 Ls~e~~~Ke~~i~~l~ 244 (651)
...|++-||..|..|-
T Consensus 131 ~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 131 YEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555554444443
No 153
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=77.38 E-value=1.1e+02 Score=33.13 Aligned_cols=180 Identities=21% Similarity=0.260 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHh----H---H---HhHHHHHHHHHHHHhHHHHHHHHHhHH--HHHHH----HHHHH
Q 036820 131 EKDFESKLQNEQEQRTKQL---KSA----K---E---EQQLLMNKLNSANTTISGLGKELQNEK--RFIEE----LRIEI 191 (651)
Q Consensus 131 DedFEkRLKevQeeVkkLL---Kk~----k---E---eeQSLlDQLnSLnsTLtSL~keLqnek--~tVEd----lk~eI 191 (651)
++.|+.||...+.+|..|. ... + + ....+.+++..+...|..+ .+...- ..+.. -+...
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l--~l~~~lg~~~~~~~~~~~~~~~ 166 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL--KLEELLGEETAQDLSDPQKALS 166 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh--hcccccchhhhcccccchhhHH
Confidence 5789999999999999997 111 0 1 1234678888888888877 111110 11111 11222
Q ss_pred HHHHhHHHhhhhhHH------------------HHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 192 DSLQTSLLKFGEDKR------------------TLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 192 eql~ssLsqAEedkd------------------~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
.++-..+........ -..... -.+..+-.|..||+.|-.-|--.....-.|++...
T Consensus 167 ~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~-~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~----- 240 (388)
T PF04912_consen 167 KKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKS-QQLARAADLEKRLARLESALGIDSDKMSSLDSDTS----- 240 (388)
T ss_pred HHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchh-hHHHHHHHHHHHHHHHHHHhCCCccccccccccCC-----
Confidence 233333322210000 000011 12455666677777776655543333333333222
Q ss_pred hhhhHhhhhhhhhhhhhhhhHhcc-cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 036820 254 LKNLNSVYKQNELNARASSLLVER-DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLEL 325 (651)
Q Consensus 254 ~~nL~~~y~qt~Ln~~v~sL~~ek-~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~ 325 (651)
...| +-.-..|..+|+.|-..+ +....++..|.++|..+. ++|.+... ..+.+..+++|=+.|..
T Consensus 241 ~~~l--~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~---~~~~~~~~--~~~~e~KI~eLy~~l~~ 306 (388)
T PF04912_consen 241 SSPL--LPALNELERQLSLLDPAKLDSIERRLKSLLSELEELA---EKRKEAKE--DAEQESKIDELYEILPR 306 (388)
T ss_pred cchH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---hccccccc--cccchhHHHHHHHHHHH
Confidence 1111 111236777788875544 677788888888887764 44444321 24566777777666654
No 154
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.30 E-value=1.5e+02 Score=34.53 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--------------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh
Q 036820 231 LELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--------------ELNARASSLLVERDDSKQKLEAVQKEYKELKL 296 (651)
Q Consensus 231 ~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ 296 (651)
+++.+-+..+......+...+..|+.+...-.+. .++..++.|.....+.+.++.++...|.+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~--- 313 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLA--- 313 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCC---
Confidence 4444444444444444555555555554443322 12234555544444555555555555532
Q ss_pred chhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820 297 SSENETASNAKRLREKKEELHQLKEKLE 324 (651)
Q Consensus 297 ssE~~aa~da~lL~eke~~l~qLeekl~ 324 (651)
+.--+..-..++..|+.++.
T Consensus 314 --------~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 314 --------NHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred --------CCHHHHHHHHHHHHHHHHHH
Confidence 22223444555666665554
No 155
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.18 E-value=1.2e+02 Score=33.35 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhhhhHHHhh
Q 036820 237 DDGVQKLSSSLQQKETELK 255 (651)
Q Consensus 237 e~~i~~l~SsLa~KE~e~~ 255 (651)
+..+..+.+.+++.+.++.
T Consensus 242 ~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444333
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=76.80 E-value=2e+02 Score=35.77 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHh-hhhhHHHHHHHHH
Q 036820 315 ELHQLKEKLELTLDEACENRATIAK-FTQEKDDLRKMLD 352 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~~~~Ia~-L~~e~~~~r~mLd 352 (651)
-|..||-+|..|-.|++|-...--| +-...+++..|||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 3567888888888888776554333 2223344444444
No 157
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.78 E-value=2.1e+02 Score=35.95 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=116.1
Q ss_pred HhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHH---HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHH
Q 036820 99 YALTQNEKKATDATLEYMKARLKEKEAAIVSLEKD---FESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGK 175 (651)
Q Consensus 99 y~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDed---FEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~k 175 (651)
|-.+-.=.+-+-.+|+-|+++++.-.+.+.-.+.+ ++++++..+.++++.. ++.-.+|-++++++++-++....
T Consensus 239 Y~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em---~~~~~~L~~~~~~~~~~~tr~~t 315 (1174)
T KOG0933|consen 239 YLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEM---GGEVKALEDKLDSLQNEITREET 315 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHHHHHHHHH
Confidence 33333344566778899999988877766655543 3344444444444333 34448999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
-+.....++++....++++..++..-+...+.=+..+..=.+....+++..+-+|.-+.+.+..++.|+.-+|.-+.+
T Consensus 316 ~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~ 393 (1174)
T KOG0933|consen 316 SLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDE 393 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 999999999999999999999999777766666666666666777799999999999999999999999888877663
No 158
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=76.37 E-value=1.1e+02 Score=34.72 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=98.9
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHH---------HHHHhhhhHHHHHHHHHHHHH
Q 036820 337 IAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQL---------KQSKDSCADLETEISRIRAEF 407 (651)
Q Consensus 337 Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L---------~~~~~~~~~L~~qiskl~~E~ 407 (651)
|..|..++++.+..|+..-..+..+++.++.+.-.. +|.-++.=...- +-........-.+|..|..|+
T Consensus 87 i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrrdL 164 (426)
T smart00806 87 IDTLQNELDEVKQALESQREAIQRLKERQQNSAANI--ARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQREL 164 (426)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCc--ccccCCCCcccccccccccccCCCcccchhHHHHHHHHHHHH
Confidence 667778888888888888888888888887776221 221111100000 000111112234555555555
Q ss_pred HHHHHHHhcchHHHHhhhhhhhhhHHhHH------------HHHHHhHHHHHhhhHHHHHHHHhhhhhhHH---------
Q 036820 408 AEVKHTLGNSLDEAKRSGEVLAGELFAAK------------EVLKKASEELQNVSHELEATAENRDSLRKE--------- 466 (651)
Q Consensus 408 ~e~ke~l~~~l~eak~~~~~Ls~El~s~k------------e~l~k~~eeL~~~S~eL~~~~e~rd~L~kE--------- 466 (651)
+-+++++.....+.+..-..+-..+..+| -.+.+++.+|..-|..|++-+.--+++=..
T Consensus 165 avlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~Rg 244 (426)
T smart00806 165 AVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRG 244 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555544444444444444444 457788889888888887765443332222
Q ss_pred -------HHHHHHHhHhhHHHHH-------HHHHHH-HHHHHHHHHHH---HHhhhhHHHhHhHHHhHHHHhhhHHHhhh
Q 036820 467 -------LVNIYKKAEATANDLK-------EQKEIV-SSLNKELQALE---KQTSKDKEARKSLETDLEEATKSLDEMNR 528 (651)
Q Consensus 467 -------L~d~YKK~E~t~~eL~-------~ekkiv-~tLn~eL~al~---~Q~~~d~EaRk~Le~dLeeaT~SldEmn~ 528 (651)
|--|.|-+..++.+|+ .||-+- .+..+||+... .++...-+-=-.|+.||+.|+.-++=+..
T Consensus 245 VRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq 324 (426)
T smart00806 245 VRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQ 324 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333333 222221 12345665542 22333444455677777777766665554
Q ss_pred hH
Q 036820 529 NA 530 (651)
Q Consensus 529 ~~ 530 (651)
-+
T Consensus 325 ~~ 326 (426)
T smart00806 325 CC 326 (426)
T ss_pred HH
Confidence 43
No 159
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.21 E-value=1.5e+02 Score=33.96 Aligned_cols=124 Identities=24% Similarity=0.350 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHh--HhhhchhHHHhhhhhHHHHHHHHHHhhhhh----h
Q 036820 286 AVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLD--EACENRATIAKFTQEKDDLRKMLDNELGNV----K 359 (651)
Q Consensus 286 ~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~--e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~----k 359 (651)
.++++.+.|--++|.-+--|+-| .+++.+-+-+.-|++++- +.---++.+-.|.+=+--.|+-+-+++.+- .
T Consensus 360 ~vq~qma~lv~a~e~i~~e~~rl--~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e 437 (542)
T KOG0993|consen 360 EVQKQMARLVVASETIADEDSRL--RQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQE 437 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566666777777666666554 344444444555555555 333334445555555555555555665553 4
Q ss_pred hhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 360 NLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 360 ~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
.|+-++++.++.|++-|---..|+.+|+--..-|..+++-++.|..|..-++
T Consensus 438 ~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 438 DLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 6888999999999998888888999999999999999999999998888776
No 160
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.33 E-value=92 Score=36.10 Aligned_cols=82 Identities=27% Similarity=0.335 Sum_probs=58.2
Q ss_pred HHHHhHhhHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccc
Q 036820 470 IYKKAEATANDLKEQKEIVS----SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQIS 545 (651)
Q Consensus 470 ~YKK~E~t~~eL~~ekkiv~----tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~is 545 (651)
+|.-++.-..+|..++...- ..-.|-++|.+++-.....|+++ ..+|..++.+|.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l---------------------~eeL~~a~~~i~ 472 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL---------------------EEELKEANQNIS 472 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 77778888899998888765 35556666666655544444443 345667777899
Q ss_pred cchhHHHHHHHhHHHHHhhhHHHhhch
Q 036820 546 NLEDEKAVLYKSLTEQKSIANESRENM 572 (651)
Q Consensus 546 sle~eKevL~ksl~eqk~~t~EAqeN~ 572 (651)
.|+||.++-...-.+|-+.-.|==-+|
T Consensus 473 ~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999888887766543333
No 161
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.30 E-value=1.1e+02 Score=36.26 Aligned_cols=130 Identities=21% Similarity=0.316 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~ 456 (651)
+++.++..+|..++..+..+..+....+.+-......+. ...........|-....+.++- +....+++...
T Consensus 182 ~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~-------i~~l~~~l~~l 253 (670)
T KOG0239|consen 182 SDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-NYADLRRNIKPLEGLESTIKKK-------IQALQQELEEL 253 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhhHHHhhhhhhhhhhHHHHH-------HHHHHHHHHHH
Confidence 344455555555555555555555543333222222222 2334444444444444444444 44444444455
Q ss_pred HHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHH
Q 036820 457 AENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEE 518 (651)
Q Consensus 457 ~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLee 518 (651)
-.....|....+..|..++......... ..-|+..-..+..+. .+.+.||.|..++-+
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 254 KAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5555555555555565555555554444 233333334444555 667778877776654
No 162
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=75.18 E-value=4.6 Score=43.68 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH-----------HHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEI-----------DSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDK 225 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eI-----------eql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~k 225 (651)
+....++.+++.++..+..++.+++....+....| ..+.+++..+++-+..++..+.+=-..+..++.+
T Consensus 94 ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 94 EKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp ------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444455555555555555553332222222 2334555555555555555555544555556666
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 036820 226 INLLSLELREKDDGVQKLS 244 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~ 244 (651)
|..|..-+.|-|.+++..|
T Consensus 174 i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 174 IKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp HHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHhhccCCc
Confidence 6666666666666666555
No 163
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=74.81 E-value=1.1e+02 Score=31.73 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=104.2
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh--
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSC-------ADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA-- 429 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~-------~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls-- 429 (651)
..|..++..+|+-|........+.+..-+++.+.+ ++++-.+..+.+.+.++++.-...--..+-|+..|+
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~ii 93 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVII 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888877777777777766 556666777777777777665544433344444433
Q ss_pred -hhHHhHHHH-------HHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh-HhhHHHHHH--------HHHHHHHHH
Q 036820 430 -GELFAAKEV-------LKKASEELQNVSHELEATAENRDSLRKELVNIYKKA-EATANDLKE--------QKEIVSSLN 492 (651)
Q Consensus 430 -~El~s~ke~-------l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~-E~t~~eL~~--------ekkiv~tLn 492 (651)
++|-.+-+- ....-+++.++-+.|.+..-..+-+... .|.|+.. -.+++-|++ | +-|+.|.
T Consensus 94 E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~-~d~~e~~ik~ltdKLkEaE~rAE~aE-RsVakLe 171 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQK-EEKYEEELKELTDKLKEAETRAEFAE-RRVAKLE 171 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHc
Confidence 344433332 2344577777777777776555444322 2444332 222222322 3 5678888
Q ss_pred HHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHH
Q 036820 493 KELQALEKQTSKDKEARKSLETDLEEATKSLDE 525 (651)
Q Consensus 493 ~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldE 525 (651)
++..-|+.-.--.++--+.+..+||++.-+|..
T Consensus 172 ke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 172 KERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888888877777777888888888776653
No 164
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.69 E-value=87 Score=30.47 Aligned_cols=108 Identities=23% Similarity=0.331 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHh
Q 036820 478 ANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKS 557 (651)
Q Consensus 478 ~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ks 557 (651)
.++|++=+.=.++|-.-+.+|+..+.+--+.+-.+..|.+-+-+-+..+..-.-.+..+|...+.-..++..||+.|.+.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444455555566677777777
Q ss_pred HHHHHhhhHHHhhchHHHHHHHHHhhhh
Q 036820 558 LTEQKSIANESRENMEDAHNLVMRLGQE 585 (651)
Q Consensus 558 l~eqk~~t~EAqeN~eDA~nli~~Lg~E 585 (651)
|.+-+....+-.-...|..|+|..+..|
T Consensus 89 lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 89 LQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7766666666666667777777766555
No 165
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.57 E-value=14 Score=31.39 Aligned_cols=58 Identities=24% Similarity=0.459 Sum_probs=46.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 347 LRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 347 ~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
+-..|+.|+-+--.+..+|.. .+..--..+..|.++..-|.+|+.+|..|..+..+++
T Consensus 2 lQsaL~~EirakQ~~~eEL~k-------vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTK-------VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455688888887666666544 4555567889999999999999999999999998876
No 166
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.52 E-value=75 Score=31.71 Aligned_cols=111 Identities=23% Similarity=0.352 Sum_probs=84.7
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHH
Q 036820 98 LYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKEL 177 (651)
Q Consensus 98 Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keL 177 (651)
.++..-++..+.+..+..+..++.+-++.+..+...++..-.. +.--+++..++..|..+...+..+..+|
T Consensus 56 YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~---------r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 56 YWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG---------REESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred EEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777788888888888887777777776666633110 2223679999999999999999999999
Q ss_pred HhHH----HHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhh
Q 036820 178 QNEK----RFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLD 217 (651)
Q Consensus 178 qnek----~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~ 217 (651)
.... ..++..+..+..+...+..|-+.|..+..=+..|.+
T Consensus 127 ~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~ 170 (188)
T PF03962_consen 127 EKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFG 170 (188)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 9554 468888888899999999999988888887777653
No 167
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=74.31 E-value=70 Score=29.22 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHHHhHHHHHHHH
Q 036820 109 TDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-KSAKEEQQLLMNKLNSANTTISGLGKEL 177 (651)
Q Consensus 109 ~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-Kk~kEeeQSLlDQLnSLnsTLtSL~keL 177 (651)
++..+.+|..++.+-+..+..+-.+|-.+|...-+.+..-+ ..+.+....|...++.+...|..-...+
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 72 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEEL 72 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888887777766655 3466666667777766666655444433
No 168
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.19 E-value=97 Score=36.72 Aligned_cols=130 Identities=23% Similarity=0.280 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhHHHhHHHHHH---HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhh
Q 036820 131 EKDFESKLQNEQEQRTKQL---KSAKEEQQLLMNK---LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGED 204 (651)
Q Consensus 131 DedFEkRLKevQeeVkkLL---Kk~kEeeQSLlDQ---LnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEed 204 (651)
-.++...|..++..+..+. ...+.....|-++ ++.....+..+......++.++..+..++..++..+..++..
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544 3345555566665 447788888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhh
Q 036820 205 KRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVY 261 (651)
Q Consensus 205 kd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y 261 (651)
...+..+.++-+..+..++..++-+...+.++. .....++.|=-.-.|++-....|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 264 VSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEE
Confidence 999999999999999999998888888888888 77777777766666666554444
No 169
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.03 E-value=1e+02 Score=31.13 Aligned_cols=139 Identities=21% Similarity=0.274 Sum_probs=78.8
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHh
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKD-FESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTT 169 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDed-FEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsT 169 (651)
+.|+..++++++-.=++---.| =...+...-.++..|..+ |. .+..+..+++|+. +++....+++-...+...
T Consensus 45 A~Glm~~f~~l~e~v~~l~idd---~~~~f~~~~~tl~~LE~~GFn--V~~l~~RL~kLL~-lk~~~~~~~e~~k~le~~ 118 (190)
T PF05266_consen 45 AVGLMVTFANLAEKVKKLQIDD---SRSSFESLMKTLSELEEHGFN--VKFLRSRLNKLLS-LKDDQEKLLEERKKLEKK 118 (190)
T ss_pred HHHHHHHHHHHHHHHHHcccCC---cHHHHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 8999999999986544422111 122333333344444432 22 4445566666663 455566666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhh
Q 036820 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQK 242 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~ 242 (651)
+..-..+....+.-+.++...|.+++.... .+..+-+.+-..|..|+-.++-+.+++.+-|..-+.
T Consensus 119 ~~~~~~~~~~~e~~i~~Le~ki~el~~~~~-------~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 119 IEEKEAELKELESEIKELEMKILELQRQAA-------KLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555555555555544443 334444444466777777777777777776655544
No 170
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=73.55 E-value=1.9e+02 Score=33.80 Aligned_cols=213 Identities=18% Similarity=0.273 Sum_probs=119.2
Q ss_pred HhHHHHHHHHHHHhhhhHHH----HHhhHHH-----------HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHH
Q 036820 107 KATDATLEYMKARLKEKEAA----IVSLEKD-----------FESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTIS 171 (651)
Q Consensus 107 ka~~~tiesm~~kL~e~Eaa----~~~lDed-----------FEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLt 171 (651)
.-++..+..|+..++--|+| =..|+.. +|.++..++..++=.++..+.+..-+.+|...++..|.
T Consensus 196 ~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~ 275 (531)
T PF15450_consen 196 SFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVA 275 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHH
Confidence 34555555666666554433 2334344 44444444444444444456677889999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHHHhh----------------------hhHHhhhhhhhh
Q 036820 172 GLGKELQNEKRFIEELRIEIDSLQTSLL-KFGEDKRTLEEERKQKL----------------------DRIEGLQDKINL 228 (651)
Q Consensus 172 SL~keLqnek~tVEdlk~eIeql~ssLs-qAEedkd~Ae~eLeeKl----------------------~~i~~Lq~kinL 228 (651)
.+.+.++.-...++..-..=.+++..=. -.+..+..++..|.+.| +.-.||.+.|+.
T Consensus 276 ~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~ 355 (531)
T PF15450_consen 276 QLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAE 355 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9988887766665543322211111100 01112222222222222 234577888899
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHhh----------------hhHhhhhhh--------hhhhhhhhhHhcccchHHHH
Q 036820 229 LSLELREKDDGVQKLSSSLQQKETELK----------------NLNSVYKQN--------ELNARASSLLVERDDSKQKL 284 (651)
Q Consensus 229 Ls~e~~~Ke~~i~~l~SsLa~KE~e~~----------------nL~~~y~qt--------~Ln~~v~sL~~ek~~~~~k~ 284 (651)
|-..|+|-.+++-.|++.|.--|..+. +|+.|-.-- ++..+|.+|-..-.+...|+
T Consensus 356 l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc 435 (531)
T PF15450_consen 356 LMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKC 435 (531)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999888887765554432 122211100 67777777777666776676
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 036820 285 EAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDE 329 (651)
Q Consensus 285 ~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e 329 (651)
.-+..+ .++|-+.|.++ ++.++.-+.+-|-+-|+.
T Consensus 436 ~~~Ksd-~d~kIdtE~k~---------R~~eV~~vRqELa~lLss 470 (531)
T PF15450_consen 436 DLHKSD-SDTKIDTEGKA---------REREVGAVRQELATLLSS 470 (531)
T ss_pred HHHHhh-hhhhccHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 654333 45566666554 344445555555544443
No 171
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=73.00 E-value=1.4e+02 Score=32.05 Aligned_cols=244 Identities=21% Similarity=0.279 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhH-Hhhhhhhhhhhhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI-EGLQDKINLLSLELRE 235 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i-~~Lq~kinLLs~e~~~ 235 (651)
..|..+..++-.....+...+...+.-...+....+.+...+.++... +.||+.+ ..||.--+.+--+.+.
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~--------k~KLE~LCRELQk~Nk~lkeE~~~ 96 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILA--------KSKLESLCRELQKQNKKLKEESKR 96 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555666666555544433 3344444 4444444444333221
Q ss_pred h---hh-hhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhH
Q 036820 236 K---DD-GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLRE 311 (651)
Q Consensus 236 K---e~-~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~e 311 (651)
. ++ .-.+++..+...=.+++.-.. +-+.+-..+.-+.....+|+..|..+|. .|--+=..++..
T Consensus 97 ~~~eee~kR~el~~kFq~~L~dIq~~~e-----e~~~~~~k~~~eN~~L~eKlK~l~eQye-------~rE~~~~~~~k~ 164 (309)
T PF09728_consen 97 RAREEEEKRKELSEKFQATLKDIQAQME-----EQSERNIKLREENEELREKLKSLIEQYE-------LREEHFEKLLKQ 164 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhH
Confidence 1 11 111122222111111111100 2222334478888888999999999996 555555667788
Q ss_pred hHHHHHHHHHHHHHHHhHhhhchhHHHhhhh----hHHHHHHHHHHhhhhhhhhHH---HHHhhHHHHHhhhhhhhHHHH
Q 036820 312 KKEELHQLKEKLELTLDEACENRATIAKFTQ----EKDDLRKMLDNELGNVKNLKY---ELQITQETLETTRNEASDLEK 384 (651)
Q Consensus 312 ke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~----e~~~~r~mLd~E~~~~k~L~~---~lq~Tqe~L~~sR~e~s~L~~ 384 (651)
+|-++.-++-+|..+--.+......-..+.. +......|...|..-...|.. -..--|++|.+|..=+.-.-.
T Consensus 165 keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~ 244 (309)
T PF09728_consen 165 KELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKK 244 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888888877766554444433333322 111444555555543333322 224567888888888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Q 036820 385 QLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE 420 (651)
Q Consensus 385 ~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e 420 (651)
+.+.....+..|+.+...+..-|...-..|-.-+++
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~ee 280 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEE 280 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 889888899999988888888777776665544443
No 172
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.00 E-value=81 Score=29.84 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh
Q 036820 349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS---CADLETEISRIRAEFAEVKHTLGNSLDEAKRSG 425 (651)
Q Consensus 349 ~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~---~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~ 425 (651)
+.++.|+.. |++++..-+..=...++|+.+|..+.++.+.. ...|+.++..++....-+-+.|.-|-++.+
T Consensus 26 r~~E~E~~~---l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve--- 99 (120)
T PF12325_consen 26 RRLEGELAS---LQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE--- 99 (120)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH---
Confidence 334444433 33344444444444455555555555444332 223344444444444444444444444332
Q ss_pred hhhhhhHHhHHHHHH
Q 036820 426 EVLAGELFAAKEVLK 440 (651)
Q Consensus 426 ~~Ls~El~s~ke~l~ 440 (651)
-|=.-+.-+|+|.+
T Consensus 100 -EL~~Dv~DlK~myr 113 (120)
T PF12325_consen 100 -ELRADVQDLKEMYR 113 (120)
T ss_pred -HHHHHHHHHHHHHH
Confidence 23344455555554
No 173
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.74 E-value=37 Score=32.47 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhh
Q 036820 175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLL 229 (651)
Q Consensus 175 keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLL 229 (651)
+++.+.+.-+++....+...++.+.....++..+..++..=-..+..|..||..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666666666666666666677777777654
No 174
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=72.50 E-value=28 Score=30.32 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=44.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHh---HHHhHHHHHHHHHHHHhHHHHHHHHHh
Q 036820 124 EAAIVSLEKDFESKLQNEQEQRTKQLKSA---KEEQQLLMNKLNSANTTISGLGKELQN 179 (651)
Q Consensus 124 Eaa~~~lDedFEkRLKevQeeVkkLLKk~---kEeeQSLlDQLnSLnsTLtSL~keLqn 179 (651)
--||..|-++|+++++.-+.....|-.++ ......|-.|++.+-.+|..+.+.+..
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999664 455667777777777777777666543
No 175
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.29 E-value=54 Score=35.31 Aligned_cols=93 Identities=25% Similarity=0.371 Sum_probs=68.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820 308 RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~ 387 (651)
-+++..+.|..+|||+.-|. +.-|.|-+|+. -|--+ |.-||+.|..-+|++-..+.+.-+...+++
T Consensus 78 s~r~lk~~l~evEekyrkAM-------v~naQLDNek~----~l~yq---vd~Lkd~lee~eE~~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAM-------VSNAQLDNEKS----ALMYQ---VDLLKDKLEELEETLAQLQREYREKIRELE 143 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHH-------HHHhhhchHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999998876 33344444443 33333 456889999999999999999888888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 388 QSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 388 ~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
..++.|..|..++..|..++.+-.+.+
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777777776666555
No 176
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.77 E-value=2.3e+02 Score=34.12 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=76.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHhHhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH
Q 036820 454 EATAENRDSLRKELVNIYKKAEATANDLK---EQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530 (651)
Q Consensus 454 ~~~~e~rd~L~kEL~d~YKK~E~t~~eL~---~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~ 530 (651)
....-.|..+-++..|.-++.+..-++.+ .+...|...-..+++|++ ..-++.-||+-+.
T Consensus 394 ~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~-----------------~~~k~~~e~e~s~ 456 (716)
T KOG4593|consen 394 ARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQ-----------------KVDKHSLEMEASM 456 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHH-----------------HHHHhhHhhhhhh
Confidence 33444555666666666666665544432 333444444444444444 3334455666665
Q ss_pred HHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhH
Q 036820 531 LELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLE 597 (651)
Q Consensus 531 ~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLE 597 (651)
-.+..++.-...+...++.+-.+|.-.|..-.+.---+++-.+-+.--|--.-+|++.|++-++-|.
