BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036830
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/649 (39%), Positives = 361/649 (55%), Gaps = 54/649 (8%)
Query: 121 TTRSWDFLAAAAKPAKNTWFNHKYHKAASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWK 180
TTRSWDFL + + + S+IV+GV+DTGIWPESPSF+D+G P +WK
Sbjct: 1 TTRSWDFLGFPLTVPRRS-------QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 181 GVCMESPDFKKSHCNRKLIGAR--HCSRASTNKDNSGSSRDPLGHGTHTASTAAGNYVSN 238
G C S +F+ CNRK+IGAR H R + D +G RD GHGTHTASTAAG VS
Sbjct: 54 GTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGP-RDTNGHGTHTASTAAGGLVSQ 109
Query: 239 AIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGLSNS 298
A +GL GTARGG P +RIA+YK C GCS IL A DDAI DGVDIIS+S+G +N
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 299 EADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTV 358
Y D IAIG+ HA +RG++ SAGN GP FT A+ +PWL +VAAST+DR F + V
Sbjct: 170 R-HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQV 228
Query: 359 LLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKI 418
+GNG++ +G +I N ++ YPL G+ I S + C ++ P +G KI
Sbjct: 229 QIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKG-KI 284
Query: 419 AVAE----------NVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKN 468
V E +++ + + + + + + LP + + + YI S ++
Sbjct: 285 VVCEASFGPHEFFKSLDGAAGVLMTSNTRDY-ADSYPLPSSVLDPNDLLATLRYIYSIRS 343
Query: 469 PTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGG 528
P ATI + TI + APVV FSSRGP T++++KPD++ PGV +LAA P GG
Sbjct: 344 PGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-PSVAPVGG 401
Query: 529 IPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPL 588
I + + + SGTSM+CPH+TG A ++K+ W+ + IKSALMTTA +P+
Sbjct: 402 I---RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTA-------SPM 451
Query: 589 TNSSGNNANPHEMGAGEINPLKALNPGLVFKTTIKDYLRFLCYYGYSKKNIRSMTNTTFN 648
N+ N G+G +NPLKA+ PGLV+ DY++FLC GY+ + +R +T
Sbjct: 452 -NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA 510
Query: 649 CPKKSSAKLXXXXXXXXXXXXKLARQGAIRTVKRTVTNVGSPNATYISMVNAPSGLAVKV 708
C ++ ++ Q + RT+T+V +TY +M++AP GL + V
Sbjct: 511 CTSGNTGRVWDLNYPSFGLSVS-PSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISV 569
Query: 709 FPQKLTFVEGI-----IKLSFKASFFGKEASSGYNYGSITWSDDRHSVR 752
P L+F G+ L+ + S G S+ S+ WSD H VR
Sbjct: 570 NPNVLSF-NGLGDRKSFTLTVRGSIKGFVVSA-----SLVWSDGVHYVR 612
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 243/652 (37%), Positives = 339/652 (51%), Gaps = 35/652 (5%)
Query: 121 TTRSWDFLAAAAKPAKNTWFNHKYHKAASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWK 180
TT + DFL P+ W D+++ V+D+GIWPES SF D GM EIP RWK
Sbjct: 1 TTHTSDFLKL--NPSSGLW---PASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 181 GVCMESPDFKKSHCNRKLIGARHCSRASTNKDNS-----GSSRDPLGHGTHTASTAAGNY 235
G+C F S CNRKLIGA + ++ D + S+RD GHGTH AS AGN+
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 236 VSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGL 295
+FG A GTARG +P +R+A YK G + ++ A+D A+ DGVD+ISIS G
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 296 SNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQ 355
D I+I + A +GV+V SAGN GP ++ N +PW+ VA+ DR F
Sbjct: 176 --RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFA 233
Query: 356 STVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNST--LVSQASQCLYTTLYPMDT 413
T+ LGNG I+G ++ + + P+ Y K ++ S+ L+SQ T+ D
Sbjct: 234 GTLTLGNGLKIRGWSL-FPARAFVRDSPVIYNKTLSDCSSEELLSQVENP-ENTIVICDD 291
Query: 414 RG---RKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKNPT 470
G ++ + + IFI++D ++ + P V K G ++INY+ ++ PT
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPT 351
Query: 471 ATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIP 530
ATI T +PAPVVA S+RGP I KPD+ APGV +LAA P
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 531 AGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTN 590
Y L SGTSMA PH G AA +K+ +W+ S I+SA+MTTA DNT P+ +
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 591 SSGNN-ANPHEMGAGEINPLKALNPGLVFKTTIKDYLRFLCYYGYSKKNIRSM--TNTTF 647
S N A P +MGAG ++P +AL+PGLV+ T +DY+ LC ++++ +++ ++ +
Sbjct: 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH 531
Query: 648 NCPKKSSAKL---XXXXXXXXXXXXKLARQGAIRTVKRTVTNVGSPNATYISMVNAPSGL 704
NC SA L L Q KRTVTNVG ATY + + AP
Sbjct: 532 NC-SNPSADLNYPSFIALYSIEGNFTLLEQ----KFKRTVTNVGKGAATYKAKLKAPKNS 586
Query: 705 AVKVFPQKLTFVEGIIKLSFKAS--FFGKEASSGYNYGSITWSDD--RHSVR 752
+ V PQ L F K S+ + + G E S N GSITW + HSVR
Sbjct: 587 TISVSPQILVFKNKNEKQSYTLTIRYIGDEGQS-RNVGSITWVEQNGNHSVR 637
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 175/425 (41%), Gaps = 73/425 (17%)
Query: 223 HGTHTASTAAGNYVSNAIY-FGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDA 281
