Query 036820
Match_columns 651
No_of_seqs 43 out of 45
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.6 4.6E-08 1.6E-12 113.3 9.3 97 312-408 862-958 (1184)
2 1i84_S Smooth muscle myosin he 98.5 4.3E-07 1.5E-11 105.3 11.5 11 47-57 680-690 (1184)
3 3vkg_A Dynein heavy chain, cyt 96.9 0.05 1.7E-06 70.0 21.8 80 515-608 2029-2108(3245)
4 3na7_A HP0958; flagellar bioge 96.7 0.14 4.7E-06 50.3 19.0 132 351-501 16-147 (256)
5 3na7_A HP0958; flagellar bioge 96.4 0.37 1.3E-05 47.3 19.9 153 157-314 28-183 (256)
6 3vkg_A Dynein heavy chain, cyt 96.2 0.39 1.3E-05 62.1 23.9 210 156-403 1894-2103(3245)
7 3oja_B Anopheles plasmodium-re 95.2 0.42 1.4E-05 50.4 15.9 108 102-209 454-571 (597)
8 3oja_B Anopheles plasmodium-re 94.7 0.48 1.6E-05 50.0 14.6 116 396-511 475-590 (597)
9 2fxo_A Myosin heavy chain, car 94.6 1.1 3.9E-05 40.3 14.7 112 302-413 8-119 (129)
10 2dfs_A Myosin-5A; myosin-V, in 93.1 1.5 5.3E-05 51.5 16.2 67 348-414 955-1021(1080)
11 2fxo_A Myosin heavy chain, car 92.9 5 0.00017 36.1 15.8 107 369-483 12-118 (129)
12 2efr_A General control protein 92.8 6.6 0.00023 37.1 19.6 108 361-468 26-150 (155)
13 2v71_A Nuclear distribution pr 92.5 6.4 0.00022 38.3 17.0 120 133-255 21-140 (189)
14 3ghg_A Fibrinogen alpha chain; 92.1 0.67 2.3E-05 51.2 10.7 111 270-394 51-162 (562)
15 2no2_A HIP-I, huntingtin-inter 91.2 3.1 0.00011 37.0 12.2 89 378-466 9-97 (107)
16 2dfs_A Myosin-5A; myosin-V, in 90.6 5.4 0.00018 47.0 16.9 9 49-57 660-668 (1080)
17 3o0z_A RHO-associated protein 90.4 13 0.00045 35.8 18.2 117 333-449 4-123 (168)
18 1ic2_A Tropomyosin alpha chain 89.2 1.8 6.2E-05 36.2 8.5 70 183-252 7-76 (81)
19 3ghg_A Fibrinogen alpha chain; 89.0 2.6 9E-05 46.6 11.8 45 130-174 58-102 (562)
20 3u1c_A Tropomyosin alpha-1 cha 87.9 4.1 0.00014 35.5 10.2 74 179-252 6-79 (101)
21 3u59_A Tropomyosin beta chain; 87.6 4.5 0.00015 35.0 10.2 73 179-251 6-78 (101)
22 3u1c_A Tropomyosin alpha-1 cha 86.5 15 0.00052 31.9 13.0 12 218-229 87-98 (101)
23 1deq_A Fibrinogen (alpha chain 86.2 8.7 0.0003 41.1 13.3 96 131-226 62-157 (390)
24 2efr_A General control protein 85.2 26 0.00089 33.1 18.5 100 135-234 48-150 (155)
25 3ol1_A Vimentin; structural ge 84.8 13 0.00044 33.2 12.0 92 313-418 19-110 (119)
26 3u59_A Tropomyosin beta chain; 84.7 19 0.00064 31.1 13.1 73 158-230 20-99 (101)
27 3tnu_B Keratin, type II cytosk 81.7 27 0.00091 31.2 12.8 45 363-407 29-73 (129)
28 3hnw_A Uncharacterized protein 81.6 4.7 0.00016 37.2 8.0 58 342-399 75-132 (138)
29 3tnu_A Keratin, type I cytoske 79.9 23 0.00079 31.8 11.8 48 362-409 30-77 (131)
30 2ocy_A RAB guanine nucleotide 79.8 32 0.0011 32.6 13.1 67 542-621 79-145 (154)
31 1m1j_B Fibrinogen beta chain; 79.7 27 0.00092 38.0 14.3 6 91-96 84-89 (464)
32 4h22_A Leucine-rich repeat fli 77.7 4.1 0.00014 36.6 6.0 87 315-415 3-89 (103)
33 3mq9_A Bone marrow stromal ant 77.1 40 0.0014 34.8 14.2 100 133-243 370-469 (471)
34 3nmd_A CGMP dependent protein 76.9 2.5 8.7E-05 35.8 4.3 41 205-245 21-61 (72)
35 3bas_A Myosin heavy chain, str 76.2 15 0.00051 31.3 9.0 29 379-407 58-86 (89)
36 3oja_A Leucine-rich immune mol 76.1 30 0.001 35.8 13.0 129 131-259 323-477 (487)
37 3oja_A Leucine-rich immune mol 75.7 47 0.0016 34.4 14.3 131 349-479 324-470 (487)
38 2e7s_A RAB guanine nucleotide 75.2 4.5 0.00015 37.7 5.9 48 573-620 85-132 (135)
39 3o0z_A RHO-associated protein 73.1 68 0.0023 30.9 20.0 139 108-264 10-155 (168)
40 2eqb_B RAB guanine nucleotide 72.6 12 0.0004 33.3 7.6 48 542-602 47-94 (97)
41 3mq7_A Bone marrow stromal ant 69.9 25 0.00085 32.4 9.2 67 168-244 32-98 (121)
42 1x79_B RAB GTPase binding effe 69.3 20 0.00068 32.5 8.5 94 181-291 5-100 (112)
43 1ic2_A Tropomyosin alpha chain 69.3 48 0.0016 27.5 11.4 63 153-215 12-74 (81)
44 3edu_A Beta-I spectrin, spectr 69.0 71 0.0024 29.4 17.3 123 173-301 79-206 (218)
45 2no2_A HIP-I, huntingtin-inter 68.8 63 0.0021 28.7 11.6 34 160-193 7-40 (107)
46 2xnx_M M protein, M1-BC1; cell 68.8 16 0.00054 34.6 8.0 78 315-410 11-99 (146)
47 3nmd_A CGMP dependent protein 68.6 6.1 0.00021 33.5 4.7 49 214-262 16-64 (72)
48 2v71_A Nuclear distribution pr 64.9 1.1E+02 0.0037 29.9 20.2 119 116-237 29-157 (189)
49 3tnu_A Keratin, type I cytoske 63.7 26 0.00089 31.4 8.2 86 265-361 42-127 (131)
50 1m1j_A Fibrinogen alpha subuni 63.1 1.3E+02 0.0045 33.1 14.6 42 131-172 60-101 (491)
51 2ap3_A Conserved hypothetical 62.5 55 0.0019 32.1 10.7 113 153-295 58-189 (199)
52 3swk_A Vimentin; cytoskeleton, 61.6 34 0.0012 29.1 8.0 82 316-411 2-83 (86)
53 3trt_A Vimentin; cytoskeleton, 61.0 65 0.0022 26.1 9.9 66 135-200 8-74 (77)
54 2v66_B Nuclear distribution pr 60.8 96 0.0033 28.0 14.9 14 225-238 92-105 (111)
55 2zqm_A Prefoldin beta subunit 60.6 74 0.0025 26.9 10.1 86 154-242 6-102 (117)
56 1m1j_B Fibrinogen beta chain; 60.6 91 0.0031 34.0 13.0 58 159-216 105-162 (464)
57 1x79_B RAB GTPase binding effe 60.1 88 0.003 28.4 10.8 95 357-464 7-104 (112)
58 2oqq_A Transcription factor HY 59.3 22 0.00076 27.5 5.8 38 379-416 5-42 (42)
59 3ol1_A Vimentin; structural ge 58.0 1E+02 0.0035 27.4 13.3 93 127-230 11-103 (119)
60 1ci6_A Transcription factor AT 56.2 29 0.00099 27.9 6.4 41 375-415 21-61 (63)
61 3htk_A Structural maintenance 55.4 48 0.0016 25.6 7.4 40 160-199 4-43 (60)
62 3i00_A HIP-I, huntingtin-inter 54.4 73 0.0025 28.9 9.4 65 336-410 16-80 (120)
63 1fxk_A Prefoldin; archaeal pro 53.0 1E+02 0.0034 25.8 9.7 84 158-244 5-99 (107)
64 1deq_A Fibrinogen (alpha chain 53.0 1.3E+02 0.0045 32.3 12.4 60 156-215 62-121 (390)
65 2nrj_A HBL B protein; enteroto 52.7 2.1E+02 0.0073 29.5 16.4 168 127-300 95-329 (346)
66 2eqb_B RAB guanine nucleotide 52.2 1.3E+02 0.0044 26.8 12.4 58 358-415 7-64 (97)
67 3hd7_B Syntaxin-1A; membrane p 51.8 1.2E+02 0.0042 26.4 11.5 54 158-211 32-85 (109)
68 3a7p_A Autophagy protein 16; c 51.0 57 0.002 31.0 8.4 84 317-416 38-121 (152)
69 1wt6_A Myotonin-protein kinase 50.2 82 0.0028 27.3 8.5 61 343-410 11-71 (81)
70 3tnu_B Keratin, type II cytosk 49.9 77 0.0026 28.2 8.8 49 161-209 15-63 (129)
71 2ch7_A Methyl-accepting chemot 49.8 1.8E+02 0.0062 27.8 31.9 27 239-265 115-141 (309)
72 2nps_B Syntaxin 13, vesicle-as 48.6 94 0.0032 25.0 8.3 47 159-205 18-64 (71)
73 3ghg_C Fibrinogen gamma chain; 47.7 1.9E+02 0.0066 31.1 12.8 49 154-202 24-72 (411)
74 1jcd_A Major outer membrane li 46.5 76 0.0026 25.3 7.2 41 159-199 9-49 (52)
75 1n7s_B Syntaxin 1A; neuronal s 46.1 1.1E+02 0.0038 24.4 8.3 43 159-201 24-66 (68)
76 1gl2_B Syntaxin 7; membrane pr 45.0 1.2E+02 0.004 24.2 8.3 44 159-202 21-64 (65)
77 3cve_A Homer protein homolog 1 44.4 1.2E+02 0.004 25.7 8.4 50 381-430 4-53 (72)
78 2zqm_A Prefoldin beta subunit 43.9 67 0.0023 27.2 7.2 82 210-295 6-104 (117)
79 1jth_B Syntaxin 1A; coiled-coi 42.6 1.3E+02 0.0043 24.6 8.3 51 159-209 22-72 (77)
80 3b5n_B Protein SSO1; snare com 41.8 1.3E+02 0.0046 24.0 8.3 45 159-203 22-66 (69)
81 2q6q_A Spindle POLE BODY compo 41.6 1.2E+02 0.0041 25.8 8.0 58 172-236 7-64 (74)
82 3lay_A Zinc resistance-associa 41.3 82 0.0028 30.1 8.0 77 62-149 25-105 (175)
83 3ni0_A Bone marrow stromal ant 41.2 1.5E+02 0.0052 26.5 9.0 65 166-237 23-87 (99)
84 3bas_A Myosin heavy chain, str 40.4 1.7E+02 0.0058 24.8 10.7 73 370-457 14-86 (89)
85 2b9c_A Striated-muscle alpha t 40.1 2.3E+02 0.0079 26.3 13.1 81 158-238 42-122 (147)
86 1m1j_C Fibrinogen gamma chain; 38.4 3.2E+02 0.011 29.2 12.8 10 112-121 39-48 (409)
87 3rkg_A Magnesium transporter M 38.3 2E+02 0.0069 28.9 10.7 120 122-241 127-251 (261)
88 4h22_A Leucine-rich repeat fli 37.7 1.6E+02 0.0054 26.5 8.7 66 154-219 23-88 (103)
89 1jth_B Syntaxin 1A; coiled-coi 37.7 1.6E+02 0.0056 23.9 10.2 54 161-214 10-63 (77)
90 3swk_A Vimentin; cytoskeleton, 37.6 1.9E+02 0.0065 24.5 10.1 47 155-201 15-61 (86)
91 3hd7_B Syntaxin-1A; membrane p 37.3 1.5E+02 0.0052 25.8 8.5 54 161-214 21-74 (109)
92 3thf_A Protein shroom; coiled- 37.1 3.1E+02 0.011 26.9 14.0 121 475-602 32-180 (190)
93 2b9c_A Striated-muscle alpha t 35.7 2.7E+02 0.0092 25.8 15.0 73 162-234 74-146 (147)
94 3a7p_A Autophagy protein 16; c 35.4 1.8E+02 0.0061 27.7 9.1 80 335-427 68-147 (152)
95 1dkg_A Nucleotide exchange fac 35.2 1.6E+02 0.0056 28.3 9.1 62 379-443 44-106 (197)
96 1sfc_B Protein (syntaxin 1A), 35.2 1.9E+02 0.0063 24.0 8.3 45 159-203 33-77 (83)
97 4egx_A Kinesin-like protein KI 35.2 70 0.0024 30.3 6.4 31 114-144 8-38 (184)
98 1u4q_A Spectrin alpha chain, b 34.1 3.1E+02 0.011 26.0 26.8 26 277-302 183-208 (322)
99 1t2k_D Cyclic-AMP-dependent tr 33.7 92 0.0032 24.5 5.9 38 377-414 22-59 (61)
100 1vcs_A Vesicle transport throu 33.5 1.1E+02 0.0039 26.4 7.0 88 201-298 10-97 (102)
101 4fla_A Regulation of nuclear P 32.9 2.5E+02 0.0086 26.2 9.7 63 130-192 83-145 (152)
102 2wt7_A Proto-oncogene protein 32.9 95 0.0032 24.7 5.9 39 377-415 23-61 (63)
103 4ani_A Protein GRPE; chaperone 32.5 2.4E+02 0.0084 27.7 9.9 65 379-443 61-126 (213)
104 3cvf_A Homer-3, homer protein 32.0 1.4E+02 0.005 25.5 7.2 48 382-429 11-58 (79)
105 2v4h_A NF-kappa-B essential mo 31.9 2.8E+02 0.0096 25.2 9.4 73 315-391 25-97 (110)
106 3jsv_C NF-kappa-B essential mo 31.9 1.3E+02 0.0046 26.6 7.1 88 316-407 4-91 (94)
107 1fxk_A Prefoldin; archaeal pro 31.9 54 0.0019 27.4 4.6 80 212-295 3-99 (107)
108 3b5n_B Protein SSO1; snare com 30.0 2.1E+02 0.0073 22.8 10.2 54 161-214 10-63 (69)
109 2nps_B Syntaxin 13, vesicle-as 29.8 2.2E+02 0.0074 22.9 9.5 54 161-214 6-59 (71)
110 1m1j_A Fibrinogen alpha subuni 29.0 4.9E+02 0.017 28.8 12.3 39 91-133 49-87 (491)
111 3brv_B NF-kappa-B essential mo 28.3 2E+02 0.0069 24.3 7.3 66 366-431 4-69 (70)
112 4e61_A Protein BIM1; EB1-like 28.3 1.5E+02 0.0052 26.7 7.0 50 93-143 1-53 (106)
113 2dq0_A Seryl-tRNA synthetase; 27.8 2.9E+02 0.0098 29.6 10.3 31 384-414 31-61 (455)
114 3htk_A Structural maintenance 27.5 2.1E+02 0.0071 22.0 7.7 35 164-198 15-49 (60)
115 3pdy_A Plectin; cytoskeleton, 27.4 3.7E+02 0.013 24.8 12.4 19 278-296 180-198 (210)
116 1gl2_B Syntaxin 7; membrane pr 27.4 2.3E+02 0.0079 22.4 9.2 53 162-214 10-62 (65)
117 2c5k_T Syntaxin TLG1, T-snare 27.1 1.8E+02 0.006 25.2 7.1 14 163-176 12-25 (95)
118 1ez3_A Syntaxin-1A; three heli 27.0 2.9E+02 0.01 23.5 11.8 28 158-185 9-36 (127)