T Consensus 457 ~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 457 EELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677777777777777777766666555555555555556667778888888776665
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.60 E-value=1.3e+02 Score=33.18 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036820 432 LFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT 502 (651)
Q Consensus 432 l~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~ 502 (651)
|..+++-.+-+++-....+++|..+++..+..+.++-+-=.+.- -+-=|+.=|+.+..|..|+.-|.=+|
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt-D~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT-DGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33334444444444444444444444444444433322111111 12235666666777777766655443
No 178
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=71.46 E-value=1.6e+02 Score=32.19 Aligned_cols=67 Identities=30% Similarity=0.457 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHH--hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQ--NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLS 230 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLq--nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs 230 (651)
++..+|+.-+.++..+...|. +-...+...+..++.+..++. ..+...|+.+-..++.|..++..++
T Consensus 324 a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~------~a~~~~L~~~~~rL~~l~~rL~~ls 392 (438)
T PRK00286 324 ALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLR------RAMRRQLKRKRQRLEALAQQLEALS 392 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444444444444444442 222333333344444444333 3355555666666666666665554
No 179
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=71.26 E-value=45 Score=35.35 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=96.2
Q ss_pred chhhHHHHHhhhhh---hhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHH
Q 036820 91 RSGVLGALYALTQN---EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-KSAKEEQQLLMNKLNSA 166 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~---ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-Kk~kEeeQSLlDQLnSL 166 (651)
.-+-+-+||.=.-+ .-+.++--+++|....+|-|.-++.+...|+.-....=....+.- .+.-..-+.+-.||+.+
T Consensus 111 ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l 190 (254)
T KOG2196|consen 111 NGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRL 190 (254)
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66677789975433 346788889999999999999999988888874442222222222 11222234566788888
Q ss_pred HHhHHHHHHHHHhHHHHHHHH--HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhh
Q 036820 167 NTTISGLGKELQNEKRFIEEL--RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKIN 227 (651)
Q Consensus 167 nsTLtSL~keLqnek~tVEdl--k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kin 227 (651)
-..|..+...|.+....+..+ ..+|.+..+.-.++=.-++.-.-.|+.|+|.|.-++|-.+
T Consensus 191 ~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~~~~~ 253 (254)
T KOG2196|consen 191 SEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLKDDHN 253 (254)
T ss_pred HhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccc
Confidence 888888888888888877764 4566666666666666777888888999998887776544
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.12 E-value=1.7e+02 Score=32.14 Aligned_cols=153 Identities=22% Similarity=0.380 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT---LGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELE 454 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~---l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~ 454 (651)
+-..|+.-|-+++.-|..|.++|.-|+..+.|++.- |..++...+.....+..-... .+=+....+|.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLE 136 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLE 136 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHH
Confidence 556788899999999999999999999999888765 555555544433322211111 22222333333
Q ss_pred HHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH
Q 036820 455 ATAENRDSLRKELVNIYKKAEATANDLKEQKEI----VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530 (651)
Q Consensus 455 ~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekki----v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~ 530 (651)
...+....|+.++ +-+----+|++.||.. +..||.||..+ +...+.|- + |+|.
T Consensus 137 k~~~q~~qLe~d~----qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~----L~g~~~ri-v--DIDa------------ 193 (319)
T PF09789_consen 137 KLREQIEQLERDL----QSLLDEKEELVTERDAYKCKAHRLNHELNYI----LNGDENRI-V--DIDA------------ 193 (319)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCCCCc-c--cHHH------------
Confidence 3333333333332 2222333444445443 56789888543 34433332 2 5552
Q ss_pred HHHhHHHhhhhhccccchhHHHHHHHhHHHHHhh
Q 036820 531 LELSKNLEKANSQISNLEDEKAVLYKSLTEQKSI 564 (651)
Q Consensus 531 ~~LS~~Le~ans~issle~eKevL~ksl~eqk~~ 564 (651)
|--|=-.-+.||..++.|+..+..++.-=|.+
T Consensus 194 --Li~ENRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 194 --LIMENRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222345678888888888887777766653
No 181
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.02 E-value=1.7e+02 Score=32.12 Aligned_cols=143 Identities=26% Similarity=0.305 Sum_probs=74.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh---hhhhhh
Q 036820 173 LGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL---SSSLQQ 249 (651)
Q Consensus 173 L~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l---~SsLa~ 249 (651)
+...|...++-.-.+..++..++..+..+.+|+..++..+..- .+.-..+- ..-...+++.-|..| .....+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~----r~~~~~~~-~~~~~~ere~lV~qLEk~~~q~~q 144 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ----RVGDEGIG-ARHFPHEREDLVEQLEKLREQIEQ 144 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh----hhhhcccc-ccccchHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666666666666666666655544431 11111110 111113444444433 111112
Q ss_pred hHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhh-H---hHHHHHHHHHHHHH
Q 036820 250 KETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLR-E---KKEELHQLKEKLEL 325 (651)
Q Consensus 250 KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~-e---ke~~l~qLeekl~~ 325 (651)
-|.||+.+ =...+-+..|+|.+..|++-|..|.+.+=...+.|-. |..=|. | -..+|.|+++-.+.
T Consensus 145 Le~d~qs~---------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-DIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 145 LERDLQSL---------LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-DIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 1235678899999999999999999999888888755 554332 2 12345555555554
Q ss_pred HHhHh
Q 036820 326 TLDEA 330 (651)
Q Consensus 326 Al~e~ 330 (651)
+-.-.
T Consensus 215 ~k~~i 219 (319)
T PF09789_consen 215 LKQTI 219 (319)
T ss_pred HHHHH
Confidence 44433
No 182
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.75 E-value=1.6e+02 Score=31.68 Aligned_cols=143 Identities=21% Similarity=0.281 Sum_probs=87.5
Q ss_pred hhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHH
Q 036820 270 ASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRK 349 (651)
Q Consensus 270 v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~ 349 (651)
+...+..-+...+|+..|.+-|+++-... .+...|...+..+-+.+.+-.+++..-++-+..-+...-.|-.|+..--+
T Consensus 10 l~q~l~~l~~~eeK~~~L~kk~~ell~e~-k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk 88 (309)
T PF09728_consen 10 LMQSLNKLSSPEEKLEALCKKYAELLEEM-KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNK 88 (309)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667999999999999985422 33455555555555555555566655555444444444555555555555
Q ss_pred HHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 350 MLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 350 mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
+|-+|...+ .+.+-+.-.+.-..+.+-+.+++..+++-+.-|..+..+-..|..-|...-+-+.
T Consensus 89 ~lkeE~~~~--~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 89 KLKEESKRR--AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 565554333 2333344444555666677788888888888887777777777666665555444
No 183
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.62 E-value=3.1e+02 Score=34.65 Aligned_cols=176 Identities=28% Similarity=0.357 Sum_probs=100.5
Q ss_pred HHHHHHH--HHhHhhhchhHHHhhhhh----HH-HHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 319 LKEKLEL--TLDEACENRATIAKFTQE----KD-DLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 319 Leekl~~--Al~e~~k~~~~Ia~L~~e----~~-~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
..++|.. |+.---+|+...+.|-.- ++ ..++|+.-|- .+|+|+-+....++.+ -.+-.++-++.+
T Consensus 365 e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~lelek-e~KnLs~k~e~Leeri-------~ql~qq~~eled 436 (1195)
T KOG4643|consen 365 ENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEK-EHKNLSKKHEILEERI-------NQLLQQLAELED 436 (1195)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHH-HhHhHhHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3444544 666666777666655432 22 2344443332 2455666655555543 345666777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhh-------hhh
Q 036820 392 SCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRD-------SLR 464 (651)
Q Consensus 392 ~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd-------~L~ 464 (651)
.-++|..+..+++.|..-+...+.+. +...+.+.- +.+.-+.+...-+++.+-...|.....+|+ ++.
T Consensus 437 ~~K~L~~E~ekl~~e~~t~~~s~~rq----~~e~e~~~q-~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~ 511 (1195)
T KOG4643|consen 437 LEKKLQFELEKLLEETSTVTRSLSRQ----SLENEELDQ-LLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALK 511 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766655555444 333433332 334445555555666666667777666665 355
Q ss_pred HHHHHHHHHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 036820 465 KELVNIYKKAEA----TANDLKEQKEIVSSLNKELQALEKQTSKDKE 507 (651)
Q Consensus 465 kEL~d~YKK~E~----t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~E 507 (651)
.+|..-||+.-. +.+-+.+=...+.+|.+|=.-|-+||..=+.
T Consensus 512 ~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 512 NELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 667777776433 2333333345566777777777777776555
No 184
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.59 E-value=2.1e+02 Score=32.64 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
..+-.|+|.+..+ ..+...++.....+..+..++.++..........++.++-++
T Consensus 144 ~~~~~lLD~~~~~----~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql 198 (563)
T TIGR00634 144 DEQRQLLDTFAGA----NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQL 198 (563)
T ss_pred HHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555442 244555555555555555555555555444444444444433
No 185
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.35 E-value=1.8e+02 Score=34.68 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHh---HHHhHH----HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820 125 AAIVSLEKDFESKLQNEQEQRTKQLKSA---KEEQQL----LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197 (651)
Q Consensus 125 aa~~~lDedFEkRLKevQeeVkkLLKk~---kEeeQS----LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ss 197 (651)
.|+..+++.|-.++..++.++..=++.. .+.+.. +.+....++.+-..+.+++..+.+..+.+...++..-..
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677776666666666555443211 221211 222222233333444455555555555555555555444
Q ss_pred HHhhhhhHHHHHHHHHHhhh
Q 036820 198 LLKFGEDKRTLEEERKQKLD 217 (651)
Q Consensus 198 LsqAEedkd~Ae~eLeeKl~ 217 (651)
+....-..=.++++..+.|+
T Consensus 623 l~~~~P~LS~AEr~~~~EL~ 642 (717)
T PF10168_consen 623 LNSQLPVLSEAEREFKKELE 642 (717)
T ss_pred HhccCCCCCHHHHHHHHHHH
Confidence 43322233344444444443
No 186
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.02 E-value=2.7e+02 Score=33.73 Aligned_cols=372 Identities=20% Similarity=0.258 Sum_probs=205.3
Q ss_pred HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhh-hhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh-hhHhhhhh
Q 036820 186 ELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQD-KINLLSLELREKDDGVQKLSSSLQQKETELK-NLNSVYKQ 263 (651)
Q Consensus 186 dlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~-kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~-nL~~~y~q 263 (651)
..+.++++++..+..|+..-..++.-.+..|+.+.-+|. .++-|++.- -..+ ++|..|=.++. .|+++-
T Consensus 112 agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aH------q~~l-~sL~~k~~~Le~~L~~le-- 182 (739)
T PF07111_consen 112 AGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAH------QEAL-ASLTSKAEELEKSLESLE-- 182 (739)
T ss_pred hhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHH--
Confidence 566778999999999999888888888888888888764 445444421 1112 22222222221 122211
Q ss_pred hhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhc----------
Q 036820 264 NELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACEN---------- 333 (651)
Q Consensus 264 t~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~---------- 333 (651)
++.-....+-..+..+-+.|.++++- ++..+++. -..+++|.-.++.....-..+
T Consensus 183 ----~~r~~e~~~La~~q~e~d~L~~qLsk------~~~~le~q-----~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L 247 (739)
T PF07111_consen 183 ----TRRAGEAKELAEAQREADLLREQLSK------TQEELEAQ-----VTLVEQLRKYVGEQVPPEVHSQAWEPEREEL 247 (739)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHH-----HHHHHHHHHHHhhhCCcccccHHHHHHHHHH
Confidence 11111111111111222333333322 22222221 123445555554444322221
Q ss_pred hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhH----------------------HHHHhhhhhhhHHHHHH-----
Q 036820 334 RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQ----------------------ETLETTRNEASDLEKQL----- 386 (651)
Q Consensus 334 ~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tq----------------------e~L~~sR~e~s~L~~~L----- 386 (651)
...|--|..+++++..-++==-.-|.+|.|.|-.-+ --|.-.|..||.|-.+|
T Consensus 248 ~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQel 327 (739)
T PF07111_consen 248 LETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQEL 327 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 234555666777766655544455666666554333 34566799999997654
Q ss_pred ------HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH--hh-hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 036820 387 ------KQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAK--RS-GEVLAGELFAAKEVLKKASEELQNVSHELEATA 457 (651)
Q Consensus 387 ------~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak--~~-~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~ 457 (651)
.+++..|..|+-++-.-..|-+-+..+|+.+..+.+ ++ ++.|..||..+.+...+.+..-...=.+|..++
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ 407 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVS 407 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888889988887754 44 458999999999999988888888888888888
Q ss_pred HhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH
Q 036820 458 ENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSK--DKEARKSLETDLEEATKSLDEMNRNALELSK 535 (651)
Q Consensus 458 e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~--d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~ 535 (651)
++-.+.|-- ++++.-.+..-=.=+-+|+..|-+-++.+-. .==|||.-=+. .+.++-+-.--.+-.|+.
T Consensus 408 eav~S~q~~-------L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaq--lrqe~~~~~pp~~~dL~~ 478 (739)
T PF07111_consen 408 EAVSSSQQW-------LESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQ--LRQEQCPPSPPSVTDLSL 478 (739)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHH--HHhccCCCCCCchhhHHH
Confidence 888887764 4444444443333445677776655554422 11233322111 122222221122334455
Q ss_pred HHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhc
Q 036820 536 NLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASA 603 (651)
Q Consensus 536 ~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsA 603 (651)
+|...+ +|+--|. .+=+-.+.--|.-+-+|+- ..+.||-.|.+.+.-||.+|.-.
T Consensus 479 ELqqLR-------eERdRl~---aeLqlSa~liqqeV~~ArE---qgeaE~~~Lse~aqqLE~~Lq~~ 533 (739)
T PF07111_consen 479 ELQQLR-------EERDRLD---AELQLSARLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQEK 533 (739)
T ss_pred HHHHHH-------HHHHHHH---HHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 554432 2322221 1112233333333444443 55677888888888888877443
No 187
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=68.88 E-value=2.1e+02 Score=32.44 Aligned_cols=152 Identities=27% Similarity=0.344 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATA 457 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~ 457 (651)
|.-.|..+.+.++.-++.|+.||..+..|+..+...+.. +- +.+++--.+++..-+.+.++
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~- 335 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG--------------EQ----ESFREQPQELSQQLEPELTT- 335 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HH----HHHHHHHHHHHHHHHHHhch-
Confidence 345566667777777777777777777777665543322 22 22333333333333333333
Q ss_pred HhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHH
Q 036820 458 ENRDSLRKELVNIYKKAEATANDLKEQKEIVSS----LNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALEL 533 (651)
Q Consensus 458 e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~t----Ln~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~L 533 (651)
.-|+-=.|.-+.+..+++...+..... -..|++.|-.|+.... +-+=..|+|.=..+|.+
T Consensus 336 ------e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~--~~s~~~elE~rl~~lt~-------- 399 (511)
T PF09787_consen 336 ------EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA--SSSSWNELESRLTQLTE-------- 399 (511)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh--ccCCcHhHHHHHhhccH--------
Confidence 345555666666677777666655544 3456666766666543 11223455533333322
Q ss_pred hHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHh
Q 036820 534 SKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELA 601 (651)
Q Consensus 534 S~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELA 601 (651)
+|- || |..+-+||.||-.+--+-.+++..+-
T Consensus 400 -----------------------~Li-~K-------------Q~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 400 -----------------------SLI-QK-------------QTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred -----------------------HHH-HH-------------HHHHHHHHhhhhhccccHHHHHHHHH
Confidence 111 33 45566999999999999999998876
No 188
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.76 E-value=1.4e+02 Score=30.24 Aligned_cols=177 Identities=20% Similarity=0.320 Sum_probs=85.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHH
Q 036820 308 RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLK 387 (651)
Q Consensus 308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~ 387 (651)
+|+.+--.+.+|.-.+.. -+..|+++..|-..++.+--.=..++.+.-+.=..--.-+....+|+-.|-+.|.
T Consensus 6 vlSar~~ki~~L~n~l~e-------lq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAE-------LQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544332 2455666666666666654443333321111000111112333445555555555
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhc--chHHHHhh--hhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh
Q 036820 388 QSKDSCADLETEISRIRAEFAEVKHTLGN--SLDEAKRS--GEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL 463 (651)
Q Consensus 388 ~~~~~~~~L~~qiskl~~E~~e~ke~l~~--~l~eak~~--~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L 463 (651)
.+...+..++..+....+|+-.++..++. ++.+.+.. .+.|...|..+..-+......+....+++.-.. .+.
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~ 155 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHH
Confidence 55555555555555555555555544443 22222222 245666777777777777777777666655433 334
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036820 464 RKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQ 501 (651)
Q Consensus 464 ~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q 501 (651)
+.+|.---+|.-.+.. -+.+|..|++.|..+
T Consensus 156 ~rql~~e~kK~~~~~~-------~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQE-------EVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4444433333333322 234555666655443
No 189
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=68.63 E-value=1.9e+02 Score=31.74 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=105.7
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH----------H----Hh-------HHHhHHHHHHHH
Q 036820 106 KKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL----------K----SA-------KEEQQLLMNKLN 164 (651)
Q Consensus 106 kka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL----------K----k~-------kEeeQSLlDQLn 164 (651)
+..++.||+....+|..+.+|--.|+.|..+|.....=+-.-.- + .+ ..-...-.+-+.
T Consensus 132 ~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~ 211 (384)
T PF03148_consen 132 KRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQ 211 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHH
Confidence 55688899999999999999999999999999886654433222 0 00 111111122233
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHH--------HHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEI--------DSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eI--------eql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
.+.+.+..-...-..+..++..+...+ .-+..+|..+...+..++-+|.+-++.|..++.=|..|..-|.||
T Consensus 212 ~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k 291 (384)
T PF03148_consen 212 RAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDK 291 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222222222222222222221 223444555555556666666666666666666666666666666
Q ss_pred hhhhhhhhhhhhhhHHHhh------hhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhh
Q 036820 237 DDGVQKLSSSLQQKETELK------NLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKL 296 (651)
Q Consensus 237 e~~i~~l~SsLa~KE~e~~------nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ 296 (651)
+.-+. +++--.+.. .||...-|..|-..|..|..-.....++|.+.+..|..|..
T Consensus 292 ~~~lk-----vaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 292 EGPLK-----VAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HhhHH-----HHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 222222222 26666667777777877777777777888877777777653
No 190
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=68.54 E-value=3.5e+02 Score=34.85 Aligned_cols=433 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHh
Q 036820 100 ALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQN 179 (651)
Q Consensus 100 ~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqn 179 (651)
++..+.-.++-.-|..-++-++..++.+.-++..-+ +-+....+--.+.-+..-...-...++.
T Consensus 486 ~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~----------------~~~~~~~~~~~~~~~~k~~~~k~~~~~k 549 (1294)
T KOG0962|consen 486 AEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELD----------------GLNKDAEKRAKLELLKKKLRKKDAELRK 549 (1294)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhHHHhhhhH
Q 036820 180 EKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQ-QKETELKNLN 258 (651)
Q Consensus 180 ek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa-~KE~e~~nL~ 258 (651)
++..+.+.......---... ..++..+.-.=..|..+++|.+-++...-.-|...-..+.++. .++.+++..-
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~------~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~ 623 (1294)
T KOG0962|consen 550 IKSRLSDEKGRAIEFPLTND------RSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKE 623 (1294)
T ss_pred HHHhcchhhhhhhccCccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q ss_pred hhhhhh-----hhhhhhhhhHhcccchHHHHHHHHHHHHHhhh----------------chhhhhhhhhhhhhHhHHHHH
Q 036820 259 SVYKQN-----ELNARASSLLVERDDSKQKLEAVQKEYKELKL----------------SSENETASNAKRLREKKEELH 317 (651)
Q Consensus 259 ~~y~qt-----~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~----------------ssE~~aa~da~lL~eke~~l~ 317 (651)
.+..+- +.++.+..|-.+...+.+-++.++---+=... +.++... .++...-.+.+.
T Consensus 624 ~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee--~ef~~~l~~~i~ 701 (1294)
T KOG0962|consen 624 FFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEE--VEFIKKLESKID 701 (1294)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHH--HHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhh----hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhh
Q 036820 318 QLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGN----VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSC 393 (651)
Q Consensus 318 qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~----~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~ 393 (651)
-.=+++..++...++-.-+ -..+.-++.+...++.. .+-++.+++-+.+-+.+.-.+..+....|+..+.--
T Consensus 702 s~p~~~~~~~~~l~k~~k~----~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~ 777 (1294)
T KOG0962|consen 702 SAPDKLEEAEVELSKEEKI----FEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAE 777 (1294)
T ss_pred ccchhHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh--hhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHH
Q 036820 394 ADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA--GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIY 471 (651)
Q Consensus 394 ~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls--~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~Y 471 (651)
..++.-+-.+..+-...++.=++..+-...+++.=+ |..-++.|+.. +.....+.++-+.||+-...
T Consensus 778 ~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~-----------Ek~~~~~~~~~~rke~E~~~ 846 (1294)
T KOG0962|consen 778 ESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRK-----------EKSKKQESLDKLRKEIECLQ 846 (1294)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHH
Q 036820 472 KKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEK 551 (651)
Q Consensus 472 KK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eK 551 (651)
|+......+.-.......++--+...+..|+ +++.-.-..+.+.+..-..+...+...-.++.++..++
T Consensus 847 k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l-----------~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l 915 (1294)
T KOG0962|consen 847 KEVIEQEREISRLINLRNELKEEKQKIERSL-----------ARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVEL 915 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhH
Q ss_pred HHHHHhHHHHHhh----hHHHhhchHHHHHHHHHh
Q 036820 552 AVLYKSLTEQKSI----ANESRENMEDAHNLVMRL 582 (651)
Q Consensus 552 evL~ksl~eqk~~----t~EAqeN~eDA~nli~~L 582 (651)
+.+..+..+-++. -..||++..|-...+..|
T Consensus 916 ~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 916 EEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 191
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=68.46 E-value=35 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=19.2
Q ss_pred hhhHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 216 LDRIEGLQDKINLLSLELREKDDGVQKLSSS 246 (651)
Q Consensus 216 l~~i~~Lq~kinLLs~e~~~Ke~~i~~l~Ss 246 (651)
++.++.-.++++-+...+.+-...++++++|
T Consensus 60 ~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~s 90 (90)
T PF06103_consen 60 LEDVNEKLEKVDPVFEAVADLGESVSELNSS 90 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555666666777777777777764
No 192
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.28 E-value=3.3e+02 Score=34.46 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=18.2
Q ss_pred HhhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 036820 119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQ 148 (651)
Q Consensus 119 kL~e~Eaa~~~lDedFEkRLKevQeeVkkL 148 (651)
+.+++-++....=.+|.+.+.+.+++++.+
T Consensus 62 ~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~ 91 (1109)
T PRK10929 62 GSLERAKQYQQVIDNFPKLSAELRQQLNNE 91 (1109)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 344445555555667777777777766643
No 193
>PHA03161 hypothetical protein; Provisional
Probab=67.52 E-value=52 Score=32.58 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=67.9
Q ss_pred HHHHHHHHHHH-----HHhHHHhHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 139 QNEQEQRTKQL-----KSAKEEQQLLMNKLNSANTTISGLGK--ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 139 KevQeeVkkLL-----Kk~kEeeQSLlDQLnSLnsTLtSL~k--eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
.+.+.+|++.+ -+||+...-+.-|++.++.-|....+ ....+++.|..+...|..-..-+. .+..=
T Consensus 11 ~~lEa~VnKr~aVS~fDRFG~~s~lF~~Qf~~t~~~lr~~~~~~~~~~i~~~v~~l~~~I~~k~kE~~-------~L~~f 83 (150)
T PHA03161 11 SAFEAEINKKASVSLFDRFGEKNCIFLHQLDHTKKSLIKHENLKKQKSIEGMLQAVDLSIQEKKKELS-------LLKAF 83 (150)
T ss_pred HHHHHHHHhhhhhhHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhc
Confidence 45567777776 55899999999999999999988765 445566666666655555554444 44443
Q ss_pred HHHhhhhHHhhhhhhhhhhhhhhhhhhhhh
Q 036820 212 RKQKLDRIEGLQDKINLLSLELREKDDGVQ 241 (651)
Q Consensus 212 LeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~ 241 (651)
=.-|++.++.|+|||.-|..+|.--=+.++
T Consensus 84 d~kkl~~~E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 84 DRHKLSAAEDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999998888765444443
No 194
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.24 E-value=48 Score=33.13 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=76.5
Q ss_pred HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHH---------H----hhhhHHHHHHHHHHHH------HHHHH
Q 036820 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQS---------K----DSCADLETEISRIRAE------FAEVK 411 (651)
Q Consensus 351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~---------~----~~~~~L~~qiskl~~E------~~e~k 411 (651)
||+=.+.-....+.++.-|.-...+|....+|+.++... + .-..+|+.=+.+|.+| +.+|-
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN 83 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVN 83 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444445566677777777888888888888888432 1 1246677777777654 67788
Q ss_pred HHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHH
Q 036820 412 HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELE 454 (651)
Q Consensus 412 e~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~ 454 (651)
..|.-.++.+....+.|+.+|..+..-+....++|+.--.+.-
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998888886655444
No 195
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=67.05 E-value=26 Score=30.83 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=37.4
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHH
Q 036820 310 REKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD 352 (651)
Q Consensus 310 ~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd 352 (651)
+.-.+.|++...+|+.||-.------+||.|.+|++..|..|.
T Consensus 25 f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 4556789999999999998777777899999999999998775
No 196
>PRK11281 hypothetical protein; Provisional
Probab=66.85 E-value=3.5e+02 Score=34.22 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH
Q 036820 481 LKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530 (651)
Q Consensus 481 L~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~ 530 (651)
+.+|-.+|..|-.+|...-.++..-..-.......++.++.++.-++...
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888877777777766555555555666677776666554443
No 197
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.83 E-value=2e+02 Score=31.03 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=26.7
Q ss_pred hhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHH
Q 036820 239 GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKL 284 (651)
Q Consensus 239 ~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~ 284 (651)
.|+.+.+.|...+.++..|...|.-. +-+|..+-....+.+..|
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~--hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPN--HPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHHHHH
Confidence 46777888888888888888887543 333444333333333333
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.75 E-value=75 Score=33.97 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=24.9
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 368 TQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 368 Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
.++.+.....|-..+.++|.++..-+..|..|+..++.|..+.+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555566666666666666666666666555543
No 199
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.62 E-value=1.1e+02 Score=33.13 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHH
Q 036820 96 GALYALTQNEKKATDATLEYMKARLKEKEAAIV 128 (651)
Q Consensus 96 g~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~ 128 (651)
+|+|...++--...+.++..+...+......+.
T Consensus 45 ~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 45 AGGWYWQQQQLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666556677778887777776666655
No 200
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.60 E-value=2.7e+02 Score=32.50 Aligned_cols=91 Identities=24% Similarity=0.324 Sum_probs=55.4
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhh----hhhhhhhhhhhhhh
Q 036820 168 TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLL----SLELREKDDGVQKL 243 (651)
Q Consensus 168 sTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLL----s~e~~~Ke~~i~~l 243 (651)
.+|..+...++.++.-..--..+-.-+..++..++..++....+|++-.+.|..|||-+.-- -.+|..--+++-++
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555555566666677777777777777777777777777643221 12344555666666
Q ss_pred hhhhhhhHHHhhhhH
Q 036820 244 SSSLQQKETELKNLN 258 (651)
Q Consensus 244 ~SsLa~KE~e~~nL~ 258 (651)
|-.|+....+++.|.
T Consensus 500 NeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 500 NEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777776666666654
No 201
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.13 E-value=61 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERK 213 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLe 213 (651)
.|..+..+|..+.+....+...|.+=+..++.+..++..+...++.....|.
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666665555554
No 202
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.29 E-value=1.2e+02 Score=28.79 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820 166 ANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200 (651)
Q Consensus 166 LnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq 200 (651)
+++++.+++..-.+.-..+.++..+|..+..++..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444443
No 203
>PRK14143 heat shock protein GrpE; Provisional
Probab=64.03 E-value=91 Score=32.57 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=62.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhHHHHHhhhHHH
Q 036820 375 TRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKASEELQNVSHEL 453 (651)
Q Consensus 375 sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~eeL~~~S~eL 453 (651)
...++..|..++...+....+|..+.-++.++|.-.|....+..++++.- ..-++.+|--+-+-|.++-.-+.......