HGTH + +GN S + L G R+ + + A QAI DA
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYA---QAIRDA 153
Query: 282 IHDGVDIISISIGLSNSEADYMN--DPIAIGALHAQQRGVVVICSAGNDGPY-------- 331
++ G +I++S G N+ Y N D +A+ +GV ++ SAGND +
Sbjct: 154 VNLGAKVINMSFG--NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPL 211
Query: 332 ----PFTVANT---APWLFTVAASTIDRDFQ--STVLLGNGKAIKGTAISLSNLSRSKTY 382
+ V T A TVA+ + D+ +TV + +A + +S + +K Y
Sbjct: 212 ADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPNKAY 271
Query: 383 PLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTE 442
AY + +D + KIA A+ A G++ ++ +K +P E
Sbjct: 272 DYAYANRGMKEDDFKDVKGKIALIERGDIDFKD-KIANAKKAGAVGVLIYDNQDKGFPIE 330
Query: 443 R---GILPYAEVGKVAGFRIINYINSNK----NPTATILPTVTIPRHRPAPVVAYFSSRG 495
+P A + + G + + NS K N T +LPT + + ++ FSS G
Sbjct: 331 LPNVDQMPAAFISRKDGLLLKD--NSKKTITFNATPKVLPTASDTK------LSRFSSWG 382
Query: 496 PGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAA 555
L + +KPD+AAPG +L+++ A K YA SGTSM+ P V G
Sbjct: 383 --LTADGNIKPDIAAPGQDILSSV-----------ANNK---YAKLSGTSMSAPLVAGIM 426
Query: 556 AFI-KSVRRKW-------TYSMIKSALMTTAT-VYDNTGTPLTNSSGNNANPHEMGAGEI 606
+ K ++ + K LM++AT +YD +P + GAG +
Sbjct: 427 GLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY-------FSPRQQGAGAV 479
Query: 607 NPLKA 611
+ KA
Sbjct: 480 DAKKA 484
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 29/131 (22%)
Query: 487 VVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRS-GTS 545
V+ FSSRGP +N LKP+V APG ++AA R G G+ Y + GT+
Sbjct: 308 VITDFSSRGP--TADNRLKPEVVAPGNWIIAA------RASGTSMGQPINDYYTAAPGTA 359
Query: 546 MACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEM---- 601
MA PHV G AA + WT +K+AL+ TA + P E+
Sbjct: 360 MATPHVAGIAALLLQAHPSWTPDKVKTALIETADI---------------VKPDEIADIA 404
Query: 602 -GAGEINPLKA 611
GAG +N KA
Sbjct: 405 YGAGRVNAYKA 415
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 219 DPLGHGTHTASTAAGN-YVSNAIYFGLAGGTARGGSPFSRIASYKACK-EGGCSGAAILQ 276
D GHGTH AS AAG SN Y G+A P +++ K +G S + I+
Sbjct: 176 DDNGHGTHVASIAAGTGAASNGKYKGMA--------PGAKLVGIKVLNGQGSGSISDIIN 227
Query: 277 AIDDAIHD----GVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYP 332
+D A+ + G+ +I++S+G S S D ++ +A G+VV+ +AGN GP
Sbjct: 228 GVDWAVQNKDKYGIKVINLSLGSSQSSDG--TDSLSQAVNNAWDAGLVVVVAAGNSGPNK 285
Query: 333 FTVANTAPWLFTVAASTIDR-----DFQS 356
+TV + A + +D+ DF S
Sbjct: 286 YTVGSPAAASKVITVGAVDKYDVITDFSS 314
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 47/91 (51%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PGG Y SGTSMA
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTL------PGG--------KYGALSGTSMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L TAT
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 22/96 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGTSMA
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTL------PGN--------KYGAKSGTSMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT 584
PHV GAAA I S WT + ++S+L T T N+
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PGG Y SGT+MA
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTL------PGG--------KYGALSGTAMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L TAT
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTL------PGN--------KYGAKSGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGTSMA
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTL------PGN--------KYGAKSGTSMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTL------PGN--------KYGAKSGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++++ + PG Y +SGT+MA
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTL------PGN--------KYGAKSGTAMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++++ + PG Y +SGT+MA
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTL------PGN--------KYGAKSGTAMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 158/414 (38%), Gaps = 51/414 (12%)
Query: 223 HGTHTASTAAGNYVSNAIY-FGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDA 281
HGTH + +GN S + L G R+ + + A QAI DA
Sbjct: 88 HGTHVSGILSGNAPSETKEPYRLEGAXPEAQLLLXRVEIVNGLADYARNYA---QAIRDA 144
Query: 282 IHDGVDIISISIGLSNSEADYMN--DPIAIGALHAQQRGVVVICSAGNDGPY-------- 331
I+ G +I+ S G N+ Y N D +A+ +GV ++ SAGND +
Sbjct: 145 INLGAKVINXSFG--NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPL 202
Query: 332 ----PFTVANT---APWLFTVAASTIDRDFQSTVLL--GNGKAIKGTAISLSNLSRSKTY 382
+ V T A TVA+ + D+ TV + + + + +S + +K Y
Sbjct: 203 ADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPNKAY 262
Query: 383 PLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTE 442
AY + +D + + + LI+ N D K +P E
Sbjct: 263 DYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQD-KGFPIE 321
Query: 443 RGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPV---VAYFSSRGPGLP 499