119 1n7s_B Syntaxin 1A; neuronal s 26.4 2.4E+02 0.0084 22.4 10.1 54 161-214 12-65 (68)
120 3a7o_A Autophagy protein 16; c 26.3 72 0.0025 27.2 4.3 56 226-290 20-75 (75)
121 3a6m_A Protein GRPE, HSP-70 co 26.3 39 0.0013 32.2 3.0 67 377-443 19-86 (177)
122 2p22_C Protein SRN2; endosome, 25.9 4.5E+02 0.015 25.3 11.7 24 434-457 128-151 (192)
123 4afl_A P29ING4, inhibitor of g 25.9 3E+02 0.01 23.3 9.5 38 210-247 65-103 (104)
124 3viq_B Mating-type switching p 25.9 1.3E+02 0.0045 26.1 5.9 63 106-168 3-69 (85)
125 1d7m_A Cortexillin I; coiled-c 25.3 3.6E+02 0.012 24.0 10.0 82 165-253 1-82 (101)
126 1l4a_C S-SNAP25 fusion protein 25.2 2.5E+02 0.0084 24.0 7.5 71 392-462 10-80 (83)
127 2lw1_A ABC transporter ATP-bin 25.0 3E+02 0.01 22.9 8.2 27 103-129 21-47 (89)
128 3l4q_C Phosphatidylinositol 3- 24.9 4E+02 0.014 25.5 9.7 95 196-291 10-126 (170)
129 3m9b_A Proteasome-associated A 24.5 25 0.00087 35.6 1.5 76 541-621 23-98 (251)
130 3mq7_A Bone marrow stromal ant 24.2 4.3E+02 0.015 24.4 13.6 78 150-237 35-112 (121)
131 1l8d_A DNA double-strand break 24.0 3.3E+02 0.011 23.0 9.4 14 313-326 9-22 (112)
132 1jcd_A Major outer membrane li 23.9 2.7E+02 0.0094 22.1 7.1 29 164-192 7-35 (52)
133 2xnx_M M protein, M1-BC1; cell 23.7 3.1E+02 0.011 26.0 8.5 35 490-524 98-132 (146)
134 3ghg_B Fibrinogen beta chain; 23.5 4.4E+02 0.015 28.9 10.8 46 156-201 83-128 (461)
135 1cun_A Protein (alpha spectrin 23.4 3.9E+02 0.014 23.7 17.9 25 278-302 181-205 (213)
136 4emc_A Monopolin complex subun 22.9 3.1E+02 0.011 26.9 8.6 27 154-180 27-53 (190)
137 1sfc_B Protein (syntaxin 1A), 22.8 3.2E+02 0.011 22.5 10.2 53 162-214 22-74 (83)
138 1n7s_C SNAP-25A; neuronal snar 22.6 3.4E+02 0.012 22.6 9.2 66 393-458 7-72 (79)
139 3r2p_A Apolipoprotein A-I; amp 22.6 4.3E+02 0.015 24.5 9.3 94 336-432 72-171 (185)
140 3i00_A HIP-I, huntingtin-inter 22.4 4.1E+02 0.014 24.0 8.8 35 386-420 35-69 (120)
141 3s4r_A Vimentin; alpha-helix, 22.3 2.4E+02 0.0081 24.2 6.9 67 223-295 22-90 (93)
142 1f5n_A Interferon-induced guan 22.0 8.3E+02 0.029 27.0 14.2 113 111-239 459-582 (592)
143 3swy_A Cyclic nucleotide-gated 22.0 2.4E+02 0.0081 22.0 6.1 43 381-423 2-44 (46)
144 4abx_A DNA repair protein RECN 21.3 3.3E+02 0.011 25.0 8.2 15 158-172 67-81 (175)
145 1s94_A S-syntaxin; three helix 21.3 4.7E+02 0.016 23.8 10.5 26 158-183 40-65 (180)
146 2ap3_A Conserved hypothetical 21.0 5.9E+02 0.02 24.9 12.8 131 385-527 41-189 (199)
147 3m91_A Proteasome-associated A 20.7 53 0.0018 26.0 2.3 30 587-616 19-48 (51)
148 1t3j_A Mitofusin 1; coiled coi 20.1 2.4E+02 0.0083 24.9 6.6 54 336-389 37-90 (96)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.64 E-value=4.6e-08 Score=113.30 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 312 KKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 312 ke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
.+.++.+++++|...-.....-...+..|..++..++.-|..+......+...+...+..+.....++.++..++++...
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee 941 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333323333334444444444444444444444444444444444444444555555555555555
Q ss_pred hhhHHHHHHHHHHHHHH
Q 036820 392 SCADLETEISRIRAEFA 408 (651)
Q Consensus 392 ~~~~L~~qiskl~~E~~ 408 (651)
....++.++.++..+..
T Consensus 942 ~l~el~~e~~~le~el~ 958 (1184)
T 1i84_S 942 RSQQLQAEKKKMQQQML 958 (1184)
T ss_dssp C----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444444
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.48 E-value=4.3e-07 Score=105.31 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=7.1
Q ss_pred ceeccCCCCCC
Q 036820 47 AMASMRPGDPK 57 (651)
Q Consensus 47 ~~a~~~~~~~~ 57 (651)
.+-|+.|-+.+
T Consensus 680 fvRCIkPN~~k 690 (1184)
T 1i84_S 680 FVRCIIPNHEK 690 (1184)
T ss_dssp ECCEECCCSSC
T ss_pred ceeeeCCCCcC
Confidence 34677777655
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.86 E-value=0.05 Score=69.96 Aligned_cols=80 Identities=10% Similarity=0.317 Sum_probs=51.7
Q ss_pred hHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhh
Q 036820 515 DLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSK 594 (651)
Q Consensus 515 dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~k 594 (651)
.|.++..-|++++...-.|-.+++.+......|++|- ..++.-++-|..||..||.|++.-...++
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~--------------~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTES--------------SKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 3444444455555554455555554444333333322 24566788899999999999999999999
Q ss_pred hhHHHHhhcccchh
Q 036820 595 KLEEELASAKGEIL 608 (651)
Q Consensus 595 kLEeELAsAKGEiL 608 (651)
.|+.++..-=|.+|
T Consensus 2095 ~l~~~~~~L~GD~L 2108 (3245)
T 3vkg_A 2095 NFNTQMSTVVGDVV 2108 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHH
Confidence 99988877767654
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.67 E-value=0.14 Score=50.33 Aligned_cols=132 Identities=17% Similarity=0.263 Sum_probs=93.6
Q ss_pred HHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820 351 LDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG 430 (651)
Q Consensus 351 Ld~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~ 430 (651)
+|.++..+.+....+ ...+.+...++..+...+...+.--.+++.+|.++..++..++..+.+.=.
T Consensus 16 lD~~i~~l~~~~~~l---p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~----------- 81 (256)
T 3na7_A 16 LDKEIDSLEPLIREK---RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK----------- 81 (256)
T ss_dssp HHHHHHHTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455555554444444 566777777778888888888888888888888888888777766543221
Q ss_pred hHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036820 431 ELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKELQALEKQ 501 (651)
Q Consensus 431 El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~eL~al~~Q 501 (651)
-|.++ ++..|++..++++.........|.++++++..++|....++..-...+..+..+|..+...
T Consensus 82 ~l~~v-----~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 82 KMSEI-----KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHC-----SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 2678889999999999999999999999999999888777776666666666666554443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.37 E-value=0.37 Score=47.32 Aligned_cols=153 Identities=8% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH--hhhhHHhhhhhhhhhhhhhh
Q 036820 157 QLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ--KLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 157 QSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee--Kl~~i~~Lq~kinLLs~e~~ 234 (651)
..|-..|..+...+..+...+..++.-+.++..++.+++..+......++..+..|.. .-..++.|+..|..+..++.
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777777777777777777777777777777766643 12345566666666666666
Q ss_pred hhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhch-hhhhhhhhhhhhHhH
Q 036820 235 EKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSS-ENETASNAKRLREKK 313 (651)
Q Consensus 235 ~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ss-E~~aa~da~lL~eke 313 (651)
+-|+.|.++.-.+..++.++..+...+... -..|...+.+....+.++.++...+..-. +..+..|..||..-+
T Consensus 108 ~lE~eile~~e~ie~~~~~l~~~~~~l~~~-----~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Ye 182 (256)
T 3na7_A 108 QANREIENLQNEIKRKSEKQEDLKKEMLEL-----EKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYE 182 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666666666666666666655554443322 22222333334444444444444443322 333445666665544
Q ss_pred H
Q 036820 314 E 314 (651)
Q Consensus 314 ~ 314 (651)
.
T Consensus 183 r 183 (256)
T 3na7_A 183 R 183 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.22 E-value=0.39 Score=62.05 Aligned_cols=210 Identities=12% Similarity=0.137 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELRE 235 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~ 235 (651)
-.++++.++.-..-+..-++++....+-.+.+=.++..+...|..........+.+|.+|=...+.+=.+|.-=+++...
T Consensus 1894 P~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~ 1973 (3245)
T 3vkg_A 1894 PRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI 1973 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888777777777777777777777777777777777777766666677777777766666665566555555555
Q ss_pred hhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHH
Q 036820 236 KDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEE 315 (651)
Q Consensus 236 Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~ 315 (651)
+...++.....++.++.+.+ ..++++++.|++.+=- .-|.++
T Consensus 1974 ~k~~v~~~~~~~~~~~~ei~-------------------~~k~~~e~dL~~A~Pa-------------------~Pkr~~ 2015 (3245)
T 3vkg_A 1974 KQKDARELQVQLDVRNKEIA-------------------VQKVKAYADLEKAEPT-------------------GPLREE 2015 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHCC--------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhcCCC-------------------ChHHHH
Confidence 54444444333333333222 2233333333322111 667889
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhH
Q 036820 316 LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCAD 395 (651)
Q Consensus 316 l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~ 395 (651)
|.+++++|..|-..-.+-+..|+++..+++.+++-++.=+.....|+.+++.++..|..+..=++.|+-|-..=...-..
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 99999999999988888899999999999999999888888888888888888888877777777777666655555555
Q ss_pred HHHHHHHH
Q 036820 396 LETEISRI 403 (651)
Q Consensus 396 L~~qiskl 403 (651)
|..++..|
T Consensus 2096 l~~~~~~L 2103 (3245)
T 3vkg_A 2096 FNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555544
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.24 E-value=0.42 Score=50.44 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=65.4
Q ss_pred hhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHhHHHhHHHHHHHHHHHHhHH
Q 036820 102 TQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQ----------EQRTKQLKSAKEEQQLLMNKLNSANTTIS 171 (651)
Q Consensus 102 ~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQ----------eeVkkLLKk~kEeeQSLlDQLnSLnsTLt 171 (651)
-+.|.......|..++.++...++++..+.+.++.+....+ ..+.+..+...+..+.+...++.....+.
