Query 036830
Match_columns 760
No_of_seqs 444 out of 3166
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 4.2E-51 9.1E-56 438.3 28.4 298 117-579 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.7E-50 5.8E-55 448.1 22.0 302 140-634 303-631 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 2E-48 4.4E-53 407.9 23.8 268 148-613 4-274 (275)
4 cd07497 Peptidases_S8_14 Pepti 100.0 2.9E-48 6.2E-53 412.6 24.1 288 148-578 1-311 (311)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 4.9E-48 1.1E-52 402.1 23.8 240 144-581 1-253 (255)
6 cd07478 Peptidases_S8_CspA-lik 100.0 8.9E-48 1.9E-52 429.1 27.1 393 148-604 3-455 (455)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 5.5E-47 1.2E-51 413.9 27.1 310 143-613 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.4E-46 3E-51 404.5 26.7 292 140-619 2-304 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 5.7E-46 1.2E-50 388.4 24.6 245 143-583 2-254 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 9.2E-46 2E-50 381.5 23.7 234 151-604 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 4.8E-45 1E-49 389.9 27.9 282 148-611 1-295 (295)
12 cd07483 Peptidases_S8_Subtilis 100.0 2E-45 4.4E-50 390.2 24.2 266 149-579 1-291 (291)
13 cd07481 Peptidases_S8_Bacillop 100.0 2.6E-44 5.6E-49 377.5 25.2 247 148-579 1-264 (264)
14 cd07493 Peptidases_S8_9 Peptid 100.0 2.1E-44 4.5E-49 377.7 24.0 245 150-579 1-261 (261)
15 KOG1153 Subtilisin-related pro 100.0 8.8E-45 1.9E-49 376.2 20.1 333 28-579 77-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 8.1E-44 1.7E-48 385.1 25.6 219 218-580 182-411 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2E-43 4.3E-48 371.3 25.3 257 148-579 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 3.4E-43 7.3E-48 370.9 24.7 261 142-577 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 9.1E-43 2E-47 364.2 24.5 230 143-580 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 6E-43 1.3E-47 372.5 20.8 265 152-579 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 2E-42 4.2E-47 362.8 24.3 240 140-581 18-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 2E-42 4.4E-47 361.5 24.1 253 150-579 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 1E-41 2.2E-46 361.9 24.3 209 215-577 65-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1.4E-41 3.1E-46 360.6 23.8 250 139-582 9-286 (298)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.6E-41 3.5E-46 352.1 21.9 240 151-577 1-242 (242)
26 cd07473 Peptidases_S8_Subtilis 100.0 5.6E-41 1.2E-45 351.7 25.0 249 149-579 2-259 (259)
27 cd04842 Peptidases_S8_Kp43_pro 100.0 5.4E-41 1.2E-45 358.3 23.6 273 148-579 6-293 (293)
28 cd07477 Peptidases_S8_Subtilis 100.0 7.6E-41 1.7E-45 344.1 23.4 226 150-577 1-229 (229)
29 cd07480 Peptidases_S8_12 Pepti 100.0 6.1E-41 1.3E-45 357.8 23.4 261 148-609 7-296 (297)
30 cd04843 Peptidases_S8_11 Pepti 100.0 6.3E-41 1.4E-45 351.7 21.4 245 140-579 4-277 (277)
31 cd07491 Peptidases_S8_7 Peptid 100.0 1.6E-40 3.4E-45 343.1 19.8 216 148-561 2-229 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 9.4E-41 2E-45 354.5 15.3 277 152-613 1-282 (282)
33 cd07492 Peptidases_S8_8 Peptid 100.0 2.6E-39 5.7E-44 330.9 23.3 221 150-579 1-222 (222)
34 cd07482 Peptidases_S8_Lantibio 100.0 2.2E-39 4.8E-44 346.1 22.5 255 150-577 1-294 (294)
35 cd04059 Peptidases_S8_Protein_ 100.0 2.3E-39 4.9E-44 346.5 20.1 250 138-579 26-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 6.5E-38 1.4E-42 329.7 22.5 243 148-579 2-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.3E-38 2.9E-43 338.0 17.1 367 29-620 47-472 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 4E-33 8.7E-38 308.8 20.1 359 220-758 309-687 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2.4E-33 5.2E-38 288.6 15.5 195 217-577 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 3.1E-31 6.7E-36 273.4 23.1 234 151-577 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 2.8E-23 6.1E-28 237.7 23.4 271 140-613 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 7.2E-23 1.6E-27 207.7 12.3 421 8-633 8-474 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.8E-17 1E-21 177.8 14.9 103 247-352 81-198 (361)
44 PF05922 Inhibitor_I9: Peptida 98.9 3.4E-09 7.3E-14 90.1 7.0 78 33-120 1-82 (82)
45 PF06280 DUF1034: Fn3-like dom 98.6 4.6E-07 9.9E-12 82.0 13.0 87 666-756 1-112 (112)
46 KOG3525 Subtilisin-like propro 98.6 1.2E-06 2.5E-11 97.2 16.4 75 540-614 251-325 (431)
47 cd02133 PA_C5a_like PA_C5a_lik 98.4 1.3E-06 2.8E-11 82.7 9.5 102 379-498 25-142 (143)
48 COG4934 Predicted protease [Po 98.4 3E-06 6.5E-11 100.9 13.3 98 247-347 286-395 (1174)
49 cd02120 PA_subtilisin_like PA_ 98.2 7.8E-06 1.7E-10 75.6 10.6 108 358-472 2-125 (126)
50 cd04816 PA_SaNapH_like PA_SaNa 97.3 0.00068 1.5E-08 62.3 7.1 72 400-471 29-120 (122)
51 cd02122 PA_GRAIL_like PA _GRAI 97.0 0.0024 5.3E-08 59.7 8.2 75 398-472 42-137 (138)
52 PF02225 PA: PA domain; Inter 97.0 0.0011 2.4E-08 58.4 4.9 65 399-463 18-101 (101)
53 cd02130 PA_ScAPY_like PA_ScAPY 96.8 0.0037 8E-08 57.3 7.2 71 401-472 32-121 (122)
54 cd02129 PA_hSPPL_like PA_hSPPL 96.8 0.0049 1.1E-07 55.9 7.6 67 399-465 29-114 (120)
55 cd02127 PA_hPAP21_like PA_hPAP 96.8 0.0055 1.2E-07 55.7 8.0 73 400-473 21-116 (118)
56 cd04818 PA_subtilisin_1 PA_sub 96.8 0.0044 9.5E-08 56.5 7.4 73 399-472 26-117 (118)
57 cd02124 PA_PoS1_like PA_PoS1_l 96.6 0.016 3.5E-07 53.6 10.1 72 398-471 39-127 (129)
58 cd00538 PA PA: Protease-associ 96.6 0.006 1.3E-07 56.0 7.2 73 399-471 29-124 (126)
59 cd02126 PA_EDEM3_like PA_EDEM3 96.6 0.0068 1.5E-07 55.9 7.1 71 400-471 27-124 (126)
60 PF14874 PapD-like: Flagellar- 96.5 0.051 1.1E-06 47.9 12.1 81 677-759 21-101 (102)
61 cd02132 PA_GO-like PA_GO-like: 96.3 0.011 2.4E-07 55.5 7.3 69 400-471 48-137 (139)
62 cd02125 PA_VSR PA_VSR: Proteas 96.2 0.018 3.9E-07 53.1 7.5 56 417-472 58-126 (127)