LP + A + + NP TI T P+ P ++ FSS G L
Sbjct: 322 ---LPNVDQXPAAFISRKDGLLLKDNPQKTITFNAT-PKVLPTASGTKLSRFSSWG--LT 375
Query: 500 TENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI- 558
+ +KPD+AAPG +L+++ A K YA SGTS + P V G +
Sbjct: 376 ADGNIKPDIAAPGQDILSSV-----------ANNK---YAKLSGTSXSAPLVAGIXGLLQ 421
Query: 559 KSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNA-NPHEMGAGEINPLKA 611
K ++ L V ++ T L + +P + GAG ++ KA
Sbjct: 422 KQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAKSGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGT MA
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTL------PGN--------KYGAKSGTXMAS 215
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y SGTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTL------PGN--------KYGAYSGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGT MA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAKSGTXMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y SGTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTL------PGN--------KYGAYSGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +SGT MA
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWSTL------PGN--------KYGAKSGTXMAS 212
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 213 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 243
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLQNTTT 255
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLQNTTT 255
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS G L DV APGV++ + + PGG TY +GTSMA
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTL------PGG--------TYGAYNGTSMAT 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++ L +TAT
Sbjct: 225 PHVAGAAALILSKHPTWTNAQVRDRLESTAT 255
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 58/240 (24%)
Query: 163 ESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLG 222
++P+ + QG S K ++S SH + + G + TN GSS
Sbjct: 12 KAPALHSQGY--TGSNVKVAVIDS-GIDSSHPDLNVRGGASFVPSETNPYQDGSS----- 63
Query: 223 HGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKACKEGGCSGAA-ILQAIDD 280
HGTH A T A ++N+I G+A P + + + K G + I+ I+
Sbjct: 64 HGTHVAGTIAA--LNNSIGVLGVA--------PSASLYAVKVLDSTGSGQYSWIINGIEW 113
Query: 281 AIHDGVDIISISIGLSNSEADYMNDPIAIGAL-----HAQQRGVVVICSAGNDGP----- 330
AI + +D+I++S+G P AL A G+VV +AGN+G
Sbjct: 114 AISNNMDVINMSLG----------GPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTS 163
Query: 331 -------YPFTVA----NTAPWL--FTVAASTID-----RDFQSTVLLGNGKAIKGTAIS 372
YP T+A N+A F+ A S +D QST+ G A GT+++
Sbjct: 164 TVGYPAKYPSTIAVGAVNSANQRASFSSAGSELDVMAPGVSIQSTLPGGTYGAYNGTSMA 223
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTSMA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 22/96 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS G L DV APGV++ + + PGG TY +GT MA
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQSTL------PGG--------TYGAYNGTXMAT 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT 584
PHV GAAA I S WT + ++ L +TAT N+
Sbjct: 225 PHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 35/174 (20%)
Query: 163 ESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLG 222
++P+ + QG S K ++S SH + + G + TN GSS
Sbjct: 12 KAPALHSQGY--TGSNVKVAVIDS-GIDSSHPDLNVRGGASFVPSETNPYQDGSS----- 63
Query: 223 HGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKACKEGGCSGAA-ILQAIDD 280
HGTH A T A ++N+I G+A P + + + K G + I+ I+
Sbjct: 64 HGTHVAGTIAA--LNNSIGVLGVA--------PSASLYAVKVLDSTGSGQYSWIINGIEW 113
Query: 281 AIHDGVDIISISIGLSNSEADYMNDPIAIGAL-----HAQQRGVVVICSAGNDG 329
AI + +D+I++S+G P AL A G+VV +AGN+G
Sbjct: 114 AISNNMDVINMSLG----------GPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 22/96 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS G L DV APGV++ + + PGG TY +GT MA
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTL------PGG--------TYGAYNGTCMAT 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT 584
PHV GAAA I S WT + ++ L +TAT N+
Sbjct: 225 PHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 163 ESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLG 222
++P+ + QG S K ++S SH + + G + TN GSS
Sbjct: 12 KAPALHSQGY--TGSNVKVAVIDS-GIDSSHPDLNVRGGASFVPSETNPYQDGSS----- 63
Query: 223 HGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAA-ILQAIDDA 281
HGTH A T A ++N+I G SP + + + K G + I+ I+ A
Sbjct: 64 HGTHVAGTIAA--LNNSI-------GVLGVSPSASLYAVKVLDSTGSGQYSWIINGIEWA 114
Query: 282 IHDGVDIISISIGLSNSEADYMNDPIAIGAL-----HAQQRGVVVICSAGNDG 329
I + +D+I++S+G P AL A G+VV +AGN+G
Sbjct: 115 ISNNMDVINMSLG----------GPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y SGT MA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYSGTXMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV G AA +K W+ I++ L TAT NT G+ L N+