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34466667788888899999999999999999888877766 55555555555555555555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820 172 GLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209 (651)
Q Consensus 172 SL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae 209 (651)
.....+++.++-++.+...++..+..+.........+.
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 55555554444444444444444444443333333333
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.71 E-value=0.48 Score=49.99 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhH
Q 036820 396 LETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAE 475 (651)
Q Consensus 396 L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E 475 (651)
.+..+.....++.+-++.++...++.....+.+..++..+++..++-..+++..-.+...-.+..+.+++|....=++.+
T Consensus 475 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 34444445555555555555444444444455666666666666666666666555555555666666677776666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHh
Q 036820 476 ATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKS 511 (651)
Q Consensus 476 ~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~ 511 (651)
...+.+.+-++=+..+..+++.|++.+..-..+|+.
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~ 590 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRV 590 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 666666666666777778888888888877777765
No 9
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.55 E-value=1.1 Score=40.26 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=64.1
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhH
Q 036820 302 TASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASD 381 (651)
Q Consensus 302 aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~ 381 (651)
++...+-+..++.++.+|+++|...-..-..=..-...|.+++.++...|..|-.+....-+........-...-..+.+
T Consensus 8 ~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788999999999997665555444556677777777777777666555433322222222222222234455
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036820 382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHT 413 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~ 413 (651)
+...|++-...|..|...-.+++.+..+.+..
T Consensus 88 l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 88 MNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.13 E-value=1.5 Score=51.46 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 348 RKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 348 r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
...+..|+..+++=-++++..+..+....+++..|.+++++.+...+.+..+...+......+++.|
T Consensus 955 ~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333344444444455555555555544444444444444433333333333
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.89 E-value=5 Score=36.08 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=84.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHh
Q 036820 369 QETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQN 448 (651)
Q Consensus 369 qe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~ 448 (651)
.+-+...-.++.+|.+.|........+|+.+..++..|-+.....|+.- ..+..+..-..+-|.+.+.+|+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E--------~~~l~e~EE~~~~L~~~k~eLe~ 83 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE--------QDNLADAEERCDQLIKNKIQLEA 83 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556666677777888888888888888888888888888888777631 22334556667778888889999
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHH
Q 036820 449 VSHELEATAENRDSLRKELVNIYKKAEATANDLKE 483 (651)
Q Consensus 449 ~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ 483 (651)
--+++.+-.+.-..-+.+|....||++....+|+.
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888899999999999888877765
No 12
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.81 E-value=6.6 Score=37.14 Aligned_cols=108 Identities=26% Similarity=0.357 Sum_probs=68.4
Q ss_pred hHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHH--------------HHHHHHHHHHHHHHHH---HhcchHHHHh
Q 036820 361 LKYELQITQETLETTRNEASDLEKQLKQSKDSCADLE--------------TEISRIRAEFAEVKHT---LGNSLDEAKR 423 (651)
Q Consensus 361 L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~--------------~qiskl~~E~~e~ke~---l~~~l~eak~ 423 (651)
+-..|.-+++-+..+-..+..|+++|..+-+.++.|+ .+|-.|+.-+.++-.. -.|++..-+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666555555443 3333344333333221 1133333333
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHH
Q 036820 424 SGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELV 468 (651)
Q Consensus 424 ~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~ 468 (651)
.-.-|=++|...|+-.+..+++|+.|-++|.+.....+.|+.|+-
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 344566788888999999999999999999998888888887754
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.52 E-value=6.4 Score=38.34 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 133 DFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 133 dFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
.|-.++.+++.+...-..++++-++-|=..|..+.++...+...+.....-++..+.+.....+. +...+-.++.++
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~el 97 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDL 97 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 35556666667766766778888888989999999999999988888888888888777666554 344566777777
Q ss_pred HHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 036820 213 KQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELK 255 (651)
Q Consensus 213 eeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~ 255 (651)
..--...+.|+.+|-=|-+..+|-|-..|..++||.--|.-|+
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 7777888999999999999999999999999999877665443
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.12 E-value=0.67 Score=51.18 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=84.8
Q ss_pred hhhhHhcc-cchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHH
Q 036820 270 ASSLLVER-DDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEKDDLR 348 (651)
Q Consensus 270 v~sL~~ek-~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r 348 (651)
++.|+... -++...|+.|..+|.++. +...|+.-+ ..++-+.|...+..+..|..++-+++.||+.-.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdls-----KnsKdseqy------~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrI 119 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQ-----KNNKDSHSL------TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRI 119 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHHHHH------HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHH-----hhchhHHHH------HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 56665544 367889999999999992 333444433 456666676677777778888888888888888
Q ss_pred HHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 349 KMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 349 ~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
.-|..+|.+.. ..|++.|..|++-|.+..+|+...+--.+.|+
T Consensus 120 qyLKekVdnQl---snIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 120 EVLKRKVIEKV---QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888887766 55678888999999999999999888888885
No 15
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=91.22 E-value=3.1 Score=37.00 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 036820 378 EASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATA 457 (651)
Q Consensus 378 e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~ 457 (651)
.-++..++|.-++..+.+++..+..|..++.+++..-..+..+.-.+-+.|=.||+.-++=|...++.++.+...=...+
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~ 88 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWA 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999997777777777777777778888877766667766666666544444
Q ss_pred HhhhhhhHH
Q 036820 458 ENRDSLRKE 466 (651)
Q Consensus 458 e~rd~L~kE 466 (651)
...+.+++|
T Consensus 89 ~~~~~l~~E 97 (107)
T 2no2_A 89 AEFAELEKE 97 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.63 E-value=5.4 Score=47.01 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=5.4
Q ss_pred eccCCCCCC
Q 036820 49 ASMRPGDPK 57 (651)
Q Consensus 49 a~~~~~~~~ 57 (651)
=|+-|-+.+
T Consensus 660 RCIkPN~~k 668 (1080)
T 2dfs_A 660 RCIKPNDFK 668 (1080)
T ss_dssp EEECCCSSC
T ss_pred EEecCCCCC
Confidence 466666644
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.43 E-value=13 Score=35.76 Aligned_cols=117 Identities=11% Similarity=0.188 Sum_probs=64.6
Q ss_pred chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 036820 333 NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKH 412 (651)
Q Consensus 333 ~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke 412 (651)
....|..|.+.++++...|-.|.+++-.||-..--..-++...=.-+.+|...+..+...+..|+.++..|+..+..-+.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999988875433333333333344555555555555666666666666666665554
Q ss_pred HHhcchH---HHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820 413 TLGNSLD---EAKRSGEVLAGELFAAKEVLKKASEELQNV 449 (651)
Q Consensus 413 ~l~~~l~---eak~~~~~Ls~El~s~ke~l~k~~eeL~~~ 449 (651)
..+..-+ +...--..|-.||..+|+-+.++..+....
T Consensus 84 ~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L 123 (168)
T 3o0z_A 84 DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333221 222233344445555555555444444433
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.19 E-value=1.8 Score=36.18 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820 183 FIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET 252 (651)
Q Consensus 183 tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~ 252 (651)
=+..++...+.+..++..++.....++......-+.|..|+-||.+|-.++..-++.+...+..|...+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555556666666666778889999999999998888888888888776654
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.01 E-value=2.6 Score=46.62 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHH
Q 036820 130 LEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLG 174 (651)
Q Consensus 130 lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~ 174 (651)
-+.||-++|-++..+++++-+..++.++-.....+.++.++....
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444443344444444444444444444333
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.90 E-value=4.1 Score=35.48 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820 179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET 252 (651)
Q Consensus 179 nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~ 252 (651)
.|+.-+..++...+.+...+..++..+..++.....+=+.|..||-||.+|-.++..-+..+...+..|-..+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666667777777777788889999999988888877777777666655544
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.56 E-value=4.5 Score=34.99 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhH
Q 036820 179 NEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKE 251 (651)
Q Consensus 179 nek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE 251 (651)
.|+.-+..++...+.+...+..++..+..++......-+.|..|+.||..|..++..-++.+...+..|-..+
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666677777777777788888999999999999998888888887765554
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.50 E-value=15 Score=31.94 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=6.9
Q ss_pred hHHhhhhhhhhh
Q 036820 218 RIEGLQDKINLL 229 (651)
Q Consensus 218 ~i~~Lq~kinLL 229 (651)
.+..|+-||-||
T Consensus 87 ev~~L~Rriqll 98 (101)
T 3u1c_A 87 EVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455566666655
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.20 E-value=8.7 Score=41.10 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH
Q 036820 131 EKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEE 210 (651)
Q Consensus 131 DedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~ 210 (651)
+.+|..++-.+...+.++-+...+..+-.....+-++.+++...+.=..+....++++..|.-++.+|..---.|..++.
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35666666666666666666666666666666666666666666665666666666666666666666554446666666
Q ss_pred HHHHhhhhHHhhhhhh
Q 036820 211 ERKQKLDRIEGLQDKI 226 (651)
Q Consensus 211 eLeeKl~~i~~Lq~ki 226 (651)
-|+.-+-.|.-|.-+|
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655555
No 24
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.16 E-value=26 Score=33.14 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHH---HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 135 ESKLQNEQEQRTKQL---KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 135 EkRLKevQeeVkkLL---Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
+..|+.+..-++.|- .+..+-...+-+++..+...+...-.+-.-+...|..+...|+++...+..+..-...+..+
T Consensus 48 EeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~e 127 (155)
T 2efr_A 48 EEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 22344456778888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhhHHhhhhhhhhhhhhhh
Q 036820 212 RKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 212 LeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
|..-|..|..++.+.--|.-+|+
T Consensus 128 Ld~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 128 MKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHH
Confidence 88888888887777666665554
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.83 E-value=13 Score=33.22 Aligned_cols=92 Identities=15% Similarity=0.281 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhh
Q 036820 313 KEELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDS 392 (651)
Q Consensus 313 e~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~ 392 (651)
+..|..|..++..+-.+-.+=..-|..+.-..++.|.-.++|+..+..+ -+++..|-+.+|...-.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~--------------E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA--------------ENTLQSFRQDVDNASLA 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------------HHHHHHhhhcccHHHHH
Confidence 4567777777766666554444455666677788888888887644332 35677788888998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcch
Q 036820 393 CADLETEISRIRAEFAEVKHTLGNSL 418 (651)
Q Consensus 393 ~~~L~~qiskl~~E~~e~ke~l~~~l 418 (651)
..+|+.+|.-|++|++=.|......|
T Consensus 85 r~dLE~~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776655433
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.74 E-value=19 Score=31.14 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh-------hhhHHhhhhhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK-------LDRIEGLQDKINLLS 230 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK-------l~~i~~Lq~kinLLs 230 (651)
..+|+...+...+.............+..+..++..+...+..++.....+...|++. =..+..|+-||-||-
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444444444444444444444444444444333333322 124666777776663
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.68 E-value=27 Score=31.22 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 036820 363 YELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEF 407 (651)
Q Consensus 363 ~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~ 407 (651)
+.++.++.-+...|..+..|.-+|+..+..|..|+..|......+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666666666666655554444433
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.56 E-value=4.7 Score=37.16 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHH
Q 036820 342 QEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETE 399 (651)
Q Consensus 342 ~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~q 399 (651)
.+.+.++..++.--..+..|||+|-.++..++..+.+..+|.++++....-..+|+++
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566665667778999999999999998888888888877766666555544
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.93 E-value=23 Score=31.76 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=20.7
Q ss_pred HHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 036820 362 KYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAE 409 (651)
Q Consensus 362 ~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e 409 (651)
.+.++.++.-+...|..+..|.-+|+..+..|.-|+..|......+..
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666655555555544444433
No 30
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.76 E-value=32 Score=32.58 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=52.5
Q ss_pred hccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCcc
Q 036820 542 SQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTLV 621 (651)
Q Consensus 542 s~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~~ 621 (651)
+....++.|-|=|+.||=+ .|+++|--=-.+|..++.|..+|++.|+-+.|=|=.|.-|+..-+...
T Consensus 79 ~~~~~ie~ElEeLTasLFe-------------EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFD-------------EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp THHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777754 466666666889999999999999999999998888888888777766
No 31
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.65 E-value=27 Score=38.03 Aligned_cols=6 Identities=0% Similarity=-0.141 Sum_probs=2.8
Q ss_pred chhhHH
Q 036820 91 RSGVLG 96 (651)
Q Consensus 91 ~sGvlg 96 (651)
+.|++.
T Consensus 84 tC~l~D 89 (464)
T 1m1j_B 84 GCELQT 89 (464)
T ss_dssp TTHHHH
T ss_pred ccHHHH
Confidence 455533
No 32
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.73 E-value=4.1 Score=36.61 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 036820 315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCA 394 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~ 394 (651)
-|..+|||+.-|. +.+|.|-+|+-++-=. |.-||+.|.--+|++..++.+..+...+++..++.|.