63 cd04819 PA_2 PA_2: Protease-as 95.9 0.046 9.9E-07 50.5 9.0 52 417-468 62-122 (127)
64 cd04813 PA_1 PA_1: Protease-as 95.7 0.03 6.5E-07 50.8 6.6 65 399-465 26-111 (117)
65 cd02123 PA_C_RZF_like PA_C-RZF 95.7 0.034 7.3E-07 53.1 7.2 69 400-468 50-142 (153)
66 cd04817 PA_VapT_like PA_VapT_l 95.5 0.04 8.6E-07 51.5 6.8 49 417-465 77-133 (139)
67 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.1 2.2E-06 43.6 7.7 54 677-730 6-60 (78)
68 PF11614 FixG_C: IG-like fold 89.7 7.5 0.00016 35.1 12.4 53 677-730 32-84 (118)
69 PF06030 DUF916: Bacterial pro 88.3 7.8 0.00017 35.4 11.3 68 677-746 28-120 (121)
70 COG1470 Predicted membrane pro 85.7 5.9 0.00013 43.8 10.3 69 677-746 398-469 (513)
71 cd04815 PA_M28_2 PA_M28_2: Pro 78.5 6 0.00013 36.8 6.4 55 417-471 68-132 (134)
72 cd02128 PA_TfR PA_TfR: Proteas 78.0 3.9 8.5E-05 40.0 5.2 49 417-465 71-155 (183)
73 PF00345 PapD_N: Pili and flag 75.2 29 0.00063 31.4 10.0 67 677-745 15-89 (122)
74 PF07718 Coatamer_beta_C: Coat 75.0 37 0.00079 31.7 10.3 68 677-745 70-138 (140)
75 COG1470 Predicted membrane pro 73.9 44 0.00096 37.3 12.2 70 677-747 285-361 (513)
76 KOG1114 Tripeptidyl peptidase 72.3 2.9 6.2E-05 49.7 3.0 21 148-168 80-100 (1304)
77 PF00635 Motile_Sperm: MSP (Ma 69.9 22 0.00048 31.2 7.7 51 677-730 19-69 (109)
78 KOG2442 Uncharacterized conser 64.5 17 0.00036 40.5 6.6 60 417-476 111-178 (541)
79 TIGR02745 ccoG_rdxA_fixG cytoc 64.4 35 0.00075 38.4 9.4 53 677-730 347-399 (434)
80 PF07705 CARDB: CARDB; InterP 54.8 1E+02 0.0022 26.1 9.0 52 677-731 20-72 (101)
81 cd04814 PA_M28_1 PA_M28_1: Pro 52.2 27 0.00058 32.8 5.0 21 417-437 81-101 (142)
82 PRK15098 beta-D-glucoside gluc 50.0 33 0.00071 41.8 6.7 51 677-730 668-727 (765)
83 cd02121 PA_GCPII_like PA_GCPII 48.3 22 0.00047 36.1 4.0 22 417-438 87-108 (220)
84 cd04820 PA_M28_1_1 PA_M28_1_1: 48.3 18 0.00039 33.7 3.2 21 417-437 77-97 (137)
85 smart00635 BID_2 Bacterial Ig- 43.6 61 0.0013 27.0 5.5 40 705-748 4-43 (81)
86 cd02131 PA_hNAALADL2_like PA_h 43.0 17 0.00037 34.4 2.1 22 417-438 56-77 (153)
87 cd04822 PA_M28_1_3 PA_M28_1_3: 42.4 27 0.00059 33.2 3.5 22 417-438 81-102 (151)
88 PF12690 BsuPI: Intracellular 41.8 1.3E+02 0.0028 25.3 7.1 52 678-730 2-70 (82)
89 PLN03080 Probable beta-xylosid 41.7 65 0.0014 39.3 7.4 51 677-730 685-744 (779)
90 PF05753 TRAP_beta: Translocon 38.5 2.6E+02 0.0057 27.4 9.8 63 676-740 38-106 (181)
91 KOG4628 Predicted E3 ubiquitin 37.9 48 0.001 35.9 4.8 49 417-465 95-149 (348)
92 PF07610 DUF1573: Protein of u 37.0 1.2E+02 0.0026 22.2 5.4 44 682-728 2-45 (45)
93 TIGR01451 B_ant_repeat conserv 36.0 1.6E+02 0.0034 22.4 6.2 37 677-715 13-50 (53)
94 COG4856 Uncharacterized protei 35.7 1.4E+02 0.0031 32.5 7.8 54 677-730 91-146 (403)
95 smart00237 Calx_beta Domains i 34.3 2.5E+02 0.0053 23.8 7.9 62 664-730 9-75 (90)
96 PF02845 CUE: CUE domain; Int 31.9 48 0.001 23.8 2.6 24 555-578 5-28 (42)
97 PF01345 DUF11: Domain of unkn 31.3 1.1E+02 0.0024 24.9 5.1 30 677-706 42-72 (76)
98 PF00553 CBM_2: Cellulose bind 29.6 3.8E+02 0.0082 23.3 8.8 31 677-707 14-45 (101)
99 PF00927 Transglut_C: Transglu 29.4 3.8E+02 0.0083 23.3 8.7 52 677-730 16-76 (107)
100 PRK13203 ureB urease subunit b 27.9 1.4E+02 0.003 26.2 5.0 17 677-693 19-35 (102)
101 PRK13202 ureB urease subunit b 27.4 1.5E+02 0.0033 26.0 5.2 16 678-693 21-36 (104)
102 cd00407 Urease_beta Urease bet 27.2 1.6E+02 0.0034 25.8 5.3 17 677-693 19-35 (101)
103 PRK15019 CsdA-binding activato 26.8 60 0.0013 30.7 3.0 34 538-572 76-109 (147)
104 TIGR00192 urease_beta urease, 25.6 1.6E+02 0.0035 25.7 5.1 17 677-693 19-35 (101)
105 TIGR03391 FeS_syn_CsdE cystein 25.5 67 0.0014 30.1 3.0 35 538-573 71-105 (138)
106 TIGR00845 caca sodium/calcium 24.3 5.7E+02 0.012 31.8 11.2 63 662-730 405-474 (928)
107 PF04255 DUF433: Protein of un 24.2 65 0.0014 24.8 2.3 39 537-575 10-54 (56)
108 PF08260 Kinin: Insect kinin p 24.1 35 0.00075 15.6 0.4 6 490-495 3-8 (8)
109 PF00699 Urease_beta: Urease b 23.4 1.7E+02 0.0037 25.5 4.8 17 677-693 18-34 (100)
110 PF05506 DUF756: Domain of unk 23.4 4.5E+02 0.0098 22.1 9.5 55 677-739 19-73 (89)
111 PRK09296 cysteine desufuration 22.7 80 0.0017 29.5 3.0 34 538-572 66-99 (138)
112 PF13940 Ldr_toxin: Toxin Ldr, 22.7 62 0.0013 22.1 1.6 13 546-558 14-26 (35)
113 PF03160 Calx-beta: Calx-beta 21.9 3.3E+02 0.0072 23.2 6.7 66 661-730 15-85 (100)
114 PF04744 Monooxygenase_B: Mono 21.9 1.1E+03 0.023 25.9 12.1 55 674-730 261-335 (381)
115 PF02601 Exonuc_VII_L: Exonucl 21.1 2.7E+02 0.0058 29.9 7.2 75 253-329 39-118 (319)
116 PF02657 SufE: Fe-S metabolism 20.8 97 0.0021 28.4 3.1 34 539-573 58-91 (125)
117 COG2166 sufE Cysteine desulfur 20.4 89 0.0019 29.3 2.7 33 538-571 71-103 (144)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-51 Score=438.31 Aligned_cols=298 Identities=54% Similarity=0.772 Sum_probs=254.1
Q ss_pred cccccCCCccccccccCCCcccccccccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccC
Q 036830 117 LQLHTTRSWDFLAAAAKPAKNTWFNHKYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHC 194 (760)
Q Consensus 117 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~ 194 (760)
++++++++++++++.... ...+|..+ |+||+|||||||||++||+|.+.+..+++..|.+.|..+..+....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW-----GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSC 75 (307)
T ss_pred CCccccCCHHHcCCCCCC-----CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCc
Confidence 467889999999987522 23356666 99999999999999999999998888999999999999988887889
Q ss_pred ccceecccccCCCCCCC------CCCCCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC
Q 036830 195 NRKLIGARHCSRASTNK------DNSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG 268 (760)
Q Consensus 195 n~ki~g~~~~~~~~~~~------~~~~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g 268 (760)