Sbjct: 219 PHVAGVAALVKQKNPSWSNVQIRNHLKNTATGLGNTNLYGSGLVNA 264
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 25/182 (13%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K G S ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PSAELYAVKVLGASGSGSVSS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 331 -YPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKA 389
YP AN V A+ + + S G G I +++ + TY G +
Sbjct: 160 SYPARYANA----MAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTS 215
Query: 390 IA 391
+A
Sbjct: 216 MA 217
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 25/182 (13%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K G S ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PNAELYAVKVLGASGSGSVSS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 331 -YPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKA 389
YP AN V A+ + + S G G I +++ + TY G +
Sbjct: 160 SYPARYANA----MAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTS 215
Query: 390 IA 391
+A
Sbjct: 216 MA 217
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 25/182 (13%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K GG S ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PNAELYAVKVLGASGGGSNSS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 331 -YPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKA 389
YP AN V A+ + + S G G I +++ + TY G +
Sbjct: 160 SYPARYANA----MAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTS 215
Query: 390 IA 391
+A
Sbjct: 216 MA 217
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y SGT MA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYSGTXMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K +G + ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PSAELYAVKVLGADGRGAISS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGASSI 159
Query: 331 -YPFTVAN 337
YP AN
Sbjct: 160 SYPARYAN 167
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GTSMA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTSMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K G S ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PSAELYAVKVLGASGSGSVSS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 331 -YPFTVAN 337
YP AN
Sbjct: 160 SYPARYAN 167
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GT MA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTXMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GT MA
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTXMAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GT MA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTXMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKAC-KEGGCSGAA 273
S++D GHGTH A T A ++N+I G+A P + + + K G S ++
Sbjct: 55 STQDGNGHGTHVAGTIAA--LNNSIGVLGVA--------PNAELYAVKVLGASGSGSVSS 104
Query: 274 ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP--- 330
I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 331 -YPFTVAN 337
YP AN
Sbjct: 160 SYPARYAN 167
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GT MA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTXMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 23/129 (17%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKACKEGGCSGA-- 272
S++D GHGTH A T A + N+I G+A P + + + K G SGA
Sbjct: 55 STQDGNGHGTHVAGTIAA--LDNSIGVLGVA--------PSAELYAVKVLGASG-SGAIS 103
Query: 273 AILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP-- 330
+I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN+G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNEGAGS 158
Query: 331 --YPFTVAN 337
YP AN
Sbjct: 159 IDYPARYAN 167
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GT MA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTXMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FS G GL D+ APGV V + PG +TYA +GT MA
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNV------QSTYPG--------STYASLNGTXMAT 218
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNT---GTPLTNS 591
PHV GAAA +K W+ I++ L TAT +T G+ L N+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNA 264
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 23/129 (17%)
Query: 216 SSRDPLGHGTHTASTAAGNYVSNAI-YFGLAGGTARGGSPFSRIASYKACKEGGCSGA-- 272
S++D GHGTH A T A + N+I G+A P + + + K G SGA
Sbjct: 55 STQDGNGHGTHVAGTIAA--LDNSIGVLGVA--------PSAELYAVKVLGASG-SGAIS 103
Query: 273 AILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGP-- 330
+I Q ++ A ++G+ + ++S+G S S + + + A RGV+V+ ++GN G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNSGAGS 158
Query: 331 --YPFTVAN 337
YP AN
Sbjct: 159 ISYPARYAN 167
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS GP L DV APGV++ + + PG Y +GTS A
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTL------PGN--------KYGAYNGTSXAS 224