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~ 144 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEA 144 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhH
Confidence 33445556666666666666777888899999999999999988877654 45677777777777777644332222222
Q ss_pred HHHHHhhhhhhHHHHHHHHHh
Q 036820 454 EATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 454 ~~~~e~rd~L~kEL~d~YKK~ 474 (651)
.....--+.+.+.|++++++.
T Consensus 145 ~~l~~Gve~i~k~l~~~L~k~ 165 (238)
T PRK14143 145 QALHRSYQGLYKQLVDVLKRL 165 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 233333334445555555543
No 204
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.82 E-value=2.7e+02 Score=31.90 Aligned_cols=77 Identities=31% Similarity=0.329 Sum_probs=39.3
Q ss_pred hhhhhhHHhHHHHHHH---hHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036820 426 EVLAGELFAAKEVLKK---ASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT 502 (651)
Q Consensus 426 ~~Ls~El~s~ke~l~k---~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~ 502 (651)
+.|.+=+.-++.++.+ +..+|+.-+.-|...+..-..+++|+-++-|++.+-..++..=..++ ..+++...|+.|+
T Consensus 244 eKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~-v~lke~~~Le~q~ 322 (446)
T KOG4438|consen 244 EKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKV-VELKEILELEDQI 322 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHH
Confidence 3344444444444433 34455555555555556666666666666666666555544333332 2344555555554
Q ss_pred h
Q 036820 503 S 503 (651)
Q Consensus 503 ~ 503 (651)
.
T Consensus 323 e 323 (446)
T KOG4438|consen 323 E 323 (446)
T ss_pred H
Confidence 3
No 205
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=63.69 E-value=2.1e+02 Score=30.62 Aligned_cols=121 Identities=30% Similarity=0.398 Sum_probs=90.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH--hHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccch---
Q 036820 474 AEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK--SLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLE--- 548 (651)
Q Consensus 474 ~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk--~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle--- 548 (651)
+....+.|-+|-+.+..|-.++++++++.-+..|.=| ..=.|||..|.=| +.||+.|-.+..-.+++.
T Consensus 105 L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LL-------LsLs~RLaRve~aL~~~~~~~ 177 (264)
T PF08687_consen 105 LQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLL-------LSLSGRLARVENALSSLDEDA 177 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCcccc
Confidence 3455667788889999999999999999999888765 3456887776544 899999999999888888
Q ss_pred --hHHHHHH---HhHHHHHhhhHHHhhchHHHHHHHHH-----------------------hhhhhhhhhHhhhhhHHHH
Q 036820 549 --DEKAVLY---KSLTEQKSIANESRENMEDAHNLVMR-----------------------LGQERKSLDKRSKKLEEEL 600 (651)
Q Consensus 549 --~eKevL~---ksl~eqk~~t~EAqeN~eDA~nli~~-----------------------Lg~ERE~~e~r~kkLEeEL 600 (651)
+||..|. +-|..|-.-+++-.+|+.-=+..|.. |=.|.-.++-|.|-.||-|
T Consensus 178 ~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~mKa~Ll~eqreLddkiklgeEQL 257 (264)
T PF08687_consen 178 DPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEEQLADYRHFVKMKAALLIEQRELDDKIKLGEEQL 257 (264)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 6888774 56888988889999888765554443 3345556666666666665
Q ss_pred h
Q 036820 601 A 601 (651)
Q Consensus 601 A 601 (651)
+
T Consensus 258 ~ 258 (264)
T PF08687_consen 258 E 258 (264)
T ss_dssp H
T ss_pred H
Confidence 4
No 206
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.83 E-value=1.9e+02 Score=29.81 Aligned_cols=168 Identities=22% Similarity=0.337 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhH---HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 036820 137 KLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNE---KRFIEELRIEIDSLQTSLLKFGEDKRTLEEERK 213 (651)
Q Consensus 137 RLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqne---k~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLe 213 (651)
||.......+.-+-.+-+..+.|..-+.+++..+.++.+-++.+ ++-.++++.-+..++......-..-.-++.+-.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444343455666666677777777777777666666 344444444444433333322222222333333
Q ss_pred HhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820 214 QKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 214 eKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~ 293 (651)
-=...|+.||+.-.-|..+.+.--..+.+|++ +-..++.---.| ..|=....+++.++.--...+....-+|+-
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~----~~~~Lq~Ql~~~--e~l~~~~da~l~e~t~~i~eL~~~ieEy~~ 172 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELAT----EKATLQRQLCEF--ESLICQRDAILSERTQQIEELKKTIEEYRS 172 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH----hhHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445566666666666666665555555544 333333332222 233344445555554444444444455654
Q ss_pred hhhchhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820 294 LKLSSENETASNAKRLREKKEELHQLKEKLE 324 (651)
Q Consensus 294 lk~ssE~~aa~da~lL~eke~~l~qLeekl~ 324 (651)
+. .+-.-++..|+++|+
T Consensus 173 ~t--------------eeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 173 IT--------------EELRLEKSRLEEQLS 189 (193)
T ss_pred HH--------------HHHHHHHHHHHHHHH
Confidence 32 233445666777765
No 207
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.92 E-value=3.2e+02 Score=32.13 Aligned_cols=255 Identities=21% Similarity=0.356 Sum_probs=129.2
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLS 244 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~ 244 (651)
.-...+.++.++|+.+...++.+...+..+...+.+....+...+.+..+.-..+. +++|+-.| +.|.+.+|..|.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~l---L~d~e~ni~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVEL---LPDAEENIAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---hcCcHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555444433333 33333322 567777777777
Q ss_pred hhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 036820 245 SSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLE 324 (651)
Q Consensus 245 SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~ 324 (651)
.-+-..+.-+.+|..-|..- =..|..+|..|+..-..+. .+. ..+=++++.+.++..
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~-------------------R~pL~~e~r~lk~~~~~~~---~e~-~~~~~~ik~~r~~~k 457 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKH-------------------RAPLIEEYRRLKEKASNRE---SES-KQKLQEIKELREEIK 457 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HhHHHHHHHHHHHHHhhcc---hHH-HHHHHHHHHHHHHHH
Confidence 77666666666665554432 1123333433332211111 111 123344455555555
Q ss_pred HHHhHhhhchhHHHhhhhhHHH----------HHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 325 LTLDEACENRATIAKFTQEKDD----------LRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 325 ~Al~e~~k~~~~Ia~L~~e~~~----------~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
....+.......+..|..+++. ++++++. +.|+++=+. ++.+=|..-|.+..
T Consensus 458 ~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEI-v~NI~KQk~-----------------eI~KIl~DTr~lQk 519 (594)
T PF05667_consen 458 EIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEI-VKNIRKQKE-----------------EIEKILSDTRELQK 519 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHhHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 5555554444444444444443 3344433 233333222 33333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
++..--.+|.-=|+.+-+.+-+. || -|| ++| ..-|-=-.||.--.+|+.+++.......|..|-=.++
T Consensus 520 eiN~l~gkL~RtF~v~dElifrd---AK------kDe--~~r-kaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI 587 (594)
T PF05667_consen 520 EINSLTGKLDRTFTVTDELIFRD---AK------KDE--AAR-KAYKLLASLHENCSQLIETVEETGTISREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH---hh------cCH--HHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55455555555666666665543 22 222 111 1223334577777888888888888888888876666
Q ss_pred Hh
Q 036820 475 EA 476 (651)
Q Consensus 475 E~ 476 (651)
+.
T Consensus 588 ~~ 589 (594)
T PF05667_consen 588 DT 589 (594)
T ss_pred HH
Confidence 54
No 208
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.62 E-value=1.1e+02 Score=32.35 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=65.5
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~ 344 (651)
-++.+|..+-..-.+++.++...+.++..+.. +..+..-...+.+-+.++.+++-+|..+..-...|+-.+..+..++
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~--~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i 251 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDP--KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARI 251 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Confidence 44555555555555555555555555555533 3344455667888888899999998877766777788899999999
Q ss_pred HHHHHHHHHhhhhhh
Q 036820 345 DDLRKMLDNELGNVK 359 (651)
Q Consensus 345 ~~~r~mLd~E~~~~k 359 (651)
+.+++.++.|...+-
T Consensus 252 ~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 252 KSLRKQIDEQRNQLS 266 (362)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988876654
No 209
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.40 E-value=3.7e+02 Score=32.64 Aligned_cols=52 Identities=35% Similarity=0.459 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhh
Q 036820 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKAN 541 (651)
Q Consensus 490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~an 541 (651)
.|++.-..|+.-+..--++...++.+|..|-+|+-+-..+|..|..+|..--
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ 569 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQ 569 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666788889999999999999999999999999987654
No 210
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.25 E-value=1.4e+02 Score=27.82 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=42.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHhcchHHHHhhhhhhhhhH
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFA--EVKHTLGNSLDEAKRSGEVLAGEL 432 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~--e~ke~l~~~l~eak~~~~~Ls~El 432 (651)
+..|...|+++..+-.++..+...+.++..+.-.+..-|+ -....|+..+.+++..|+.++...
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~f 119 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEF 119 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777666655554 355667777777777777766554
No 211
>PRK12705 hypothetical protein; Provisional
Probab=60.59 E-value=3.1e+02 Score=31.80 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=14.3
Q ss_pred HhhhhhhhhhHhhhhhHH--HHhh
Q 036820 581 RLGQERKSLDKRSKKLEE--ELAS 602 (651)
Q Consensus 581 ~Lg~ERE~~e~r~kkLEe--ELAs 602 (651)
|-|..|++++.-.+.|++ .++.
T Consensus 418 RpGar~~s~e~yv~rL~~le~i~~ 441 (508)
T PRK12705 418 RPGARRESLDEYVQRLEELEQIAE 441 (508)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhh
Confidence 678888777766666653 4443
No 212
>PHA02047 phage lambda Rz1-like protein
Probab=59.71 E-value=68 Score=30.00 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=35.9
Q ss_pred hHHHHHhhhhhhhH--hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 036820 94 VLGALYALTQNEKK--ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKS 151 (651)
Q Consensus 94 vlg~Ly~l~q~ekk--a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk 151 (651)
++||+||..+-=+- +...|++...+.|. .-+.++...|..|+++-.+
T Consensus 15 ~~g~~y~~~~~~r~~g~~h~~a~~la~qLE-----------~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 15 ALGASYGFVQSYRALGIAHEEAKRQTARLE-----------ALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 57999998875554 56788888888885 3456788888888888844
No 213
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=57.87 E-value=3.8e+02 Score=31.65 Aligned_cols=269 Identities=20% Similarity=0.287 Sum_probs=152.6
Q ss_pred hhhhhhhhhHHHhhhhHhhhhhh-hhhhh--------------------------hhhhHhc-ccchHHHHHHHHHHHHH
Q 036820 242 KLSSSLQQKETELKNLNSVYKQN-ELNAR--------------------------ASSLLVE-RDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 242 ~l~SsLa~KE~e~~nL~~~y~qt-~Ln~~--------------------------v~sL~~e-k~~~~~k~~~l~key~~ 293 (651)
.+.+.+..-|.++.|+..-++|- .||+. |-+|+.+ ..+.=.++..|.--|.+
T Consensus 161 ~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~ 240 (570)
T COG4477 161 QYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRD 240 (570)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 46677788888888888888887 44443 3333322 12233334444444444
Q ss_pred hhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHh-----HhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhh
Q 036820 294 LKLSSENETASNAKRLREKKEELHQLKEKLELTLD-----EACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQIT 368 (651)
Q Consensus 294 lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~-----e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~T 368 (651)
++. +..+..= ..-|.+++.|.++|..-.. |-..-.+.|.-+..+.+.+=..|+.|+++.+.....+-.+
T Consensus 241 m~~-----~gY~l~~-~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 241 MKE-----EGYHLEH-VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHH-----ccCCccc-ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 432 2222222 3456677777777763221 1223356788888999999999999999999998888888
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHH---hcchHHHHhhhhhhhhhHHhHHHHHHHh
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETE---ISRIRAEFAEVKHTL---GNSLDEAKRSGEVLAGELFAAKEVLKKA 442 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~q---iskl~~E~~e~ke~l---~~~l~eak~~~~~Ls~El~s~ke~l~k~ 442 (651)
-+.|...+..--.|-++.+.++..----+++ +-+++.++.+....+ ..+++.-+.-=-.|.+.|..+...|.-.
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i 394 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI 394 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887777554322222 234444444444333 3334333333344555566665555555
Q ss_pred HHHHHhhhHHHHHH----HHhhhhhhHHHHHHHHHhHhhHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHH
Q 036820 443 SEELQNVSHELEAT----AENRDSLRKELVNIYKKAEATANDLKEQKE----------IVSSLNKELQALEKQTSKDKEA 508 (651)
Q Consensus 443 ~eeL~~~S~eL~~~----~e~rd~L~kEL~d~YKK~E~t~~eL~~ekk----------iv~tLn~eL~al~~Q~~~d~Ea 508 (651)
+.+-...+..|.+. .++|++ ++.|++-=++..-+++=++ ...+-...++++.+|+..-+=-
T Consensus 395 ~~~q~~~~e~L~~LrkdEl~Are~-----l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pin 469 (570)
T COG4477 395 EDEQEKVQEHLTSLRKDELEAREN-----LERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPIN 469 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCc
Confidence 44444444444433 122222 2333333333333332222 2345566788888887665555
Q ss_pred hHhHHHhHHHHhh
Q 036820 509 RKSLETDLEEATK 521 (651)
Q Consensus 509 Rk~Le~dLeeaT~ 521 (651)
-+++-++++.||.
T Consensus 470 m~~v~~~v~~a~~ 482 (570)
T COG4477 470 MEAVSALVDIATE 482 (570)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666777664
No 214
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=57.67 E-value=2.4e+02 Score=29.24 Aligned_cols=60 Identities=28% Similarity=0.369 Sum_probs=51.5
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhh
Q 036820 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNL 257 (651)
Q Consensus 198 LsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL 257 (651)
|+-.......++.++.-|...|=.|-.-++-+...++.++..+..+..++..|..++.-.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~c 71 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVC 71 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHh
Confidence 444555666888999999999999999999999999999999999999999999887643
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.48 E-value=2.4e+02 Score=32.63 Aligned_cols=54 Identities=33% Similarity=0.475 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 176 ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 176 eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
+|.|-+...+.+-.++..+.+...+++..++.+++.+.+ +|.|++-+..++++-
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q-------~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ-------LQTKLKKCQKELKEE 401 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666665543 566666666655543
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.66 E-value=2.2e+02 Score=28.18 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHH----HHHH-HHhhhhHHhhhhhhhhhhhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTL----EEER-KQKLDRIEGLQDKINLLSLEL 233 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~A----e~eL-eeKl~~i~~Lq~kinLLs~e~ 233 (651)
|--.+.++...|..+...+..+-.....+..++..+...+..|+..-..+ +.+| ++=|..+..+++.+.-|...+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~ 107 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQL 107 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444433333 1111 222333334444444444544
Q ss_pred hhhhhhhhhhhhhhhhhHHHhhhh
Q 036820 234 REKDDGVQKLSSSLQQKETELKNL 257 (651)
Q Consensus 234 ~~Ke~~i~~l~SsLa~KE~e~~nL 257 (651)
..-...+..|...+..-+..|..+
T Consensus 108 ~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 108 DQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 217
>PRK14139 heat shock protein GrpE; Provisional
Probab=55.63 E-value=1.8e+02 Score=29.47 Aligned_cols=94 Identities=26% Similarity=0.370 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~ 455 (651)
+++..|..++........+|..+.-++++||.-.+..+.+..++++.-+ +.+..+|.-+-+-|..+-. ..+..+..
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~---~~~~~~~~ 108 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALA---DESGDLEK 108 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh---cccchHHH
Confidence 3444555566666666666777778899999999999999988887654 5677778888887777642 22233333
Q ss_pred HHHhhhhhhHHHHHHHHH
Q 036820 456 TAENRDSLRKELVNIYKK 473 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK 473 (651)
+.+--+-..+.|.+++++
T Consensus 109 l~~Gv~mi~k~l~~vL~k 126 (185)
T PRK14139 109 LREGVELTLKQLTSAFEK 126 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444555555544
No 218
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.60 E-value=4.4e+02 Score=31.73 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=126.7
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhh--
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQ-- 342 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~-- 342 (651)
-+.++|+.|.+--.-+++.-+-|-+-...+.+.+-.-++..|- ..++..+++++.--++..+=..|.-.+.+
T Consensus 336 ~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~------~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~ 409 (852)
T KOG4787|consen 336 LAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAH------SKAGEFKLTPEMEKDMSKMIVTISELERKNL 409 (852)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH------HHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Confidence 3445566666655555555566666666666655444443332 56677777777777776665555554433
Q ss_pred hHHHHHHHHHHhhhhhhhhHH-------HHHhhHHHHHhhhhh--------hhHHHHHHHHHHhhhhHHHHHHHHHHH--
Q 036820 343 EKDDLRKMLDNELGNVKNLKY-------ELQITQETLETTRNE--------ASDLEKQLKQSKDSCADLETEISRIRA-- 405 (651)
Q Consensus 343 e~~~~r~mLd~E~~~~k~L~~-------~lq~Tqe~L~~sR~e--------~s~L~~~L~~~~~~~~~L~~qiskl~~-- 405 (651)
++-.+++-|..-+.---++-. +|-.-|...-.-|+- +-.|..+|+++..-|.-|.-.+-|+.-
T Consensus 410 ~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q 489 (852)
T KOG4787|consen 410 ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQ 489 (852)
T ss_pred cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHH
Confidence 334556666554433333322 222223222223332 234788999999999988888877754
Q ss_pred ----HHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHH
Q 036820 406 ----EFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV 468 (651)
Q Consensus 406 ----E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~ 468 (651)
+|+-+-.-+-+.|++-..+|+-|+--|.+--|.+.+.-.+++-+-..|..++-.--.|-|+.+
T Consensus 490 ~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~L 556 (852)
T KOG4787|consen 490 VRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQFL 556 (852)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555667788899999999999999999999999999998888888777665544544443
No 219
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.48 E-value=3.1e+02 Score=30.27 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=9.4
Q ss_pred CCCCcccchhhhhhe
Q 036820 55 DPKDNIFTRRKTILL 69 (651)
Q Consensus 55 ~~~~~~~~~rr~iL~ 69 (651)
+.+|+|-+-...||.
T Consensus 64 ~e~DDPn~~~~~Il~ 78 (359)
T PF10498_consen 64 QEYDDPNATISNILD 78 (359)
T ss_pred cccCCHHHHHHHHHH
Confidence 344777766666664
No 220
>PF15294 Leu_zip: Leucine zipper
Probab=55.45 E-value=3e+02 Score=29.75 Aligned_cols=126 Identities=26% Similarity=0.382 Sum_probs=78.4
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADL---------ETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA 429 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L---------~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls 429 (651)
.+||+-++.-+.--...=.|-++|..+|.+.+..-.+. ..+++.|..-++-++--|...+..-....+.|-
T Consensus 142 ~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~ 221 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALE 221 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666666677777777777777722111 224455555555555555555666666677777
Q ss_pred hhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036820 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT 502 (651)
Q Consensus 430 ~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~ 502 (651)
+.|.+.|--|-+.|+.|.....+|.. |+-- +.-...=|.|+++=|-++.+|.+.+
T Consensus 222 e~L~~~KhelL~~QeqL~~aekeLek-----------------Kfqq-T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 222 ETLQSCKHELLRVQEQLSLAEKELEK-----------------KFQQ-TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHhcchhhhcchhhHHH-----------------HhCc-cHHHHHhHHHHHhccHHHHHHHHHh
Confidence 77777776666667766666665543 3322 2223344778888888888777654
No 221
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.38 E-value=60 Score=33.25 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=56.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHH-HHhHHHhhhhhHHHHHHHHHHhhhhHHhhh-------hhhhhhhhhhhhhhhhhhhhh
Q 036820 173 LGKELQNEKRFIEELRIEIDS-LQTSLLKFGEDKRTLEEERKQKLDRIEGLQ-------DKINLLSLELREKDDGVQKLS 244 (651)
Q Consensus 173 L~keLqnek~tVEdlk~eIeq-l~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq-------~kinLLs~e~~~Ke~~i~~l~ 244 (651)
|..+|+..+..+..+..++.. ....-.++.-++..++.-|+=|...+.-+. .-+.-+..+|+.-|+.|.-|.
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le 180 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLE 180 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 222223445556677777777777776664 234456778999999999999
Q ss_pred hhhhhhHHHhhhhH
Q 036820 245 SSLQQKETELKNLN 258 (651)
Q Consensus 245 SsLa~KE~e~~nL~ 258 (651)
+-|+.|..+++.|+
T Consensus 181 ~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 181 SHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999885
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.36 E-value=2.4e+02 Score=28.69 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=57.8
Q ss_pred hhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 036820 430 GELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEAR 509 (651)
Q Consensus 430 ~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaR 509 (651)
+-+..+.+..+++...=..+........+.++.|..|+-.+=+.++........-.+.+.+++.++..|+.|+-.-...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444444455555555555444455555555555556677777777777777777777777
Q ss_pred HhHHHhHHHHhhhHHHh
Q 036820 510 KSLETDLEEATKSLDEM 526 (651)
Q Consensus 510 k~Le~dLeeaT~SldEm 526 (651)
+.|.-=+......|+..
T Consensus 101 ~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 101 QELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666666666653
No 223
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.20 E-value=2.5e+02 Score=28.66 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhh
Q 036820 314 EELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSC 393 (651)
Q Consensus 314 ~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~ 393 (651)
+.+...-..|...|.+..++ |..+..+....|+.+.++.......-+-+|.+-.++.++|...-..-.+++.++.-+
T Consensus 70 e~~a~~H~~l~~~L~~~~~~---l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~ 146 (261)
T cd07648 70 EKLSELHLQLVQKLQELIKD---VQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRREN 146 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44455556677777653322 333334444555555555555545555577777777888877766666666654332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcchH
Q 036820 394 ADLETEISRIRAEFAEVKHTLGNSLD 419 (651)
Q Consensus 394 ~~L~~qiskl~~E~~e~ke~l~~~l~ 419 (651)
. -..++.|+..-...+++-++..|+
T Consensus 147 ~-s~k~~eK~~~K~~ka~~~Y~~~v~ 171 (261)
T cd07648 147 A-SPKEIEKAEAKLKKAQDEYKALVE 171 (261)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123334444444444443333333
No 224
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.95 E-value=2.5e+02 Score=28.64 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=53.1
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHH
Q 036820 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIE 220 (651)
Q Consensus 152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~ 220 (651)
+.+..+.|...+..++..+..+..........+.....++..+...+.........+..-+..-++.++
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888888888888888888877777777776665554443
No 225
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.27 E-value=1.1e+02 Score=36.31 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
-.....+..+..+|..+..+-+..+..+++.+..|+.+++.+..+..-.+ .+... =-.|..++.+|+.|..++.++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~---~~~~~-~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR---DKVRK-DREIRARDRRIERLEKELEEK 493 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777764433222 11111 124677788888888888888
Q ss_pred hhhhhhhhhhhhhh
Q 036820 237 DDGVQKLSSSLQQK 250 (651)
Q Consensus 237 e~~i~~l~SsLa~K 250 (651)
...|..|--.|..-
T Consensus 494 ~~~ve~L~~~l~~l 507 (652)
T COG2433 494 KKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776655543
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.19 E-value=1.4e+02 Score=31.10 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 343 EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 343 e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
+++.++..|-.|++.+++-..-|+-+.........|-....++|.+.+.=-..|+..|....+|-+..++..
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554444444445555555555555444445555555555544444433
No 227
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=52.84 E-value=2.4e+02 Score=27.74 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=27.8
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHH-HHHHHHHHHHHHHHHHH
Q 036820 100 ALTQNEKKATDATLEYMKARLKEKEAAIVSLEK-DFESKLQNEQEQRTKQL 149 (651)
Q Consensus 100 ~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDe-dFEkRLKevQeeVkkLL 149 (651)
|+++.|.+-.+.++...+.++..-+.++...+. .-..++-..+.-..+..
T Consensus 64 gls~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~ 114 (199)
T PF10112_consen 64 GLSDREYEYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIF 114 (199)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777776666655443 22334444444444444
No 228
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.84 E-value=5.5e+02 Score=31.98 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhH
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDK 205 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedk 205 (651)
+-+++|.+.-...+--+.....+..--.+.++.+++++...|-+.+-++
T Consensus 419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 4444444444444444444444444444444444444444444443333
No 229
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=52.73 E-value=2e+02 Score=30.41 Aligned_cols=105 Identities=25% Similarity=0.407 Sum_probs=69.7
Q ss_pred hHHHHHHHhHHHHHhhhHHHHHHHHhhhh---hhH-HHHHHHHHhHhhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhH
Q 036820 434 AAKEVLKKASEELQNVSHELEATAENRDS---LRK-ELVNIYKKAEATANDLKEQKEIVS---SLNKELQALEKQTSKDK 506 (651)
Q Consensus 434 s~ke~l~k~~eeL~~~S~eL~~~~e~rd~---L~k-EL~d~YKK~E~t~~eL~~ekkiv~---tLn~eL~al~~Q~~~d~ 506 (651)
++||.|=.+-++|++.+.+|..+..+||. |+. |+|++.|=+-+--+|.+.=-+.+- -...+.+-|++-+-+--
T Consensus 8 StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD 87 (272)
T KOG4552|consen 8 STRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD 87 (272)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH
Confidence 67899999999999999999999999986 444 999999888877776554333322 12233444455554544
Q ss_pred HHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccch
Q 036820 507 EARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLE 548 (651)
Q Consensus 507 EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle 548 (651)
+.-..|+..|-+|- ++|+...=.||.+..+++
T Consensus 88 ~~IQqLqk~LK~aE----------~iLtta~fqA~qKLksi~ 119 (272)
T KOG4552|consen 88 EVIQQLQKNLKSAE----------VILTTACFQANQKLKSIK 119 (272)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 55555666665553 566666666666555443
No 230
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.63 E-value=34 Score=29.92 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=41.8
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhh
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKI 226 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~ki 226 (651)
.++-..+.++..+|++++..|..+-. ..-++..++..|..++..+.-|-+.+.-+.++|
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566777777777777665443 667778888888888888888888777776654
No 231
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.50 E-value=3.4e+02 Score=29.54 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=56.9
Q ss_pred HhhHHHHH----hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHH
Q 036820 366 QITQETLE----TTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKE 437 (651)
Q Consensus 366 q~Tqe~L~----~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke 437 (651)
+.+++-|. -||.=-..|+.||+++.--|.||++.+-+++.|..-.|+.+...--+.-++-..|-++|.-+++
T Consensus 30 ~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 30 LQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 3566667889999999999999999999999999999998887777777777777777766544
No 232
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=52.23 E-value=1.3e+02 Score=29.78 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=66.1
Q ss_pred HHHHHHHHHHH-----HHhHHHhHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 139 QNEQEQRTKQL-----KSAKEEQQLLMNKLNSANTTISGLGK--ELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 139 KevQeeVkkLL-----Kk~kEeeQSLlDQLnSLnsTLtSL~k--eLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
.+.+.+|+|-+ -+||+...-+.-|+..++.-+.++.+ +...+++.+..++..|..-..-+. .+..=
T Consensus 11 ~~lea~VnKr~aVSl~DRFG~~~~LF~~Qf~~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~-------~L~~~ 83 (146)
T PF05852_consen 11 SALEAEVNKRAAVSLFDRFGKSSSLFRAQFQFTKKSLRSHNSLREECEIKNKVSSLETEISEKKKELS-------HLKKF 83 (146)
T ss_pred HHHHHHHHHhhhhhHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhc
Confidence 34456677666 55899999999999999999887764 456667777777776666665555 22222
Q ss_pred HHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 212 RKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 212 LeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
=.-|++.++.|+|+|.-|..+|.+-
T Consensus 84 d~~kv~~~E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 84 DRKKVEDLEKLTDRVEELKEELEFE 108 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999999999998888654
No 233
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.22 E-value=4.2e+02 Score=30.43 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 036820 112 TLEYMKARLKEKEAAIVSLEKDF-----ESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEE 186 (651)
Q Consensus 112 tiesm~~kL~e~Eaa~~~lDedF-----EkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEd 186 (651)
....|...+..++.++..+...+ +..|...+..++.+... -+..+..++..-+.++..+..+|...