T Consensus 3 sL~EvEEKyrKAM-------VsnAQLDNEKsal~Yq-------VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 3 SLAEVEEKYKKAM-------VSNAQLDNEKTNFMYQ-------VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp -----CCTHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------HHHHHhccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667766654 4455555555444333 3458899999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 036820 395 DLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 395 ~L~~qiskl~~E~~e~ke~l~ 415 (651)
.|..++..++..+.+--+-++
T Consensus 69 ~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 69 ILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888877777766655433333
No 33
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.11 E-value=40 Score=34.76 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 036820 133 DFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEER 212 (651)
Q Consensus 133 dFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eL 212 (651)
+-+.-|.+.+++++.++..... +...-+.-.-+...|+...+.+..++.-...|++-+--+..++. ++..+.+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~- 442 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD-----AEKAQGQ- 442 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH-----HHHHHHH-
Confidence 3455566666666666644322 22333555666777777777777888878888887777777765 2233322
Q ss_pred HHhhhhHHhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 213 KQKLDRIEGLQDKINLLSLELREKDDGVQKL 243 (651)
Q Consensus 213 eeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l 243 (651)
..|+.|..-|.-|.++|++-+..|.++
T Consensus 443 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 ----KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 266777777777777777777666654
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.90 E-value=2.5 Score=35.78 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 205 KRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSS 245 (651)
Q Consensus 205 kd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~S 245 (651)
+..++..|++|.+.|...++.|..|-.+|..|+..|++|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444444444443
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=76.25 E-value=15 Score=31.30 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEF 407 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~ 407 (651)
..+.++..........+|+.+|..+.+.+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555556666665555443
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.07 E-value=30 Score=35.82 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH---
Q 036820 131 EKDFESKLQNEQEQRTKQL--------------KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDS--- 193 (651)
Q Consensus 131 DedFEkRLKevQeeVkkLL--------------Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeq--- 193 (651)
...|...+.....-++.=+ ...+.....+...-..+...+..+....+.++....+...+++.
T Consensus 323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 402 (487)
T 3oja_A 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402 (487)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhccc
Confidence 5678877777666655522 11222333444455555555666666666666555555444443
Q ss_pred ---------HHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHh
Q 036820 194 ---------LQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNS 259 (651)
Q Consensus 194 ---------l~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~ 259 (651)
....+.+.++.....+.+....-...++.|+.|+-|-.+-..-+..++++.--++++...|+++..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 556666666666666666666666777888888888888888888888888888888888888764
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.66 E-value=47 Score=34.38 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=65.0
Q ss_pred HHHHHhhhhhhhhHHHHHhhH-HHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh----
Q 036820 349 KMLDNELGNVKNLKYELQITQ-ETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR---- 423 (651)
Q Consensus 349 ~mLd~E~~~~k~L~~~lq~Tq-e~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~---- 423 (651)
+-...|++.+..++|.==+.= +--....+++..+.++-......-..++..+++.+.+..++...++....+.+.
T Consensus 324 ~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 403 (487)
T 3oja_A 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403 (487)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCS
T ss_pred HHHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccc
Confidence 345567777777776422211 111112233444444434555556677888888888888888877766555442
Q ss_pred -----------hhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhHH
Q 036820 424 -----------SGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDSLRKELVNIYKKAEATAN 479 (651)
Q Consensus 424 -----------~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~ 479 (651)
..+......+..-....+...+++.++.+....-+..+.++|++-++=+..+.+.+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 11111111111111222233344445555555555666666666555555544443
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.23 E-value=4.5 Score=37.74 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820 573 EDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620 (651)
Q Consensus 573 eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~ 620 (651)
+.|+++|--=-.+|..++.|..+|++.|+-+.|=|=+|.-|+..-+.+
T Consensus 85 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 85 DEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888899999999999999999999998888887777655543
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=73.13 E-value=68 Score=30.85 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhH
Q 036820 108 ATDATLEYMKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQL-------KSAKEEQQLLMNKLNSANTTISGLGKELQNE 180 (651)
Q Consensus 108 a~~~tiesm~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLL-------Kk~kEeeQSLlDQLnSLnsTLtSL~keLqne 180 (651)
.++..+.-|..||+--=.+- .||+-.+.+..+.+ +-.++--..|-.+-..+...+..+...|..+
T Consensus 10 ~LekQL~E~n~kLk~EsE~~--------~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTA--------VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776332222 23333333333322 2235556667777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhh
Q 036820 181 KRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSV 260 (651)
Q Consensus 181 k~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~ 260 (651)
++.......-|..+..++.....+++.....+..=...-.-||+||+-|--+-..-+..+ --+++.|...
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~----------~~eLKalQ~~ 151 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL----------NYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHH
Confidence 888888888888888889888888888888888888888999999998865544333110 0356677777
Q ss_pred hhhh
Q 036820 261 YKQN 264 (651)
Q Consensus 261 y~qt 264 (651)
|.|-
T Consensus 152 ~eqE 155 (168)
T 3o0z_A 152 LEQE 155 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.63 E-value=12 Score=33.30 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=35.0
Q ss_pred hccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhh
Q 036820 542 SQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELAS 602 (651)
Q Consensus 542 s~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAs 602 (651)
+..+.|+.|-|=|+-||= +.|+++|--=-.+|..+++|..+|.+.|+-
T Consensus 47 ~~~~~ie~ElEeLTasLF-------------eEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLF-------------DEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555554 457777777789999999999999999863
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.93 E-value=25 Score=32.37 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 168 TTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLS 244 (651)
Q Consensus 168 sTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~ 244 (651)
..|+..++-|+....-+..++.-+..+..+|.. +.++. ...|+-|++.|.-|.+.+.|.+..+..|.
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~-----ekaq~-----q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDA-----EKAQG-----QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555542 12222 22366666777777776666666666554
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=69.34 E-value=20 Score=32.52 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhh
Q 036820 181 KRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSV 260 (651)
Q Consensus 181 k~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~ 260 (651)
..-|+.+.....+++..+++...+...++..+.+|- .+-...|+.|......-|..++.|...
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~-----------------E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSS-----------------EDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666677766666666666544443 344456777777778888899999999
Q ss_pred hhhh--hhhhhhhhhHhcccchHHHHHHHHHHH
Q 036820 261 YKQN--ELNARASSLLVERDDSKQKLEAVQKEY 291 (651)
Q Consensus 261 y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key 291 (651)
|.|+ +...++.-|...+.....+|..|+++-
T Consensus 68 fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 68 LSQAKRDVQEQMAVLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 788888888888888888888888763
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.34 E-value=48 Score=27.53 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK 215 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK 215 (651)
+.+-....+++..++..+.............+..+...|..+...+..+++....+..+|.+.
T Consensus 12 k~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 12 KLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667777777777777777777777777777777777777777777777777666654
No 44
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=69.02 E-value=71 Score=29.36 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q 036820 173 LGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKET 252 (651)
Q Consensus 173 L~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~ 252 (651)
+...+..+...++.+...+..=+..|..+. ....+..++.+=+ .-|++|-..|+.++-.--..|+.+-..+..-|.
T Consensus 79 i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~F~~~~~e~~---~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~ 154 (218)
T 3edu_A 79 IAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEIL---GLIDEKHRELPEDVGLDASTAESFHRVHTAFER 154 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHCCC-------------CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHH
Confidence 444444444555555555555455555443 3344444444322 333445555554443333444555445555555
Q ss_pred HhhhhHhhhhhhhhhhhhhhhHhc-----ccchHHHHHHHHHHHHHhhhchhhh
Q 036820 253 ELKNLNSVYKQNELNARASSLLVE-----RDDSKQKLEAVQKEYKELKLSSENE 301 (651)
Q Consensus 253 e~~nL~~~y~qt~Ln~~v~sL~~e-----k~~~~~k~~~l~key~~lk~ssE~~ 301 (651)
++......+.+ |+...+.|... ......++..|...|..|+..++.|
T Consensus 155 dL~~~~~~v~~--l~~~a~~L~~~~~~~~a~~i~~~~~~l~~~W~~L~~~~~~R 206 (218)
T 3edu_A 155 ELHLLGVQVQQ--FQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGR 206 (218)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444433 44444444332 2345567778888888887766654
No 45
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=68.83 E-value=63 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 036820 160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDS 193 (651)
Q Consensus 160 lDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeq 193 (651)
+-+..++...|+...+--.........+..++.+
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333344444444433
No 46
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=68.77 E-value=16 Score=34.60 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhHhhh--chhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhh---------hhhhHHH
Q 036820 315 ELHQLKEKLELTLDEACE--NRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTR---------NEASDLE 383 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k--~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR---------~e~s~L~ 383 (651)
.+...++.|..++...+. +.+.+.+|..+... |..+.++ +..|| ++...|+
T Consensus 11 ~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~k--------------l~~e~~i----~eas~~~~~~~~le~~~~~l~ 72 (146)
T 2xnx_M 11 ELEEKKEALELAIDQASRDYHRATALEKELEEKK--------------KALELAI----DQASQDYNRANVLEKELEAIT 72 (146)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH----HHHHHTTTTHHHHTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHH----HHHhhhhhhhhhhHhhHHHHH
Confidence 334555666777777777 56666665544322 2222222 22223 2334555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 036820 384 KQLKQSKDSCADLETEISRIRAEFAEV 410 (651)
Q Consensus 384 ~~L~~~~~~~~~L~~qiskl~~E~~e~ 410 (651)
..|+.++.....++.++.++..+..+.
T Consensus 73 rdleasr~akk~~ea~la~l~~~~~~L 99 (146)
T 2xnx_M 73 REQEINRNLLGNAKLELDQLSSEKEQL 99 (146)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 555555555555555555555544433
No 47
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.61 E-value=6.1 Score=33.49 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=41.2
Q ss_pred HhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh
Q 036820 214 QKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK 262 (651)
Q Consensus 214 eKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~ 262 (651)
|-+++|.-||+=+..-..||..|+..|+++..-|.+|+.++++|.+-++
T Consensus 16 ~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889888888999999999999999999999999999987665
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.93 E-value=1.1e+02 Score=29.90 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 036820 116 MKARLKEKEAAIVSLEKDFESKLQNEQEQRTKQLKS---AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEID 192 (651)
Q Consensus 116 m~~kL~e~Eaa~~~lDedFEkRLKevQeeVkkLLKk---~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIe 192 (651)
|+.-|.|--..=--|....|..|...+....+|-.+ .+.+-..+-+.+....+..... ......-+..+.....
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~---~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQ---VSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 333333333333445556666666666665555521 2223333333333332221111 2222333445555555
Q ss_pred HHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhh-------hhhhhhhhhh
Q 036820 193 SLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKIN-------LLSLELREKD 237 (651)
Q Consensus 193 ql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kin-------LLs~e~~~Ke 237 (651)
.+...|.+.+-..|.+++.-+-.-.+++.++.|.| +|..|+..|+
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665554 5566665544
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.74 E-value=26 Score=31.41 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred hhhhhhhhhHhcccchHHHHHHHHHHHHHhhhchhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhHhhhchhHHHhhhhhH
Q 036820 265 ELNARASSLLVERDDSKQKLEAVQKEYKELKLSSENETASNAKRLREKKEELHQLKEKLELTLDEACENRATIAKFTQEK 344 (651)
Q Consensus 265 ~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk~ssE~~aa~da~lL~eke~~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~ 344 (651)
++|..|++|-.+-+........|...-.|...--+.....=-..|...+.+|.++...+..-+.+ -+++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E-----------Yq~L 110 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE-----------YKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 56666666666655555555555554444433222211110111233344444433333222211 1344
Q ss_pred HHHHHHHHHhhhhhhhh
Q 036820 345 DDLRKMLDNELGNVKNL 361 (651)
Q Consensus 345 ~~~r~mLd~E~~~~k~L 361 (651)
=+.|--||.|+.+-.+|
T Consensus 111 l~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 111 LDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677788887766554
No 50
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.06 E-value=1.3e+02 Score=33.15 Aligned_cols=42 Identities=12% Similarity=0.376 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHH
Q 036820 131 EKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISG 172 (651)
Q Consensus 131 DedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtS 172 (651)
+.+|-.++-.+...+.++-+.+.+..+-.....+-++.+++.
T Consensus 60 erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q 101 (491)
T 1m1j_A 60 DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEG 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444333333333333333333
No 51
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=62.52 E-value=55 Score=32.11 Aligned_cols=113 Identities=12% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhh
Q 036820 153 KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLE 232 (651)
Q Consensus 153 kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e 232 (651)
.+..+.....++.+-..+..=++.|..++..++....+...+...+.++++...
T Consensus 58 ~~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~-------------------------- 111 (199)
T 2ap3_A 58 SKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK-------------------------- 111 (199)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHH--------------------------
T ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH--------------------------
Confidence 334444444455555555556666666666666666666666666665533211
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh-------------------hhhhhhhhhHhcccchHHHHHHHHHHHHH
Q 036820 233 LREKDDGVQKLSSSLQQKETELKNLNSVYKQN-------------------ELNARASSLLVERDDSKQKLEAVQKEYKE 293 (651)
Q Consensus 233 ~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt-------------------~Ln~~v~sL~~ek~~~~~k~~~l~key~~ 293 (651)
-+.+..+.+.+-.+-.-|+.|+.-|.-. +|..+|..++..-.+...+.+...++||.