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S WT + ++S+L T T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
VA FSSRGP + +KPDV APG +L+A P + YA GTSMA
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLA--PDSSFWANHDSKYAYMGGTSMA 257
Query: 548 CPHVTGAAA-----FIKSVRRKWTYSMIKSALMTTA 578
P V G A F+K+ S++K+AL+ A
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GTSMA PHV GAAA I S + S +++ L +TAT
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI----KSVR 562
D+AAPG +L+ + RP Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILSTVDSGTRRP-------VSDAYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 563 RKWTYSMIKSALMTTATVYD 582
+ T + +K L++T + ++
Sbjct: 298 KNLTPAELKDVLVSTTSPFN 317
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI----KSVR 562
D+AAPG +L+ + RP Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILSTVDSGTRRP-------VSDAYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 563 RKWTYSMIKSALMTTATVYD 582
+ T + +K L++T + ++
Sbjct: 298 KNLTPAELKDVLVSTTSPFN 317
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI----KSVR 562
D+AAPG +L+ + RP Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILSTVDSGTRRP-------VSDAYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 563 RKWTYSMIKSALMTTATVYD 582
+ T + +K L++T + ++
Sbjct: 298 KNLTPAELKDVLVSTTSPFN 317
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 537 TYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
TYA +GT MA PHV GAAA I S + S +++ L +TAT
Sbjct: 212 TYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWT 566
DVAAPG ++ + +TYA SGTSMA PHV G A + S R +
Sbjct: 201 DVAAPGSSIYSTY--------------PTSTYASLSGTSMATPHVAGVAGLLASQGR--S 244
Query: 567 YSMIKSALMTTATVYDNTGT 586
S I++A+ TA TGT
Sbjct: 245 ASNIRAAIENTADKISGTGT 264
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPG------GIPAGEKPATYALR 541
VA FSSR G+ V APGV +L+ VP D G +PA TY
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILST-VPGEDSIGYEGHNENVPA-TNGGTYDYY 377
Query: 542 SGTSMACPHVTGAAAFI 558
GTSMA PHVTG A +
Sbjct: 378 QGTSMAAPHVTGVVAVL 394
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
VA FSSRGP + +KPDV APG +L+A P + YA GTS A
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLA--PDSSFWANHDSKYAYXGGTSXA 257
Query: 548 CPHVTGAAA-----FIKSVRRKWTYSMIKSALMTTA 578
P V G A F+K+ S++K+AL+ A
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWT 566
DV APGV +++ I G + YA SGTSMA PHV G AA + S R
Sbjct: 202 DVVAPGVDIVSTIT-----------GNR---YAYMSGTSMASPHVAGLAALLASQGRNNI 247
Query: 567 YSMIKSALMTTATVYDNTGT 586
I+ A+ TA TGT
Sbjct: 248 --EIRQAIEQTADKISGTGT 265
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 20/122 (16%)
Query: 212 DNSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSG 271
DN D HGTH A AA +NA G+A G +P +RI + +A +G
Sbjct: 61 DNDYDPMDLNNHGTHVAGIAAAE-TNNAT--GIA-----GMAPNTRILAVRALDR---NG 109
Query: 272 AAILQAIDDAI----HDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGN 327
+ L I DAI G ++I++S+G D + +A +G VV+ +AGN
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLSLGC-----DCHTTTLENAVNYAWNKGSVVVAAAGN 164
Query: 328 DG 329
+G
Sbjct: 165 NG 166
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 536 ATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGT 586
+TYA SGTSMA PHV G A + S R + S I++A+ TA TGT
Sbjct: 216 STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT 264
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
A FSS G L +V APGV+V + P TY +GTSMA
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYS---TYPSN-----------TYTSLNGTSMAS 223
Query: 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579
PHV GAAA I S + S +++ L +TAT
Sbjct: 224 PHVAGAAALILSKYPTLSASQVRNRLSSTAT 254
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 33/148 (22%)
Query: 189 FKKSHCNRKLIG-ARHCSRASTNKDNSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGG 247
SH + K++G A S S N D +G HGTH A T A + + G+A
Sbjct: 35 IASSHTDLKVVGGASFVSGESYNTDGNG-------HGTHVAGTVAALDNTTGV-LGVA-- 84
Query: 248 TARGGSPFSRIASYKACKEGGC-SGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDP 306
P + + K G S +AI+ I+ A +G+D+I++S+G P
Sbjct: 85 ------PNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLG----------GP 128
Query: 307 IAIGAL-----HAQQRGVVVICSAGNDG 329
AL A G+VV+ +AGN G
Sbjct: 129 SGSTALKQAVDKAYASGIVVVAAAGNSG 156
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 478 TIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPAT 537
T P+ + AP FS+ G + +AAPG +L+ I AG ++
Sbjct: 229 TTPKGKRAP----FSNYG--------ARVHLAAPGTNILSTIDVGQ-------AGPVRSS 269
Query: 538 YALRSGTSMACPHVTGAAAFI----KSVRRKWTYSMIKSALMTTATVYD 582
Y +++GTSMA PHV+G AA + S+ + T S + L+ T + ++
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFN 318