T Consensus 277 L~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~ld~~~~r---L~~~l~~~~~~~~~~~~~l~~rl~~~------ 347 (440)
T COG1570 277 LHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIR---LRRALENQLALKKQRLERLTQRLNPQ------ 347 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34455556666666666555544 34444444444444422 34566666666666666666666555
Q ss_pred HHHHHHHHHhHHHhhhhhHH-HHHHHHHHhhhhHHhhhhhhhhhhh
Q 036820 187 LRIEIDSLQTSLLKFGEDKR-TLEEERKQKLDRIEGLQDKINLLSL 231 (651)
Q Consensus 187 lk~eIeql~ssLsqAEedkd-~Ae~eLeeKl~~i~~Lq~kinLLs~ 231 (651)
|.+.+.++.+.+.... .+...|+.+-..++.|..+++.|+=
T Consensus 348 ----~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~l~~~L~~Lsp 389 (440)
T COG1570 348 ----IQRQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLSP 389 (440)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 5555555554444433 4677788888888888888777763
No 234
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=52.17 E-value=24 Score=31.35 Aligned_cols=74 Identities=28% Similarity=0.480 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhH----HHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHH
Q 036820 488 VSSLNKELQALEKQTSKDKEARKSLETDLEEATKSL----DEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQ 561 (651)
Q Consensus 488 v~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~Sl----dEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eq 561 (651)
-..|..|+..|.+|+..+...|.+|+.-|.-...++ .-+..++-.|=.++..+-.-|..||..---|+..|-+|
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999887776 34556777788888888888888877777777766655
No 235
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.73 E-value=5.6e+02 Score=31.76 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=11.1
Q ss_pred chhhHHHHHhhhhhhhHhHH
Q 036820 91 RSGVLGALYALTQNEKKATD 110 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~ 110 (651)
+-|=|..|.-....|++.+=
T Consensus 154 ~QG~f~~fl~a~~~eR~~il 173 (1047)
T PRK10246 154 SQGQFAAFLNAKPKERAELL 173 (1047)
T ss_pred ccccHHHHHhCChHHHHHHH
Confidence 45555556555555555543
No 236
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.27 E-value=1.6e+02 Score=25.46 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 036820 136 SKLQNEQEQRTKQ 148 (651)
Q Consensus 136 kRLKevQeeVkkL 148 (651)
+.|.+--+.|.-|
T Consensus 5 ~~l~EKDe~Ia~L 17 (74)
T PF12329_consen 5 KKLAEKDEQIAQL 17 (74)
T ss_pred HHHHhHHHHHHHH
Confidence 3333333333333
No 237
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.90 E-value=3.8e+02 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=16.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036820 474 AEATANDLKEQKEIVSSLNKELQALEKQT 502 (651)
Q Consensus 474 ~E~t~~eL~~ekkiv~tLn~eL~al~~Q~ 502 (651)
+..-+++|..||.++..|++.++..-.++
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33345566666666666666665554444
No 238
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.36 E-value=3.6e+02 Score=29.42 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=25.7
Q ss_pred HhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820 214 QKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN 264 (651)
Q Consensus 214 eKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt 264 (651)
+.|-.+..||.-..=.++-+..-+.....+.+.|..-+.=+..++.-+.++
T Consensus 319 ~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N 369 (388)
T PF04912_consen 319 ERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKEN 369 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555454444444433
No 239
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.12 E-value=3.7e+02 Score=29.26 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.0
Q ss_pred HHHHhhhhhhhHhHHHHHHHH
Q 036820 96 GALYALTQNEKKATDATLEYM 116 (651)
Q Consensus 96 g~Ly~l~q~ekka~~~tiesm 116 (651)
||+|++.|+=..|-++.|++-
T Consensus 34 gA~Y~~yQ~~EQAr~~A~~fA 54 (301)
T PF06120_consen 34 GAWYYFYQNAEQARQEAIEFA 54 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999888888776543
No 240
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=49.53 E-value=2.5e+02 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhHHhhhhhhh
Q 036820 207 TLEEERKQKLDRIEGLQDKIN 227 (651)
Q Consensus 207 ~Ae~eLeeKl~~i~~Lq~kin 227 (651)
.....|+..+ |.+++-+|+
T Consensus 82 ~~s~~l~~~~--~~~~e~~i~ 100 (146)
T PF08702_consen 82 QYSKSLRKMI--IYILETKII 100 (146)
T ss_dssp HHHHHHHHHH--CHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHh
Confidence 3344444444 444444443
No 241
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.14 E-value=98 Score=26.70 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh
Q 036820 313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR 376 (651)
Q Consensus 313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR 376 (651)
+.++..|.+.|..|-...+.....+..|+.|++..-.-|..=......|+.++...+.-|...|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777777777777777666666555556666666666555554443
No 242
>PRK10869 recombination and repair protein; Provisional
Probab=49.07 E-value=4.7e+02 Score=30.13 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=116.2
Q ss_pred hhHhhhhhh-hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHH--HHHHHHHHHHhHhhh
Q 036820 256 NLNSVYKQN-ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELH--QLKEKLELTLDEACE 332 (651)
Q Consensus 256 nL~~~y~qt-~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~--qLeekl~~Al~e~~k 332 (651)
.+...|..- .+..++..+.....+..++++-++-++.++....= +..-|-+|..+....-| .+-+.+..|++.-+.
T Consensus 158 ~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l-~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~ 236 (553)
T PRK10869 158 EMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP-QPGEFEQIDEEYKRLANSGQLLTTSQNALQLLAD 236 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444333 56777888888888888999999999998876654 44555555333322211 122222333222211
Q ss_pred -c-hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH--HHH
Q 036820 333 -N-RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRA--EFA 408 (651)
Q Consensus 333 -~-~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~--E~~ 408 (651)
+ ..++..|..-. ..+..+ ...-+.++.+.+.|+++.....++..++....+ +|.
T Consensus 237 ~~~~~~~~~l~~~~--------~~l~~~--------------~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~d 294 (553)
T PRK10869 237 GEEVNILSQLYSAK--------QLLSEL--------------IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLD 294 (553)
T ss_pred CCcccHHHHHHHHH--------HHHHHH--------------hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1 11111111111 111111 222233444444444444444444444444333 111
Q ss_pred H-HHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHH
Q 036820 409 E-VKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEI 487 (651)
Q Consensus 409 e-~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekki 487 (651)
. -=+.++..|..-......-...+..+-+..++.+.+|+. |...-+....|++++-.+++++...+..|-.-|+-
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~----L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQ----LDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112233333444444444444444555555555666543 44455667789999999999999999999988875
Q ss_pred -HHHHHHHHHHHHHHhhhh
Q 036820 488 -VSSLNKELQALEKQTSKD 505 (651)
Q Consensus 488 -v~tLn~eL~al~~Q~~~d 505 (651)
...|.+.+..--+++-+.
T Consensus 371 aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 371 YAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 445666665555555553
No 243
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=48.98 E-value=1e+02 Score=34.42 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHhhhhhhh-hHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchH
Q 036820 349 KMLDNELGNVKN-LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLD 419 (651)
Q Consensus 349 ~mLd~E~~~~k~-L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~ 419 (651)
..|+..++.+|. +..+++.--++|.+-|.....|++|++....+-+ .||..|..|++-+-+.+.|.-.
T Consensus 229 ~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq---~Ei~~LKqeLa~~EEK~~Yqs~ 297 (395)
T PF10267_consen 229 SRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQ---NEIYNLKQELASMEEKMAYQSY 297 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHH
Confidence 345566666665 7778888899999999999999999988776654 6899999999999988887543
No 244
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=48.95 E-value=25 Score=33.09 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhHHH
Q 036820 393 CADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKASEE 445 (651)
Q Consensus 393 ~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ee 445 (651)
..+|..++.++.++|...+..+++..++++.- -+.+..+|..+-+.|..+-.-
T Consensus 27 ~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 27 IEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555577777777777777777766653 356666777777766665543
No 245
>PRK12704 phosphodiesterase; Provisional
Probab=48.79 E-value=4.8e+02 Score=30.10 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 198 LsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
|.+-+..+..-+..|..+...++.++..+.-+.++...+-+.|-.|
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333334444444444444444444444444444444444333
No 246
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.43 E-value=1.1e+02 Score=28.36 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs 199 (651)
..|.|+|..+..+|..+...+..++..+..+-.+...++.-..
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999888888888888877776655
No 247
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.32 E-value=2.5e+02 Score=26.68 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHH
Q 036820 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASE 444 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~e 444 (651)
+..-+-+|+..-.|+.-+..++..+......+..+|.++..+..++ .....++..++.-++..+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~---------------~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL---------------RALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666677777777777766665 3345566667777777777
Q ss_pred HHHhhhHHHHHHHHhhhhhhHHHHHH
Q 036820 445 ELQNVSHELEATAENRDSLRKELVNI 470 (651)
Q Consensus 445 eL~~~S~eL~~~~e~rd~L~kEL~d~ 470 (651)
..+++-.=+..-+|..+.|+--+.|+
T Consensus 83 ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 77777777778888888888777775
No 248
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.10 E-value=5.3e+02 Score=30.44 Aligned_cols=85 Identities=24% Similarity=0.236 Sum_probs=65.2
Q ss_pred chHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH-HHHHHH
Q 036820 417 SLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVS-SLNKEL 495 (651)
Q Consensus 417 ~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~-tLn~eL 495 (651)
.|..-.+.++.-..-+..+-+.+.+.++||+ +|....+....|.+++-.+|.++..++..|-.-|+..+ .|.+.+
T Consensus 305 Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~----~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 305 RLFALKSLARKYGVTIEDLLEYLDKIKEELA----QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777778888889999999986 46667788899999999999999999999999987654 455555
Q ss_pred HHHHHHhhhh
Q 036820 496 QALEKQTSKD 505 (651)
Q Consensus 496 ~al~~Q~~~d 505 (651)
.+--+++.|+
T Consensus 381 ~~eL~~L~Me 390 (557)
T COG0497 381 TAELKALAME 390 (557)
T ss_pred HHHHHhcCCC
Confidence 5554544443
No 249
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=48.06 E-value=1.2e+02 Score=33.70 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=48.5
Q ss_pred HHHhhhh----hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 351 LDNELGN----VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 351 Ld~E~~~----~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
||||=.| |.-||+.|.--++.|..||.+--+++.++...++.|.-|..+...|..++..--+.+
T Consensus 138 LDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeli 205 (405)
T KOG2010|consen 138 LDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELI 205 (405)
T ss_pred hcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555433 567899999999999999999999999999999999877666555555444444443
No 250
>PF14992 TMCO5: TMCO5 family
Probab=47.58 E-value=2.2e+02 Score=30.82 Aligned_cols=54 Identities=31% Similarity=0.476 Sum_probs=32.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820 385 QLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNV 449 (651)
Q Consensus 385 ~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~ 449 (651)
.|.++...|-.++.+|.|+.+....|.+.. +-=+.++-..||.|++..++.+.+
T Consensus 117 ~lqql~~~~~~qE~ei~kve~d~~~v~~l~-----------eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 117 KLQQLLESCASQEKEIAKVEDDYQQVHQLC-----------EDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666555554443 334556666777777777766654
No 251
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.54 E-value=5.8e+02 Score=30.70 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197 (651)
Q Consensus 163 LnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ss 197 (651)
...+...|..+..+|+.-+..=++++.+|..+.++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~ 454 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNN 454 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 33566677777777777777777777776655544
No 252
>PRK14150 heat shock protein GrpE; Provisional
Probab=47.48 E-value=2.8e+02 Score=28.02 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=61.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHhHHHHHhhhHHHHH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKASEELQNVSHELEA 455 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~ 455 (651)
.++..|..++.+... ++.-..-++.+||.-.+....+.+++++.-+ ..++..|-.+-+-|..+-.-.......+.+
T Consensus 41 ~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~ 117 (193)
T PRK14150 41 ARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKA 117 (193)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHH
Confidence 344555666655443 6777888999999999999999998887654 567777887877777765322212233444
Q ss_pred HHHhhhhhhHHHHHHHHHh
Q 036820 456 TAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK~ 474 (651)
..+--+-..+.|.+++++.
T Consensus 118 ~~~Gv~mi~~~l~~~L~~~ 136 (193)
T PRK14150 118 LIEGVELTLKSLLDTVAKF 136 (193)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 4444455556666666553
No 253
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=47.38 E-value=3.2e+02 Score=30.34 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=72.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhh
Q 036820 125 AAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGED 204 (651)
Q Consensus 125 aa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEed 204 (651)
..|-+|..+.+.++.++....++|++-+.-.=.-+--+=..+|++|.++.+.++.+..+..+++..-.++..-++
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~----- 304 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS----- 304 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----
Confidence 357889999999999999999999954422222333444556777777788888777777776666665555544
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhHHHhhhhH
Q 036820 205 KRTLEEERKQKLDRIEGLQDKINLLSLELREKDD------GVQKLSSSLQQKETELKNLN 258 (651)
Q Consensus 205 kd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~------~i~~l~SsLa~KE~e~~nL~ 258 (651)
.--+.|.|=++.|+ ++.||+..+.. .++..--+++.-+.|.+.+|
T Consensus 305 --~rT~~L~eVm~e~E-------~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mn 355 (384)
T KOG0972|consen 305 --SRTETLDEVMDEIE-------QLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMN 355 (384)
T ss_pred --HHHHHHHHHHHHHH-------HHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhh
Confidence 22233444444333 34444444332 23444445555555555554
No 254
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=47.35 E-value=3e+02 Score=27.43 Aligned_cols=161 Identities=17% Similarity=0.280 Sum_probs=91.6
Q ss_pred hhhhHHhhhhhhhhhhhhhhh----hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccc---hHHHHHHH
Q 036820 215 KLDRIEGLQDKINLLSLELRE----KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDD---SKQKLEAV 287 (651)
Q Consensus 215 Kl~~i~~Lq~kinLLs~e~~~----Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~---~~~k~~~l 287 (651)
....|++|+.||--|...+=+ +...-...-. +|. ..|..+++....++. +-+++++|
T Consensus 3 ~~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~----------~L~------~~~~~L~~~~s~re~i~~l~k~~~eL 66 (174)
T PF07426_consen 3 EMSALDILEKRIEELERRVYGENGSKEGQPEKVID----------SLL------SVQSALNSAASKRERIKELFKRIEEL 66 (174)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccccCCchHHHH----------HHH------HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346789999999999888833 2211111111 222 122233333222221 22456666
Q ss_pred HHHHHHhhhchhhh--hhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHh-hhhhhhhHHH
Q 036820 288 QKEYKELKLSSENE--TASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNE-LGNVKNLKYE 364 (651)
Q Consensus 288 ~key~~lk~ssE~~--aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E-~~~~k~L~~~ 364 (651)
.+ |-|-.-.-+.- .+....++--.++.|++ ++.+=+....+...||.| +.+|..+...
T Consensus 67 ~~-YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~------------------~~~~Leki~~L~pvL~se~i~~vp~~~~k 127 (174)
T PF07426_consen 67 NK-YLDPNFIEEIQLPDSAKLQIILAEEDEIKS------------------TAELLEKIKSLEPVLDSESIRNVPELCDK 127 (174)
T ss_pred HH-HcCchhhhhcccchHHHHHHHHHccHHHHH------------------HHHHHHHHHHhhhhcCcHHHhhhHHHHHH
Confidence 55 54433222211 12233444445555554 333445566677777754 5677777777
Q ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 036820 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ 410 (651)
|+.....=-+--.++..|++.....-..+.++...||+---.|.++
T Consensus 128 L~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~lSk~Fv~wD~~ 173 (174)
T PF07426_consen 128 LQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLLSKQFVQWDEI 173 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7776666666667777888888888888888888888887777764
No 255
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=47.34 E-value=3.2e+02 Score=27.72 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=20.2
Q ss_pred CchhhHHHHHhhhhhhhHh--HHHHHHHHHHHhhhhHHHHHhhH-HHHH
Q 036820 90 PRSGVLGALYALTQNEKKA--TDATLEYMKARLKEKEAAIVSLE-KDFE 135 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~ekka--~~~tiesm~~kL~e~Eaa~~~lD-edFE 135 (651)
|.--+.-+|=-.+.+|+.. -+.++..++.+-.+-=..|..+. ++|.
T Consensus 16 ~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~ 64 (204)
T PF10368_consen 16 PEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDND 64 (204)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH
Confidence 4444555555566666632 23444444444444333443332 3444
No 256
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.30 E-value=1.1e+02 Score=28.38 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhh----------------------HHHHhHHHhhhhhccccchhH
Q 036820 493 KELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRN----------------------ALELSKNLEKANSQISNLEDE 550 (651)
Q Consensus 493 ~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~----------------------~~~LS~~Le~ans~issle~e 550 (651)
.+++.+.+++..--..|..|++.+-|+...++|++.- .--|.+++|....+|..|+.-
T Consensus 14 ~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq 93 (121)
T PRK09343 14 AQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQ 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777888888888877777777641 123455666666666666666
Q ss_pred HHHHHHhHHHHHhhh
Q 036820 551 KAVLYKSLTEQKSIA 565 (651)
Q Consensus 551 KevL~ksl~eqk~~t 565 (651)
++.|.+.+.+..+.-
T Consensus 94 ~~~l~~~l~e~q~~l 108 (121)
T PRK09343 94 EKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665544433
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.22 E-value=2.7e+02 Score=33.23 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=36.5
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 036820 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLS 230 (651)
Q Consensus 152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs 230 (651)
+..+.+.|-.-+..++..+..+..+|..++..+.. +. +-+--+..-+.-|..++.+|+++=..|+.|..|++.|-
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~-~~---~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRD-KV---RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544441 11 11112333344455566666666666666666665554
No 258
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.94 E-value=1e+02 Score=32.83 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=58.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820 339 KFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413 (651)
Q Consensus 339 ~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~ 413 (651)
|+..-++++|..|+..+..---|.+++.-.|.-+..-+.+.-.|..++-+...+...|.-++++|..-|.|.-..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 666777888888888877777788888887777888888888888887777777788888888888888776544
No 259
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=46.66 E-value=23 Score=32.47 Aligned_cols=70 Identities=27% Similarity=0.423 Sum_probs=57.4
Q ss_pred hhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccccc
Q 036820 539 KANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSK 618 (651)
Q Consensus 539 ~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~ 618 (651)
.+-+....++.|-|=|+.+|-+ .|+.+|..=-+||..++.+..+|+..|.-+.|.|=.|..|+..-+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFe-------------EAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFE-------------EANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677888888888854 477777777789999999999999999999999999998888877
Q ss_pred Ccc
Q 036820 619 TLV 621 (651)
Q Consensus 619 s~~ 621 (651)
...
T Consensus 79 ~v~ 81 (100)
T PF06428_consen 79 TVM 81 (100)
T ss_dssp HCT
T ss_pred HHH
Confidence 776
No 260
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.60 E-value=2.2e+02 Score=26.07 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=38.7
Q ss_pred hhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHH
Q 036820 92 SGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTIS 171 (651)
Q Consensus 92 sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLt 171 (651)
.|++|++|-+--.-+.|...-|+....++...+ .||..++.++..+ +--+.+..++-.|+
T Consensus 16 ~~~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~-----------~Rl~~lE~~l~~L---------Pt~~dv~~L~l~l~ 75 (106)
T PF10805_consen 16 FGIAGGIFWLWLRRTYAKREDIEKLEERLDEHD-----------RRLQALETKLEHL---------PTRDDVHDLQLELA 75 (106)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhC---------CCHHHHHHHHHHHH
Confidence 344455444432335566666666665555443 3333333333322 11234455555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 036820 172 GLGKELQNEKRFIEELRIEID 192 (651)
Q Consensus 172 SL~keLqnek~tVEdlk~eIe 192 (651)
.+.+.++.....+....+..+
T Consensus 76 el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 76 ELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 555555555555555444443
No 261
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=46.00 E-value=5.1e+02 Score=29.61 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=52.1
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh--hhhhhhhHHHhhhhHh--hhhhhh
Q 036820 190 EIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL--SSSLQQKETELKNLNS--VYKQNE 265 (651)
Q Consensus 190 eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l--~SsLa~KE~e~~nL~~--~y~qt~ 265 (651)
.|.+++..+...+-.+..+...+...=-.|..|+.+|.-|..+|..-...+-.- +.+++.+=.+|+.|.. -|-+..
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~ 366 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKAR 366 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455556666666666665544443211 1245556666776654 344446
Q ss_pred hhhhhhhhHhcccchHHHH
Q 036820 266 LNARASSLLVERDDSKQKL 284 (651)
Q Consensus 266 Ln~~v~sL~~ek~~~~~k~ 284 (651)
+-+-+.+|-.++.++.++.
T Consensus 367 y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 367 WESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 7777888888888887765
No 262
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.73 E-value=2.5e+02 Score=26.03 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 036820 205 KRTLEEERKQK 215 (651)
Q Consensus 205 kd~Ae~eLeeK 215 (651)
++.+..-|+.+
T Consensus 92 ~~eA~~~l~~~ 102 (140)
T PRK03947 92 LDEAIEILDKR 102 (140)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 263
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=45.37 E-value=49 Score=31.01 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=38.2
Q ss_pred HHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhcccccc
Q 036820 567 ESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSK 618 (651)
Q Consensus 567 EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~ 618 (651)
.++.....+...|....+--..+-.-..|.-+||+-||+||=|||..+.+..
T Consensus 11 ~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 11 QAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 3344455555555555555556777788999999999999999999988763
No 264
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.22 E-value=2e+02 Score=24.75 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=38.5
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhH-HHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820 121 KEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTI-SGLGKELQNEKRFIEELRIEIDSLQTS 197 (651)
Q Consensus 121 ~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTL-tSL~keLqnek~tVEdlk~eIeql~ss 197 (651)
..-+..+..+...++.--..+......|.....+....|+++|+...... ..+...+......+..+...++-++..
T Consensus 24 ~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 24 KQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555555556666666777777777777655332 233333333333334443333333333
No 265
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.00 E-value=3.8e+02 Score=27.93 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHH-HHHHHHHHHHhHHHHHHHHHh-HHHHHHH
Q 036820 109 TDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQL-LMNKLNSANTTISGLGKELQN-EKRFIEE 186 (651)
Q Consensus 109 ~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQS-LlDQLnSLnsTLtSL~keLqn-ek~tVEd 186 (651)
++-.+.....-...-+.....|...+..+|...+.....+...+...... ...++......|..+...|.+ +...+..
T Consensus 138 Ae~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~ 217 (319)
T PF02601_consen 138 AELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQR 217 (319)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344445555666777777777777777776444332222 345566666666666666654 4555555
Q ss_pred HHHHHHHHHhHH
Q 036820 187 LRIEIDSLQTSL 198 (651)
Q Consensus 187 lk~eIeql~ssL 198 (651)
.......+..++
T Consensus 218 ~~~~L~~l~~~l 229 (319)
T PF02601_consen 218 KRQRLQNLSNRL 229 (319)
T ss_pred HHHHHHHHHHhh
Confidence 555555554433
No 266
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.96 E-value=2.8e+02 Score=26.34 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=54.9
Q ss_pred hhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 036820 105 EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFI 184 (651)
Q Consensus 105 ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tV 184 (651)
||.++++.=+++.++|+--+..|....-.-+ .|....++ ...-.++|..|-++....+.+|...+..+..-+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~-eL~kqkd~-------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQG-ELAKQKDQ-------LRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-HHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888776666554333222 23222222 233344555555556666666666666666666
Q ss_pred HHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 185 EELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 185 Edlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
++-+..-.+++..+.+++.|+-..+=.|-|
T Consensus 75 e~eK~ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 75 EDEKQAKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 665555568999999999888777665544
No 267
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.82 E-value=1.8e+02 Score=34.74 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=10.6
Q ss_pred cccchhhhhheeeccccchh
Q 036820 59 NIFTRRKTILLVGISVLPLL 78 (651)
Q Consensus 59 ~~~~~rr~iL~vgisVLP~L 78 (651)
+....++.+|-=+ +-.|++
T Consensus 504 sF~~~Ik~lL~r~-~~qPil 522 (717)
T PF10168_consen 504 SFEKHIKSLLQRS-SSQPIL 522 (717)
T ss_pred hHHHHHHHHhcCC-CCCCee
Confidence 3444566666644 444766
No 268
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.79 E-value=6.8e+02 Score=30.77 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=23.4
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLK 121 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~ 121 (651)
|++.++-++--+..-.+.+...++.++.++.
T Consensus 174 g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777777776777777788888888888774
No 269
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.76 E-value=4.6e+02 Score=32.20 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=79.2
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhH
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTI 170 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTL 170 (651)
.+|-|.-+-+--++--+|+-+-=+.| ...|.++--|+..-+..=.+.++.+.++ ++.-++...|.|+.+ ..+
T Consensus 133 rae~lpeveael~qr~~al~~aee~~----~~~eer~~kl~~~~qe~naeL~rarqre-emneeh~~rlsdtvd---Erl 204 (916)
T KOG0249|consen 133 RAETLPEVEAELAQRNAALTKAEEHS----GNIEERTRKLEEQLEELNAELQRARQRE-KMNEEHNKRLSDTVD---ERL 204 (916)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccccccccH---HHH
Confidence 34444444444444444443333332 3445566666665554444444444333 445667778888877 677
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhh
Q 036820 171 SGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQ 223 (651)
Q Consensus 171 tSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq 223 (651)
.--.++.+.+.+-.+.+-.+.+....++..++.+++.+....+.=...++.|.
T Consensus 205 qlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 205 QLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77778888888888888888888889999888888888777665555555554
No 270
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=44.33 E-value=3.4e+02 Score=27.11 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.7
Q ss_pred hhHHHHHh
Q 036820 93 GVLGALYA 100 (651)
Q Consensus 93 Gvlg~Ly~ 100 (651)
|+++|+|.
T Consensus 13 G~~~G~~~ 20 (201)
T PF12072_consen 13 GIGIGYLV 20 (201)
T ss_pred HHHHHHHH
Confidence 44444444
No 271
>PLN02939 transferase, transferring glycosyl groups
Probab=44.03 E-value=7.6e+02 Score=31.11 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=52.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHH----------hhhhhhhhHHH-----HHhhHHHH
Q 036820 308 RLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDN----------ELGNVKNLKYE-----LQITQETL 372 (651)
Q Consensus 308 lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~----------E~~~~k~L~~~-----lq~Tqe~L 372 (651)
+|++-.--|+.==+-|...|+++-.....|.-|.+|+--+..-|.. -+..+..|+++ +...|.-|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (977)
T PLN02939 230 VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLL 309 (977)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 3344333444444556777888888888888888887665554421 12223333322 22233333
Q ss_pred HhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 373 ETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 373 ~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
....|.+.+-.- +-..|++|..+|.+|.+-+.|+.