|+|+++.++|.+++... .+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+
T Consensus 76 ~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~ 155 (307)
T cd04852 76 NNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDG 155 (307)
T ss_pred CCeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCC
Confidence 99999999998764321 234667889999999999999998776666666677889999999999999998844
Q ss_pred -CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCCCCceEEecc
Q 036830 269 -CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAA 347 (760)
Q Consensus 269 -~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA 347 (760)
+..+++++||++|++++++|||||||... .....+.+..++..+.++|++||+||||+|+...+.++..||+++||+
T Consensus 156 ~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~--~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 156 GCFGSDILAAIDQAIADGVDVISYSIGGGS--PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 88999999999999999999999999984 245667888888899999999999999999888888888999999997
Q ss_pred ccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCce
Q 036830 348 STIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQ 427 (760)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~ 427 (760)
++
T Consensus 234 ~~------------------------------------------------------------------------------ 235 (307)
T cd04852 234 ST------------------------------------------------------------------------------ 235 (307)
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred EEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCc
Q 036830 428 GLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPD 507 (760)
Q Consensus 428 ~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 507 (760)
+|||
T Consensus 236 ----------------------------------------------------------------------------~~~d 239 (307)
T cd04852 236 ----------------------------------------------------------------------------LKPD 239 (307)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 4679
Q ss_pred eeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 508 VAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 508 I~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
|+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|+|||++|++||+
T Consensus 240 i~apG~~i~~~~~~~~~----~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 240 IAAPGVDILAAWTPEGA----DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeeccCceeecccCccc----cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999864211 112223378999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.7e-50 Score=448.07 Aligned_cols=302 Identities=18% Similarity=0.168 Sum_probs=215.9
Q ss_pred cccccccC----CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCcccc---ccccCCCCCcccCccceecccccCCCCCCCC
Q 036830 140 FNHKYHKA----ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKG---VCMESPDFKKSHCNRKLIGARHCSRASTNKD 212 (760)
Q Consensus 140 ~~~~~~~~----G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g---~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~ 212 (760)
++++|+.. |+||+|||||||||++||||.+.-... +....| ....+..+ ... ..+++|.++
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiDdD~nG~-----vdd-~~G~nfVd~----- 370 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGIDDDNNGN-----VDD-EYGANFVNN----- 370 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCccccccccCCc-----ccc-cccccccCC-----
Confidence 55666532 999999999999999999998521000 000001 00000000 011 122344332
Q ss_pred CCCCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEe
Q 036830 213 NSGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISI 291 (760)
Q Consensus 213 ~~~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 291 (760)
...+.|.+||||||||||||...++ ..+.||||+|+|+.+|++++.+ +..+++++||+||++.|++||||
T Consensus 371 -~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 -DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred -CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 2456889999999999999986432 2347999999999999998777 88899999999999999999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------ccC----CCCceEEecccccccc
Q 036830 292 SIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFT--------------VAN----TAPWLFTVAASTIDRD 353 (760)
Q Consensus 292 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitVgA~~~~~~ 353 (760)
|||+.. ....+..++.+|.++|++||+||||+|..... ++. ..|++|+|||++.+.
T Consensus 442 SlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~- 515 (639)
T PTZ00262 442 SFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK- 515 (639)
T ss_pred ccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC-
Confidence 999873 34567788899999999999999999854321 121 235677777653221
Q ss_pred ceeeEEeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEc
Q 036830 354 FQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFIN 433 (760)
Q Consensus 354 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~ 433 (760)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCc
Q 036830 434 DDEKIWPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGV 513 (760)
Q Consensus 434 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 513 (760)
.....++.||++|.. ++||+|||+
T Consensus 516 -------------------------------------------------~~~~s~s~~Snyg~~-------~VDIaAPG~ 539 (639)
T PTZ00262 516 -------------------------------------------------NNQYSLSPNSFYSAK-------YCQLAAPGT 539 (639)
T ss_pred -------------------------------------------------CCcccccccccCCCC-------cceEEeCCC
Confidence 000123456666532 349999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCC
Q 036830 514 AVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSG 593 (760)
Q Consensus 514 ~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~ 593 (760)
+|+|+++. +.|..++|||||||||||+||||++++|+|+++||+++|++||.++..