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 478 TIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPAT 537
T P+ + AP FS+ G + +AAPG +L+ I AG ++
Sbjct: 229 TTPKGKRAP----FSNYG--------ARVHLAAPGTNILSTIDVGQ-------AGPVRSS 269
Query: 538 YALRSGTSMACPHVTGAAAFI----KSVRRKWTYSMIKSALMTTATVYD 582
Y +++GTSMA PHV+G AA + S+ + T S + L+ T + ++
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFN 318
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 31/158 (19%)
Query: 181 GVCMESPDFKKS--HCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTAAGNYVSN 238
GV PD + C + + A+T +NS + R+ GHGTH A TA + S+
Sbjct: 36 GVNTSHPDLVNNVEQC-------KDFTGATTPINNSCTDRN--GHGTHVAGTALADGGSD 86
Query: 239 -AIYFGLAGGTARGGSPFSRIASYKACKEGGCS-----GAAILQAIDDAIHDGVD-IISI 291
A +G+A P + + +YK + G AAI A D A G IIS+
Sbjct: 87 QAGIYGVA--------PDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM 138
Query: 292 SIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDG 329
S+G S + N I+ +A +GV+++ +AGN G
Sbjct: 139 SLGSSAN-----NSLISSAVNYAYSKGVLIVAAAGNSG 171
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYD 582
Y SGTSMA PHV+G AA I + + + ++S L A D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 31/158 (19%)
Query: 181 GVCMESPDFKKS--HCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTAAGNYVSN 238
GV PD + C + + A+T +NS + R+ GHGTH A TA + S+
Sbjct: 36 GVNTSHPDLVNNVEQC-------KDFTGATTPINNSCTDRN--GHGTHVAGTALADGGSD 86
Query: 239 -AIYFGLAGGTARGGSPFSRIASYKACKEGGCS-----GAAILQAIDDAIHDGVD-IISI 291
A +G+A P + + +YK + G AAI A D A G IIS+
Sbjct: 87 QAGIYGVA--------PDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM 138
Query: 292 SIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDG 329
S+G S + N I+ +A +GV+++ +AGN G
Sbjct: 139 SLGSSAN-----NSLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 487 VVAYFSSRGPGLPTENIL--KPDVAAPGVAVLAAIVPRPDRPGGIP-----------AGE 533
++ Y +S PGL ++ D+ P V+V DR G+ + +
Sbjct: 306 IIVYSNSALPGLQNPFLVDANSDITVPSVSV--------DRATGLALKAKLGQSTTVSNQ 357
Query: 534 KPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTA 578
Y +GTSMA PHV+G A + S + + S +++AL TA
Sbjct: 358 GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 488 VAYFSSRGPGLPTEN--ILKPDV--AAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSG 543
VA FSSRG + I K DV +APG AV + GG YA SG
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD-----GG---------YATISG 247
Query: 544 TSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYD 582
TSMA PH G AA I + + ++ L T A+V D
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 48/172 (27%)
Query: 181 GVCMESPDFKKS--HCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTAAGNYVSN 238
GV PD + C +G DNS + R GHGTH A +A N +
Sbjct: 36 GVNTNHPDLSNNVEQCKDFTVGTNFT-------DNSCTDRQ--GHGTHVAGSALANGGTG 86
Query: 239 AIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGLSNS 298
+ +G+A P + + +YK + G SG A D I+ +I +
Sbjct: 87 SGVYGVA--------PEADLWAYKVLGDDG-SGYA-------------DDIAEAIRHAGD 124
Query: 299 EADYMNDPIAIGAL---------------HAQQRGVVVICSAGNDGPYPFTV 335
+A +N + I +A +GV++I +AGN GP P ++
Sbjct: 125 QATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGPKPGSI 176
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 326
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 327 TPHVSGVVALIQA 339
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 219 DPLGHGTHTASTAAGNYVSNAI-YFGLAGGT---------ARGGSPFSRIASYKACKEGG 268
D GHGTH T A ++N I G+A G ARG +S IA G
Sbjct: 149 DQNGHGTHVIGTIAA--LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILG 206
Query: 269 CSGAA------ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVI 322
G A I+ D D ++IS+S+G ++ Y+ D I + A G+V++
Sbjct: 207 PDGVADKDGDGIIAG--DPDDDAAEVISMSLG-GPADDSYLYDMI----IQAYNAGIVIV 259
Query: 323 CSAGNDG-PYP 332
++GN+G P P
Sbjct: 260 AASGNEGAPSP 270
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 326
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 327 TPHVSGVVALIQA 339
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 219 DPLGHGTHTASTAAGNYVSNAI-YFGLAGGT---------ARGGSPFSRIASYKACKEGG 268
D GHGTH T A ++N I G+A G ARG +S IA G
Sbjct: 149 DQNGHGTHVIGTIAA--LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILG 206
Query: 269 CSGAA------ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVI 322
G A I+ D D ++IS+S+G ++ Y+ D I + A G+V++
Sbjct: 207 PDGVADKDGDGIIAG--DPDDDAAEVISMSLG-GPADDSYLYDMI----IQAYNAGIVIV 259
Query: 323 CSAGNDG-PYP 332
++GN+G P P
Sbjct: 260 AASGNEGAPSP 270
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 326
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 327 TPHVSGVVALIQA 339
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 219 DPLGHGTHTASTAAGNYVSNAI-YFGLAGGT---------ARGGSPFSRIASYKACKEGG 268
D GHGTH T A ++N I G+A G ARG +S IA G
Sbjct: 149 DQNGHGTHVIGTIAA--LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILG 206