T Consensus 310 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 344 (977)
T PLN02939 310 DRATNQVEKAAL----VLDQNQDLRDKVDKLEASLKEAN 344 (977)
T ss_pred HHHHHHHHHHHH----HhccchHHHHHHHHHHHHHHHhh
Confidence 333333332222 23457788888887776665543
No 272
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=43.99 E-value=3.3e+02 Score=26.86 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=70.3
Q ss_pred HHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHH---HHHHHHHHHHHHHHH----HhHHHhHHHHHHHHHHHHh
Q 036820 97 ALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFE---SKLQNEQEQRTKQLK----SAKEEQQLLMNKLNSANTT 169 (651)
Q Consensus 97 ~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFE---kRLKevQeeVkkLLK----k~kEeeQSLlDQLnSLnsT 169 (651)
-=|.-++.|-...+.-|-..-..++--+-+..+-..+.. .++++ ++++.+-. ...++.-..-.++..+...
T Consensus 8 rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~d 85 (136)
T PF11570_consen 8 RNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQLKVRRAQKD 85 (136)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHHHHHHHHHHH
Confidence 348889999999999999999999988888766554443 33333 23333220 0122222222677777777
Q ss_pred HHHHHHHHHhHHHHHHHHH-------HHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 170 ISGLGKELQNEKRFIEELR-------IEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk-------~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
|+.-...|........++. ..+.++..+..+.+.-++.++.+|
T Consensus 86 v~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl 135 (136)
T PF11570_consen 86 VQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKL 135 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 7777777777777777766 444455555555555555555444
No 273
>PF14992 TMCO5: TMCO5 family
Probab=43.84 E-value=3.6e+02 Score=29.23 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=83.5
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH---HHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhh
Q 036820 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEEL---RIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINL 228 (651)
Q Consensus 152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdl---k~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinL 228 (651)
.-+..++|+-.++....++.++..++..-+..+++- +.-+..-+..+.+.+.-++.++.+=+----.|..||.|+.-
T Consensus 16 ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 16 LDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 444555555566666666666666555554444333 33333333334333333333332222222234677777652
Q ss_pred -----------hhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhc
Q 036820 229 -----------LSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLS 297 (651)
Q Consensus 229 -----------Ls~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~s 297 (651)
+++-+...+..+|.+..+.+..|.++.++-+.|.|- .-|+.. .++.+. .|.+
T Consensus 96 ~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v------~~l~eD------q~~~i~-klkE---- 158 (280)
T PF14992_consen 96 QETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQV------HQLCED------QANEIK-KLKE---- 158 (280)
T ss_pred ccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH------HHHHHH-HHHH----
Confidence 344444555677777888888888888887777663 333321 222221 2222
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhc
Q 036820 298 SENETASNAKRLREKKEELHQLKEKLELTLDEACEN 333 (651)
Q Consensus 298 sE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~ 333 (651)
...-+-+ +.+.-.|+-+++.+.+..+..
T Consensus 159 -------~L~rmE~-ekE~~lLe~el~k~q~~~s~~ 186 (280)
T PF14992_consen 159 -------KLRRMEE-EKEMLLLEKELSKYQMQDSQS 186 (280)
T ss_pred -------HHHHHHH-HHHHHHHHHHHHHHhchhhch
Confidence 1122233 677778888888888877766
No 274
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.46 E-value=3e+02 Score=29.52 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 036820 318 QLKEKLEL 325 (651)
Q Consensus 318 qLeekl~~ 325 (651)
+|+.++..
T Consensus 13 ~l~~~~~~ 20 (314)
T PF04111_consen 13 QLDKQLEQ 20 (314)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 275
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=43.42 E-value=3.8e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhcchHHHH
Q 036820 401 SRIRAEFAEVKHTLGNSLDEAK 422 (651)
Q Consensus 401 skl~~E~~e~ke~l~~~l~eak 422 (651)
..+...+++....+..-++...
T Consensus 198 ~~l~~~l~~~~~~l~~~v~~l~ 219 (291)
T TIGR00996 198 NRVLDVLADRSDQLDRLLDNLA 219 (291)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444443333333
No 276
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=43.14 E-value=5.7e+02 Score=29.35 Aligned_cols=193 Identities=24% Similarity=0.310 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH--HhhhhhhHHHHHHH
Q 036820 394 ADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATA--ENRDSLRKELVNIY 471 (651)
Q Consensus 394 ~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~--e~rd~L~kEL~d~Y 471 (651)
.+|..-|++|.....+.|..+..-|.+--. -.+.-+.+.+++ .++...+..++..+. +.-+.++..|.|+.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~---df~~~~~~~~~L----~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~ 82 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYS---DFSPSLQSAKDL----IERSKSLAREINDLLQSEIENEIQPQLRDAA 82 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHH----HHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 366777777777777777777665554322 222223333333 333444555553332 23567888999999
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhH-HHhhhhhccccchhH
Q 036820 472 KKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSK-NLEKANSQISNLEDE 550 (651)
Q Consensus 472 KK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~-~Le~ans~issle~e 550 (651)
.++..-..+|..=..+...|. .|..+..++..-.+|.. +.++-.|...|.+|...--.+.. .... -.=+..|..|
T Consensus 83 ~e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~--~~~~~~Aa~~L~~~~~~L~~l~~~~~~~-~~i~~~Lk~e 158 (593)
T PF06248_consen 83 EELQELKRELEENEQLLEVLE-QLQEIDELLEEVEEALK--EGNYLDAADLLEELKSLLDDLKSSKFEE-LKILKLLKDE 158 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCcCcccc-cHHHHHHHHH
Confidence 999988888877666666655 67777777744333333 35677777777776654333211 0000 0112234444
Q ss_pred HHHHHHhHHHHHh------------------------------hhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhH
Q 036820 551 KAVLYKSLTEQKS------------------------------IANESRENMEDAHNLVMRLGQERKSLDKRSKKLE 597 (651)
Q Consensus 551 KevL~ksl~eqk~------------------------------~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLE 597 (651)
-.++...|..+-. ...+.+.++.|.-.-...||.....+.+-++.|=
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll 235 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLL 235 (593)
T ss_pred HHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4444444333321 0234444577777777888888888877776653
No 277
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.97 E-value=4.5e+02 Score=28.58 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=73.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhh-h
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSL-E 232 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~-e 232 (651)
-+-.+|+=|++-+++.|..+...+...+....+-....++.+-.+.......+.++.+|.+.=+.|+- |+ |=|.+. .
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k-hG-lVlv~~~~ 182 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK-HG-LVLVPDAT 182 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC-eeeCCCCC
Confidence 34667778888888888888877777777776666666777777776666666777776655444421 00 111110 0
Q ss_pred hhhhhh---hhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHh
Q 036820 233 LREKDD---GVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKEL 294 (651)
Q Consensus 233 ~~~Ke~---~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~l 294 (651)
.-|-.+ .+-.-...+-+.| ..+-|-+. .+..|-.|+.-|..++.+...+|-.+.-+-.+.
T Consensus 183 ngd~~~~~~~~~~~~~~~vs~e-~a~~L~~a-G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 183 NGDTSDEPNNVGHPKRALVSQE-AAQLLESA-GDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred CCccccCccccCCCcccccchh-hhhhhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000011111111 11122222 444777888888888877766666665555443
No 278
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=42.85 E-value=3.7e+02 Score=30.68 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHh-HHH-----------------------hh-----------hh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQT-SLL-----------------------KF-----------GE 203 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~s-sLs-----------------------qA-----------Ee 203 (651)
-++.|-..++.|+.+.++.+.+++.++++-..=+.... =++ .+ ++
T Consensus 218 nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d 297 (414)
T KOG2662|consen 218 NLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED 297 (414)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence 38889999999999999999999999987654433321 122 22 68
Q ss_pred hHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhh
Q 036820 204 DKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQ 241 (651)
Q Consensus 204 dkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~ 241 (651)
+.+.++=-|+-=+-.||....|+.-|...|+|-|+-|-
T Consensus 298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIIN 335 (414)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88888888888899999999999999999999998774
No 279
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=42.72 E-value=1.4e+02 Score=26.21 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=51.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHH
Q 036820 338 AKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETE 399 (651)
Q Consensus 338 a~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~q 399 (651)
.|.|..+..++.|+..|++.-..--+.|...-++|....++.....--|..++.+-+.|+.+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERR 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999998877777777777888888888888888888888887777654
No 280
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=42.52 E-value=2.7e+02 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=11.5
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhh
Q 036820 335 ATIAKFTQEKDDLRKMLDNELGN 357 (651)
Q Consensus 335 ~~Ia~L~~e~~~~r~mLd~E~~~ 357 (651)
.+...|....+.+...|..++.+
T Consensus 27 ~~~~~l~~~~~~~~~~l~~~~~~ 49 (202)
T PF01442_consen 27 EIADRLAEEIEALSERLESELEE 49 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444443
No 281
>PRK14148 heat shock protein GrpE; Provisional
Probab=42.47 E-value=3.5e+02 Score=27.66 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=55.1
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhHH
Q 036820 376 RNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKASE 444 (651)
Q Consensus 376 R~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~e 444 (651)
..++..|..++...+..+.+|....-++++||.-.+....+..++++.- .+.++.+|.-+-+-|..+-+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~ 108 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALK 108 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 4556667777777888888888889999999999999999999888654 46778888888887777643
No 282
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=42.42 E-value=11 Score=39.92 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=6.9
Q ss_pred ccccccccC
Q 036820 5 MGSSSFKQP 13 (651)
Q Consensus 5 mg~s~~l~~ 13 (651)
.+++||+|.
T Consensus 2 a~~~~~~~~ 10 (260)
T PLN00042 2 ASTACFLHQ 10 (260)
T ss_pred cchhhhhhc
Confidence 578999943
No 283
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=42.19 E-value=6.3e+02 Score=29.60 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH-------hhhhhHHHHHHHHHHhhhhHHhhhhhhh
Q 036820 155 EQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL-------KFGEDKRTLEEERKQKLDRIEGLQDKIN 227 (651)
Q Consensus 155 eeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs-------qAEedkd~Ae~eLeeKl~~i~~Lq~kin 227 (651)
.++.|+|-++.++.-|..+...--++-=--.+++.....++.-++ ..+..++.++-+|+-==..--.||++--
T Consensus 356 kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 356 KQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 367899999999999888877655543333444444444444433 3344444444444433333345666643
Q ss_pred hhhhhhhhhhhhh---hhhhhhhhhhHHHhhhhHhhhhhhh--hhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820 228 LLSLELREKDDGV---QKLSSSLQQKETELKNLNSVYKQNE--LNARASSLLVERDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 228 LLs~e~~~Ke~~i---~~l~SsLa~KE~e~~nL~~~y~qt~--Ln~~v~sL~~ek~~~~~k~~~l~key~~ 293 (651)
.++..|-+.| -++...|+.||.++.-|...-...+ .-+-+.-|--||.--++++=.|+.+|--
T Consensus 436 ---~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 436 ---TEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred ---HHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 4788999999999998876655543 1233455566777777777788877753
No 284
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=42.09 E-value=1.5e+02 Score=22.54 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 163 LNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 163 LnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
|..+...|..+......+...+.+=+..++....++..+...++.+...|
T Consensus 8 l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 8 LEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444445555555555554444444443
No 285
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.04 E-value=3.9e+02 Score=27.22 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=20.3
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 036820 120 LKEKEAAIVSLEKDFESKLQNEQEQRTKQL 149 (651)
Q Consensus 120 L~e~Eaa~~~lDedFEkRLKevQeeVkkLL 149 (651)
-+.+..+.-.|...|+..+...+..+...+
T Consensus 54 ~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 54 VKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777666665
No 286
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=41.82 E-value=4e+02 Score=27.28 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH-hhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhh
Q 036820 382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAK-RSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENR 460 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak-~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~r 460 (651)
|..-.+...++|.+|. .+-.|=+++-+.+-++|-.-- .....+.++.-+++........+ ...+..-|
T Consensus 10 l~~~~~~G~~~ckel~----~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e-------~e~~a~~H 78 (239)
T cd07658 10 LRRYVKQGGDFCKELA----TVLQERAELELNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEE-------MESEADIH 78 (239)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH-------HHHHHHHH
Confidence 3344455555665543 333344444444444443321 11112223335555555444443 34444555
Q ss_pred hhhhHHHH-HHHHHhHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHh
Q 036820 461 DSLRKELV-NIYKKAEATANDLKEQKEIVS-SLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLE 538 (651)
Q Consensus 461 d~L~kEL~-d~YKK~E~t~~eL~~ekkiv~-tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le 538 (651)
..+-.-|. |+++.+..-..++..+||.+. ...+-.+.+.......-.+++.++.---|+-+..+-++.|-..-+...-
T Consensus 79 ~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~ 158 (239)
T cd07658 79 RNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKM 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 55555565 688889888889988866443 4444444444444444457777776666655555655444333332211
Q ss_pred hhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhh
Q 036820 539 KANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSK 594 (651)
Q Consensus 539 ~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~k 594 (651)
-.+...++.--.|+ +.|.-.--+++...++.+=.+..+.|..|..=|+..+..-+
T Consensus 159 ~~~~~k~~~~~~k~-~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~ 213 (239)
T cd07658 159 LNKLKKSAEVQDKE-DEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALR 213 (239)
T ss_pred Hhhhccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222343 55555556667777777778888999988887777765443
No 287
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=41.71 E-value=1.1e+02 Score=30.48 Aligned_cols=59 Identities=29% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHhcchHHHHhhhhhhhhhHHhHHHHHH----HhHHHHHhhhHHHHHHHHhhhhhhHHHHHH
Q 036820 412 HTLGNSLDEAKRSGEVLAGELFAAKEVLK----KASEELQNVSHELEATAENRDSLRKELVNI 470 (651)
Q Consensus 412 e~l~~~l~eak~~~~~Ls~El~s~ke~l~----k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~ 470 (651)
..|+.-+++-|+.+-+|+++|..+++.-. ++--.|+.+-.-|..+...||-|.-.|+.+
T Consensus 88 ~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~Lr~kLlqa 150 (152)
T PF15186_consen 88 QWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLLRWKLLQA 150 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888899999999999999999877 888899999999999999999999988864
No 288
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=41.34 E-value=3.2e+02 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820 144 QRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200 (651)
Q Consensus 144 eVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq 200 (651)
++-+....++++-..+++.+.+.+..+..+.+.+...-..|+.-+-.+-++++.+..
T Consensus 17 ~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s 73 (120)
T PF14931_consen 17 EKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKS 73 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455567888888999999999999999999888888888888888888777663
No 289
>PRK14154 heat shock protein GrpE; Provisional
Probab=40.97 E-value=3.8e+02 Score=27.78 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHh
Q 036820 380 SDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKA 442 (651)
Q Consensus 380 s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~ 442 (651)
..|..+|........+|....-++.+||.-.+....+..+++..- .+.++..|--+-+-|..+
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRA 118 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHG 118 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 345555555555666677778889999999999999888887654 456677777777777666
No 290
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.93 E-value=2.4e+02 Score=25.49 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHhhhhH
Q 036820 203 EDKRTLEEERKQKLDRI 219 (651)
Q Consensus 203 edkd~Ae~eLeeKl~~i 219 (651)
.+++.+...|+.+++.|
T Consensus 63 ~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 63 TDKEEAIQELKEKKETL 79 (110)
T ss_pred ecHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 291
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.69 E-value=2.6e+02 Score=30.66 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=59.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHH
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIE 220 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~ 220 (651)
++=|.=+.-+..+.+|++++++.++..--.|.+-+.-|.+.++++.++.-.|+.+.++|-.-++.|.
T Consensus 220 ~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 220 EYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 4556667778899999999999999999999999999999999999999999999999987777653
No 292
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=40.59 E-value=2.4e+02 Score=26.30 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=37.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHH
Q 036820 226 INLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYK 292 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~ 292 (651)
+.-+..++..+=..++.|-+....|+.+++.+..-|+..-|-.+++.... ++++..++|-.+|-
T Consensus 57 l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~---e~eeeSe~lae~fl 120 (150)
T PF07200_consen 57 LEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAAS---EAEEESEELAEEFL 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHHHHHHC-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 33333444444445556666777888888888888888766666555444 34445555544443
No 293
>PRK11519 tyrosine kinase; Provisional
Probab=40.27 E-value=3.3e+02 Score=32.07 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=42.1
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhh
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFT 341 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~ 341 (651)
-|+.++..+-.+-+.++.++...+.++.-+....|.++..| .+.+-+.++.+++.++.....-...++..+..|.
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~--~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~ 345 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLD--SMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLL 345 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 56666666666666666667666666665555555554433 2445555566665555544444444554444443
No 294
>PF13166 AAA_13: AAA domain
Probab=40.13 E-value=6.3e+02 Score=29.06 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATA 457 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~ 457 (651)
.+..+..-+++.+.........|..+..+.++++..+....- ..+...+......++..+..+.. ..
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~i~~-------~~ 430 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI------AKLKEDIEEYQKEIKELEKEINS-------LE 430 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 334555666666666666666666666666665554433221 11112222222222222222222 22
Q ss_pred HhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHhH---hHH-HhHHHHhhhHHHhhhhHHH
Q 036820 458 ENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALE-KQTSKDKEARK---SLE-TDLEEATKSLDEMNRNALE 532 (651)
Q Consensus 458 e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~-~Q~~~d~EaRk---~Le-~dLeeaT~SldEmn~~~~~ 532 (651)
...+.++.++-..-+++-.....++.....+..+|.+|..+= ..+..+...+. .|. .+=..+...|.|==++++.
T Consensus 431 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iA 510 (712)
T PF13166_consen 431 KKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIA 510 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHH
Confidence 233333444444444444444556666778889999999991 22222211111 111 1222345788888899999
Q ss_pred HhHHHhhhh
Q 036820 533 LSKNLEKAN 541 (651)
Q Consensus 533 LS~~Le~an 541 (651)
|+-=|....
T Consensus 511 f~yFla~l~ 519 (712)
T PF13166_consen 511 FAYFLAELK 519 (712)
T ss_pred HHHHHHHHh
Confidence 988777776
No 295
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.11 E-value=3.5e+02 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhhhhhHHHhhhhHhhhhhh
Q 036820 236 KDDGVQKLSSSLQQKETELKNLNSVYKQN 264 (651)
Q Consensus 236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt 264 (651)
.-..+..|...++..+.++..+...|...
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~ 240 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQ 240 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 33458888888999999999988887764
No 296
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.03 E-value=3.7e+02 Score=26.89 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhH
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ 443 (651)
+|..+++.......++..+.-++.+||.-.+....+..++++.- .+-++.+|.-+-+-|..+-
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl 87 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGL 87 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 33344444444444455677888999999999999988877654 4567777777777777664
No 297
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.01 E-value=7e+02 Score=29.56 Aligned_cols=141 Identities=26% Similarity=0.314 Sum_probs=86.7
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHH---HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 036820 113 LEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQL---LMNKLNSANTTISGLGKELQNEKRFIEELRI 189 (651)
Q Consensus 113 iesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQS---LlDQLnSLnsTLtSL~keLqnek~tVEdlk~ 189 (651)
.+.+--|||+-+.-+.-+|..-.- |+.+..-+. .+ +++. ++-+|..+|..+.++.++|+.--.-......
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~l-lk~Et~~~~-----~k-eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E 233 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAML-LKTETLTYE-----EK-EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE 233 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHH-HHhhhcchh-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788777777666665431 111111000 01 1222 3567888888999998888876666666666
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhh
Q 036820 190 EIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSV 260 (651)
Q Consensus 190 eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~ 260 (651)
.+..+-+.|.++.+.+..+.-+-+|--.-+..--|.=.-+.-|++.-++.--+.---+.+-|.|+++|++.
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77777777776666666555443333333333334444566677777777777777888888888888764
No 298
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.99 E-value=6.2e+02 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=18.1
Q ss_pred hhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 036820 459 NRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQ 496 (651)
Q Consensus 459 ~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~ 496 (651)
...-++.++.+.-+.+..|..+|...+.-.+.=-.+|+
T Consensus 151 ~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 151 YYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544443333333
No 299
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=39.80 E-value=2.4e+02 Score=33.18 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=71.2
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHH------HHHHHHHHHhHhhhchhHHH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQ------LKEKLELTLDEACENRATIA 338 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~q------Leekl~~Al~e~~k~~~~Ia 338 (651)
.+..++..|-..-.+....+.+|+..|.+|.. .+|.-+|.|-|..|.- |+.....|+.--..=..+++
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~------~r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La 455 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDLSR------NRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLA 455 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56777777777778888999999999999853 4567777888877764 44445566666556667888
Q ss_pred hhhhh-HHHHHHHHHHhhhhhhhhHH
Q 036820 339 KFTQE-KDDLRKMLDNELGNVKNLKY 363 (651)
Q Consensus 339 ~L~~e-~~~~r~mLd~E~~~~k~L~~ 363 (651)
+++.= +-.+|+.|..++..++.+..
T Consensus 456 ~~~~P~l~~lR~Ala~Di~~L~~~~~ 481 (656)
T PRK06975 456 TSDSPQAVAVRKAIAQDIERLKAAPS 481 (656)
T ss_pred hcCCcchHHHHHHHHHHHHHHhcCCc
Confidence 88875 88999999999999888753
No 300
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=39.21 E-value=4.3e+02 Score=26.87 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=57.1
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
.|......+.....-.+....-+..+...+..++.++..++..-.-++.+|.||-.+++--+.||..|...+..
T Consensus 89 sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 89 SLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666667777777777788888888888888899999999999999999988888776654
No 301
>PRK11281 hypothetical protein; Provisional
Probab=39.19 E-value=9.3e+02 Score=30.71 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh
Q 036820 320 KEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR 376 (651)
Q Consensus 320 eekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR 376 (651)
..+|+..|..... .+..+.++....+..+|+=-....++++.++.-+.++-=+|
T Consensus 287 N~~Ls~~L~~~t~---~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~ 340 (1113)
T PRK11281 287 NLQLSQRLLKATE---KLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSR 340 (1113)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4455555554443 34555666666666666666666666666666555554443
No 302
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.18 E-value=2.6e+02 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=12.4
Q ss_pred HHHHHhhhhHHHHHhhHHH
Q 036820 115 YMKARLKEKEAAIVSLEKD 133 (651)
Q Consensus 115 sm~~kL~e~Eaa~~~lDed 133 (651)
+|..+|+|+.+.|.-|-..
T Consensus 2 sl~~~l~EKDe~Ia~L~eE 20 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEE 20 (74)
T ss_pred hHHHHHHhHHHHHHHHHHH
Confidence 5667777777776655543
No 303
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=39.07 E-value=1.6e+02 Score=24.64 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=38.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHHHhHHH
Q 036820 127 IVSLEKDFESKLQNEQEQRTKQLKS-AKEEQQLLMNKLNSANTTISG 172 (651)
Q Consensus 127 ~~~lDedFEkRLKevQeeVkkLLKk-~kEeeQSLlDQLnSLnsTLtS 172 (651)
|..|-++|+.+.++........++. |...++++...|.+....+..
T Consensus 4 il~LA~~feqkskeqa~ste~~vk~af~~~E~~l~~~L~~s~~~is~ 50 (52)
T PF04837_consen 4 ILNLAKDFEQKSKEQAESTEQMVKNAFEQHEKSLSAALKESEQKISD 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 5567899999999999999999966 799999999999887776653
No 304
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.83 E-value=4.8e+02 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 136 SKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 136 kRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
..|.+...+.+.|+ ++....++.|..++..+..+...+...+.--+.....|.++..-+....+.++.++.+
T Consensus 32 ~~L~e~~kE~~~L~----~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELL----QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 2455566666666666655555555444444444445555544444444444444333
No 305
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.68 E-value=5.7e+02 Score=28.10 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=45.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhh
Q 036820 124 EAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGE 203 (651)
Q Consensus 124 Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEe 203 (651)
-=.|.+|+.++.+.=..+..+-.... .++-+.++|++..+.+..+-..+...|+.-..-|..+.-+...+...|...+.
T Consensus 38 QfQleSlEAaLqKQKqK~e~ek~e~s-~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 38 QFQLESLEAALQKQKQKVEEEKNEYS-ALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555544333333333222 12345666666666666666666666666666666555555555554444444
Q ss_pred hHHHHHHHH
Q 036820 204 DKRTLEEER 212 (651)
Q Consensus 204 dkd~Ae~eL 212 (651)
.+.+...+|
T Consensus 117 elkr~KsEL 125 (307)
T PF10481_consen 117 ELKRCKSEL 125 (307)
T ss_pred HHHHHHHHH
Confidence 444444444
No 306
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=38.62 E-value=4e+02 Score=26.28 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEE-LRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD 237 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEd-lk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke 237 (651)
|...|+.++.+...+...|..+.+.++. +..-...+..-+..-....+.+-..|...+..+. .-+..|+..-.
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq------~~~rneLtnln 91 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ------DTLRNELTNLN 91 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhHHHhhhh
Q 036820 238 DGVQKLSSSLQQKETELKNL 257 (651)
Q Consensus 238 ~~i~~l~SsLa~KE~e~~nL 257 (651)
.-+-.|.||+.--..-+.||
T Consensus 92 sil~nL~ssvTNin~tLnnL 111 (140)
T PF04513_consen 92 SILNNLTSSVTNINATLNNL 111 (140)
T ss_pred HHHHHHHHHHhhHHHHHHHH
No 307
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=38.35 E-value=4.7e+02 Score=27.05 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=60.9
Q ss_pred HHHHHHhHhhhchhHHHhhhhhHHH---------HHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh
Q 036820 322 KLELTLDEACENRATIAKFTQEKDD---------LRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS 392 (651)
Q Consensus 322 kl~~Al~e~~k~~~~Ia~L~~e~~~---------~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~ 392 (651)
-|+.||...+.-...||+..-..+. ++..|++++..+.+.|.-|++..=.+--.|....+
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~k----------- 153 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQGK----------- 153 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 3778888888888888888777665 77888999999988888888887777766654321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcch
Q 036820 393 CADLETEISRIRAEFAEVKHTLGNSL 418 (651)
Q Consensus 393 ~~~L~~qiskl~~E~~e~ke~l~~~l 418 (651)
-.+.++-...++|.+.++......
T Consensus 154 --~~eeEl~~Ae~kfe~s~E~a~~~M 177 (223)
T cd07592 154 --GPDEELKQAEEKFEESKELAENSM 177 (223)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHH
Confidence 145566666777777776655444
No 308
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.21 E-value=6.9e+02 Score=28.95 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhch-HHHHHHHHHh-h--hhhhhh
Q 036820 532 ELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENM-EDAHNLVMRL-G--QERKSL 589 (651)
Q Consensus 532 ~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~-eDA~nli~~L-g--~ERE~~ 589 (651)
-|-..|+.-..+|..++.+..-=+-+|.+|-+.-++....| .+|+||..-| | |=|=++
T Consensus 144 Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~W 205 (475)
T PRK10361 144 PLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNW 205 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcch
Confidence 35667777777777777776666778888887777776665 5899999999 5 456665
No 309
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.02 E-value=4.5e+02 Score=26.75 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=56.3
Q ss_pred hchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 332 ENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 332 k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
+-+.|+..|.+|.-+....+..|-. .|+.|+.+....+.-+... ..++..|+.=+.
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~-------sL~~aq~na~aA~~aa~~A--------------~~q~~~L~~~l~--- 119 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKA-------SLQQAQANAQAAQRAAQQA--------------QQQLETLKAALK--- 119 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH---
Confidence 5566667777777777766666544 4555555554444433222 222333332222
Q ss_pred HHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHH
Q 036820 412 HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456 (651)
Q Consensus 412 e~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~ 456 (651)
..+.+++.+..++...-.||..-..||.-++.-++....+|...