T Consensus 540 dI~St~p~--------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~---------- 595 (639)
T PTZ00262 540 NIYSTFPK--------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPS---------- 595 (639)
T ss_pred CeeeccCC--------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC----------
Confidence 99999876 789999999999999999999999999999999999999999986521
Q ss_pred CCCCCCCCCC-cccCccccCCCceeeecChhhHHhhhhhcCC
Q 036830 594 NNANPHEMGA-GEINPLKALNPGLVFKTTIKDYLRFLCYYGY 634 (760)
Q Consensus 594 ~~~~~~~~G~-G~vn~~~Al~~~l~~~~~~~~~~~~~~~~g~ 634 (760)
.+..+|| |+||+++||+.++.+.. .++.++-+++|
T Consensus 596 ---~~n~~~wgG~LDa~kAV~~Ai~~~~---~~~~~~~~~~~ 631 (639)
T PTZ00262 596 ---LKNKVKWGGYLDIHHAVNLAIASKH---GRTEIAKSQSW 631 (639)
T ss_pred ---CCCccccCcEEcHHHHHHHHHhccc---cchhhcCchhH
Confidence 2222343 89999999997775543 33333344443
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2e-48 Score=407.86 Aligned_cols=268 Identities=25% Similarity=0.208 Sum_probs=202.6
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|+|||||||.+||++.+-....++..+ .+... .....|..+|||||
T Consensus 4 G~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~------~~~~~d~~gHGT~v 54 (275)
T cd05562 4 GTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD------LDGGSGGGDEGRAM 54 (275)
T ss_pred CCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc------cCCCCCCCchHHHH
Confidence 99999999999999999865432111111111 01100 13345788999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHH
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPI 307 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~ 307 (760)
||||+ ||||+|+|+.+|+. ...+++++||+|+++.|++|||||||... ...+.+..+
T Consensus 55 Agii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-~~~~~~~~~ 111 (275)
T cd05562 55 LEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN-EPFFQDGPI 111 (275)
T ss_pred HHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC-CCcccCCHH
Confidence 99995 89999999999875 45789999999999999999999999874 222334567
Q ss_pred HHHHHHHHhC-CcEEEEecCCCCCCCC-CccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeE
Q 036830 308 AIGALHAQQR-GVVVICSAGNDGPYPF-TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLA 385 (760)
Q Consensus 308 ~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~ 385 (760)
..+++++.++ |++||+||||+|.... ..++..|++|+|||++...........+.
T Consensus 112 ~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~----------------------- 168 (275)
T cd05562 112 AQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP----------------------- 168 (275)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc-----------------------
Confidence 7888888887 9999999999997543 44677899999999865421100000000
Q ss_pred ecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhc
Q 036830 386 YGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINS 465 (760)
Q Consensus 386 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 465 (760)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCc-eEEeeecCCCCCCCCCCCCCCCCcceeeecc
Q 036830 466 NKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGV-AVLAAIVPRPDRPGGIPAGEKPATYALRSGT 544 (760)
Q Consensus 466 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGT 544 (760)
.......+.|+++||+. ++++||||+|||. ++.+.+.. +.|..++||
T Consensus 169 ----------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~--------------~~~~~~sGT 216 (275)
T cd05562 169 ----------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG--------------DGPPNFFGT 216 (275)
T ss_pred ----------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC--------------Cceeecccc
Confidence 00012345678889987 7889999999975 44554433 679999999
Q ss_pred cchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCccccCC
Q 036830 545 SMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPLKALN 613 (760)
Q Consensus 545 SmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~~Al~ 613 (760)
|||||||||++|||+|++|+|++++||++|++||+++. .+.++..||||+||+.+||+
T Consensus 217 S~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~-----------~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 217 SAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG-----------EPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC-----------CCCCCCCcCcCcccHHHHhh
Confidence 99999999999999999999999999999999999763 23467789999999999986
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-48 Score=412.64 Aligned_cols=288 Identities=28% Similarity=0.264 Sum_probs=192.5
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|||||||||++||+|.+... ..|+. .|+ +...+..+.++..+ ....+.|.+||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~------~~d---~~~~~~~g~d~~~~-----~~~~~~D~~gHGThv 62 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKL------KFD---YKAYLLPGMDKWGG-----FYVIMYDFFSHGTSC 62 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCccc------ccC---cCCCccCCcCCCCC-----ccCCCCCccccchhH
Confidence 8999999999999999999964211 00100 000 00112222222211 113467899999999
Q ss_pred hhhcccccccccccccc-cCCcccccCCCCeEEEEEeccCCC-CCHHHHHH-------HHHHHH--hCCCcEEEecccCC
Q 036830 228 ASTAAGNYVSNAIYFGL-AGGTARGGSPFSRIASYKACKEGG-CSGAAILQ-------AIDDAI--HDGVDIISISIGLS 296 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~-~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVIN~SlG~~ 296 (760)
||||||....+.+.+|+ ....+.||||+|+|+.+|++...+ +....+.. +++|.+ +++++|||||||..
T Consensus 63 AGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 63 ASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred HHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 99999986543222221 123568999999999999997543 33333333 344443 68999999999986
Q ss_pred CCCC---CCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--ccCCCCceEEeccccccccceeeEEeCCCeeEeeee
Q 036830 297 NSEA---DYMNDPIAIGALHA-QQRGVVVICSAGNDGPYPFT--VANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTA 370 (760)
Q Consensus 297 ~~~~---~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 370 (760)
.... ....+..+..++.+ .++|+++|+||||+|+...+ .++.++++|+|||++.......
T Consensus 143 ~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-------------- 208 (311)
T cd07497 143 NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-------------- 208 (311)
T ss_pred CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch--------------
Confidence 3110 01122333333332 48999999999999976443 4567799999999864310000
Q ss_pred eecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEE
Q 036830 371 ISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAE 450 (760)
Q Consensus 371 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~ 450 (760)
+...+
T Consensus 209 -----------~~~~~---------------------------------------------------------------- 213 (311)
T cd07497 209 -----------YLFGY---------------------------------------------------------------- 213 (311)
T ss_pred -----------hhhcc----------------------------------------------------------------
Confidence 00000
Q ss_pred echhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCC
Q 036830 451 VGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIP 530 (760)
Q Consensus 451 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~ 530 (760)
.....+.++.||||||+. ++++||||+|||++|+++.+..... .
T Consensus 214 ------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~----~ 257 (311)
T cd07497 214 ------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG----G 257 (311)
T ss_pred ------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC----c
Confidence 011236689999999998 8999999999999999987643210 0
Q ss_pred CCCCCCcceeeecccchhhhHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 036830 531 AGEKPATYALRSGTSMACPHVTGAAAFIKSVRR------KWTYSMIKSALMTTA 578 (760)
Q Consensus 531 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~ls~~~ik~~L~~TA 578 (760)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 ~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 111225799999999999999999999999886 689999999999997
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4.9e-48 Score=402.08 Aligned_cols=240 Identities=26% Similarity=0.355 Sum_probs=196.9
Q ss_pred cccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCC
Q 036830 144 YHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPL 221 (760)
Q Consensus 144 ~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~ 221 (760)
|+++ |+||+|||||||||.+||+|.+.. ...+|... ....|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~-------~~~~d~~ 45 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTNE-------KTLDDGL 45 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCCC-------CCCCCCC
Confidence 6777 999999999999999999997310 00111111 3345778
Q ss_pred CccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCC
Q 036830 222 GHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEA 300 (760)
Q Consensus 222 gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 300 (760)
||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...+.++++++|+++.+++|||||||...
T Consensus 46 gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--- 111 (255)
T cd07479 46 GHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--- 111 (255)
T ss_pred CcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---
Confidence 999999999998752 237999999999999998776 67788999999999999999999999863
Q ss_pred CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--ccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCC
Q 036830 301 DYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFT--VANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSR 378 (760)
Q Consensus 301 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 378 (760)
+.+.++..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 112 -~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 163 (255)
T cd07479 112 -FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD--------------------------- 163 (255)
T ss_pred -CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC---------------------------
Confidence 344566667788899999999999999976444 35566899999985421
Q ss_pred CceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHH
Q 036830 379 SKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFR 458 (760)
Q Consensus 379 ~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 458 (760)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCC----CCCcccCceeeCCceEEeeecCCCCCCCCCCCCCC
Q 036830 459 IINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLP----TENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEK 534 (760)
Q Consensus 459 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~ 534 (760)
+.++.|||+|++.. ..+++||||.|||.+|+++...