T Consensus 112 ----Kkqa~~l~~~~k~RY~~~~~l~~~Y~k~l~~EKeLy~~Lk~k~~~~~~l~eki~~vN~~y~~~~~~FN~yTk~yN~ 187 (199)
T 2ap3_A 112 ----RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNK 187 (199)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223333333333333333333332 77888888888888888999999999998
Q ss_pred hh
Q 036820 294 LK 295 (651)
Q Consensus 294 lk 295 (651)
.+
T Consensus 188 ~~ 189 (199)
T 2ap3_A 188 VQ 189 (199)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 52
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.58 E-value=34 Score=29.14 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhH
Q 036820 316 LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCAD 395 (651)
Q Consensus 316 l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~ 395 (651)
|..|..|+..+-.+-..=..=|.-+.-..++.|.-.++|+..+..+- +++.-|-+.+|.+--...+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E--------------~d~~~LrkdvD~a~l~r~d 67 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE--------------NTLQSFRQDVDNASLARLD 67 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHHHHHHHH
Confidence 34555555555544443333344444556666777777766553332 4556677778888888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 036820 396 LETEISRIRAEFAEVK 411 (651)
Q Consensus 396 L~~qiskl~~E~~e~k 411 (651)
|+.+|.-|++|++=.|
T Consensus 68 LE~kvesL~eEl~fLk 83 (86)
T 3swk_A 68 LERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987554
No 53
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=61.00 E-value=65 Score=26.07 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh
Q 036820 135 ESKLQNEQEQRTKQLKS-AKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK 200 (651)
Q Consensus 135 EkRLKevQeeVkkLLKk-~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq 200 (651)
..-|.+++.+-+.++.+ -.+-+.-+-.++.+++..+..-...++..+..+.+++..|+.++..|..
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666677744 4677778888999999999999999999999999999999988887753
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.82 E-value=96 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=9.1
Q ss_pred hhhhhhhhhhhhhh
Q 036820 225 KINLLSLELREKDD 238 (651)
Q Consensus 225 kinLLs~e~~~Ke~ 238 (651)
+.-||-.||+.|+.
T Consensus 92 rnalLE~El~EKe~ 105 (111)
T 2v66_B 92 RNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44467777777664
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.63 E-value=74 Score=26.94 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh-----------hhhhHHHHHHHHHHhhhhHHhh
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK-----------FGEDKRTLEEERKQKLDRIEGL 222 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq-----------AEedkd~Ae~eLeeKl~~i~~L 222 (651)
...+.++++++.++.++..+...++.......++..-+..+..-=.+ .+.+++.+...|+++.+.|
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i--- 82 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL--- 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH---
Confidence 35677888888888888888877777777666666655555432111 1346777777777776655
Q ss_pred hhhhhhhhhhhhhhhhhhhh
Q 036820 223 QDKINLLSLELREKDDGVQK 242 (651)
Q Consensus 223 q~kinLLs~e~~~Ke~~i~~ 242 (651)
...|.-|...+...+..+.+
T Consensus 83 e~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344333333333
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.63 E-value=91 Score=33.99 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKL 216 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl 216 (651)
|-+.|+++.++.++..+.+..++........++......|.+....++.....+++.+
T Consensus 105 Le~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 105 LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555444
No 57
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.06 E-value=88 Score=28.36 Aligned_cols=95 Identities=27% Similarity=0.345 Sum_probs=52.7
Q ss_pred hhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---hcchHHHHhhhhhhhhhHH
Q 036820 357 NVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL---GNSLDEAKRSGEVLAGELF 433 (651)
Q Consensus 357 ~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l---~~~l~eak~~~~~Ls~El~ 433 (651)
-+++|-.++...++.|.+-+.+.-+|+.++++.+.-|+ .||+.|+.-.......| +.....++ .
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k---~qV~~L~~~~q~sE~~L~~Lqq~fsq~q----------~ 73 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSS---HQISALVLRAQASEILLEELQQGLSQAK----------R 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 35677777788888899999999999988887776554 46666655444333322 11112222 2
Q ss_pred hHHHHHHHhHHHHHhhhHHHHHHHHhhhhhh
Q 036820 434 AAKEVLKKASEELQNVSHELEATAENRDSLR 464 (651)
Q Consensus 434 s~ke~l~k~~eeL~~~S~eL~~~~e~rd~L~ 464 (651)
.|.+.|.+-....+-++.+|...-..+|+|.
T Consensus 74 ~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 74 DVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4556666666667777777777777777765
No 58
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.29 E-value=22 Score=27.54 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~ 416 (651)
+++|+..-.+...-+.+|+..||.|+.|=.-.++.|.+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 57889999999999999999999999999888887764
No 59
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.99 E-value=1e+02 Score=27.39 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHH
Q 036820 127 IVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKR 206 (651)
Q Consensus 127 ~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd 206 (651)
++.++.-|+..+.+.+.++..+.. +...|.-+++.++..+......+..+-+.-..+.+.+..++-.+..+-
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~----e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~---- 82 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTN----DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS---- 82 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH----
Confidence 567788899999999998887764 466677777777777777777776665555555555555444443222
Q ss_pred HHHHHHHHhhhhHHhhhhhhhhhh
Q 036820 207 TLEEERKQKLDRIEGLQDKINLLS 230 (651)
Q Consensus 207 ~Ae~eLeeKl~~i~~Lq~kinLLs 230 (651)
..+-+|+-+ |+.|++-|+.|.
T Consensus 83 l~r~dLE~~---iesL~eEl~FLK 103 (119)
T 3ol1_A 83 LARLDLERK---VESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 223333333 455666666654
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.16 E-value=29 Score=27.91 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 375 TRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 375 sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
-+.+...|..+.+++..-|..|..+|+.|+.|..-.++.|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999998887664
No 61
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=55.43 E-value=48 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820 160 MNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199 (651)
Q Consensus 160 lDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs 199 (651)
+++++.+...+...-..+...+...+.+...+.++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 43 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN 43 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333333333333
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.43 E-value=73 Score=28.87 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ 410 (651)
.|..|..|.+.+|.=| + ++ ..-.+-.....++.++.|+-+|++.+...++.-.+.+.|.+|....
T Consensus 16 ~Ie~Lkreie~lk~el----e---~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 16 LIERLYREISGLKAQL----E---NM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHH----H---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----H---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555322 2 22 2334445566677777788888887777666666666666666654
No 63
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.97 E-value=1e+02 Score=25.78 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHh-----------hhhhHHHHHHHHHHhhhhHHhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLK-----------FGEDKRTLEEERKQKLDRIEGLQDKI 226 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsq-----------AEedkd~Ae~eLeeKl~~i~~Lq~ki 226 (651)
.++++++.++.++..+...++....-..+...-+..+..-=.+ ...+++.+...|..+.+.|+ ..|
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~---~~i 81 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQ---LRE 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHH---HHH
Confidence 4556666666666666665555555544444444333221111 23467778888887776655 444
Q ss_pred hhhhhhhhhhhhhhhhhh
Q 036820 227 NLLSLELREKDDGVQKLS 244 (651)
Q Consensus 227 nLLs~e~~~Ke~~i~~l~ 244 (651)
.-|...++..+..+.++-
T Consensus 82 ~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 82 KTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.96 E-value=1.3e+02 Score=32.32 Aligned_cols=60 Identities=7% Similarity=0.117 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQK 215 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeK 215 (651)
++.+..+++.|++.|..+.+--..+...+..+.+...+-...+.+-++.+.....+|+.+
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~ 121 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSR 121 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455555666666666655555555555555544444444444444444444444444443
No 65
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=52.65 E-value=2.1e+02 Score=29.46 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH-----------HHHHH
Q 036820 127 IVSLEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIE-----------IDSLQ 195 (651)
Q Consensus 127 ~~~lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~e-----------Ieql~ 195 (651)
|..-+.-|.......-..++ ++....|...|+.+.+++.......+.....+.+-+.. ..++.
T Consensus 95 I~~Y~~~f~syy~~L~~~~d------~~d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~ 168 (346)
T 2nrj_A 95 IVEYDTTFDNYYETMVEAIN------TGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQ 168 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHH
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhh----------------------hhhhhhhhhhhhhhhhhhhhhhhHHH
Q 036820 196 TSLLKFGEDKRTLEEERKQKLDRIEGLQDKIN----------------------LLSLELREKDDGVQKLSSSLQQKETE 253 (651)
Q Consensus 196 ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kin----------------------LLs~e~~~Ke~~i~~l~SsLa~KE~e 253 (651)
.-+..-..+|..++.+++..-+.|.-..+-|. -...+++.....|.++...++.++..
T Consensus 169 ~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l 248 (346)
T 2nrj_A 169 SILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTL 248 (346)
T ss_dssp HHHHHTTCCHHHHHHHHHHHTGGGCGGGCCC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhhhh----------------------hhhhhhhhhHhcccch------------HHHHHHHHHHHHHhhhchh
Q 036820 254 LKNLNSVYKQN----------------------ELNARASSLLVERDDS------------KQKLEAVQKEYKELKLSSE 299 (651)
Q Consensus 254 ~~nL~~~y~qt----------------------~Ln~~v~sL~~ek~~~------------~~k~~~l~key~~lk~ssE 299 (651)
+..|..++.+. .+++.+.+|..--+.+ ...++.....+++++-..+
T Consensus 249 ~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~~a~ 328 (346)
T 2nrj_A 249 NRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAV 328 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred h
Q 036820 300 N 300 (651)
Q Consensus 300 ~ 300 (651)
+
T Consensus 329 ~ 329 (346)
T 2nrj_A 329 T 329 (346)
T ss_dssp H
T ss_pred H
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.20 E-value=1.3e+02 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=50.3
Q ss_pred hhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 358 VKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 358 ~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
...++..|...+..+.+...+..+|...|.+-+..+...+.+.+++..|+.+...+|=
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888999999999999999999999999999999998888774
No 67
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=51.80 E-value=1.2e+02 Score=26.40 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEE 211 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~e 211 (651)
.|.+.+.++..-|..++..+.+++..++.+..-++++...+.+|..-....+..
T Consensus 32 eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 32 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 467777788888999999999999999999999999999999988777666654
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.00 E-value=57 Score=31.00 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHH
Q 036820 317 HQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADL 396 (651)
Q Consensus 317 ~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L 396 (651)
..+|-+|+.+..+.++.+.- |=|+--+.+...|...+..+...++++.+|.+++.+-+.....|
T Consensus 38 d~~E~~~~~l~~e~~~~~~~----------------~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l 101 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGG----------------NIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERL 101 (152)
T ss_dssp -------------------C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCc----------------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666644331 00111123344556666667777888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 036820 397 ETEISRIRAEFAEVKHTLGN 416 (651)
Q Consensus 397 ~~qiskl~~E~~e~ke~l~~ 416 (651)
..++.-|+.+++.+.+.+.+
T Consensus 102 ~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776665544
No 69
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.16 E-value=82 Score=27.30 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 036820 343 EKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEV 410 (651)
Q Consensus 343 e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ 410 (651)
++-++.--||.|+-+--.+.++|-.+.. ..-....+|.++...|++|..+|-++..+..+.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~-------~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRT-------DNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778889998887666666655444 444556788999999999999999999888774
No 70
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.90 E-value=77 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae 209 (651)
.++.+++..+..-...++..+.-+.+++..|+.+...|......+..++
T Consensus 15 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 15 TKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444444444444444444444444444444444443333333333
No 71
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=49.80 E-value=1.8e+02 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhHHHhhhhHhhhhhhh
Q 036820 239 GVQKLSSSLQQKETELKNLNSVYKQNE 265 (651)
Q Consensus 239 ~i~~l~SsLa~KE~e~~nL~~~y~qt~ 265 (651)
.+..+......-..=....+.+.+||+
T Consensus 115 ~~~~l~~~~~~i~~i~~~I~~Ia~qtn 141 (309)
T 2ch7_A 115 VVESFQKGAEEITSFVETINAIAEQTN 141 (309)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333445566667773
No 72
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=48.56 E-value=94 Score=25.04 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhH
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDK 205 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedk 205 (651)
|.+.+.++..-|..++..+.+|+.-|+.+..-++++...|.+|..-.
T Consensus 18 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 18 VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777778888888888888888888888877777766543
No 73
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=47.71 E-value=1.9e+02 Score=31.08 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE 202 (651)
+....|+.|-..++..|..|...|..+.+...++..-|.-++.+....+
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q 72 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDE 72 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccc
Confidence 3456788888889999999999999999999999999998888877664
No 74
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.46 E-value=76 Score=25.27 Aligned_cols=41 Identities=5% Similarity=-0.002 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLL 199 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLs 199 (651)
|-.+++.++..|..|...+...+.-|..++.++.++..+|.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666666666666666666666777777666665
No 75
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=46.05 E-value=1.1e+02 Score=24.41 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
|.+.+.++..-|..++..+.+|+.-++.+..-++++...+.+|
T Consensus 24 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 24 LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666677666666666666666666554
No 76
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=45.03 E-value=1.2e+02 Score=24.21 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFG 202 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAE 202 (651)
|.+.+.++..-|..++..+.+|+.-|+.+..-++++...+.+|.
T Consensus 21 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 21 INEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555556666667777777777777777777777766666553
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.42 E-value=1.2e+02 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhh
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAG 430 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~ 430 (651)
.++..|..+..-|+.|+-+|+.+...+.+.+..=.+-=.+.++..+.|.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777766666555554333333344444444443
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.94 E-value=67 Score=27.19 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=50.4
Q ss_pred HHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHh---hhhhh--------------hhhhhhhh
Q 036820 210 EERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNS---VYKQN--------------ELNARASS 272 (651)
Q Consensus 210 ~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~---~y~qt--------------~Ln~~v~s 272 (651)
.++++++..+..||.+++.+..++..++..++++..-+. |. ..|.. +|-.- .|+.++..