T Consensus 120 -~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~A 163 (188)
T PF05335_consen 120 -AAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAA 163 (188)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344556666666666677766677777777776666666544
No 310
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.90 E-value=1.6e+02 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq 200 (651)
|-.++..|+..|..|...+...+.-+..++.++.++..+|..
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444566666666666666666666666666666666653
No 311
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.63 E-value=6.9e+02 Score=28.79 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 192 DSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSS 245 (651)
Q Consensus 192 eql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~S 245 (651)
++-...+.+-+..++.-+..|..+-..++.++.+..-+.++...+-+.|-.|+.
T Consensus 93 ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~ 146 (514)
T TIGR03319 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQ 146 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 333344444444444445555555555555555555555555444445444443
No 312
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.61 E-value=4.2e+02 Score=26.31 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=57.2
Q ss_pred HHhhHHHHHhhhhhhhHHH-----------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHH
Q 036820 365 LQITQETLETTRNEASDLE-----------KQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELF 433 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~-----------~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~ 433 (651)
+..|=+++++|+.++|++. .+|.+++..-.....+|-+|...--.++..|. +-.+....---.++.
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~---eVS~~f~~ysE~dik 80 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLA---EVSRNFDRYSEEDIK 80 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhcccCHHHHH
Confidence 4445555555555555554 44444444444444444444443333333331 111111112234555
Q ss_pred hHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhh
Q 036820 434 AAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEAT 477 (651)
Q Consensus 434 s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t 477 (651)
.+=|--+..|-+|...=.+-...-..||.|..-|...+.-+|.+
T Consensus 81 ~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 81 EAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666667777777777777776666653
No 313
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.60 E-value=3.5e+02 Score=25.95 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820 382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~ 413 (651)
+..++.+.+.-+..|..+++.+..|++.....
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333333334444444444444444333
No 314
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.52 E-value=2.3e+02 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred eeccccchhccchhhhcCCCCchhhHHHHHhh
Q 036820 70 VGISVLPLLNLRARALDGLAPRSGVLGALYAL 101 (651)
Q Consensus 70 vgisVLP~L~lr~~A~~~~~p~sGvlg~Ly~l 101 (651)
||+.|+--+..|+-----++-+-|+.|+||+-
T Consensus 31 ~g~liv~gvv~rtvGWrvIa~~~~~Yg~lYlY 62 (171)
T PF04799_consen 31 MGVLIVGGVVWRTVGWRVIAVSGSLYGGLYLY 62 (171)
T ss_dssp --------------------------------
T ss_pred hhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555553333334466888999974
No 315
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.51 E-value=4.6e+02 Score=31.60 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=5.1
Q ss_pred cccchhhhh
Q 036820 603 AKGEILRLR 611 (651)
Q Consensus 603 AKGEiLrLR 611 (651)
.+|+|+.+.
T Consensus 638 ~~g~v~~i~ 646 (771)
T TIGR01069 638 QKGKIVQIL 646 (771)
T ss_pred ceEEEEEEc
Confidence 356666653
No 316
>PRK00106 hypothetical protein; Provisional
Probab=37.16 E-value=7.4e+02 Score=29.00 Aligned_cols=178 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhHhcccchHHHHHHHHHHHHHhhhchhhhh-hhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHH
Q 036820 272 SLLVERDDSKQKLEAVQKEYKELKLSSENET-ASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKM 350 (651)
Q Consensus 272 sL~~ek~~~~~k~~~l~key~~lk~ssE~~a-a~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~m 350 (651)
+|+.+...+++=+..-..+=..++...+..| ..=.+...+-+.++.+....+. .+....+..+...-+.++.-..-
T Consensus 36 ~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElE---kel~eEr~rL~qrE~rL~qREE~ 112 (535)
T PRK00106 36 TLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIE---QEFKSERQELKQIESRLTERATS 112 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcch-HHHHhhhhhhh
Q 036820 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSL-DEAKRSGEVLA 429 (651)
Q Consensus 351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l-~eak~~~~~Ls 429 (651)
|+.....+.+-...|...+..|..-..++.....++++...-...-=.+|+-++.| ++|+.|-..+ +++++.+..+
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~--eak~~l~~~~~~~~~~~~~~~- 189 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQA--EAREIILAETENKLTHEIATR- 189 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhHHhHHHHHHHhHHHHHhhhHHHHHHHHhh
Q 036820 430 GELFAAKEVLKKASEELQNVSHELEATAENR 460 (651)
Q Consensus 430 ~El~s~ke~l~k~~eeL~~~S~eL~~~~e~r 460 (651)
+|++-..++++-+.....+.++.-.|
T Consensus 190 -----i~~~e~~a~~~a~~~a~~ii~~aiqr 215 (535)
T PRK00106 190 -----IREAEREVKDRSDKMAKDLLAQAMQR 215 (535)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.89 E-value=1.4e+02 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
..|-.++..++.++..+....+.++..+..++.++.++..+|.+.
T Consensus 27 dqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 27 NQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 345667778888888888888888888888888888888887754
No 318
>PLN02320 seryl-tRNA synthetase
Probab=36.19 E-value=2.1e+02 Score=33.09 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 346 DLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 346 ~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
.-+.||| +|.++...+...+++.. |+-..++ .++-..-.....+..++..++.|.|.+-..+.
T Consensus 62 ~~~~mlD-----~k~ir~n~~~v~~~l~~-R~~~~~v-d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 62 QWKAAID-----FKWIRDNKEAVAINIRN-RNSNANL-ELVLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred ccccccC-----HHHHHhCHHHHHHHHHh-cCCCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888 56666666667777664 4311122 33444444556678888888888888766553
No 319
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.77 E-value=6.9e+02 Score=28.24 Aligned_cols=108 Identities=23% Similarity=0.211 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 169 TISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQ 248 (651)
Q Consensus 169 TLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa 248 (651)
.+++-.+=|++|.+++++-..+.++++..-.+.-+..-.+++=+..-=+.++-|.+=|.-+.+|.---+-.++.+.----
T Consensus 79 k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 79 KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 34444555566666665555555444444443333333333322222234555666666677777777777888888888
Q ss_pred hhHHHhhhhHhhhhhh-----hhhhhhhhhHhc
Q 036820 249 QKETELKNLNSVYKQN-----ELNARASSLLVE 276 (651)
Q Consensus 249 ~KE~e~~nL~~~y~qt-----~Ln~~v~sL~~e 276 (651)
+||.+-+.||.--..+ .||+.-|.-.++
T Consensus 159 Ekeeesq~LnrELaE~layqq~L~~eyQatf~e 191 (401)
T PF06785_consen 159 EKEEESQTLNRELAEALAYQQELNDEYQATFVE 191 (401)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999998766555 788875544444
No 320
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.43 E-value=9e+02 Score=29.46 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=59.1
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH-hhhhHHhhh
Q 036820 147 KQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ-KLDRIEGLQ 223 (651)
Q Consensus 147 kLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee-Kl~~i~~Lq 223 (651)
.|++-...-+..|+.++..+...++..+..+.+...-.+.+...+..+.......+.....++.+++| |.-..--||
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666788888899999888888888888888888888888888888888888888888777776 343333333
No 321
>PHA03332 membrane glycoprotein; Provisional
Probab=35.40 E-value=4e+02 Score=33.92 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhh----HHhhhhhhh-----------hhhhhhhhhhhhhhhhh
Q 036820 180 EKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDR----IEGLQDKIN-----------LLSLELREKDDGVQKLS 244 (651)
Q Consensus 180 ek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~----i~~Lq~kin-----------LLs~e~~~Ke~~i~~l~ 244 (651)
++..+..++..|+.+.+.+.+..+-|..+-..|+-+++. |+.|+|-|| -|-.+++ +.+..+|
T Consensus 896 mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~---~~~~~~N 972 (1328)
T PHA03332 896 MASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLK---ELGTTTN 972 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHH
Confidence 445555555555556666666666665555555555543 333333333 3333222 2344456
Q ss_pred hhhhhh---HHHhhhhHhhhhhh
Q 036820 245 SSLQQK---ETELKNLNSVYKQN 264 (651)
Q Consensus 245 SsLa~K---E~e~~nL~~~y~qt 264 (651)
+.+..- -.=||.||++-+|-
T Consensus 973 ~~ie~~~aaalyYQQlnsltnqv 995 (1328)
T PHA03332 973 ERIEEVMAAALYYQQLNSLTNQV 995 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 23467777776664
No 322
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.34 E-value=4.5e+02 Score=25.98 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhH
Q 036820 179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLN 258 (651)
Q Consensus 179 nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~ 258 (651)
-++..|.++...+.+++..+..+-...+.++.++.+--..+.-++++.-+--. .+.|+-.+..=.....-+..+..|.
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~--~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA--AGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777778888888888888888888765421 2334444443333333333333333
Q ss_pred hhhhhh-----hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 036820 259 SVYKQN-----ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLEL 325 (651)
Q Consensus 259 ~~y~qt-----~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~ 325 (651)
-.|.+. .|...+..|-....+.+.+.+.+.-.++--++......+...--...-...|..++++...
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence 333332 4444444444444455555555555554444444333322222144555555555555443
No 323
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.34 E-value=69 Score=30.65 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHH
Q 036820 226 INLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQK 289 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~k 289 (651)
+.-+..+|.+..+.+..+.......+.++.+|++.-+-.+|-..|..|-.+......+|..+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666666666667777777777666667777777777776666666666654
No 324
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.02 E-value=2.8e+02 Score=30.86 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=27.8
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
|.++.......++|.+-.-.+..+-.++-.......++..++..|+.|.|.+-..+.
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~ 61 (418)
T TIGR00414 5 KLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIG 61 (418)
T ss_pred HHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444322111111233334444455667777777777776655553
No 325
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=34.92 E-value=5.6e+02 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=32.5
Q ss_pred CchhhHHHHHhhhhhh-hHhHHHHHHHHHHHhhhhHHHHHhhHHH
Q 036820 90 PRSGVLGALYALTQNE-KKATDATLEYMKARLKEKEAAIVSLEKD 133 (651)
Q Consensus 90 p~sGvlg~Ly~l~q~e-kka~~~tiesm~~kL~e~Eaa~~~lDed 133 (651)
+|.++|-.||+|+..= ...++.-...++..+.+-+..+..++..
T Consensus 37 egA~aLC~l~~L~~~v~~~~ad~l~~~~~~~~~~i~~~~~~v~~~ 81 (286)
T PF11727_consen 37 EGAAALCTLKDLVEKVRNETADYLVKETEDFLGDIKLHKEQVDHR 81 (286)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999887 6666666677776666666666666543
No 326
>PRK14153 heat shock protein GrpE; Provisional
Probab=34.91 E-value=3.8e+02 Score=27.46 Aligned_cols=66 Identities=17% Similarity=0.342 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHhH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~~ 443 (651)
++..+..+++.......+|.-+.-++.+||.-.+....+..++++..+ +-++.+|--+-+-|..+-
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl 100 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERAL 100 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 355555666666666667777778888888888888888887776543 456666666666666553
No 327
>PRK14147 heat shock protein GrpE; Provisional
Probab=34.34 E-value=4.8e+02 Score=26.00 Aligned_cols=60 Identities=18% Similarity=0.358 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHh
Q 036820 383 EKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKA 442 (651)
Q Consensus 383 ~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~ 442 (651)
..+++..+.-..+|....-++++||.-.+...++.++++..-+ +.++.+|--+-+=|..+
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerA 84 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAG 84 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3334444444445566677888999999999888888876543 45666777666666665
No 328
>PRK14162 heat shock protein GrpE; Provisional
Probab=33.91 E-value=5.3e+02 Score=26.37 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=52.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHh
Q 036820 375 TRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKA 442 (651)
Q Consensus 375 sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~ 442 (651)
+-+++..|..++........+|..+.-++++||.-.+....+.+++++.. .+.++.+|-.+-+-|..+
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA 105 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 44556667777777777777888888999999999999999998887654 456777777777777766
No 329
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=5.2e+02 Score=26.09 Aligned_cols=59 Identities=31% Similarity=0.466 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh-hhhhhhhhHHhHHHHHHHh
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR-SGEVLAGELFAAKEVLKKA 442 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~-~~~~Ls~El~s~ke~l~k~ 442 (651)
.++..|..++++ +..+.-++++||.-.+..+++..+++.. ..+-++.+|--+-+=|.++
T Consensus 43 ~~i~~Le~q~~e-------~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerA 102 (193)
T COG0576 43 QEIAELEAQLEE-------LKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERA 102 (193)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777666 7778889999999999999999988754 4566777777777766666
No 330
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.31 E-value=1e+03 Score=29.48 Aligned_cols=34 Identities=9% Similarity=0.357 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820 262 KQNELNARASSLLVERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 262 ~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk 295 (651)
.+|-||-.+.....-+.+.+.++..+.+-|...-
T Consensus 50 ~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaq 83 (916)
T KOG0249|consen 50 MNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQ 83 (916)
T ss_pred HHHHHhhhhhhHHhhhcccccccchHHHHHHhcc
Confidence 4557778888888999999999999999997654
No 331
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=33.29 E-value=3.3e+02 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELR 188 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk 188 (651)
.+++..+.++..|..+...+..++.+...+.
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l 35 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEELL 35 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555444
No 332
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=33.28 E-value=1.8e+02 Score=28.62 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHH-HHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKE-LQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKL 216 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~ke-Lqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl 216 (651)
++.-..+.++|..+..+|.+..+. =-.++..+.+++..+.+....|.+.+-....-..+|.++|
T Consensus 33 k~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~l 97 (155)
T PF07464_consen 33 KEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKL 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 344444444444444333332222 1135566666666666666666655444444444444443
No 333
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.28 E-value=1.8e+02 Score=32.17 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHhhhhHhhhhhh---------hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHH
Q 036820 251 ETELKNLNSVYKQN---------ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKE 321 (651)
Q Consensus 251 E~e~~nL~~~y~qt---------~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLee 321 (651)
+.-+++|++-+.-+ .||.++.+|+..-..+--.+++++.-|+.+--.-+.|++.=.++.-|.+..-.+.|+
T Consensus 247 ~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 247 GPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655555 899999999999999999999999999998887777776555554444443334443
Q ss_pred HHHHHHhHhhh
Q 036820 322 KLELTLDEACE 332 (651)
Q Consensus 322 kl~~Al~e~~k 332 (651)
+ +.+.+|-+.
T Consensus 327 ~-G~~msDGap 336 (384)
T KOG0972|consen 327 Q-GAKMSDGAP 336 (384)
T ss_pred h-cccccCCch
Confidence 3 445555443
No 334
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=33.07 E-value=4.1e+02 Score=24.81 Aligned_cols=82 Identities=17% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 395 DLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
++.+.++||..-..++...+..-+-.= .++|..==.-++..+.-++.+-..+.+....-+-|++|+++=|.++
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~-------~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~ 102 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSN-------HEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKI 102 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhC-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HhhHHHHHH
Q 036820 475 EATANDLKE 483 (651)
Q Consensus 475 E~t~~eL~~ 483 (651)
+..+.-|.+
T Consensus 103 ~~~~~~L~r 111 (132)
T PF10392_consen 103 QKLTSQLER 111 (132)
T ss_pred HHHHHHHHH
No 335
>PF15050 SCIMP: SCIMP protein
Probab=32.24 E-value=42 Score=32.46 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=31.0
Q ss_pred cccccccCc----CCCC--CCCCcccccccccccchhhhhhhhccccceeccCCCCCCCcc
Q 036820 6 GSSSFKQPL----LHFP--SSSSSFYSQSSLLLCTNNARTKRRNRLSAMASMRPGDPKDNI 60 (651)
Q Consensus 6 g~s~~l~~l----~~~p--sSSss~~~~s~~~~~~~~~~~~~~~r~~~~a~~~~~~~~~~~ 60 (651)
++++-|+|| ..|| +|++.+.|+.|..++.++ +.+.|++.++.+.+-+++++|+.
T Consensus 64 ~~~~~LPpLPPRg~~s~~~~spqetPs~ppatYS~vn-k~r~kk~vsipsyiePe~DYDDV 123 (133)
T PF15050_consen 64 QSPVQLPPLPPRGSPSPEDSSPQETPSQPPATYSLVN-KVRNKKTVSIPSYIEPENDYDDV 123 (133)
T ss_pred CCcCCCCCCCCCCCCCccccCcccCCCCCCchhhhhH-hhccceeeccccccCcccccccc
Confidence 455567776 1222 233333344444455554 33436677777999999999664
No 336
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=32.10 E-value=4.4e+02 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHH
Q 036820 110 DATLEYMKARLKEKEAAIVSLEKDFE 135 (651)
Q Consensus 110 ~~tiesm~~kL~e~Eaa~~~lDedFE 135 (651)
...+..+.....+....|..|.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 40 (213)
T PF00015_consen 15 VEEMEEIQESIEEIAESIEELSESSE 40 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 337
>PRK04325 hypothetical protein; Provisional
Probab=32.02 E-value=2e+02 Score=25.02 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSL 198 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL 198 (651)
++..+|..|..++.--..+|++++..+-+-...|
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555444444333
No 338
>PRK14141 heat shock protein GrpE; Provisional
Probab=31.85 E-value=5.2e+02 Score=26.74 Aligned_cols=92 Identities=16% Similarity=0.295 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh-hhhhhhhhHHhHHHHHHHhHHHHHh-----hhHHHHH
Q 036820 382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR-SGEVLAGELFAAKEVLKKASEELQN-----VSHELEA 455 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~-~~~~Ls~El~s~ke~l~k~~eeL~~-----~S~eL~~ 455 (651)
++.+|........+|....-++++||.-.+...++.++++.. ..+-++.+|--+-+-|..+-+-... ....+.+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~ 115 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKA 115 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHH
Confidence 555666666666777788889999999999999999888765 4466788888888888776432111 0112334
Q ss_pred HHHhhhhhhHHHHHHHHH
Q 036820 456 TAENRDSLRKELVNIYKK 473 (651)
Q Consensus 456 ~~e~rd~L~kEL~d~YKK 473 (651)
+.+--+-..+.|+++++|
T Consensus 116 l~eGv~mi~k~l~~vLek 133 (209)
T PRK14141 116 LIEGVEMTERAMLNALER 133 (209)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444555555554
No 339
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.71 E-value=2.4e+02 Score=25.60 Aligned_cols=71 Identities=28% Similarity=0.253 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHh
Q 036820 203 EDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLV 275 (651)
Q Consensus 203 edkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ 275 (651)
+.++.++.+++.-+|.|..||=.|.-|..+...-...++.+.++=..-+.+.+.|.. .|+...+|+.+|+-
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~--E~~~WqerLr~LLG 74 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE--QQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 456778888888888888888888777666666666666666665555555555543 44466777777764
No 340
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.59 E-value=9.9e+02 Score=28.76 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLL 229 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLL 229 (651)
-..|.+.|-.+-..+..+.+..-.+..|+.+++..+.++...+...+..+-.+..-++..+..|+.+|.+...-
T Consensus 17 ~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~ 90 (683)
T PF08580_consen 17 ALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIA 90 (683)
T ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 34455557777777777778888899999999999999999999999999999999999999999888665443
No 341
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.43 E-value=1e+03 Score=29.02 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=26.2
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHH
Q 036820 301 ETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLD 352 (651)
Q Consensus 301 ~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd 352 (651)
|+..|.+-...+|+ .|+--++.++..-..-...|++|++=++..+.|-+
T Consensus 264 ~~~~d~e~~~~rd~---~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~ 312 (861)
T KOG1899|consen 264 RLMADGEHKSLRDN---TLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQ 312 (861)
T ss_pred HHhhcccchhhHHH---HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhh
Confidence 34445544444444 34444444444444445577777777776666544
No 342
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.37 E-value=1e+03 Score=28.86 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=21.8
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Q 036820 367 ITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE 420 (651)
Q Consensus 367 ~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e 420 (651)
..++-+..-..++.+|=+.|++-+........++.++..|..+.++.|....++
T Consensus 506 ~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 559 (782)
T PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK 559 (782)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444433333333344444444444444444444333
No 343
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.58 E-value=8.6e+02 Score=27.73 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHH
Q 036820 114 EYMKARLKEKEAAIVSLEKDFES 136 (651)
Q Consensus 114 esm~~kL~e~Eaa~~~lDedFEk 136 (651)
.+|..||.+-++|+..-|.++..
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~ 180 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAIT 180 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHH
Confidence 77888999999988877766553
No 344
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=30.34 E-value=3.7e+02 Score=23.39 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=5.1
Q ss_pred hhhhhhHHHHHH
Q 036820 459 NRDSLRKELVNI 470 (651)
Q Consensus 459 ~rd~L~kEL~d~ 470 (651)
.++.|.+.+.++
T Consensus 90 q~~~L~~~f~~~ 101 (117)
T smart00503 90 QTEKLRKKFKEV 101 (117)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 345
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.30 E-value=4.1e+02 Score=25.94 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHHhh
Q 036820 279 DSKQKLEAVQKEYKELK 295 (651)
Q Consensus 279 ~~~~k~~~l~key~~lk 295 (651)
+..+.|..|++.|.+|=
T Consensus 120 Gldeqi~~lkes~~yLF 136 (155)
T PF06810_consen 120 GLDEQIKALKESDPYLF 136 (155)
T ss_pred cHHHHHHHHHhcCchhc
Confidence 46667777777766653
No 346
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.06 E-value=2.4e+02 Score=23.94 Aligned_cols=8 Identities=50% Similarity=0.592 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 036820 181 KRFIEELR 188 (651)
Q Consensus 181 k~tVEdlk 188 (651)
+.+|++++
T Consensus 17 e~~ie~Ln 24 (69)
T PF04102_consen 17 EDTIEELN 24 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 347
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.97 E-value=1.4e+02 Score=34.52 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 198 LLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 198 LsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
+......++.++.+..+.+..|..|++++.-|..++-
T Consensus 86 ~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg 122 (619)
T PF03999_consen 86 LPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELG 122 (619)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3334444445567777777777777777776666653
No 348
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=29.66 E-value=65 Score=29.75 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLS 230 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs 230 (651)
+.-++.|++-+|.==..--++...|...+..+.+....+.+.+..+......++.....+..+|+....+..+...|.
T Consensus 40 ~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~ 117 (133)
T PF06148_consen 40 KELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLK 117 (133)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555566666666666666666666666666666666666666666666555443
No 349
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.52 E-value=49 Score=36.06 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDD 238 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~ 238 (651)
+..++..+.........++......+.+++.+++....+...+...+......+.. .+..|..+|.-+...|.+-|+
T Consensus 82 ~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~---~~~~l~~Ri~e~Eeris~lEd 158 (370)
T PF02994_consen 82 IIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLEN---IDESLNSRIDELEERISELED 158 (370)
T ss_dssp ------------------------------------H----------------------------HHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHhHHHHHHH
Confidence 33333334444444444455555555666666666665555444444433322211 112444555555555555555
Q ss_pred hhhhhhhhhhhhHHHhhh
Q 036820 239 GVQKLSSSLQQKETELKN 256 (651)
Q Consensus 239 ~i~~l~SsLa~KE~e~~n 256 (651)
.+.++...+..++...+.
T Consensus 159 ~~~~i~~~~~~~~k~i~~ 176 (370)
T PF02994_consen 159 RIEEIEQAIKELEKRIKK 176 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555544443
No 350
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.49 E-value=5.2e+02 Score=24.88 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhh
Q 036820 240 VQKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASN 305 (651)
Q Consensus 240 i~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~d 305 (651)
.+.+-|++..-|.+|+.|.-..+|. ..-..-.++-.+..+..+..+.+...|..++..++.|--.|
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~ 89 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKD 89 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHH
Confidence 3556778888999999998888776 33333344444444555555566666666666666554443
No 351
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=5.7e+02 Score=25.31 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=52.8
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhh---hhHHh
Q 036820 145 RTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKL---DRIEG 221 (651)
Q Consensus 145 VkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl---~~i~~ 221 (651)
+...+++.-++...+..+++.---.-.+. .+++|-..+|..+...|++..+.++.+....+.++.-+.+|- ...+.
T Consensus 35 ~~~qL~~l~~y~~ey~q~~~~k~~~G~s~-~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~k~~e~ 113 (148)
T COG2882 35 AEEQLKMLSGYRNEYEQNLNEKLKSGVSA-AQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEK 113 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544433333333 234888889999999999999999999999999998888874 44455
Q ss_pred hhhh
Q 036820 222 LQDK 225 (651)
Q Consensus 222 Lq~k 225 (651)
|++|
T Consensus 114 L~er 117 (148)
T COG2882 114 LKER 117 (148)
T ss_pred HHHH
Confidence 5554
No 352
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.39 E-value=5.3e+02 Score=24.93 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--
Q 036820 334 RATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK-- 411 (651)
Q Consensus 334 ~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k-- 411 (651)
...|.+=|.|+-.+|.+.-+-|-.+.+.|.-++.....+...+.+..+...++...+.-...+..+..++.....+.+
T Consensus 55 ~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 55 NEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ------HHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHH
Q 036820 412 ------HTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQ 447 (651)
Q Consensus 412 ------e~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~ 447 (651)
-.|-+-.+........|-.++...+.-+.-....+.
T Consensus 135 ~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 135 GGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 353
>PF13166 AAA_13: AAA domain
Probab=29.30 E-value=9.3e+02 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcch
Q 036820 393 CADLETEISRIRAEFAEVKHTLGNSL 418 (651)
Q Consensus 393 ~~~L~~qiskl~~E~~e~ke~l~~~l 418 (651)
...+...+..+...+......|..++
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544
No 354
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.11 E-value=6.7e+02 Score=26.03 Aligned_cols=127 Identities=28% Similarity=0.324 Sum_probs=73.9
Q ss_pred HHHHHhh---HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH---HHhhhhhhhhhHHhH
Q 036820 362 KYELQIT---QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE---AKRSGEVLAGELFAA 435 (651)
Q Consensus 362 ~~~lq~T---qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e---ak~~~~~Ls~El~s~ 435 (651)
.+.++.. .+-|++.|+-+..|+++=...-..|..++.+.-.|..++...++.-..-..+ .+.-.+-|+++
T Consensus 56 Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~---- 131 (193)
T PF14662_consen 56 QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATE---- 131 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh----
Confidence 3444444 6667777777777777777777777777777777777776666554443333 33333333333
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036820 436 KEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQT 502 (651)
Q Consensus 436 ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~ 502 (651)
...|++--++-.+.+-.||.+ +-+.-+..+....-+.+=+.|.-.|--|.--|+.|+
T Consensus 132 -------~~~Lq~Ql~~~e~l~~~~da~---l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 132 -------KATLQRQLCEFESLICQRDAI---LSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555443 344444555555555566666666666777777776
No 355
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.92 E-value=9.5e+02 Score=27.76 Aligned_cols=139 Identities=17% Similarity=0.273 Sum_probs=83.7
Q ss_pred hhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHH
Q 036820 359 KNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEV 438 (651)
Q Consensus 359 k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~ 438 (651)
.-++.+|...++.++..+.|-..--.+|..++.-.+..+.+......+...+.+-|.+--. -+.-|-.+|..+-+.
T Consensus 84 r~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~----Q~q~lqtrl~~l~~q 159 (499)
T COG4372 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK----QAQDLQTRLKTLAEQ 159 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3456666666666666666655555566655555555555554444444444444433222 233455666667666
Q ss_pred HHHhHHHHHhh---hHHHHHHHHhhhhhhHHHHHHHH---HhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036820 439 LKKASEELQNV---SHELEATAENRDSLRKELVNIYK---KAEATANDLKEQKEIVSSLNKELQALEKQTSK 504 (651)
Q Consensus 439 l~k~~eeL~~~---S~eL~~~~e~rd~L~kEL~d~YK---K~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~ 504 (651)
.++..++++.. +++|-... ..|+.+-.|.|+ ++|--..+|-.-++-+-.+.+||..++.+.+.