T Consensus 164 ---------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------------- 203 (255)
T cd07479 164 ---------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------------- 203 (255)
T ss_pred ---------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-------------
Confidence 45789999996532 2678899999999999988654
Q ss_pred CCcceeeecccchhhhHHHHHHHHHHhCC----CCCHHHHHHHHHhccccc
Q 036830 535 PATYALRSGTSMACPHVTGAAAFIKSVRR----KWTYSMIKSALMTTATVY 581 (760)
Q Consensus 535 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~ls~~~ik~~L~~TA~~~ 581 (760)
+.|..++|||||||||||++|||+|++| .++|++||++|++||+++
T Consensus 204 -~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 204 -GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred -CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 6788999999999999999999999998 799999999999999975
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=8.9e-48 Score=429.13 Aligned_cols=393 Identities=24% Similarity=0.296 Sum_probs=253.6
Q ss_pred CCCeEEEEEeCCCCCCCCCCCC-CCCCCCCCccccccccCCCCCcccCccceecccccCC----C---CCCCCCCCCCCC
Q 036830 148 ASDIVIGVIDTGIWPESPSFND-QGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSR----A---STNKDNSGSSRD 219 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~----~---~~~~~~~~~~~d 219 (760)
|+||+|||||||||+.||+|.+ ++.+++...|++....+... ....+...+.. . .....+.....|
T Consensus 3 G~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 9999999999999999999986 57889999999887654321 11111111111 0 000012245678
Q ss_pred CCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-----------CCHHHHHHHHHHHHhC----
Q 036830 220 PLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-----------CSGAAILQAIDDAIHD---- 284 (760)
Q Consensus 220 ~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~---- 284 (760)
..||||||||||||+..+ +..+.||||+|+|+.+|++...+ +...++++||+|+++.
T Consensus 77 ~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~ 148 (455)
T cd07478 77 ENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALEL 148 (455)
T ss_pred CCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999998753 23458999999999999998764 5688999999999874
Q ss_pred -CCcEEEecccCCCCCCCCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCCCccCCC-C----c--eEEeccccccccce
Q 036830 285 -GVDIISISIGLSNSEADYMNDPIAIGALHAQQR-GVVVICSAGNDGPYPFTVANTA-P----W--LFTVAASTIDRDFQ 355 (760)
Q Consensus 285 -g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~-p----~--vitVgA~~~~~~~~ 355 (760)
.+.|||||||... +.....+.++.++..+..+ |++||+||||+|....+..... + . -+.|+... ..+.
T Consensus 149 ~~p~VInlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~~ 225 (455)
T cd07478 149 NKPLVINISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGFN 225 (455)
T ss_pred CCCeEEEEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cceE
Confidence 3679999999875 4455667888888887766 9999999999997655543211 0 0 12222211 1111
Q ss_pred eeEEeCCCeeEeeeeeecccCCCCce------------eeeEecccccccccccccccccccCCCCCccccch-----hh
Q 036830 356 STVLLGNGKAIKGTAISLSNLSRSKT------------YPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGR-----KI 418 (760)
Q Consensus 356 ~~~~~~~~~~~~g~~~~~~~~~~~~~------------~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gk-----k~ 418 (760)
-+++..... ..++...+|.++.. +...+... ..|... ..+....|. ..
T Consensus 226 ~eiW~~~~d---~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t-----------~i~v~y-~~~~~~~g~~~i~i~~ 290 (455)
T cd07478 226 LEIWGDFPD---RFSVSIISPSGESSGRINPGIGGSESYKFVFEGT-----------TVYVYY-YLPEPYTGDQLIFIRF 290 (455)
T ss_pred EEEecCCCC---EEEEEEECCCCCccCccCcCCCcceeEEEEECCe-----------EEEEEE-cCCCCCCCCeEEEEEc
Confidence 111111100 01111111111100 00000000 000000 001112222 11
Q ss_pred hhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCc----eecc-CCCCCceecccC
Q 036830 419 AVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTV----TIPR-HRPAPVVAYFSS 493 (760)
Q Consensus 419 ~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~----~~~~-~~~~~~~a~fSs 493 (760)
.....|.|.+.++........++ .|+|.-.+...+. .++......++++.... ++.. +...+.++.|||
T Consensus 291 -~~~~~GiW~i~~~~~~~~~g~~~-~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss 364 (455)
T cd07478 291 -KNIKPGIWKIRLTGVSITDGRFD-AWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSG 364 (455)
T ss_pred -cCCCccceEEEEEeccCCCceEE-EEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccC
Confidence 23455888888887655444344 5666554443322 23444444444444332 1111 223456999999
Q ss_pred CCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhC------CCCCH
Q 036830 494 RGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVR------RKWTY 567 (760)
Q Consensus 494 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~ls~ 567 (760)
|||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++ |.|++
T Consensus 365 ~G~~~--~~~~kpdi~APG~~i~s~~~~--------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~ 428 (455)
T cd07478 365 RGPTR--DGRIKPDIAAPGVNILTASPG--------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYG 428 (455)
T ss_pred CCcCC--CCCcCceEEecCCCEEEeecC--------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCH
Confidence 99998 899999999999999999886 789999999999999999999999975 56799
Q ss_pred HHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCc
Q 036830 568 SMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAG 604 (760)
Q Consensus 568 ~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G 604 (760)
++||++|++||+++. +..+++++||||
T Consensus 429 ~~ik~~L~~tA~~~~----------~~~~pn~~~GyG 455 (455)
T cd07478 429 EKIKTYLIRGARRRP----------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHHhCccCC----------CCCCCCCCCCCC
Confidence 999999999999763 245688999998
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.5e-47 Score=413.93 Aligned_cols=310 Identities=30% Similarity=0.384 Sum_probs=234.1
Q ss_pred ccccC---CCCeEEEEEeCCCCCCCCCCCCCCCCCCCC-----ccccccccCCCCCcccCccceecccccCCCCCCCCCC
Q 036830 143 KYHKA---ASDIVIGVIDTGIWPESPSFNDQGMGEIPS-----RWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNS 214 (760)
Q Consensus 143 ~~~~~---G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 214 (760)
+|+.+ |+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++.+++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCcc---
Confidence 56655 999999999999999999998654332111 111111111 1224567888888888664321
Q ss_pred CCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccC--CC-CCHHHHHHHHHHHHhCCCcEEEe
Q 036830 215 GSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKE--GG-CSGAAILQAIDDAIHDGVDIISI 291 (760)
Q Consensus 215 ~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~g~dVIN~ 291 (760)
....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|+++. .+ .....+++|++++++.|++||||
T Consensus 76 ~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 150 (346)
T cd07475 76 LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINM 150 (346)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2245789999999999999875421 1345689999999999999973 33 78889999999999999999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------cCCCCceEEeccccccccce
Q 036830 292 SIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTV----------------ANTAPWLFTVAASTIDRDFQ 355 (760)
Q Consensus 292 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVgA~~~~~~~~ 355 (760)
|||... ........+..++.++.++|++||+||||+|...... +...+++|+||+++..