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~--eL--~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ 81 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALD--EI--ESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIET 81 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHH
Confidence 467788888889999999998888888888877754433 22 22221 22211 55555555
Q ss_pred hHhcccchHHHHHHHHHHHHHhh
Q 036820 273 LLVERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 273 L~~ek~~~~~k~~~l~key~~lk 295 (651)
+-.+......++..+.+++.+++
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 79
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=42.59 E-value=1.3e+02 Score=24.56 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHH
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLE 209 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae 209 (651)
|.+.+.++..-|..++..+.+|+.-|+.+..-++++...+.+|..-....+
T Consensus 22 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r 72 (77)
T 1jth_B 22 LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666677778888888888888888888888888888888776554443
No 80
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.80 E-value=1.3e+02 Score=24.04 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGE 203 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEe 203 (651)
|.+.+.++..-|..++..+.+|+.-|+.+..-++++...+.+|..
T Consensus 22 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 22 LTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777888888888888877777777777776643
No 81
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=41.60 E-value=1.2e+02 Score=25.82 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhh
Q 036820 172 GLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREK 236 (651)
Q Consensus 172 SL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~K 236 (651)
.+...|..-++-|+.++.-|+.++..+.+--++...++.++ .++|.+||-|..+++|-
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~-------~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN-------LNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhHHHHhhcccc
Confidence 34445555667788888889999988887777776666655 67888888887777663
No 82
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.30 E-value=82 Score=30.07 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=20.6
Q ss_pred chhhhhheeeccccchhccch-hhhcCC--CCchhhHHH-HHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHHHHHH
Q 036820 62 TRRKTILLVGISVLPLLNLRA-RALDGL--APRSGVLGA-LYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKDFESK 137 (651)
Q Consensus 62 ~~rr~iL~vgisVLP~L~lr~-~A~~~~--~p~sGvlg~-Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDedFEkR 137 (651)
=++-..+.+++.+||+|-|.. +|+++- -|+.|+.+. ...|+...+...+.-.+....+-.+ ....
T Consensus 25 Mk~~kk~~la~~al~~l~l~s~~A~A~g~~~~g~gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~-----------Lr~q 93 (175)
T 3lay_A 25 MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPLTTEQQATAQKIYDDYYTQTSA-----------LRQQ 93 (175)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 344455677888999887776 666652 135566553 3567777776666555544444322 1234
Q ss_pred HHHHHHHHHHHH
Q 036820 138 LQNEQEQRTKQL 149 (651)
Q Consensus 138 LKevQeeVkkLL 149 (651)
+...+.+...|+
T Consensus 94 l~akr~EL~aL~ 105 (175)
T 3lay_A 94 LISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555666665
No 83
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.17 E-value=1.5e+02 Score=26.48 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820 166 ANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD 237 (651)
Q Consensus 166 LnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke 237 (651)
+...|+..++-|+....-+..+|.-+..+..++.. +.++. .+....|..|++.|.-|.+.+.|..
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~k-----ekaq~--q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEK-----KVSQA--LEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666676677777777777777652 22332 2223357888888888888887765
No 84
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.40 E-value=1.7e+02 Score=24.78 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhh
Q 036820 370 ETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNV 449 (651)
Q Consensus 370 e~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~ 449 (651)
+-+...-.++.++.+.|........+|+.+..+|..|-+..... +. +.....+-|.+.+-+|+.-
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q----l~-----------eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS----MK-----------QLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----------hHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555566666666666555555444 22 3333344445555566665
Q ss_pred hHHHHHHH
Q 036820 450 SHELEATA 457 (651)
Q Consensus 450 S~eL~~~~ 457 (651)
-++|.+-+
T Consensus 79 l~el~~rl 86 (89)
T 3bas_A 79 VARLKKLV 86 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554433
No 85
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.13 E-value=2.3e+02 Score=26.25 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhh
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKD 237 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke 237 (651)
.|-++-..-...+..+-..|..++.+.+++..+.+.+.-.+..++.+++.++.....-=..|..|.+-|..+...++..|
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344444445566666666666666666666666666666666666666666555555555555555555555554444
Q ss_pred h
Q 036820 238 D 238 (651)
Q Consensus 238 ~ 238 (651)
.
T Consensus 122 ~ 122 (147)
T 2b9c_A 122 D 122 (147)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.44 E-value=3.2e+02 Score=29.20 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 036820 112 TLEYMKARLK 121 (651)
Q Consensus 112 tiesm~~kL~ 121 (651)
.|..|+.-|+
T Consensus 39 ~l~~LE~~l~ 48 (409)
T 1m1j_C 39 ELLEIEGLLQ 48 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 87
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=38.28 E-value=2e+02 Score=28.93 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=81.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-HHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH-HHHHHhHHH
Q 036820 122 EKEAAIVSLEKDFESKLQNEQEQRTKQLKSA-KEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIE-IDSLQTSLL 199 (651)
Q Consensus 122 e~Eaa~~~lDedFEkRLKevQeeVkkLLKk~-kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~e-Ieql~ssLs 199 (651)
--|+++.+-=..++.++...+..+...+... ......-+..|-..++.|+...+..+.+++.++++=.. -+.+.--++
T Consensus 127 aLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT 206 (261)
T 3rkg_A 127 ALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLT 206 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhcc
Confidence 3467777777777777777777776666332 22233344555555567777777777777777665332 233333334
Q ss_pred h---hhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhh
Q 036820 200 K---FGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQ 241 (651)
Q Consensus 200 q---AEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~ 241 (651)
. ..++.+.++--|+-=+-.++.+..++..|...|++-|+-|.
T Consensus 207 ~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~ 251 (261)
T 3rkg_A 207 VKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVN 251 (261)
T ss_dssp SCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 26677788888888999999999999999999999998764
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.69 E-value=1.6e+02 Score=26.49 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhH
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRI 219 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i 219 (651)
-+-++|+=|++-+++.|..+...+...+.-..+-....++..-.+......++.++..|++.=+.|
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888888888888777777777777777777777777776654433
No 89
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=37.68 E-value=1.6e+02 Score=23.88 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
+.+..+..++.++.+.++....+|.+=+..+++.+.++..+....+.+..+|..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888899999999999999999999999999999999999888888864
No 90
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.55 E-value=1.9e+02 Score=24.53 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 155 EQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 155 eeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
+...|.-+++.+...+...+..+..+-+.-.++.+.+..++-.+..+
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34445555555555555555555555555555555555555444433
No 91
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.32 E-value=1.5e+02 Score=25.80 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
+.+..+.+++.++.+.++.....|.+=+..+++.+.++..+....+.+..+|+.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~k 74 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888888888888888888888888888888888888764
No 92
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=37.10 E-value=3.1e+02 Score=26.91 Aligned_cols=121 Identities=24% Similarity=0.277 Sum_probs=89.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHh--HHHhHHHHhhhHHHhhhhHHHHhHHHhhhhhccccchhHHH
Q 036820 475 EATANDLKEQKEIVSSLNKELQALEKQTSKDKEARKS--LETDLEEATKSLDEMNRNALELSKNLEKANSQISNLEDEKA 552 (651)
Q Consensus 475 E~t~~eL~~ekkiv~tLn~eL~al~~Q~~~d~EaRk~--Le~dLeeaT~SldEmn~~~~~LS~~Le~ans~issle~eKe 552 (651)
....+-|-+|-+.+..|-.++++++.+.-+..|.=|- .=.|||..|.=| |.||+.|-.+..-..+.-+||.
T Consensus 32 ~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LL-------LsLs~RLaRvenaL~~~~~Er~ 104 (190)
T 3thf_A 32 KREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLL-------LSLSERLAQTESSLETRQQERG 104 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHccChhHHH
Confidence 3455667788899999999999999999998887653 346777766543 8899999998888877788888
Q ss_pred HHH---HhHHHHHhhhHHHhhchHHH--------------------HHHHH---HhhhhhhhhhHhhhhhHHHHhh
Q 036820 553 VLY---KSLTEQKSIANESRENMEDA--------------------HNLVM---RLGQERKSLDKRSKKLEEELAS 602 (651)
Q Consensus 553 vL~---ksl~eqk~~t~EAqeN~eDA--------------------~nli~---~Lg~ERE~~e~r~kkLEeELAs 602 (651)
.|. +-|..|-.-+++-.+|+.-= +.+|. .|=.|.-.++-|.|-.||-|+.
T Consensus 105 sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIklgeEQL~~ 180 (190)
T 3thf_A 105 ALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSS 180 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 885 45777887778877776533 22232 3556667777777777777764
No 93
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=35.73 E-value=2.7e+02 Score=25.79 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhh
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELR 234 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~ 234 (651)
....+..+|.-+...|..+..-++.+...|..+...|....+.++.++..=..--..-+...++|..|+..++
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kLk 146 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVG 146 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666666666666666666666554444444444555566666655543
No 94
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.41 E-value=1.8e+02 Score=27.70 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=47.3
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 335 ATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 335 ~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
..|..|..++..++. .++.|.+++..-...++..++|..-|.-+++....-..+|+.+=..|-+- .+
T Consensus 68 ~~I~~L~~El~~l~~-------ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R------WM 134 (152)
T 3a7p_A 68 NTLAILQKELKSKEQ-------EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR------WL 134 (152)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 367777777666654 34567777777777777777777666666665555555555544444333 34
Q ss_pred hcchHHHHhhhhh
Q 036820 415 GNSLDEAKRSGEV 427 (651)
Q Consensus 415 ~~~l~eak~~~~~ 427 (651)
.++-.+|+...+.
T Consensus 135 ~rk~qEAe~MN~a 147 (152)
T 3a7p_A 135 KKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHh
Confidence 5555566555444
No 95
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=35.25 E-value=1.6e+02 Score=28.28 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhH
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ 443 (651)
+..|..+|.+.+. ++..++-++++||.-.+....+..+++..- .+.++.+|-.+-+-|.++-
T Consensus 44 ~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl 106 (197)
T 1dkg_A 44 VANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRAL 106 (197)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344445544433 355678899999999999999998888765 4778888888888888764
No 96
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=35.24 E-value=1.9e+02 Score=24.01 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhh
Q 036820 159 LMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGE 203 (651)
Q Consensus 159 LlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEe 203 (651)
|.+.+.++..-|..++..+.+|+.-|+.+..-++++...+.+|..
T Consensus 33 L~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 33 LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777888888888888887777777777776654
No 97
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=35.20 E-value=70 Score=30.31 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.2
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHHHHHHHH
Q 036820 114 EYMKARLKEKEAAIVSLEKDFESKLQNEQEQ 144 (651)
Q Consensus 114 esm~~kL~e~Eaa~~~lDedFEkRLKevQee 144 (651)
+.|..+|+++|..|..|.+.++.||+..++.
T Consensus 8 ee~~e~L~~~e~l~~el~~tWeeKl~~te~~ 38 (184)
T 4egx_A 8 EEAIERLKETEKIIAELNETWEEKLRRTEAI 38 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678899999999999999999999876544
No 98
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=34.12 E-value=3.1e+02 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhh
Q 036820 277 RDDSKQKLEAVQKEYKELKLSSENET 302 (651)
Q Consensus 277 k~~~~~k~~~l~key~~lk~ssE~~a 302 (651)
.+....+++.|...|..|...+..|-
T Consensus 183 ~~~i~~~l~~L~~~w~~L~~~~~~R~ 208 (322)
T 1u4q_A 183 KEEIQQRLAQFVDHWKELKQLAAARG 208 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999887776653
No 99
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.66 E-value=92 Score=24.49 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
.....|+...+....-|..|..+|..|+.|....++.|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888889999999999999999999998888765
No 100
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=33.45 E-value=1.1e+02 Score=26.36 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccch
Q 036820 201 FGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDS 280 (651)
Q Consensus 201 AEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~ 280 (651)
-+.+...+..++..|++.|..+.. .-=..-|.+-+..+.+...-|.+-+.|++++..-+ -+.+|.||. ++
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~g--eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~-R~~~~~klr-------~Y 79 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPP--DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS-RGMYSNRMR-------SY 79 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCT--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT-HHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHh-HHHHHHHHH-------HH
Confidence 355666777777777777655421 11123355667777888888899999999995322 336666664 57
Q ss_pred HHHHHHHHHHHHHhhhch
Q 036820 281 KQKLEAVQKEYKELKLSS 298 (651)
Q Consensus 281 ~~k~~~l~key~~lk~ss 298 (651)
+..|+.++++|..++..+
T Consensus 80 k~dL~~lk~elk~~~~~~ 97 (102)
T 1vcs_A 80 KQEMGKLETDFKRSRIAS 97 (102)
T ss_dssp HHHHHHHHHHTHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 788888888888877653
No 101
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.90 E-value=2.5e+02 Score=26.17 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 036820 130 LEKDFESKLQNEQEQRTKQLKSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEID 192 (651)
Q Consensus 130 lDedFEkRLKevQeeVkkLLKk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIe 192 (651)
+=.+|-++|..+-+++..+.++..+-.+..-+++..++..+..-.+.+..+...-.+++.-+.