T Consensus 160 r~ql~aq~qsl~a~~k~LQ~s~---~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 160 RRQLEAQAQSLQASQKQLQASA---TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665543 44444433 345556666664 56777778888888899999999888766543
No 356
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.84 E-value=4e+02 Score=23.30 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=46.8
Q ss_pred hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchH
Q 036820 358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLD 419 (651)
Q Consensus 358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~ 419 (651)
...|-.-++.+=+|....+.++..|.++-+....-+..|..+..++..|-+..++.|..=|+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888888888888888888888888888888887777777665444
No 357
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=28.81 E-value=6.5e+02 Score=25.82 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=47.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-hHHHhHHHHHH---------HHHHHHhHHHHHHHHHh-HHHHHHHHHHHHHH
Q 036820 125 AAIVSLEKDFESKLQNEQEQRTKQLKS-AKEEQQLLMNK---------LNSANTTISGLGKELQN-EKRFIEELRIEIDS 193 (651)
Q Consensus 125 aa~~~lDedFEkRLKevQeeVkkLLKk-~kEeeQSLlDQ---------LnSLnsTLtSL~keLqn-ek~tVEdlk~eIeq 193 (651)
.+|..++..|.+.+ +.++..++.. +++.=.++.++ ++.+..++..++..+.. .+.-..++...++.
T Consensus 124 ~~~~~~~~~~~~e~---e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~ 200 (229)
T PF11101_consen 124 QAFSQLDEFFDQEF---EQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQA 200 (229)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888998544 4444444422 34433333333 33444444444444432 34445577888888
Q ss_pred HHhHHHhhhhhHHHHHHHHHHhh
Q 036820 194 LQTSLLKFGEDKRTLEEERKQKL 216 (651)
Q Consensus 194 l~ssLsqAEedkd~Ae~eLeeKl 216 (651)
+|+++... +..+.+|..++
T Consensus 201 lC~~l~~L----~~~E~~L~~~I 219 (229)
T PF11101_consen 201 LCDSLQQL----DQQEQQLQQRI 219 (229)
T ss_pred HHHHHHHH----HHHHHHHHHhc
Confidence 89888854 45555555544
No 358
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.66 E-value=5.5e+02 Score=24.91 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=3.9
Q ss_pred chhhHHHH
Q 036820 91 RSGVLGAL 98 (651)
Q Consensus 91 ~sGvlg~L 98 (651)
|-|+-|.|
T Consensus 20 gC~i~~~L 27 (146)
T PF08702_consen 20 GCGIQDFL 27 (146)
T ss_dssp HHHHHHHH
T ss_pred cchHHHHH
Confidence 45554444
No 359
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=28.43 E-value=9.6e+02 Score=27.61 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=80.3
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH----HHhHH----------HhHHHHHHHHHHHHhHH-
Q 036820 107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL----KSAKE----------EQQLLMNKLNSANTTIS- 171 (651)
Q Consensus 107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL----Kk~kE----------eeQSLlDQLnSLnsTLt- 171 (651)
.++..|+..|-+.| .....--+-.|-+|+.+.|+.+.+|. +..+| -..+|.|....++=--|
T Consensus 252 ~~l~~~l~~tan~l---r~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTR 328 (421)
T KOG2685|consen 252 EALDQTLRETANDL---RTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTR 328 (421)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHH
Confidence 35566777777765 34566678899999999999999888 11111 12233333222221111
Q ss_pred -------------------HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhh
Q 036820 172 -------------------GLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDK 225 (651)
Q Consensus 172 -------------------SL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~k 225 (651)
.+-.++..++.++..++.++.+++.++..-.++..+++.+|.=|=.++=|=.+|
T Consensus 329 le~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ek 401 (421)
T KOG2685|consen 329 LENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREK 401 (421)
T ss_pred HHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHH
Confidence 355778889999999999999999999999999999999988887766554444
No 360
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=28.26 E-value=8.5e+02 Score=26.93 Aligned_cols=211 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHhHHH----HHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHh
Q 036820 299 ENETASNAKRLREKKEE----LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLET 374 (651)
Q Consensus 299 E~~aa~da~lL~eke~~----l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~ 374 (651)
|.+-.-|.+.+.+|-+. |+-=+|-|-......++- +-.|+-|---+.--|++|=.+...|--++++
T Consensus 26 E~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~Q---Ln~L~aENt~L~SkLe~EKq~kerLEtEiES------- 95 (305)
T PF14915_consen 26 EKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQ---LNVLKAENTMLNSKLEKEKQNKERLETEIES------- 95 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-------
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHH
Q 036820 375 TRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELE 454 (651)
Q Consensus 375 sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~ 454 (651)
+|....---.+.+++..+-.||+.-.-+-.+||--++.-+.-.+...+.-.+.|+--|..+.--...-+.+|+.+-..|.
T Consensus 96 ~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr 175 (305)
T PF14915_consen 96 YRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR 175 (305)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHH
Q 036820 455 ATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEA 519 (651)
Q Consensus 455 ~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeea 519 (651)
.-+=.-..+|.+|--+.-..--.-.-.--|..-|..--.-=+.++.-+.-=---=--|.-.||.|
T Consensus 176 EKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 176 EKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=28.25 E-value=4.7e+02 Score=29.71 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=34.9
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhh
Q 036820 152 AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSL 231 (651)
Q Consensus 152 ~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~ 231 (651)
++--+|...+.-.+++.++..+...+.+.+.. .++......+..+.........-...|- ..|+.|||=|.-|..
T Consensus 160 LavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~--s~~~~~~~~R~~~~~~k~~L~~~sd~Ll---~kVdDLQD~VE~LRk 234 (424)
T PF03915_consen 160 LAVLRQLYSEFQSEVKESISSIREKIKKVKSA--STNASGDSNRAYMESGKKKLSEESDRLL---TKVDDLQDLVEDLRK 234 (424)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33345555566666777777777776666652 2222233444444444443334444443 346667777777776
Q ss_pred hhhh-----hhhhhhhhhhhhhhhHHHhhhhHhhhhh
Q 036820 232 ELRE-----KDDGVQKLSSSLQQKETELKNLNSVYKQ 263 (651)
Q Consensus 232 e~~~-----Ke~~i~~l~SsLa~KE~e~~nL~~~y~q 263 (651)
++=. ....+..+..-+..-..+++.+..+|+.
T Consensus 235 DV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 235 DVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6533 2334445555555555555555555543
No 362
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.22 E-value=6.2e+02 Score=25.37 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhh
Q 036820 480 DLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEK 539 (651)
Q Consensus 480 eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ 539 (651)
+|.+=++-+..|..||+ +...-|++.=..+..++..|..+++-.+.|..+|-.-+-.
T Consensus 111 ~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 111 ELEELKKELKELKKELE---KYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333444455555655 3344688888999999999999999999999988766544
No 363
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=28.05 E-value=7e+02 Score=25.93 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820 311 EKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK 390 (651)
Q Consensus 311 eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~ 390 (651)
+-+.+|.|++++...|-.+-......|..|..++ +-+..+-...+.--.....+...|..+-....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~--------------k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~ 74 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKL--------------KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE 74 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhH
Q 036820 391 DSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSH 451 (651)
Q Consensus 391 ~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~ 451 (651)
.-...|+.+|..++.+...+.+...++-.++.+ |-.+|..+++-+.+++++|..+..
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~----lq~el~~ar~~~~~ak~~L~~~~~ 131 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEE----LQEELEEAREDEEEAKEELLEVMS 131 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
No 364
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=27.95 E-value=4.1e+02 Score=23.21 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhh
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGE 431 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~E 431 (651)
.+.+...=.|=-+|-+-|.+.|-+-.+-=..++..+.+-.+.++.+.+++++|+..-..|.-|
T Consensus 5 ~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555555666788888888888888888999999999999999999999999877766543
No 365
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.93 E-value=4.5e+02 Score=23.64 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHH
Q 036820 97 ALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKE 176 (651)
Q Consensus 97 ~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~ke 176 (651)
.-|-|=.+--.++-.=...|......-+..+..|+.-|+ .=+++++||+.+..+|+.+..-
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~-------------------~l~~~l~~Id~Ie~~V~~LE~~ 81 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE-------------------ELQPYLQQIDQIEEQVTELEQT 81 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 036820 177 LQNEKRFIEELRIEIDSL 194 (651)
Q Consensus 177 Lqnek~tVEdlk~eIeql 194 (651)
....+.++-.+..++..+
T Consensus 82 v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 82 VYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHhhcC
No 366
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.89 E-value=2.4e+02 Score=30.88 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=40.3
Q ss_pred HHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHH
Q 036820 407 FAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEAT 456 (651)
Q Consensus 407 ~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~ 456 (651)
...++..|....+.+..+...|.+|++.+.+.+-.+|.||-..-..|..+
T Consensus 120 ~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 120 LEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888888999999999999999999886666665555
No 367
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=27.81 E-value=9.1e+02 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=23.1
Q ss_pred hhHHHHHhhhhhhhHhHHHHHHHHHHHhhhh
Q 036820 93 GVLGALYALTQNEKKATDATLEYMKARLKEK 123 (651)
Q Consensus 93 Gvlg~Ly~l~q~ekka~~~tiesm~~kL~e~ 123 (651)
|+-||+|...++.....+.+......+|.--
T Consensus 49 a~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~ 79 (390)
T PRK10920 49 AAGAGLYYHGKQQAQNQTATNDALANQLTAL 79 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888888877788887777776543
No 368
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.79 E-value=7.3e+02 Score=27.44 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 133 DFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 133 dFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
....++..+..++...++......+.--..|..++..+..+-..+..++.-.+.+..-|...+..|. ..|.|.+.|
T Consensus 29 ~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk----~LD~AKrNL 104 (383)
T PF04100_consen 29 KLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIK----QLDNAKRNL 104 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445556666666666633222223334557788888889999999999988888888888877776 467788888
Q ss_pred HHhhhhHHhhhhhh
Q 036820 213 KQKLDRIEGLQDKI 226 (651)
Q Consensus 213 eeKl~~i~~Lq~ki 226 (651)
..=+-.+.-||==+
T Consensus 105 T~SIT~LkrL~MLv 118 (383)
T PF04100_consen 105 TQSITTLKRLQMLV 118 (383)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776666655433
No 369
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.74 E-value=8.6e+02 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhHHHH
Q 036820 111 ATLEYMKARLKEKEAAI 127 (651)
Q Consensus 111 ~tiesm~~kL~e~Eaa~ 127 (651)
-||--+++||||.|..+
T Consensus 68 V~iRHLkakLkes~~~l 84 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRL 84 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999987544
No 370
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.62 E-value=4e+02 Score=29.38 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=42.1
Q ss_pred hhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820 217 DRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 217 ~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~ 293 (651)
..|..|-.+|.-....-..-|..|+++.... |.+|+-+=|.+.+-|-|+ +++-|..+-+..+.-+. .++|.+
T Consensus 64 ~~i~~L~~~i~~ik~kA~~sE~~V~~it~dI--k~LD~AKrNLT~SIT~Lk-rL~MLv~a~~qL~~~~~--~r~Y~e 135 (383)
T PF04100_consen 64 EAIQELFEKISEIKSKAEESEQMVQEITRDI--KQLDNAKRNLTQSITTLK-RLQMLVTAVEQLKELAK--KRQYKE 135 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--cCCHHH
Confidence 4445555555555555666777777777766 446666666677777554 45555555554444333 344543
No 371
>PRK14163 heat shock protein GrpE; Provisional
Probab=27.41 E-value=7.3e+02 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHhH
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~~ 443 (651)
.|..+++..+.-..+|...+-++++||.-.+....+..++++.-+ +.++..|--+-+-|.++-
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl 107 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAR 107 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 344455555555556667778899999999999999888887654 556777777777777763
No 372
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.33 E-value=1.4e+03 Score=29.31 Aligned_cols=108 Identities=23% Similarity=0.311 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh-------hhHHHHHHHHhhhhhhHHHHHHH
Q 036820 399 EISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN-------VSHELEATAENRDSLRKELVNIY 471 (651)
Q Consensus 399 qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~-------~S~eL~~~~e~rd~L~kEL~d~Y 471 (651)
+.++=+.||...+..|.+.|+=.++ +-.-..+--.+.-+.+.+.++++ +-..+.++ +.+.. |+ -
T Consensus 778 ~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k 848 (1141)
T KOG0018|consen 778 EFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----K 848 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----H
Confidence 3444455666666666666654444 22333333333333333333333 33333333 22222 22 4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHh
Q 036820 472 KKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETD 515 (651)
Q Consensus 472 KK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~d 515 (651)
.|++....|+.+=|+++.-|++++..|.+++..-...+-.++-+
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~e 892 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESE 892 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 56677777888888999999999888888876544444444333
No 373
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.21 E-value=6e+02 Score=24.83 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
|.+.-...++..+.-++.....+++++..|.....+|.+.+.. ..-+.+|.++|..++.+....++.++
T Consensus 7 Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~-----------~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 7 IMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS-----------AKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556656666666666666666666666555542 22456677778888888877777777
Q ss_pred cchHHHHh
Q 036820 416 NSLDEAKR 423 (651)
Q Consensus 416 ~~l~eak~ 423 (651)
..+.+.+-
T Consensus 76 ~~l~~~~~ 83 (155)
T PF06810_consen 76 AKLAQMKK 83 (155)
T ss_pred HHHHHHHH
Confidence 77766554
No 374
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.19 E-value=1.7e+02 Score=31.29 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=54.3
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~ 344 (651)
++..+++.+..+|.+..+.+.+++-+|.++. +-|.+-+-+..+|+|+|..-.+++.+=+....+|.-..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~-----------erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQ-----------ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 6778888899999999999999999998774 34667778888999999888877777666666665543
No 375
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.15 E-value=2.3e+02 Score=24.04 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820 187 LRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD 237 (651)
Q Consensus 187 lk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke 237 (651)
+...|..+++.++=.+..++.+-.-+-+.=..|+.|+..+.+|...+++-.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777778877777777777777777778888888887777776644
No 376
>PRK04406 hypothetical protein; Provisional
Probab=27.10 E-value=2.7e+02 Score=24.42 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 186 ELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 186 dlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
.+...|..++..++=-+..|+.+-.-+-+.=-.|+.|+..+.+|...++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444445555555555544443
No 377
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.99 E-value=4.4e+02 Score=27.71 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=33.2
Q ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036820 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK 411 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k 411 (651)
|-+....=.-+|....+|+++|.+....++.|..+|.+|+..=-..=
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444567778888888888888888888888888877644443
No 378
>PRK11519 tyrosine kinase; Provisional
Probab=26.96 E-value=7.7e+02 Score=29.16 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQ 195 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ 195 (651)
.+...+.+++.-+.++|..++.-.+.....+..-+
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555444433
No 379
>PRK15396 murein lipoprotein; Provisional
Probab=26.77 E-value=2.9e+02 Score=24.66 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs 199 (651)
|-.+++.++.++..+....+..+.-+..++.++.++..+|.
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555566666655554
No 380
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=26.19 E-value=1.1e+03 Score=28.03 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHHHHhhhch
Q 036820 278 DDSKQKLEAVQKEYKELKLSS 298 (651)
Q Consensus 278 ~~~~~k~~~l~key~~lk~ss 298 (651)
++.--+|+.+..+-.+|-...
T Consensus 485 ~gl~l~L~~l~~~vd~Lpl~~ 505 (656)
T PRK06975 485 TGLAIKLDDAIAKIDALPLSG 505 (656)
T ss_pred HHHHHHHHHHHHHHhhCcCCC
Confidence 344455666666666665543
No 381
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.18 E-value=6.6e+02 Score=25.00 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhh-hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhH
Q 036820 452 ELEATAENRDSL-RKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNA 530 (651)
Q Consensus 452 eL~~~~e~rd~L-~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~ 530 (651)
-|+.|+.+-+.- .+++-+||-++....-.|---|.=...|-..-..|+..+ +.|+.=++.|-.-...|+=-.
T Consensus 63 rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl-------~~l~~tierAE~l~sqi~vvl 135 (159)
T PF05384_consen 63 RLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRL-------RNLEETIERAENLVSQIGVVL 135 (159)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444433332 357888998887766655433333333333333333222 345555666777777777777
Q ss_pred HHHhHHHhhhhhccccch
Q 036820 531 LELSKNLEKANSQISNLE 548 (651)
Q Consensus 531 ~~LS~~Le~ans~issle 548 (651)
-.|++.|...+..|.++.
T Consensus 136 ~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 136 NYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 778888877776665554
No 382
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=26.15 E-value=38 Score=36.05 Aligned_cols=22 Identities=23% Similarity=0.668 Sum_probs=13.5
Q ss_pred ccchhhhhheeeccccchhccch
Q 036820 60 IFTRRKTILLVGISVLPLLNLRA 82 (651)
Q Consensus 60 ~~~~rr~iL~vgisVLP~L~lr~ 82 (651)
.+..||.| ++|+.+-|++-+..
T Consensus 41 ~~~~rr~~-~~~~~~~~~~~~~~ 62 (263)
T PLN00067 41 VVIHRREL-LLGLALAPLILIAP 62 (263)
T ss_pred chhHHHHH-HhhhhhhhhhhccC
Confidence 34555554 56888878665544
No 383
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=25.89 E-value=1.2e+03 Score=27.96 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=118.8
Q ss_pred hhhhHhcccchHHHHHHHHHHHHHhhhc--hhhhhh-hhhh---------hhhHhHHHHHHHHHHHHHHHhHhhhchhHH
Q 036820 270 ASSLLVERDDSKQKLEAVQKEYKELKLS--SENETA-SNAK---------RLREKKEELHQLKEKLELTLDEACENRATI 337 (651)
Q Consensus 270 v~sL~~ek~~~~~k~~~l~key~~lk~s--sE~~aa-~da~---------lL~eke~~l~qLeekl~~Al~e~~k~~~~I 337 (651)
..-+..+++..-..+..+++.-+.|+.. +|..-. .|.. .+.+.+.-+.++..- +-.+.-.-...|
T Consensus 347 ~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~---~~~~~~~~~e~~ 423 (607)
T KOG0240|consen 347 KRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGS---LEEEEDILTERI 423 (607)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccc---hHHHHHHHHHHH
Confidence 4456667777777777888877777632 222111 1111 111222222222110 112222334456
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036820 338 AKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNS 417 (651)
Q Consensus 338 a~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~ 417 (651)
+.|-+.+|+.-.+++--..-.-+|+..+.--.+.+..-|-..+++..++.+....++.-+.++-..+.-+.+.......+
T Consensus 424 ~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~ 503 (607)
T KOG0240|consen 424 ESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQK 503 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 67777777666666555555556777777778888889999999999999988888888888888888888888888887
Q ss_pred hHHHHhhhh-hhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 036820 418 LDEAKRSGE-VLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKA 474 (651)
Q Consensus 418 l~eak~~~~-~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~ 474 (651)
+.+-+..-. -+++||.++++.. .|+=.-.++..+.|.++|-.+-.++
T Consensus 504 ~~~~~~~~~~n~~sel~sl~~~~----------~~~~~r~~~~~~~l~~~~~~~~~~~ 551 (607)
T KOG0240|consen 504 SEEKESKLSQNLKSELQSLQEPS----------EHQSKRITELLSELRKDLGEIGWKI 551 (607)
T ss_pred HHHHhhhhhhhhHHHHHhhhhcc----------cchhHHHHHHHHHHHhhhccccccc
Confidence 777664333 3678887777654 2344455666677777776665554
No 384
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.81 E-value=7.5e+02 Score=25.54 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh-hhhhhhhhHHhHHHHHHHhHH
Q 036820 380 SDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR-SGEVLAGELFAAKEVLKKASE 444 (651)
Q Consensus 380 s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~-~~~~Ls~El~s~ke~l~k~~e 444 (651)
-.|..+++.......++..+.-++++||.-.+....+.+++++. ..+.++..|.-+-+-|.++-.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~ 81 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATA 81 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHh
Confidence 44555555555555667777788899999999999888877754 446677777777777776643
No 385
>smart00338 BRLZ basic region leucin zipper.
Probab=25.79 E-value=2.2e+02 Score=23.35 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
..+..|+.+.......|..|..+|+.+..|...++.-+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888888888888877654
No 386
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=25.69 E-value=5.7e+02 Score=24.07 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 312 KKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 312 ke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
=+.....++.+++.| ...+|.-.|+.|+..++..++--.++ ..+.-.+.-..+.+.+|.....+|++++.
T Consensus 22 C~~K~~~Ie~qI~~A--k~~gN~~rv~GLe~AL~~v~~~Ctd~--------~l~~e~q~ki~~~~~kV~ere~eL~eA~~ 91 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYA--KAHGNQHRVAGLEKALEEVKAHCTDE--------GLKAERQQKIAEKQQKVAEREAELKEAQA 91 (115)
T ss_pred HHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHhhcCCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677787776 46788889999999988777655443 33444556677788889999999988887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 392 SCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 392 ~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
.-.. ..|.|-+.-++|++.-|.
T Consensus 92 ~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 92 KGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred hCCH--HHHHHHHHHHHHHHHHHh
Confidence 7555 677777777777766553
No 387
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.66 E-value=7.3e+02 Score=25.34 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhh-hhhhhhHHhHHHHHHHhH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSG-EVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~-~~Ls~El~s~ke~l~k~~ 443 (651)
+..++..+++..+.-..+|....-+++++|.-.+....+.++.++.-+ ..++..|--+-+-|.++-
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl 104 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERAL 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666777788888888888888888888776543 456666777776666653
No 388
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=25.31 E-value=4.4e+02 Score=22.69 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIE 185 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVE 185 (651)
....|..++..|..+.+.+++++.-+.
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666665555443
No 389
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=25.27 E-value=5.3e+02 Score=23.58 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH---HHHhHHHhhhhhHHHHHHHHHHhhhhHHhh---hhhhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEID---SLQTSLLKFGEDKRTLEEERKQKLDRIEGL---QDKINLLSL 231 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIe---ql~ssLsqAEedkd~Ae~eLeeKl~~i~~L---q~kinLLs~ 231 (651)
.+.+..+++...|..+...+..++.+...+....+ .++..+...-..+...-..++.+|..|... .+... -+.
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~-~s~ 81 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN-GSS 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CcH
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhh
Q 036820 232 ELREKDDGVQKLSSSLQQKETELKNLNSVYKQ 263 (651)
Q Consensus 232 e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~q 263 (651)
+..-+.-....|+..+..-=.+|+.+..-|..
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 113 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PRK12704 phosphodiesterase; Provisional
Probab=25.21 E-value=1.1e+03 Score=27.26 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=9.5
Q ss_pred HhhhhhhhhhHhhhhhH
Q 036820 581 RLGQERKSLDKRSKKLE 597 (651)
Q Consensus 581 ~Lg~ERE~~e~r~kkLE 597 (651)
|-|.-|++++.=.+.|+
T Consensus 430 Rpgar~~~~e~~i~rl~ 446 (520)
T PRK12704 430 RPGARRETLENYIKRLE 446 (520)
T ss_pred CCCCccccHHHHHHHHH
Confidence 34777766665444443
No 391
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.99 E-value=1e+03 Score=26.89 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHH-HHHHHHHHHHHhHHH
Q 036820 107 KATDATLEYMKARLKEKEAAIVSLEKDFESKLQN-EQEQRTKQLKSAKEE 155 (651)
Q Consensus 107 ka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKe-vQeeVkkLLKk~kEe 155 (651)
.....++..|...|.|-....+.|...|+ +|++ .+.++.-+.+..+++
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e-~Lk~~~~~e~~~~~~~LqEE 256 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIE-KLKEQYQREYQFILEALQEE 256 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 34556788899999999999999999998 5554 666665555544443
No 392
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.98 E-value=2.8e+02 Score=23.88 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--------------------hhhhhhhhhHhcccc
Q 036820 220 EGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--------------------ELNARASSLLVERDD 279 (651)
Q Consensus 220 ~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--------------------~Ln~~v~sL~~ek~~ 279 (651)
+.++.+++=|..++..-...++.+...+..-+.=...|..+-+.+ .|..++..+-.+-+.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHhhh
Q 036820 280 SKQKLEAVQKEYKELKL 296 (651)
Q Consensus 280 ~~~k~~~l~key~~lk~ 296 (651)
...++..+.+++.+++.
T Consensus 81 l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 393
>PRK00846 hypothetical protein; Provisional
Probab=24.78 E-value=2.6e+02 Score=24.98 Aligned_cols=46 Identities=17% Similarity=0.019 Sum_probs=20.2
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 190 EIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 190 eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
.|..++..++=.+..|+.+-..+-.--..|+.|+..|.+|...+++
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344334444444445555555555554444
No 394
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.31 E-value=7.9e+02 Score=25.27 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=55.4
Q ss_pred HHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhH
Q 036820 372 LETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 372 L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ 443 (651)
.+.+=.++..|..++...+.-..+|....-++.+||.-.+....+..+++..- .+.++.+|--+-+-|..+-
T Consensus 40 ~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl 112 (196)
T PRK14145 40 QQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERAL 112 (196)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 33444556667777888888888888888999999999999999999888654 4667777777777777663
No 395
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=24.30 E-value=8.1e+02 Score=25.35 Aligned_cols=183 Identities=20% Similarity=0.320 Sum_probs=87.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN 448 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~ 448 (651)
..++...++++..-+.+....+..|..|...+..+..=..+...++..-|++.+......-.++ .+...+.+.
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i-------~~~~~erdq 80 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEI-------QKLLKERDQ 80 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH-------HHHHhhHHH
Confidence 4455566666555556666666666666655544433333333344444555444432222222 222333333
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHhHhHHHhHHHHhhhHH
Q 036820 449 VSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKD----KEARKSLETDLEEATKSLD 524 (651)
Q Consensus 449 ~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d----~EaRk~Le~dLeeaT~Sld 524 (651)
...+|.+ +.+-.-|.+++.|..-..+..=|+-=.+|-+.++....-+... ---+.--+.-|+.|-.-++
T Consensus 81 ~~~dL~s-------~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 81 AYADLNS-------LEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred HHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 2233333333333322222222222223333333333222222 2233445677888888888
Q ss_pred Hhhhh----HHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhh
Q 036820 525 EMNRN----ALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIA 565 (651)
Q Consensus 525 Emn~~----~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t 565 (651)
++.++ ++.|--.|-.+-.++.||+..-+.-.+--.|=.++|
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkIC 198 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKIC 198 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 455666777777778777766555444444444443
No 396
>PHA00724 hypothetical protein
Probab=24.26 E-value=12 Score=33.30 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=16.9
Q ss_pred CCccccccccc---cCcCCCCCCCCcccccc
Q 036820 1 MDLVMGSSSFK---QPLLHFPSSSSSFYSQS 28 (651)
Q Consensus 1 m~f~mg~s~~l---~~l~~~psSSss~~~~s 28 (651)
|||+||+-.|| +---.-+=|+|.||-+-
T Consensus 31 mgfvmgtigflvfv~~~tditfsastfyl~~ 61 (83)
T PHA00724 31 MGFVMGTIGFLVFVQNYTDITFSASTFYLSF 61 (83)
T ss_pred HHHHHhHhheeEEEecCceeEEecchhHHHH
Confidence 89999999996 33222333445555443
No 397
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.18 E-value=8.1e+02 Score=26.58 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc---hHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhh
Q 036820 387 KQSKDSCADLETEISRIRAEFAEVKHTLGNS---LDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSL 463 (651)
Q Consensus 387 ~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~---l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L 463 (651)
++...++++|+.-+|-+++.-.+.++.|.+. +++-+++.+.|..-...++.+...+.+ ..+.++|..-..+-...