T Consensus 151 S~G~~~-~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---- 225 (346)
T cd07475 151 SLGSTA-GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---- 225 (346)
T ss_pred CCCcCC-CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----
Confidence 999985 2224567778888999999999999999998544321 2234566777664310
Q ss_pred eeEEeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCC
Q 036830 356 STVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDD 435 (760)
Q Consensus 356 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~ 435 (760)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceE
Q 036830 436 EKIWPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAV 515 (760)
Q Consensus 436 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 515 (760)
......+.++.||+|||+. ..++||||+|||.+|
T Consensus 226 --------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i 259 (346)
T cd07475 226 --------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNI 259 (346)
T ss_pred --------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCe
Confidence 0012236688999999998 889999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHh----CCCCCHHH----HHHHHHhcccccCCCCCC
Q 036830 516 LAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSV----RRKWTYSM----IKSALMTTATVYDNTGTP 587 (760)
Q Consensus 516 ~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ls~~~----ik~~L~~TA~~~~~~g~p 587 (760)
+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+...
T Consensus 260 ~s~~~~--------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~---- 321 (346)
T cd07475 260 YSTVND--------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLD---- 321 (346)
T ss_pred EEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccc----
Confidence 999765 67899999999999999999999998 78999876 78899999984211
Q ss_pred cCCCCCCCCCCCCCCCcccCccccCC
Q 036830 588 LTNSSGNNANPHEMGAGEINPLKALN 613 (760)
Q Consensus 588 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 613 (760)
.......+.+..+|+|+||+.+||+
T Consensus 322 -~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 322 -SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -cCCCCccCCccccCcchhcHHHhhC
Confidence 1112456678889999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-46 Score=404.49 Aligned_cols=292 Identities=30% Similarity=0.371 Sum_probs=228.8
Q ss_pred cccccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCC----CCCCC
Q 036830 140 FNHKYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRAS----TNKDN 213 (760)
Q Consensus 140 ~~~~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~----~~~~~ 213 (760)
++.+|+.+ |+||+|||||+|||++||+|.+.-.. +.++.+.+++..+. ....+
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~ 60 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGTNPPVP 60 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccccCCCC
Confidence 45789988 99999999999999999999752110 01222223332111 00112
Q ss_pred CCCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEec
Q 036830 214 SGSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISIS 292 (760)
Q Consensus 214 ~~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S 292 (760)
...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ...+.++++++++++++++|||||
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 345667799999999999998743 2347999999999999998666 778889999999999999999999
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CccCCCCceEEeccccccccceeeEEeCCCeeEeee
Q 036830 293 IGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPF---TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGT 369 (760)
Q Consensus 293 lG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~ 369 (760)
||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 132 ~g~~~---~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 132 LGGPS---GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred CCcCC---CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99874 344577778888999999999999999986532 3345668888888632
Q ss_pred eeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceE
Q 036830 370 AISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYA 449 (760)
Q Consensus 370 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~ 449 (760)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCC
Q 036830 450 EVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGI 529 (760)
Q Consensus 450 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~ 529 (760)
+.||++||+. +...||||+|||++++++++...
T Consensus 189 ---------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~------ 221 (312)
T cd07489 189 ---------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG------ 221 (312)
T ss_pred ---------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC------
Confidence 4679999987 78899999999999999987632
Q ss_pred CCCCCCCcceeeecccchhhhHHHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCc
Q 036830 530 PAGEKPATYALRSGTSMACPHVTGAAAFIKSVR-RKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINP 608 (760)
Q Consensus 530 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~ 608 (760)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..-. .....+...+|||+||+
T Consensus 222 ------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~~~~~~~G~G~vn~ 293 (312)
T cd07489 222 ------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDLAPVAQQGAGLVNA 293 (312)
T ss_pred ------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCCCCHhhcCcceeeH
Confidence 469999999999999999999999999 999999999999999998743221100 01236778999999999
Q ss_pred cccCCCceeee
Q 036830 609 LKALNPGLVFK 619 (760)
Q Consensus 609 ~~Al~~~l~~~ 619 (760)
++|++..-..+
T Consensus 294 ~~a~~~~~~~~ 304 (312)
T cd07489 294 YKALYATTTLS 304 (312)
T ss_pred HHHhcCCcccc
Confidence 99999654443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=5.7e-46 Score=388.39 Aligned_cols=245 Identities=27% Similarity=0.345 Sum_probs=201.7
Q ss_pred ccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCC
Q 036830 143 KYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDP 220 (760)
Q Consensus 143 ~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~ 220 (760)
+|..+ |+||+|||||+|||++||+|.+....+.. .+.. ......|.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~------~~~~~~~~ 49 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA------AACQDGGA 49 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc------cCCCCCCC
Confidence 68887 89999999999999999999853221100 0000 01344567
Q ss_pred CCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC--CCHHHHHHHHHHHHhCCCcEEEecccCCCC
Q 036830 221 LGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG--CSGAAILQAIDDAIHDGVDIISISIGLSNS 298 (760)
Q Consensus 221 ~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 298 (760)
.+||||||||++|+.. ..+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||...
T Consensus 50 ~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~- 118 (267)
T cd07476 50 SAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLT- 118 (267)
T ss_pred CCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCC-
Confidence 8999999999998752 2357999999999999997654 45789999999999999999999999864
Q ss_pred CCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCC
Q 036830 299 EADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSR 378 (760)
Q Consensus 299 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 378 (760)
........+..+++.+.++|++||+||||+|.....+++..|++|+|||++..
T Consensus 119 ~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 171 (267)
T cd07476 119 QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD--------------------------- 171 (267)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC---------------------------
Confidence 22344567788889999999999999999998777788888999999985421
Q ss_pred CceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHH
Q 036830 379 SKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFR 458 (760)
Q Consensus 379 ~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 458 (760)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcc
Q 036830 459 IINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATY 538 (760)
Q Consensus 459 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y 538 (760)
+.++.||++|+.. .||||+|||.+|+++.+. +.|
T Consensus 172 ---------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~--------------~~~ 205 (267)
T cd07476 172 ---------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG--------------GEV 205 (267)
T ss_pred ---------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC--------------CCe
Confidence 3457899999864 378999999999999876 679
Q ss_pred eeeecccchhhhHHHHHHHHHHhCCC----CCHHHHHHHHHhcccccCC
Q 036830 539 ALRSGTSMACPHVTGAAAFIKSVRRK----WTYSMIKSALMTTATVYDN 583 (760)
Q Consensus 539 ~~~sGTSmAaP~VAG~aALl~q~~P~----ls~~~ik~~L~~TA~~~~~ 583 (760)
..++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 206 ~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 206 VRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 99999999999999999999999887 8999999999999998743
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-46 Score=381.55 Aligned_cols=234 Identities=29% Similarity=0.356 Sum_probs=193.5
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhh
Q 036830 151 IVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAST 230 (760)
Q Consensus 151 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 230 (760)
|+|||||||||++||+|.+... ..+++.. ....|..+||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~~--------~~~~~~~~HGT~vAgi 45 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFAG--------PGAPAPSAHGTAVASL 45 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCCC--------CCCCCCCCCHHHHHHH
Confidence 6899999999999999964211 1111110 1345678999999999
Q ss_pred cccccccccccccccCCcccccCCCCeEEEEEeccCCC----CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcH
Q 036830 231 AAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG----CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDP 306 (760)
Q Consensus 231 ~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~ 306 (760)
|+|...+. .||||+|+|+.+|++...+ ++..++++||+|+++.|++|||||||... ...