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788888888888888887777777777777777777777777777666666665555443
No 102
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.86 E-value=95 Score=24.74 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLG 415 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~ 415 (651)
.....|+.+.+....-|..|..+|..|+.|....+..|.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888889999999999999999999988887764
No 103
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.48 E-value=2.4e+02 Score=27.71 Aligned_cols=65 Identities=15% Similarity=0.325 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhH
Q 036820 379 ASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 379 ~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ 443 (651)
+..|..+|.++.....++..+.-++++||.-.+....+..+++..- .+.++.+|-.+-+-|..+-
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl 126 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERAL 126 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455666666666677777888899999999999999988887654 4667788888888877763
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.01 E-value=1.4e+02 Score=25.47 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhh
Q 036820 382 LEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLA 429 (651)
Q Consensus 382 L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls 429 (651)
++..|..+..-|+.|+-+|..++..+.+.++.=.+-=.+.++..+.|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666555555444333222233333333333
No 105
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=31.92 E-value=2.8e+02 Score=25.18 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHh
Q 036820 315 ELHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKD 391 (651)
Q Consensus 315 ~l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~ 391 (651)
++.-|..+|..|=.--.+-+.-|.+|..+....+ ..++.|.-|+..+.+-.+-...=|..--++-.+-++...
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~----~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK----IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence 3444444554444444444555666666655533 333556666666666666555555554444444444333
No 106
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.90 E-value=1.3e+02 Score=26.59 Aligned_cols=88 Identities=16% Similarity=0.313 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHHHhhhhH
Q 036820 316 LHQLKEKLELTLDEACENRATIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQSKDSCAD 395 (651)
Q Consensus 316 l~qLeekl~~Al~e~~k~~~~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~ 395 (651)
+..|..+|..|-.-...-+..|.+|..+....+..+ +.+.-|+..+.+-.+-...=|..--++..+-++.......
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445666666666666666667777777666655544 5667777777777777777666666666666666555566
Q ss_pred HHHHHHHHHHHH
Q 036820 396 LETEISRIRAEF 407 (651)
Q Consensus 396 L~~qiskl~~E~ 407 (651)
|..++++|..|.
T Consensus 80 lq~q~~~L~~~~ 91 (94)
T 3jsv_C 80 LQREFNKLKVGC 91 (94)
T ss_dssp HHHTTC------
T ss_pred HHHHHHHHHHhh
Confidence 666666665543
No 107
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.89 E-value=54 Score=27.41 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=48.8
Q ss_pred HHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHh---hhhhh--------------hhhhhhhhhH
Q 036820 212 RKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNS---VYKQN--------------ELNARASSLL 274 (651)
Q Consensus 212 LeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~---~y~qt--------------~Ln~~v~sL~ 274 (651)
|++.+.....||.++..+.+++..++..++++..-+.+ . ..|.. +|-.- .|+.++..+-
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~E--L--~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEE--L--SRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHH
Confidence 66778888888888888888888877777776543322 2 22211 23221 5566666665
Q ss_pred hcccchHHHHHHHHHHHHHhh
Q 036820 275 VERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 275 ~ek~~~~~k~~~l~key~~lk 295 (651)
.+-...+.++..+++++.+++
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666655554
No 108
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=29.96 E-value=2.1e+02 Score=22.85 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
+.+..+..++..+.+.++....+|.+=+..+++.+.++..+....+.+..+|..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888999999999999999999999999999999999999998888864
No 109
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=29.82 E-value=2.2e+02 Score=22.87 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
+.+..+..++..+.+.+.....+|.+=+..++..+.++..+....+.+..+|..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 59 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQR 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999998888864
No 110
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.99 E-value=4.9e+02 Score=28.82 Aligned_cols=39 Identities=5% Similarity=0.209 Sum_probs=21.8
Q ss_pred chhhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHH
Q 036820 91 RSGVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKD 133 (651)
Q Consensus 91 ~sGvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDed 133 (651)
|.=+.|.|- .+|+. .-..|+-+++.|.+........+.-
T Consensus 49 GCrLqglL~---kqerd-v~~rI~kLkn~L~~~s~s~~~s~~y 87 (491)
T 1m1j_A 49 GCRMQGIID---DTDQN-YSQRIDNIRQQLADSQNKYKTSNRV 87 (491)
T ss_dssp STTHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred ccchhhHHH---Hhhhh-HHHHHHHHHHHHHHHHhhcchHHHH
Confidence 444455443 34433 3346777777777776665555443
No 111
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=28.33 E-value=2e+02 Score=24.34 Aligned_cols=66 Identities=27% Similarity=0.243 Sum_probs=51.9
Q ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhh
Q 036820 366 QITQETLETTRNEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGE 431 (651)
Q Consensus 366 q~Tqe~L~~sR~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~E 431 (651)
|.+.||+...=.|--+|-+-+.++|.+-.+=--+++..+.--.+=++-|..+..+|..--..|+.|
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 566777777777778888888888888777778888899999999999999999999887777655
No 112
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.27 E-value=1.5e+02 Score=26.67 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=37.5
Q ss_pred hhHHHHHhhhhhhhHhHHHHHHHHHHHhhhhHHHHHhhHHH---HHHHHHHHHH
Q 036820 93 GVLGALYALTQNEKKATDATLEYMKARLKEKEAAIVSLEKD---FESKLQNEQE 143 (651)
Q Consensus 93 Gvlg~Ly~l~q~ekka~~~tiesm~~kL~e~Eaa~~~lDed---FEkRLKevQe 143 (651)
|-||++-|+ |+|-..+...|..+...+.+-..++..|.++ |-.||.+++-
T Consensus 1 ~~~~s~~al-~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 1 GPLGSLVAI-QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888775 5677788888888888888888888777665 6667766543
No 113
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.78 E-value=2.9e+02 Score=29.57 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036820 384 KQLKQSKDSCADLETEISRIRAEFAEVKHTL 414 (651)
Q Consensus 384 ~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l 414 (651)
.++-..-.....+..++..|+++-|.+...+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555566666666655554433
No 114
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.54 E-value=2.1e+02 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEIDSLQTSL 198 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssL 198 (651)
.+.+..+.....++...+.-+..+...+...+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 15 EELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 115
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=27.39 E-value=3.7e+02 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHHHHHhhh
Q 036820 278 DDSKQKLEAVQKEYKELKL 296 (651)
Q Consensus 278 ~~~~~k~~~l~key~~lk~ 296 (651)
+....++++|...+..|..
T Consensus 180 ~~I~~~~~~l~~~W~~L~~ 198 (210)
T 3pdy_A 180 PTVESFQAALQTQWSWMLQ 198 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666654
No 116
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=27.35 E-value=2.3e+02 Score=22.43 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
.+..+..++..+.+.++....+|.+=+..+++.+.++..+....+.+..+|..
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999888853
No 117
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.12 E-value=1.8e+02 Score=25.19 Aligned_cols=14 Identities=0% Similarity=0.202 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHH
Q 036820 163 LNSANTTISGLGKE 176 (651)
Q Consensus 163 LnSLnsTLtSL~ke 176 (651)
-+++.++|..+...
T Consensus 12 ~~D~~~ql~~l~~~ 25 (95)
T 2c5k_T 12 VKDTKEQLNRINNY 25 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 118
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.00 E-value=2.9e+02 Score=23.46 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRFIE 185 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~tVE 185 (651)
.+++.+++++..|..+...+..++..-.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666555555555555544433
No 119
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=26.39 E-value=2.4e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 161 NKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 161 DQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
+.+..+..++..+.+.++....+|.+=+..+++.+.++..+....+.+..+|..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999888863
No 120
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=26.34 E-value=72 Score=27.24 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=29.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhhhhhhhhhhhHhcccchHHHHHHHHHH
Q 036820 226 INLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQNELNARASSLLVERDDSKQKLEAVQKE 290 (651)
Q Consensus 226 inLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt~Ln~~v~sL~~ek~~~~~k~~~l~ke 290 (651)
|-.|..++..|+..|+.|---++=|-.++. .||-.+=+|+.|.+=..+++..++.|
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~E---------rLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTE---------RLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 344445555555555555444443333333 35667778888887777777766543
No 121
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=26.26 E-value=39 Score=32.22 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-hhhhhhhHHhHHHHHHHhH
Q 036820 377 NEASDLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRS-GEVLAGELFAAKEVLKKAS 443 (651)
Q Consensus 377 ~e~s~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~-~~~Ls~El~s~ke~l~k~~ 443 (651)
.++..+..++........++..+.-++++||.-.+...++..+++..- .+.++.+|-.+-+-|..+-
T Consensus 19 ~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl 86 (177)
T 3a6m_A 19 QEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRAL 86 (177)
T ss_dssp HHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444445555566666777788889999999999999888887654 4678888888888887764
No 122
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.94 E-value=4.5e+02 Score=25.30 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=12.9
Q ss_pred hHHHHHHHhHHHHHhhhHHHHHHH
Q 036820 434 AAKEVLKKASEELQNVSHELEATA 457 (651)
Q Consensus 434 s~ke~l~k~~eeL~~~S~eL~~~~ 457 (651)
+++..|+.+-.+.+..|..++.-.
T Consensus 128 ~L~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 128 ALKKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 123
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=25.88 E-value=3e+02 Score=23.28 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=24.4
Q ss_pred HHHHHhhhhH-Hhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 210 EERKQKLDRI-EGLQDKINLLSLELREKDDGVQKLSSSL 247 (651)
Q Consensus 210 ~eLeeKl~~i-~~Lq~kinLLs~e~~~Ke~~i~~l~SsL 247 (651)
.++++.+..+ +...+||.|-++=..--+.+++.|..-|
T Consensus 65 ~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrLD~dl 103 (104)
T 4afl_A 65 KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDL 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555555443 3445788877777777777887776554
No 124
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.85 E-value=1.3e+02 Score=26.13 Aligned_cols=63 Identities=8% Similarity=0.123 Sum_probs=40.4
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHhhHHHHHH--HHHHHHHHHHHHH--HHhHHHhHHHHHHHHHHHH
Q 036820 106 KKATDATLEYMKARLKEKEAAIVSLEKDFES--KLQNEQEQRTKQL--KSAKEEQQLLMNKLNSANT 168 (651)
Q Consensus 106 kka~~~tiesm~~kL~e~Eaa~~~lDedFEk--RLKevQeeVkkLL--Kk~kEeeQSLlDQLnSLns 168 (651)
+..+++.|..++.+.+.-++.|..+...+.. --..+++=+..|. ..++|..|.|+++++..+.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 4556667777776666666666555432211 0123566667777 4579999999999988764
No 125
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.26 E-value=3.6e+02 Score=23.97 Aligned_cols=82 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 036820 165 SANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLS 244 (651)
Q Consensus 165 SLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~ 244 (651)
++.+++.++.+-|..++-..+++-.+-+.+.+.+. .++++=.+.=..|..||-||.--=--+++---.-=.|-
T Consensus 1 slan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~-------~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE 73 (101)
T 1d7m_A 1 EMANRLAGLENSLESEKVSREQLIKQKDQLNSLLA-------SLESEGAEREKRLRELEAKLDETLKNLELEKLARMELE 73 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q ss_pred hhhhhhHHH
Q 036820 245 SSLQQKETE 253 (651)
Q Consensus 245 SsLa~KE~e 253 (651)
|-||.-|.|
T Consensus 74 ~RLsKtEKD 82 (101)
T 1d7m_A 74 ARLAKTEKD 82 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhhH
No 126
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.16 E-value=2.5e+02 Score=23.98 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHHhhhh
Q 036820 392 SCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAENRDS 462 (651)
Q Consensus 392 ~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e~rd~ 462 (651)
..+.+..++..++.+.-+.....-+-+.+++.+|-.-+.+|..=.|.|..+...|..+-++|..+-..-.+
T Consensus 10 ~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 10 ELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567888889999998888888899999999999999999999999999999999998888655443333
No 127
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.03 E-value=3e+02 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.7
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHh
Q 036820 103 QNEKKATDATLEYMKARLKEKEAAIVS 129 (651)
Q Consensus 103 q~ekka~~~tiesm~~kL~e~Eaa~~~ 129 (651)
|+|-..+...|+.++.++++-++.|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566667778888888888888887764
No 128
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.89 E-value=4e+02 Score=25.52 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred hHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhh-------------
Q 036820 196 TSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYK------------- 262 (651)
Q Consensus 196 ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~------------- 262 (651)
+++.....-....-.+..+|-..-+.|.+..|-+|+||..|--.|.-++.-..=-|.+. .+.--|+
T Consensus 10 ~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~-~~qer~~~~~~~~f~~e~~~ 88 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG-QTQEKSSKEYLERFRREGNE 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSSTTGGGSSSSSCCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHhhcCH
Confidence 35566666666777888889999999999999999999999999988888777666654 2222221
Q ss_pred ---------hhhhhhhhhhhHhcccchHHHHHHHHHHH
Q 036820 263 ---------QNELNARASSLLVERDDSKQKLEAVQKEY 291 (651)
Q Consensus 263 ---------qt~Ln~~v~sL~~ek~~~~~k~~~l~key 291 (651)
...|++++.+|...+....+.+......|
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~ 126 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDN 126 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01567777777766666666555443333
No 129
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.53 E-value=25 Score=35.65 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=38.0
Q ss_pred hhccccchhHHHHHHHhHHHHHhhhHHHhhchHHHHHHHHHhhhhhhhhhHhhhhhHHHHhhcccchhhhhhccccccCc
Q 036820 541 NSQISNLEDEKAVLYKSLTEQKSIANESRENMEDAHNLVMRLGQERKSLDKRSKKLEEELASAKGEILRLRSQINSSKTL 620 (651)
Q Consensus 541 ns~issle~eKevL~ksl~eqk~~t~EAqeN~eDA~nli~~Lg~ERE~~e~r~kkLEeELAsAKGEiLrLR~qi~ss~s~ 620 (651)
...|..++.|-.+|...|.+.--...-.+. ++ =+..|..+-..+..+..+|.++|..|+.||.+||.+|..-++|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~--~~---~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS--AR---DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp -----------------------------C--CH---HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh--hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445555666666666666432000000111 11 1334666778899999999999999999999999999988888
Q ss_pred c
Q 036820 621 V 621 (651)
Q Consensus 621 ~ 621 (651)
+
T Consensus 98 P 98 (251)
T 3m9b_A 98 P 98 (251)
T ss_dssp C
T ss_pred C
Confidence 7
No 130
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.18 E-value=4.3e+02 Score=24.39 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=43.5
Q ss_pred HHhHHHhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhhhhHHhhhhhhhhh
Q 036820 150 KSAKEEQQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQKLDRIEGLQDKINLL 229 (651)
Q Consensus 150 Kk~kEeeQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLeeKl~~i~~Lq~kinLL 229 (651)
-++++.=..-..|-+.-|.||..+..-|...+... -.++..+++-|. .+..+|++....++-|....--|
T Consensus 35 TqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~-------~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 35 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEIT-------TLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhchhh
Confidence 33455445555667888889988888887776664 223444444433 44445555555555555555555
Q ss_pred hhhhhhhh
Q 036820 230 SLELREKD 237 (651)
Q Consensus 230 s~e~~~Ke 237 (651)
+..|-++.