Query: 269 CSGAA------ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVI 322
G A I+ DA D ++IS+S+G ++ Y+ D I + A G+V++
Sbjct: 207 PDGVADKDGDGIIAGDPDA--DAAEVISMSLG-GPADDSYLYDMI----IQAYNAGIVIV 259
Query: 323 CSAGNDG-PYP 332
++GN+G P P
Sbjct: 260 AASGNEGAPSP 270
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 326
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 327 TPHVSGVVALIQA 339
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 323
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 324 TPHVSGVVALIQA 336
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 219 DPLGHGTHTASTAAGNYVSNAI-YFGLAGGT---------ARGGSPFSRIASYKACKEGG 268
D GHGTH T A ++N I G+A G ARG +S IA G
Sbjct: 146 DQNGHGTHVIGTIAA--LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILG 203
Query: 269 CSGAA------ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVI 322
G A I+ D D ++IS+S+G ++ Y+ D I + A G+V++
Sbjct: 204 PDGVADKDGDGIIAG--DPDDDAAEVISMSLG-GPADDSYLYDMI----IQAYNAGIVIV 256
Query: 323 CSAGNDG-PYP 332
++GN+G P P
Sbjct: 257 AASGNEGAPSP 267
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 248
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 249 TPHVSGVVALIQA 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 257
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 258 TPHVSGVVALIQA 270
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 246
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTAMA 257
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 258 TPHVSGVVALIQA 270
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 219 DPLGHGTHTASTAAGNYVSNAI-YFGLAGGT---------ARGGSPFSRIASYKACKEGG 268
D GHGTH T A ++N I G+A G ARG +S IA A G
Sbjct: 80 DQNGHGTHVIGTIAA--LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILG 137
Query: 269 CSGAA------ILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVI 322
G A I+ D D ++IS+S+G ++ Y+ D I + A G+V++
Sbjct: 138 PDGVADKDGDGIIAG--DPDDDAAEVISMSLG-GPADDSYLYDMI----IQAYNAGIVIV 190
Query: 323 CSAGNDG-PYP 332
++GN+G P P
Sbjct: 191 AASGNEGAPSP 201
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 19/78 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI-----KSV 561
D+ APGV GI + + YA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGV--------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAF 271
Query: 562 RRKWTYSMIKSALMTTAT 579
+R + + I + L+ AT
Sbjct: 272 KRSLSETEIYAQLVRRAT 289
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 19/78 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI-----KSV 561
D+ APGV GI + + YA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGV--------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAF 271
Query: 562 RRKWTYSMIKSALMTTAT 579
+R + + I + L+ AT
Sbjct: 272 KRSLSETEIYAQLVRRAT 289
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 19/78 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI-----KSV 561
D+ APGV GI + + YA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGV--------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAF 271
Query: 562 RRKWTYSMIKSALMTTAT 579
+R + + I + L+ AT
Sbjct: 272 KRSLSETEIYAQLVRRAT 289
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 40/180 (22%)
Query: 152 VIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNK 211
+IGVIDTG + P ++ +G GV + + D+ N
Sbjct: 44 IIGVIDTGCQVDHPDLAERIIG-------GVNL-TTDYGGDETNFS-------------- 81
Query: 212 DNSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSG 271
DN+G HGTH A T A + G+ G + + S E G
Sbjct: 82 DNNG-------HGTHVAGTVAAAETGS----GVVGVAPKADLFIIKALSGDGSGEMGWIA 130
Query: 272 AAILQAID--DAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDG 329
AI A+D + + II++S+G ++++ ++D + +A V V+C+AGN+G
Sbjct: 131 KAIRYAVDWRGPKGEQMRIITMSLG-GPTDSEELHDAVK----YAVSNNVSVVCAAGNEG 185
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 30/144 (20%)
Query: 208 STNKDNSGSSRDPLG----HGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKA 263
S N + G+ + +G HGTH +S A+GN+ S + G +P ++I S
Sbjct: 253 SVNVHDEGNVLEVVGXSSPHGTHVSSIASGNHSSRDV---------DGVAPNAKIVS-XT 302
Query: 264 CKEGGC----SGAAILQA---IDDAIHDG--VDIISISIGLSNSEADYMNDPIAIGALHA 314
+G +G A+++A + + DG +D+I+ S G A++ N IG L
Sbjct: 303 IGDGRLGSXETGTALVRAXTKVXELCRDGRRIDVINXSYG---EHANWSNSG-RIGELXN 358
Query: 315 Q---QRGVVVICSAGNDGPYPFTV 335
+ + GVV + SAGN GP TV
Sbjct: 359 EVVNKYGVVWVASAGNHGPALCTV 382
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 540 LRSGTSMACPHVTGAAAF----IKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNN 595
L +GTS A PHV GA A +K +++ IK A+ TAT
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL------------GY 504
Query: 596 ANPHEMGAGEINPLKALNPGLVFKTTIKDYLRFLCYYG 633
+P G G +N KA + + + LRF G
Sbjct: 505 VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVG 542