T Consensus 46 ia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~------~~~ 108 (239)
T cd05561 46 LAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP------NAL 108 (239)
T ss_pred HhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC------CHH
Confidence 99986321 5999999999999998642 67789999999999999999999999762 356
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCC-CCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeE
Q 036830 307 IAIGALHAQQRGVVVICSAGNDGPYP-FTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLA 385 (760)
Q Consensus 307 ~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~ 385 (760)
+..++.++.++|++||+||||+|... ..+++..+++|+|++++.+
T Consensus 109 l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~---------------------------------- 154 (239)
T cd05561 109 LAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR---------------------------------- 154 (239)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC----------------------------------
Confidence 77788899999999999999999753 3566777899999975422
Q ss_pred ecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhc
Q 036830 386 YGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINS 465 (760)
Q Consensus 386 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 465 (760)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeeccc
Q 036830 466 NKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTS 545 (760)
Q Consensus 466 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTS 545 (760)
+.++.||++|+.. ||.|||++|+++.+. +.|..++|||
T Consensus 155 --------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~--------------~~~~~~sGTS 192 (239)
T cd05561 155 --------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG--------------GGYRYVSGTS 192 (239)
T ss_pred --------------------CCccccCCCCCcc--------eEEccccceecccCC--------------CCEEEeCCHH
Confidence 4467899999976 999999999997655 6799999999
Q ss_pred chhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCc
Q 036830 546 MACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAG 604 (760)
Q Consensus 546 mAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G 604 (760)
||||||||++|||+|++| ++++|||++|++||+++. .+.++..||||
T Consensus 193 ~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g-----------~~~~d~~~G~G 239 (239)
T cd05561 193 FAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG-----------PPGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC-----------CCCcCCCcCCC
Confidence 999999999999999999 999999999999999763 34577889998
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-45 Score=389.94 Aligned_cols=282 Identities=39% Similarity=0.577 Sum_probs=217.1
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCC-C--------CCCCCC
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNK-D--------NSGSSR 218 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~-~--------~~~~~~ 218 (760)
|+||+|||||+|||++||+|.+... .+.++...++|....... . ......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF---------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC---------------------CCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 8999999999999999999974211 123333333333221110 0 112245
Q ss_pred CCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCC
Q 036830 219 DPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSN 297 (760)
Q Consensus 219 d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 297 (760)
|..+|||||||+|+|...+ ...+.||||+|+|+.+|++...+ +...++++||+|+++.+++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 6899999999999988643 23457999999999999998555 88899999999999999999999999874
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--cCCCCceEEeccccccccceeeEEeCCCeeEeeeeeeccc
Q 036830 298 SEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTV--ANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSN 375 (760)
Q Consensus 298 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 375 (760)
....+.+..+++++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 132 ---~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 132 ---NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred ---CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 22456778888999999999999999998765544 45678999999864210
Q ss_pred CCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhh
Q 036830 376 LSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVA 455 (760)
Q Consensus 376 ~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~ 455 (760)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCC-CCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCC
Q 036830 456 GFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSR-GPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEK 534 (760)
Q Consensus 456 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~ 534 (760)
.........|+++ |+.. ...+||||+|||.+|++++....
T Consensus 186 --------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~----------- 226 (295)
T cd07474 186 --------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG----------- 226 (295)
T ss_pred --------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-----------
Confidence 0011233445555 4544 78899999999999999987632
Q ss_pred CCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCcccc
Q 036830 535 PATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPLKA 611 (760)
Q Consensus 535 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~~A 611 (760)
..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 227 -~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~-------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 -TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD-------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC-------CCcCChhccCcceeccccC
Confidence 67899999999999999999999999999999999999999999764432 2233567899999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2e-45 Score=390.22 Aligned_cols=266 Identities=25% Similarity=0.324 Sum_probs=191.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCC---CCCCCcccccccc---------CCCCCcccCccceecccccCCCC--CCCCCC
Q 036830 149 SDIVIGVIDTGIWPESPSFNDQGM---GEIPSRWKGVCME---------SPDFKKSHCNRKLIGARHCSRAS--TNKDNS 214 (760)
Q Consensus 149 ~Gv~VgVIDtGid~~Hp~f~~~~~---~~~~~~~~g~~~~---------g~~f~~~~~n~ki~g~~~~~~~~--~~~~~~ 214 (760)
|+|+|||||||||++||+|++... ..++ .+|.... |.+|......+++.+...+.... ...++.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~--~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP--GNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV 78 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC--CCCccCCCCCccccccCeeccCCcccccccccCcccccccccccccc
Confidence 689999999999999999986311 1111 1111112 22232222222222222111110 001123
Q ss_pred CCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEeccc
Q 036830 215 GSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIG 294 (760)
Q Consensus 215 ~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG 294 (760)
..+.+..+|||||||||+|...++. .+.||||+|+|+.+|++........++++||+||++.|++|||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G 150 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFG 150 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 4455789999999999999864321 24799999999999998654477889999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cc--------CCCCceEEeccccccccceeeEEeCCC
Q 036830 295 LSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFT---VA--------NTAPWLFTVAASTIDRDFQSTVLLGNG 363 (760)
Q Consensus 295 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~~~~ 363 (760)
... ....+.+..+++.+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 151 ~~~---~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~----------- 216 (291)
T cd07483 151 KSF---SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY----------- 216 (291)
T ss_pred CCC---CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-----------
Confidence 763 1233456777788999999999999999854321 11 1235677777653220
Q ss_pred eeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCC
Q 036830 364 KAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTER 443 (760)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~ 443 (760)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCC
Q 036830 444 GILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRP 523 (760)
Q Consensus 444 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~ 523 (760)
....++.||++|+. +|||.|||.+|+++.+.
T Consensus 217 ----------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~-- 247 (291)
T cd07483 217 ----------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTPD-- 247 (291)
T ss_pred ----------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccCc--
Confidence 11346889999974 35999999999999765
Q ss_pred CCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 524 DRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 524 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 248 ------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 ------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999984
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.6e-44 Score=377.48 Aligned_cols=247 Identities=31% Similarity=0.382 Sum_probs=197.1
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|||||+||+++||+|.+. |.+.... .+...+.+.+.. .....+.|..+|||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~~---~~~~~~~d~~~HGT~v 58 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDPV---GNTPLPYDDNGHGTHT 58 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccCC---CCCCCCCCCCCchhhh
Confidence 89999999999999999999852 1111000 000001111110 1124556788999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHh------------CCCcEEEecccC
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIH------------DGVDIISISIGL 295 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVIN~SlG~ 295 (760)
||||+|.... +...||||+|+|+.+|++...++...+++++++++++ .+++|||||||.