T Consensus 105 ~~r~~~~~ 112 (121)
T 3mq7_A 105 SVRIADKK 112 (121)
T ss_dssp HHHHC---
T ss_pred hhHhhhcc
Confidence 55554443
No 131
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.00 E-value=3.3e+02 Score=22.97 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 036820 313 KEELHQLKEKLELT 326 (651)
Q Consensus 313 e~~l~qLeekl~~A 326 (651)
++++.++.++|...
T Consensus 9 ~~~~~~~~~~l~~L 22 (112)
T 1l8d_A 9 ETKKTTIEEERNEI 22 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 132
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.86 E-value=2.7e+02 Score=22.08 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 036820 164 NSANTTISGLGKELQNEKRFIEELRIEID 192 (651)
Q Consensus 164 nSLnsTLtSL~keLqnek~tVEdlk~eIe 192 (651)
+.+.+.|..|...+.....-|..++..+.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 133
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.71 E-value=3.1e+02 Score=25.97 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhHhHHHhHHHHhhhHH
Q 036820 490 SLNKELQALEKQTSKDKEARKSLETDLEEATKSLD 524 (651)
Q Consensus 490 tLn~eL~al~~Q~~~d~EaRk~Le~dLeeaT~Sld 524 (651)
.|+-|++.|+.+....--+|+.|.+||+..-.-..
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132 (146)
T ss_dssp HHHHHHHHHGGGTTTC-------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888888888886554443
No 134
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.52 E-value=4.4e+02 Score=28.92 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhh
Q 036820 156 QQLLMNKLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKF 201 (651)
Q Consensus 156 eQSLlDQLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqA 201 (651)
...|+.|-..++..|..|...|..+.+....+..-|.-++.++...
T Consensus 83 ad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~ 128 (461)
T 3ghg_B 83 QEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR 128 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 3344444445555555555555555555555555554444444433
No 135
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.41 E-value=3.9e+02 Score=23.74 Aligned_cols=25 Identities=8% Similarity=0.299 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhh
Q 036820 278 DDSKQKLEAVQKEYKELKLSSENET 302 (651)
Q Consensus 278 ~~~~~k~~~l~key~~lk~ssE~~a 302 (651)
+....+++.|...|..|...++.|-
T Consensus 181 ~~I~~~~~~l~~~w~~l~~~~~~R~ 205 (213)
T 1cun_A 181 ENITAKMKGLKGKVSDLEKAAAQRK 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999988776553
No 136
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.92 E-value=3.1e+02 Score=26.92 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhH
Q 036820 154 EEQQLLMNKLNSANTTISGLGKELQNE 180 (651)
Q Consensus 154 EeeQSLlDQLnSLnsTLtSL~keLqne 180 (651)
-+...|..+|......+..+..+|+..
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 137
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=22.76 E-value=3.2e+02 Score=22.52 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036820 162 KLNSANTTISGLGKELQNEKRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ 214 (651)
Q Consensus 162 QLnSLnsTLtSL~keLqnek~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee 214 (651)
.+..+..++..+.+.++....+|.+=+..++..+.++..+....+.+..+|..
T Consensus 22 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 74 (83)
T 1sfc_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999999999988888864
No 138
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=22.59 E-value=3.4e+02 Score=22.63 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhhhHHHHHHHH
Q 036820 393 CADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNVSHELEATAE 458 (651)
Q Consensus 393 ~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~S~eL~~~~e 458 (651)
.+.|+.++...+++.-..-....+-+.+++.+|-.-..+|..=+|.|..+..-|+.+-+.|.-.-.
T Consensus 7 ~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k 72 (79)
T 1n7s_C 7 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHH
Confidence 356778888888888888888888889999999999999999999999999999998888765543
No 139
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=22.55 E-value=4.3e+02 Score=24.50 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhh-----hhHHHHHhhHHHHHhhhhhhhHHHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVK-----NLKYELQITQETLETTRNEASDLEKQLKQ-SKDSCADLETEISRIRAEFAE 409 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k-----~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~-~~~~~~~L~~qiskl~~E~~e 409 (651)
+.+-|+...+.+|..|.-+++.++ .+.+.-+..+..+++.|..+.=+.++|.. ++.--..|..++.-+ ..+
T Consensus 72 ~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~---~e~ 148 (185)
T 3r2p_A 72 FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPL---GEE 148 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHH
Confidence 455566666677777777766554 23333345667777777777777666632 222222222222222 234
Q ss_pred HHHHHhcchHHHHhhhhhhhhhH
Q 036820 410 VKHTLGNSLDEAKRSGEVLAGEL 432 (651)
Q Consensus 410 ~ke~l~~~l~eak~~~~~Ls~El 432 (651)
++..+.-++++.+....-.++|+
T Consensus 149 lr~~l~~~~e~lk~~l~Py~ee~ 171 (185)
T 3r2p_A 149 MRDRARAHVDALRTHLAPYSDEL 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Confidence 56666666666666655555554
No 140
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.37 E-value=4.1e+02 Score=23.99 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=27.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Q 036820 386 LKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDE 420 (651)
Q Consensus 386 L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~e 420 (651)
..+.++.+.+|..+|+.|..|+.+.+..-+.-+++
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e 69 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADD 69 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999998764444443
No 141
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.34 E-value=2.4e+02 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhHhhhhhh--hhhhhhhhhHhcccchHHHHHHHHHHHHHhh
Q 036820 223 QDKINLLSLELREKDDGVQKLSSSLQQKETELKNLNSVYKQN--ELNARASSLLVERDDSKQKLEAVQKEYKELK 295 (651)
Q Consensus 223 q~kinLLs~e~~~Ke~~i~~l~SsLa~KE~e~~nL~~~y~qt--~Ln~~v~sL~~ek~~~~~k~~~l~key~~lk 295 (651)
=|||--|-++.+.-|..|+.+... .-.++.++|..+ +|-.+|..+..++....-+++-++-+-.++|
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~------~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQ------GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777767666655432 234688888877 8888888888888888888888777766665
No 142
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.98 E-value=8.3e+02 Score=27.00 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHH---HHHHHHHHHHHHHHH-------HHHhHHHhHHHHHHHHHHHHhHHHHHHHHHhH
Q 036820 111 ATLEYMKARLKEKEAAIVSLEKD---FESKLQNEQEQRTKQ-------LKSAKEEQQLLMNKLNSANTTISGLGKELQNE 180 (651)
Q Consensus 111 ~tiesm~~kL~e~Eaa~~~lDed---FEkRLKevQeeVkkL-------LKk~kEeeQSLlDQLnSLnsTLtSL~keLqne 180 (651)
.+...+-......+.+|---|+. .|+.+...++.-+-. -++-.+.++.+-+|=.+....+..+...+..+
T Consensus 459 ~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~ 538 (592)
T 1f5n_A 459 EILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 538 (592)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544555566667655655 555554444332211 12233444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHHH-hhhhHHhhhhhhhhhhhhhhhhhhh
Q 036820 181 KRFIEELRIEIDSLQTSLLKFGEDKRTLEEERKQ-KLDRIEGLQDKINLLSLELREKDDG 239 (651)
Q Consensus 181 k~tVEdlk~eIeql~ssLsqAEedkd~Ae~eLee-Kl~~i~~Lq~kinLLs~e~~~Ke~~ 239 (651)
+..+- .+.-..+..+|+| +--.-++.++|++.|..||++-...
T Consensus 539 ~~~~~----------------~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 539 RVQLL----------------KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHH----------------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32211 2333345555555 2233467899999999999887665
No 143
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.96 E-value=2.4e+02 Score=22.02 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHh
Q 036820 381 DLEKQLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKR 423 (651)
Q Consensus 381 ~L~~~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~ 423 (651)
++++-.+.....-.-|.+...+|.+|+.-.+..|...|...+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677778888888889999999999999999988888776553
No 144
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.34 E-value=3.3e+02 Score=25.01 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhHHH
Q 036820 158 LLMNKLNSANTTISG 172 (651)
Q Consensus 158 SLlDQLnSLnsTLtS 172 (651)
+.+++|..+.+.|..
T Consensus 67 ~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 67 NAAGLIGEAVRALNA 81 (175)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 455666666555544
No 145
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.27 E-value=4.7e+02 Score=23.82 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHH
Q 036820 158 LLMNKLNSANTTISGLGKELQNEKRF 183 (651)
Q Consensus 158 SLlDQLnSLnsTLtSL~keLqnek~t 183 (651)
.+++.++.++..|..+...+..++..
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~ 65 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKK 65 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555544444
No 146
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=20.98 E-value=5.9e+02 Score=24.88 Aligned_cols=131 Identities=16% Similarity=0.305 Sum_probs=66.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhhhhhhhHHhHHHHHHHhHHHHHhh---------------
Q 036820 385 QLKQSKDSCADLETEISRIRAEFAEVKHTLGNSLDEAKRSGEVLAGELFAAKEVLKKASEELQNV--------------- 449 (651)
Q Consensus 385 ~L~~~~~~~~~L~~qiskl~~E~~e~ke~l~~~l~eak~~~~~Ls~El~s~ke~l~k~~eeL~~~--------------- 449 (651)
-|+.+-.--++|=.+|. ...+.++.+.+..-|+.+..= -.+|..-++.+.+++++...+
T Consensus 41 kL~~LEkk~q~LY~qI~--~~~~~~v~~~adqa~~nv~eR----ek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~Kkq 114 (199)
T 2ap3_A 41 KIAELDEKKKKLTEDVN--SKDTAVRGKAVKDLIKNADDR----LKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKE 114 (199)
T ss_dssp HHHHHHHHHHTTTTGGG--CSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 33333333344444444 445555555544444433333 334455566777777766544
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHhHhHHHhHHHHhhhHHHh
Q 036820 450 SHELEATAENRDSLRKELVNIYKKAEATANDLKEQKEIVSSLNKE---LQALEKQTSKDKEARKSLETDLEEATKSLDEM 526 (651)
Q Consensus 450 S~eL~~~~e~rd~L~kEL~d~YKK~E~t~~eL~~ekkiv~tLn~e---L~al~~Q~~~d~EaRk~Le~dLeeaT~SldEm 526 (651)
..+|..+.++|=..=..|.++|+++ |.-||.+...|..+ ++.|..|+-.--.+-+-+.....+=|+-.++.
T Consensus 115 a~~l~~~~k~RY~~~~~l~~~Y~k~------l~~EKeLy~~Lk~k~~~~~~l~eki~~vN~~y~~~~~~FN~yTk~yN~~ 188 (199)
T 2ap3_A 115 VKQLDDVLKEKYKLHSDYAKAYKKA------VNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKV 188 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666655555666666554 44555555555433 45555555555555555544444444444443
Q ss_pred h
Q 036820 527 N 527 (651)
Q Consensus 527 n 527 (651)
+
T Consensus 189 ~ 189 (199)
T 2ap3_A 189 Q 189 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 147
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.65 E-value=53 Score=26.04 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=27.1
Q ss_pred hhhhHhhhhhHHHHhhcccchhhhhhcccc
Q 036820 587 KSLDKRSKKLEEELASAKGEILRLRSQINS 616 (651)
Q Consensus 587 E~~e~r~kkLEeELAsAKGEiLrLR~qi~s 616 (651)
..+..|..+|.+-|..|+++|..|+.+|..
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999864
No 148
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.11 E-value=2.4e+02 Score=24.94 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=38.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHhhhhhhhHHHHHHHHH
Q 036820 336 TIAKFTQEKDDLRKMLDNELGNVKNLKYELQITQETLETTRNEASDLEKQLKQS 389 (651)
Q Consensus 336 ~Ia~L~~e~~~~r~mLd~E~~~~k~L~~~lq~Tqe~L~~sR~e~s~L~~~L~~~ 389 (651)
+.+.|-+.-+....=|+.|+....+=-+-|+..+...+..||++.-|..+|+.-
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345566666666666777776666666667777778888888888888888754
Done!