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 19/78 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFI-----KSV 561
D+ APGV GI + + YA SGT+MA PHV GA A I +
Sbjct: 208 DIVAPGV--------------GIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAF 253
Query: 562 RRKWTYSMIKSALMTTAT 579
+R + + I + L+ AT
Sbjct: 254 KRSLSETEIYAQLVRRAT 271
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 40/180 (22%)
Query: 152 VIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNK 211
+IGVIDTG + P ++ +G GV + + D+ N
Sbjct: 26 IIGVIDTGCQVDHPDLAERIIG-------GVNL-TTDYGGDETNFS-------------- 63
Query: 212 DNSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSG 271
DN+G HGTH A T A + G+ G + + S E G
Sbjct: 64 DNNG-------HGTHVAGTVAAAETGS----GVVGVAPKADLFIIKALSGDGSGEMGWIA 112
Query: 272 AAILQAID--DAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDG 329
AI A+D + + II++S+G ++++ ++D + +A V V+C+AGN+G
Sbjct: 113 KAIRYAVDWRGPKGEQMRIITMSLG-GPTDSEELHDAVK----YAVSNNVSVVCAAGNEG 167
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTXMA 246
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 24/73 (32%)
Query: 488 VAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMA 547
+A FS+R +P+V+APGV +L+ PD +Y GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILST---YPDD-----------SYETLMGTCMA 246
Query: 548 CPHVTGAAAFIKS 560
PHV+G A I++
Sbjct: 247 TPHVSGVVALIQA 259
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 219 DPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAI 278
D GHGT + + N G G +P ++ Y+ + +AI
Sbjct: 173 DRKGHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRVFGSKKTELLWVSKAI 220
Query: 279 DDAIHDGVDIISISIGL-----SNSEADYMNDP-IAIGAL-----HAQQRGVVVICSAGN 327
A +DG +I+IS+G N + D + AL +A+++ +V+ +AGN
Sbjct: 221 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 280
Query: 328 DG 329
DG
Sbjct: 281 DG 282
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNAN 597
Y ++GTS+A P V+GA A I Y + K +Y + GT S NN
Sbjct: 376 YIYQAGTSLATPKVSGALALIID-----KYHLEKHPDKAIELLYQH-GT-----SKNNKP 424
Query: 598 PHEMGAGEINPLKALN 613
G GE++ KALN
Sbjct: 425 FSRYGHGELDVYKALN 440
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 219 DPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAI 278
D GHGT + + N G G +P ++ Y+ + +AI
Sbjct: 197 DRKGHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRVFGSKKTELLWVSKAI 244
Query: 279 DDAIHDGVDIISISIGL-----SNSEADYMNDP-IAIGAL-----HAQQRGVVVICSAGN 327
A +DG +I+IS+G N + D + AL +A+++ +V+ +AGN
Sbjct: 245 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 304
Query: 328 DG 329
DG
Sbjct: 305 DG 306
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 526 PGGIPAGEKPATYALR-SGTSMACPHVTGAAAFIKSVR----RKWTYSMIKSALMTTAT 579
PG G KP +R SGTS A P V+G AA + S++ K +K+AL+ +AT
Sbjct: 204 PGKDILGAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASAT 262
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
+FS+ G E IL APG +L G P E+P +GTSMA
Sbjct: 254 CHFSNWGGNNTKEGIL-----APGEEIL----------GAQPCTEEPVRL---TGTSMAA 295
Query: 549 PHVTGAAAFIKSVR----RKWTYSMIKSALMTTATVYD 582
P +TG +A + S++ + +++AL+ TA D
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
+FS+ G E IL APG +L G P E+P +GTSMA
Sbjct: 254 CHFSNWGGNNTKEGIL-----APGEEIL----------GAQPCTEEPVRL---TGTSMAA 295
Query: 549 PHVTGAAAFIKSVR----RKWTYSMIKSALMTTATVYD 582
P +TG +A + S++ + +++AL+ TA D
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 489 AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548
+FS+ G E IL APG +L G P E+P +GTSMA
Sbjct: 236 CHFSNWGGNNTKEGIL-----APGEEIL----------GAQPCTEEPVRL---TGTSMAA 277
Query: 549 PHVTGAAAFIKSVR----RKWTYSMIKSALMTTATVYD 582
P +TG +A + S++ + +++AL+ TA D
Sbjct: 278 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 315
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 327 NDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAY 386
N +P + T + VA T+D ++Q+ ++ G+ I T S NL++ K+
Sbjct: 132 NPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIR 191
Query: 387 GKAIAVNS 394
G + V S
Sbjct: 192 GTEVKVCS 199
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRR 563
D+ PG ++L+ + R SGTSMA PHV G AA++ ++ +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS--------------ISGTSMATPHVAGLAAYLMTLGK 242
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 507 DVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRR 563
D+ PG ++L+ + R SGTSMA PHV G AA++ ++ +
Sbjct: 200 DIFGPGTSILSTWIGGSTRS--------------ISGTSMATPHVAGLAAYLMTLGK 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,756,005
Number of Sequences: 62578
Number of extensions: 902596
Number of successful extensions: 2409
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 227
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)