T Consensus 92 eelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se--~rv~~el~~K~~~~k~~ 169 (268)
T PF11802_consen 92 EELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE--SRVFQELKTKIEKIKEY 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHh
Q 036820 464 RKELVNIYKKA 474 (651)
Q Consensus 464 ~kEL~d~YKK~ 474 (651)
+++|+..-.-+
T Consensus 170 ~e~Ll~~LgeF 180 (268)
T PF11802_consen 170 KEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHH
No 398
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.08 E-value=9.1e+02 Score=28.28 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=26.1
Q ss_pred hhhHhHHHHHHHHHHHhhhhHHHHHhhHHHH--HHHHHHHHHHHHHHH
Q 036820 104 NEKKATDATLEYMKARLKEKEAAIVSLEKDF--ESKLQNEQEQRTKQL 149 (651)
Q Consensus 104 ~ekka~~~tiesm~~kL~e~Eaa~~~lDedF--EkRLKevQeeVkkLL 149 (651)
+|.-.+..+++.++..+++.++.....-++- ..++...+..++.+-
T Consensus 157 ~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~ 204 (555)
T TIGR03545 157 GEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIK 204 (555)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 3444455667777777777776655443333 344555555555554
No 399
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.97 E-value=1.3e+03 Score=27.84 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhh
Q 036820 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQ 241 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~ 241 (651)
|..+|+++-.-.+-....=..+++-+..+-+ ..++.+......=+..|.+.|.++|=|...+.+.-....
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~--~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYK--RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 4555555555555555444555555555554 566677777777778888888888888888877665555
No 400
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=6.6e+02 Score=24.21 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 204 DKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSL 247 (651)
Q Consensus 204 dkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsL 247 (651)
.++.+-.+|+++++.++ -||+-|.-.-++.++.+.+|-+-|
T Consensus 67 ~k~~~~~eL~er~E~Le---~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 67 SKEEAVDELEERKETLE---LRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667776665543 366666666566666665555544
No 401
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.89 E-value=3.6e+02 Score=29.20 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 036820 150 KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTS 197 (651)
Q Consensus 150 Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ss 197 (651)
..+..-++...|-++.+..+|+.-+++|+++.+.|+.+..+|+++.++
T Consensus 25 ~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 25 DALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334455677778888888888888888888888888888888888775
No 402
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.58 E-value=6.8e+02 Score=24.25 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELF 433 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~ 433 (651)
.-..+...|+++..+..+...-......++.+++.--+.=++.|+.-++.+.+|..
T Consensus 38 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~ 93 (161)
T COG0711 38 RQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIK 93 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888888888888888888888777788888888887777653
No 403
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.49 E-value=2.4e+02 Score=23.91 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820 170 ISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202 (651)
Q Consensus 170 LtSL~keLqnek~tVEdlk~eIeql~ssLsqAE 202 (651)
+.++..++.+++..++..+.+++++...+...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554333
No 404
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.38 E-value=4.8e+02 Score=24.58 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=40.9
Q ss_pred hhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHHHhH
Q 036820 105 EKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKS-AKEEQQLLMNKLNSANTTI 170 (651)
Q Consensus 105 ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk-~kEeeQSLlDQLnSLnsTL 170 (651)
+...++..|..+..++++....+..+..+|++-.+..+++.....+. ...-=..|++.++.+..-+
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~ 78 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERAL 78 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888888887777777776666632 1222333444444444333
No 405
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=23.32 E-value=7.9e+02 Score=24.91 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=48.7
Q ss_pred HHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHH---------HHHHHHHhhhhhhhhhHhhhhhHHHH
Q 036820 530 ALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMED---------AHNLVMRLGQERKSLDKRSKKLEEEL 600 (651)
Q Consensus 530 ~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eD---------A~nli~~Lg~ERE~~e~r~kkLEeEL 600 (651)
-..+-..|-..|+++.++..==+-+...+++-+....+....+.. +....+.|..|+..+..+..-|+-||
T Consensus 94 L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 94 LQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555444332 34556677777777777777777777
Q ss_pred hhc--ccchhhhhhcc
Q 036820 601 ASA--KGEILRLRSQI 614 (651)
Q Consensus 601 AsA--KGEiLrLR~qi 614 (651)
.++ --+++++|+..
T Consensus 174 ~s~~~rq~L~~~qrdl 189 (240)
T PF12795_consen 174 LSNNNRQELLQLQRDL 189 (240)
T ss_pred HCcHHHHHHHHHHHHH
Confidence 654 33555555543
No 406
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.29 E-value=1.2e+02 Score=34.79 Aligned_cols=52 Identities=13% Similarity=0.304 Sum_probs=0.0
Q ss_pred hcccchHHHHHHHHHHHHHhhhchh---hhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 036820 275 VERDDSKQKLEAVQKEYKELKLSSE---NETASNAKRLREKKEELHQLKEKLELT 326 (651)
Q Consensus 275 ~ek~~~~~k~~~l~key~~lk~ssE---~~aa~da~lL~eke~~l~qLeekl~~A 326 (651)
.+-.+...+.++|+|+|..|+..-+ .+-..+-.-|.+.+.++.+|+.+++.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 407
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=23.27 E-value=3.4e+02 Score=20.64 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
.|-+....+..-|..++..+.++...++.+...+..+...+.+|
T Consensus 17 ~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 17 ELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555666677777788888888888888888888887777643
No 408
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.26 E-value=3.4e+02 Score=22.21 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhh
Q 036820 172 GLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDR 218 (651)
Q Consensus 172 SL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~ 218 (651)
.+..++...+..++++..+++.+...+.....+-+.++.--+++++.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 33344444444444444444444444444444555666666666654
No 409
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=23.22 E-value=1e+03 Score=27.99 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=49.8
Q ss_pred hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Q 036820 431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQTSKDKEARK 510 (651)
Q Consensus 431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk 510 (651)
|+..+-..|..-..+|..++.++..+-.....||-+ -.=...|-+||+.|..++..+++.-.
T Consensus 45 e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq------------------~~N~k~L~~eL~~Ll~~l~i~~~~l~ 106 (701)
T PF09763_consen 45 ECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQ------------------SANQKLLLNELENLLDTLSIPEEHLE 106 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH------------------HHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333444444445555555555555555555432 22234577788888888888877776
Q ss_pred hHHH-hHHHHhhhHHHhhhhHHHHhHHHhh
Q 036820 511 SLET-DLEEATKSLDEMNRNALELSKNLEK 539 (651)
Q Consensus 511 ~Le~-dLeeaT~SldEmn~~~~~LS~~Le~ 539 (651)
.|.. +++ -..++..+-.++..|.+.+..
T Consensus 107 ~L~~~~l~-~~~~l~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 107 ALRNASLS-SPDGLEKIEEAAEALYKALKA 135 (701)
T ss_pred HHhcCCCC-CcccHHHHHHHHHHHHHHHHh
Confidence 6654 222 223455566666667766655
No 410
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.95 E-value=1.4e+02 Score=26.21 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=54.7
Q ss_pred HhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhh
Q 036820 519 ATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQ 584 (651)
Q Consensus 519 aT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ 584 (651)
...+...+...|..|=..|..|.+.|.++.+ +.+++.+|...-.+-+++++-=..++.++|.
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888889999999999999999999999 9999999999999998888887777777763
No 411
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.62 E-value=4.9e+02 Score=29.27 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=14.8
Q ss_pred hhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 360 NLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 360 ~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
.+...++...+.+...+.+..++..++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEK 159 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 412
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=22.55 E-value=3.9e+02 Score=21.13 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGE 203 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEe 203 (651)
..|-.....++.-|..+...|.++..-++.+...+.++...+.++..
T Consensus 14 ~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 14 QELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888888888888888888888888887776643
No 413
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.53 E-value=1.3e+03 Score=26.95 Aligned_cols=114 Identities=11% Similarity=0.268 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhH-HHHHHHhHHHHHhhhHH-----
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAA-KEVLKKASEELQNVSHE----- 452 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~-ke~l~k~~eeL~~~S~e----- 452 (651)
...+..+|.+.+..+..++.+...+...+...++....++..-+..-+.|..+.-.+ -++|......+...+++
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~l 141 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSL 141 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555444444444444444433221 12232222222222221
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 036820 453 LEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLN 492 (651)
Q Consensus 453 L~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn 492 (651)
|.-.-|.-+..++.+-++|+.--...-.|..+=+-+..+|
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n 181 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666654444444444444333333
No 414
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.21 E-value=6.9e+02 Score=24.39 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 036820 200 KFGEDKRTLEEERKQKLDRIEGLQDKINLLS 230 (651)
Q Consensus 200 qAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs 230 (651)
.....++.+..+|+.+-..++.|+..+.=|.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555554444333
No 415
>PRK00295 hypothetical protein; Provisional
Probab=22.05 E-value=4.6e+02 Score=22.46 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 036820 182 RFIEELRI 189 (651)
Q Consensus 182 ~tVEdlk~ 189 (651)
++|++++.
T Consensus 19 ~tie~Ln~ 26 (68)
T PRK00295 19 DTIQALND 26 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 416
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=1.8e+02 Score=28.41 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHH
Q 036820 400 ISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVL 439 (651)
Q Consensus 400 iskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l 439 (651)
..++++-+.+.++++.+.|+.-++..+.....+..+|-+|
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999999999999999888876
No 417
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.95 E-value=3.9e+02 Score=24.39 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 170 ISGLGKELQNEKRFIEEL--RIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 170 LtSL~keLqnek~tVEdl--k~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
+.....+++.+...++.+ ...+.+++..++..+.+++.+...+
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444 5555555555555555555544443
No 418
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=21.87 E-value=4.9e+02 Score=23.28 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhhHHH-HHHHHHHHHHHHHHHH--HHhHHHhHHHHHHHHHHHH-hHHHHHHH
Q 036820 108 ATDATLEYMKARLKEKEAAIVSLEKD-FESKLQNEQEQRTKQL--KSAKEEQQLLMNKLNSANT-TISGLGKE 176 (651)
Q Consensus 108 a~~~tiesm~~kL~e~Eaa~~~lDed-FEkRLKevQeeVkkLL--Kk~kEeeQSLlDQLnSLns-TLtSL~ke 176 (651)
++.+.|..++.+...-+..+..+..+ +...-..++.-+..|. .-++|..|.|+++++..+- |+..+..+
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rgvt~~~v~~e 76 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRGVTVKDVYEE 76 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 34445555555444444444444443 3344445555566666 4479999999999998875 34444443
No 419
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=21.56 E-value=31 Score=32.43 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH---HHHHHhhhhHHhhhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE---EERKQKLDRIEGLQDKIN 227 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae---~eLeeKl~~i~~Lq~kin 227 (651)
...++.+..+...|..+...+..+...+++++..+..+...+..++.....+. ..|.+||..|+.+++-.+
T Consensus 13 ~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~ 86 (138)
T PF06009_consen 13 ANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNS 86 (138)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 33445555555666666666666666666666666655555555555444444 234455555555554433
No 420
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.54 E-value=5.5e+02 Score=22.43 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE 210 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~ 210 (651)
.++|.+..++..+..+...-.....-.+.+..++.+++..-..|..-++.+=+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444455555555555555555555444444433
No 421
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.50 E-value=5e+02 Score=23.71 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=50.9
Q ss_pred HHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhh
Q 036820 531 LELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKL 596 (651)
Q Consensus 531 ~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkL 596 (651)
+.|-+-+-....+|++|..+.+-..+.+..|..+..+-+....+-+.++....+...-++..+-.-
T Consensus 14 l~L~~~l~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~ 79 (110)
T PF10828_consen 14 LGLGGWLWYQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEER 79 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788999999999999999999999999888888877777777766555555444433
No 422
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.47 E-value=8.4e+02 Score=24.54 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=56.6
Q ss_pred hhhhhhhhhHhcccch----HHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhh
Q 036820 265 ELNARASSLLVERDDS----KQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKF 340 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~----~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L 340 (651)
..+..+..++-+|... -++|..|.|.|..-....-.+.|.+. + ..--+.+.+.-.++...|..-- ..-|..+
T Consensus 19 ~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~-i-~~e~e~~a~~H~~~a~~L~~~v--~~~l~~~ 94 (236)
T cd07651 19 RTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDT-L-RLETESMAKSHLKFAKQIRQDL--EEKLAAF 94 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3444455555555433 34455566666432111123444432 1 1222333444444444443211 1124445
Q ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 341 TQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 341 ~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
..+....|+.+.+++. ++....+.+-..|.+++......-.+++..+.
T Consensus 95 ~~~~~~~rK~~~~~~~---k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~ 142 (236)
T cd07651 95 ASSYTQKRKKIQSHME---KLLKKKQDQEKYLEKAREKYEADCSKINSYTL 142 (236)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555556666655444 34444555666777777776666666555443
No 423
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.26 E-value=5e+02 Score=27.24 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 175 KELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 175 keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
.+.....+-...++.+++.....+..++++.+.+..+.+++.+..+.|-++-+.|..+|..
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3444455555566666666677777777777777777777777777777776666665543
No 424
>PRK00846 hypothetical protein; Provisional
Probab=21.26 E-value=5.5e+02 Score=22.95 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 036820 127 IVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIE 190 (651)
Q Consensus 127 ~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~e 190 (651)
++.-|.+++.||-+.+..+. |++ +-+..+|..|+.++..+.....-+.-+..+
T Consensus 4 ~~~~~~~le~Ri~~LE~rlA-----fQe------~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 4 LSLRDQALEARLVELETRLS-----FQE------QALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHH-----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433 222 334445555555555444444433333333
No 425
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.12 E-value=1.2e+03 Score=27.55 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchh
Q 036820 220 EGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSE 299 (651)
Q Consensus 220 ~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE 299 (651)
+.+.+|..-...-+.--++.+..+...|...|..++....-+.-.++....+.++..-.+.+.++..+..++.++..--
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~- 334 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY- 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhh
Q 036820 300 NETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQIT 368 (651)
Q Consensus 300 ~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~T 368 (651)
..-.-...=|..+-..|.+--..+..-+......+..+.+|..+.+..+.+...=+.....++-....+
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~ 403 (726)
T PRK09841 335 KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA 403 (726)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 426
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.01 E-value=9.4e+02 Score=24.93 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHh
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKA 442 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~ 442 (651)
.-.|..++++.+....+|.-++-++.++|.-.+....+.++++..- .+.++..|--+-+-|.++
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerA 120 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERV 120 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3445556666666666777788899999999999999998888654 456777788887777776
No 427
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=7.6e+02 Score=23.81 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHH------HHHhhhH
Q 036820 493 KELQALEKQTSKDKEARKSLETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLT------EQKSIAN 566 (651)
Q Consensus 493 ~eL~al~~Q~~~d~EaRk~Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~------eqk~~t~ 566 (651)
..++-|..|+..---.|..+++.|.|+.+-|+|.+.- . |-...|+.++ .+..+..
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l------------------~-eD~~vYk~VG~llvk~~k~~~~~ 73 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL------------------D-EDAPVYKKVGNLLVKVSKEEAVD 73 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------C-cccHHHHHhhhHHhhhhHHHHHH
Confidence 4678888888888899999999999999999887642 1 2223444433 3455555
Q ss_pred HHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhh
Q 036820 567 ESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELAS 602 (651)
Q Consensus 567 EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAs 602 (651)
+-.+..|+=..=|..|-+-=+.++.|.++|..+|-.
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666555543
No 428
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.79 E-value=1.4e+03 Score=26.99 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhhhhh-hHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 036820 344 KDDLRKMLDNELGNVKN-LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAK 422 (651)
Q Consensus 344 ~~~~r~mLd~E~~~~k~-L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak 422 (651)
.+++.+-|-+=|+++.. -+.-.|.|.-.+...|+...-|+.-...+-.--.||...|..|...|.--.++|..+|.++.
T Consensus 310 ~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~ 389 (531)
T PF15450_consen 310 AEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAK 389 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34444444444444321 33334445555555555555555555666666678888888888888888888888888886
Q ss_pred hhhhhhhhhH----------HhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHH
Q 036820 423 RSGEVLAGEL----------FAAKEVLKKASEELQNVSHELEATAENRDSLRKE 466 (651)
Q Consensus 423 ~~~~~Ls~El----------~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kE 466 (651)
. +.-+++= ..+.-+++..++.++..=.++..+...++..+-+
T Consensus 390 ~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd 441 (531)
T PF15450_consen 390 N--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSD 441 (531)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 5 2222221 1222334444444444444555555555544433
No 429
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=20.72 E-value=1.2e+03 Score=26.17 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=84.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHH--hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhh
Q 036820 145 RTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQ--NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGL 222 (651)
Q Consensus 145 VkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLq--nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~L 222 (651)
+.+.++.+.++=+.--+++..+.+.|+.-+..-. .-+.-.+.....|.++++.+...+.+.+.++.-..+.=-.|-+|
T Consensus 177 r~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~L 256 (372)
T COG3524 177 RRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGL 256 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhH
Confidence 3444444444444444444444444444332211 11222334445677888888888888888888776777788999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhh--hhhhhHHHhhhh--HhhhhhhhhhhhhhhhHhcccchHHH
Q 036820 223 QDKINLLSLELREKDDGVQKLSS--SLQQKETELKNL--NSVYKQNELNARASSLLVERDDSKQK 283 (651)
Q Consensus 223 q~kinLLs~e~~~Ke~~i~~l~S--sLa~KE~e~~nL--~~~y~qt~Ln~~v~sL~~ek~~~~~k 283 (651)
.-+|+-|.+++.---..|---++ +|+---+||+.| ...+-|--+-.-+.+|-.+|-|+..+
T Consensus 257 karieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsArieAdrq 321 (372)
T COG3524 257 KARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIEADRQ 321 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998888765555544444 677777777765 23344445555577777777666654
No 430
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=1.1e+03 Score=25.44 Aligned_cols=113 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhh
Q 036820 298 SENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRN 377 (651)
Q Consensus 298 sE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~ 377 (651)
+..+-..|+=+=...+..++-+.+-+. +|+.. ++|.+.+..||.-=..-.++.-..++--.+..-..+.
T Consensus 25 ~n~~s~~D~f~q~~r~~~~nS~~efar-~lS~~----------~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieq 93 (246)
T KOG4657|consen 25 HNQRSKIDSFIQSPRRRSMNSLVEFAR-ALSQS----------QVELENLKADLRETENELVKVNELKTEKEARQMGIEQ 93 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEA 421 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~ea 421 (651)
+++.+..+|+-.+..+|+|..+.+....=+.+.++.+-+..+.+
T Consensus 94 eik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~ 137 (246)
T KOG4657|consen 94 EIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENA 137 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 431
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=20.66 E-value=1.4e+02 Score=32.02 Aligned_cols=48 Identities=35% Similarity=0.479 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820 573 EDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620 (651)
Q Consensus 573 eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~ 620 (651)
+|++.+...+-..-+.+..+.+.|+.||--||-+|-++|..|....+.
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv 245 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSV 245 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence 344444444432233377789999999999999999999999887664
No 432
>PLN02917 CMP-KDO synthetase
Probab=20.60 E-value=62 Score=33.90 Aligned_cols=12 Identities=67% Similarity=0.437 Sum_probs=5.6
Q ss_pred CCCCCCcccccc
Q 036820 17 FPSSSSSFYSQS 28 (651)
Q Consensus 17 ~psSSss~~~~s 28 (651)
+||||||++|+|
T Consensus 1 ~~~~~~~~~~~~ 12 (293)
T PLN02917 1 SPSSSSSSSSSS 12 (293)
T ss_pred CCcccCCccccc
Confidence 355555533333
No 433
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.57 E-value=3.1e+02 Score=27.83 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=39.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSK 390 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~ 390 (651)
+.+.|.+.-|...+=|+.|+....+=-+-|+..+..++..||++..|..+|+...
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777766666666667777778888899988888887654
No 434
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.52 E-value=3.1e+02 Score=27.62 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 365 LQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 365 lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
++.+.......++|...|..++.+.+..+..|+.++.+|..+...+++-+.
T Consensus 92 l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 92 LKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.51 E-value=6.3e+02 Score=22.70 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=31.6
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhHHHhHHHHHHHHHHHHh
Q 036820 115 YMKARLKEKEAAIVSLEKDFESKLQNEQEQ--RTKQLKSAKEEQQLLMNKLNSANTT 169 (651)
Q Consensus 115 sm~~kL~e~Eaa~~~lDedFEkRLKevQee--VkkLLKk~kEeeQSLlDQLnSLnsT 169 (651)
+|+.=|..-++||..|+...+.|+-..+.. ...-++..+..+..|-..|+.....
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 566667777888888888888777665553 2222233444444444444444433
No 436
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.49 E-value=9.3e+02 Score=24.68 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS 424 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~ 424 (651)
..++...|..-+.+-.+|..++..+...+.+--.++.+.|.+-+.+
T Consensus 151 ~~~~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~ 196 (251)
T PF09753_consen 151 QASLEKILQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKV 196 (251)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777766666666655554443
No 437
>PRK15396 murein lipoprotein; Provisional
Probab=20.48 E-value=4.2e+02 Score=23.71 Aligned_cols=45 Identities=7% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHH
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKR 206 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd 206 (651)
+++.+.+.|..+......+..-+..++..++.+......|+.-+|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555544444443
No 438
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.41 E-value=9.8e+02 Score=24.89 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=48.6
Q ss_pred HHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh-hhhhhhhhHHhHHHHHHHhH
Q 036820 372 LETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR-SGEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 372 L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~-~~~~Ls~El~s~ke~l~k~~ 443 (651)
+.....+...|..++........++..+..+++++|.-.+....+..+++.. ...-++..|.-+-+-|.++-
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl 128 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAA 128 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 3344444555555555666666666777788888888888888888877654 44566777777777776663
No 439
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.38 E-value=3.6e+02 Score=27.87 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=65.7
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHH--HhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH--hHHHhHHHH---HHH
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKA--RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKS--AKEEQQLLM---NKL 163 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~--kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk--~kEeeQSLl---DQL 163 (651)
.+-|+|.|-+-- ==|.|.|.|++++.. |+++++=.- ++ |.+.|+.=| +-|
T Consensus 25 sq~v~~~lq~e~-lgktavqk~Ld~La~~Gki~~K~YGK----------------------qKIY~a~QDqF~~~~~eel 81 (201)
T KOG4603|consen 25 SQDVFGNLQREH-LGKTAVQKTLDQLAQQGKIKEKMYGK----------------------QKIYFADQDQFDMVSDEEL 81 (201)
T ss_pred hHHHHHHHHHHh-ccchHHHHHHHHHHHcCchhHHhccc----------------------eeeEeecHHhhcCCChHHH
Confidence 778888875543 235677888877654 333332110 01 111111111 123
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
+-+.-.+..+...+|....++.....+|..+.+.++ ++-+|++|+-|..++.+-++++.++
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-------------------~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-------------------TEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555666666665554 6778999999999999988888877
Q ss_pred hhh
Q 036820 244 SSS 246 (651)
Q Consensus 244 ~Ss 246 (651)
-+-
T Consensus 143 k~g 145 (201)
T KOG4603|consen 143 KAG 145 (201)
T ss_pred HHh
Confidence 654
No 440
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=20.16 E-value=1e+03 Score=24.96 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820 132 KDFESKLQNEQEQRTKQL--KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209 (651)
Q Consensus 132 edFEkRLKevQeeVkkLL--Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae 209 (651)
..|-.-|....+..+++. +... +...-.+-|.-+++++..-++..+.++.-++.-+-.-+-.+.++.++++.+..++
T Consensus 89 s~~G~aL~~~g~a~~~ia~~~~~~-~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~ 167 (220)
T cd07617 89 TPYGKTLIKVGETQKRLGAAERDF-IHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQ 167 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 345555555555554444 1111 1233345667788888888999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhhhhhhhhhhhhhhhh-hhhhhhhhhhh
Q 036820 210 EERKQKLDRIEGLQDKINLLSLELREKD-DGVQKLSSSLQ 248 (651)
Q Consensus 210 ~eLeeKl~~i~~Lq~kinLLs~e~~~Ke-~~i~~l~SsLa 248 (651)
.+..+..+.-.. +=+.|.+-+ +.|+.|+..+.
T Consensus 168 ~kf~~~~E~a~~-------~M~~il~~~~e~l~~L~~lv~ 200 (220)
T cd07617 168 TEFDRQAEVTRL-------LLEGISSTHVNHLRCLHEFVE 200 (220)
T ss_pred HHHHHHHHHHHH-------HHHHHHhcChHHHHHHHHHHH
Confidence 999988873322 223344443 67777776553
No 441
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.12 E-value=9.3e+02 Score=26.58 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=28.4
Q ss_pred HhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHH
Q 036820 119 RLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTIS 171 (651)
Q Consensus 119 kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLt 171 (651)
||++....+.....+-.+.+.+.+++|...-+..-..++-|-+.|+++..++.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~ 171 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLV 171 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555666666666655554443334455555555555544
No 442
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.09 E-value=1e+03 Score=28.69 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=64.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHH
Q 036820 127 IVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKR 206 (651)
Q Consensus 127 ~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd 206 (651)
---|+.+-|.++.....++=+-++..+..=+.+-+.++..+++...+...+.+.+.+..++-.++++++.-..
T Consensus 51 RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~------- 123 (655)
T KOG3758|consen 51 RRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAA------- 123 (655)
T ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-------
Confidence 3445555565555555555555544555555666777788888888888888888888887777777766544
Q ss_pred HHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 207 TLEEERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 207 ~Ae~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
.|+.+..-|+..-++..|-+.|++
T Consensus 124 ----~le~r~kii~~Fl~~fqLs~~E~~ 147 (655)
T KOG3758|consen 124 ----QLELRKKIINAFLDNFQLSSEELD 147 (655)
T ss_pred ----HHHHHHHHHHHHHHhcccChHHHH
Confidence 456666666666666666666554
No 443
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.04 E-value=1.9e+03 Score=28.12 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=95.8
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--H
Q 036820 335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVK--H 412 (651)
Q Consensus 335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~k--e 412 (651)
.+|-.+.+-++.+..|-.+++.+..+-++-.-+-.-+++.-| .+.+++.-....+..-+.|.+.+-....+.++++ .
T Consensus 725 ~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~-~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~ 803 (1072)
T KOG0979|consen 725 MRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAER-KIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQ 803 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 345556666777777777777776666665555555544433 3344444445555556677888888888888877 3
Q ss_pred HH-----------hcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHH
Q 036820 413 TL-----------GNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDL 481 (651)
Q Consensus 413 ~l-----------~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL 481 (651)
.| +++++...-....++++=+++-|+-+...+|+.. .+..+--+. =.|..|... .+||
T Consensus 804 ~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~---~~~~~n~ne-----~~vq~y~~r---~~el 872 (1072)
T KOG0979|consen 804 SLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTR---ALKFENVNE-----DAVQQYEVR---EDEL 872 (1072)
T ss_pred hHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHH---HHHHhcCCh-----HHHHHHHHH---HHHH
Confidence 33 2344444446667777777777777766666542 122211111 245555444 3566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 036820 482 KEQKEIVSSLNKELQALEKQTSKDKE 507 (651)
Q Consensus 482 ~~ekkiv~tLn~eL~al~~Q~~~d~E 507 (651)
.+...-+..+-++|+.+.+-+.-+++
T Consensus 873 ~~l~~~~~~~~~~le~i~~kl~~~ke 898 (1072)
T KOG0979|consen 873 RELETKLEKLSEDLERIKDKLSDVKE 898 (1072)
T ss_pred HHHHhhhhhhhhhHHHHHHHHhhHHH
Confidence 66666677777777777766665555
Done!