T Consensus 59 agii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 59 MGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred hhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 9999987632 2237999999999999998877888899999999975 789999999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---ccCCCCceEEeccccccccceeeEEeCCCeeEeeeeee
Q 036830 296 SNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFT---VANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAIS 372 (760)
Q Consensus 296 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~ 372 (760)
.. .....+..++..+.++|++||+||||+|..... .+...|++|+||+++.+
T Consensus 130 ~~----~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------- 184 (264)
T cd07481 130 PS----GDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------------------- 184 (264)
T ss_pred CC----CCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------------------
Confidence 84 134556667788889999999999999865443 45677899999985432
Q ss_pred cccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEec
Q 036830 373 LSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVG 452 (760)
Q Consensus 373 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~ 452 (760)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCC
Q 036830 453 KVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAG 532 (760)
Q Consensus 453 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~ 532 (760)
+.++.||++||.. .+++||||+|||.+|+++++.
T Consensus 185 ---------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~----------- 218 (264)
T cd07481 185 ---------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG----------- 218 (264)
T ss_pred ---------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-----------
Confidence 4568999999987 789999999999999999876
Q ss_pred CCCCcceeeecccchhhhHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 036830 533 EKPATYALRSGTSMACPHVTGAAAFIKSVRRK--WTYSMIKSALMTTAT 579 (760)
Q Consensus 533 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--ls~~~ik~~L~~TA~ 579 (760)
+.|..++|||||||+|||++|||+|++|+ ++++|||.+|++||+
T Consensus 219 ---~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ---GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ---CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999 999999999999985
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-44 Score=377.71 Aligned_cols=245 Identities=28% Similarity=0.346 Sum_probs=197.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhh
Q 036830 150 DIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAS 229 (760)
Q Consensus 150 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAG 229 (760)
||+||||||||+++||+|..... ..+.++.+.++|.++.. ....|..+|||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~-----~~~~~~~~HGT~vag 55 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN-----NTNYTDDDHGTAVLS 55 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC-----CCCCCCCCchhhhhe
Confidence 79999999999999999942100 12345666666765421 113678899999999
Q ss_pred hcccccccccccccccCCcccccCCCCeEEEEEeccCCC---CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCC-----
Q 036830 230 TAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG---CSGAAILQAIDDAIHDGVDIISISIGLSNSEAD----- 301 (760)
Q Consensus 230 i~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~----- 301 (760)
||+|+.. +.+.||||+|+|+.+|+..... .....++.|++|+.+.+++|||||||.......
T Consensus 56 iia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~ 125 (261)
T cd07493 56 TMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYT 125 (261)
T ss_pred eeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccc
Confidence 9999752 3357999999999999876433 456678999999999999999999998741110
Q ss_pred -----CCCcHHHHHHHHHHhCCcEEEEecCCCCCC---CCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeec
Q 036830 302 -----YMNDPIAIGALHAQQRGVVVICSAGNDGPY---PFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISL 373 (760)
Q Consensus 302 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 373 (760)
.....+..+++.+.++|+++|+||||+|.. ....+...+++|+|||.+.+
T Consensus 126 ~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 183 (261)
T cd07493 126 YADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN---------------------- 183 (261)
T ss_pred cccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC----------------------
Confidence 112456778889999999999999999976 34566778999999985421
Q ss_pred ccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEech
Q 036830 374 SNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGK 453 (760)
Q Consensus 374 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~ 453 (760)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCC
Q 036830 454 VAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGE 533 (760)
Q Consensus 454 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~ 533 (760)
+.++.||++||+. ++++||||+|||.++++....
T Consensus 184 --------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------------ 217 (261)
T cd07493 184 --------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------------ 217 (261)
T ss_pred --------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC------------
Confidence 3567899999987 889999999999999986543
Q ss_pred CCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 534 KPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 534 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 --GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred --CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-45 Score=376.21 Aligned_cols=333 Identities=23% Similarity=0.357 Sum_probs=263.3
Q ss_pred CCCCCcEEEEeCCCCCcccccccCcchHHHHHHHHHHHHhhCCCccc------ccc------------ceEEEec---cc
Q 036830 28 NEIPKPYIVYMGSSSRSNLIIQNGEDVEIAKLNHMQLLSSIIPSEES------ERL------------SLIHHYK---HA 86 (760)
Q Consensus 28 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~------------~~~~~y~---~~ 86 (760)
...+.+|||.|+.... +...+.|.++++........ .-. .+.+.|. .+
T Consensus 77 ~~~~~~YiV~f~~~~~-----------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~ 145 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS-----------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRV 145 (501)
T ss_pred cccccceEEEeCCCcc-----------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccch
Confidence 3466899999994433 35677888887766532211 101 1334444 37
Q ss_pred eeeEEEEeCHHHHHHhcCCCCeEEEEeCccccccc-----CCCccccccccCCCc-----ccccccccccC-CCCeEEEE
Q 036830 87 FKGFSAILTDSEASALSGHDHVVSVFPDPVLQLHT-----TRSWDFLAAAAKPAK-----NTWFNHKYHKA-ASDIVIGV 155 (760)
Q Consensus 87 ~~g~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~-----~~~~~~~~~~~-G~Gv~VgV 155 (760)
|+|..-..+.+.+..+++.|-++.++++..++... .+....|++.+..+. ..|..++|+.. |+||...|
T Consensus 146 ~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv 225 (501)
T KOG1153|consen 146 FRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYV 225 (501)
T ss_pred hhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEE
Confidence 88888899999999999999999999998776543 222233455444332 25677888888 99999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhhccccc
Q 036830 156 IDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTAAGNY 235 (760)
Q Consensus 156 IDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~Ag~~ 235 (760)
+||||+.+||+|.+. ..| |..+. .-....|++||||||||+|++..
T Consensus 226 ~DTGVni~H~dFegR------a~w------Ga~i~----------------------~~~~~~D~nGHGTH~AG~I~sKt 271 (501)
T KOG1153|consen 226 LDTGVNIEHPDFEGR------AIW------GATIP----------------------PKDGDEDCNGHGTHVAGLIGSKT 271 (501)
T ss_pred ecccccccccccccc------eec------ccccC----------------------CCCcccccCCCcceeeeeeeccc
Confidence 999999999999863 233 21111 01345689999999999999986
Q ss_pred ccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhC---------CCcEEEecccCCCCCCCCCCc
Q 036830 236 VSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHD---------GVDIISISIGLSNSEADYMND 305 (760)
Q Consensus 236 ~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~ 305 (760)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+. ..-
T Consensus 272 --------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~------~S~ 331 (501)
T KOG1153|consen 272 --------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF------RSA 331 (501)
T ss_pred --------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc------ccH
Confidence 5999999999999999998 9999999999999975 468999999998 346
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCC-CccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeee
Q 036830 306 PIAIGALHAQQRGVVVICSAGNDGPYPF-TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPL 384 (760)
Q Consensus 306 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~ 384 (760)
++..|+++|.+.|+.+++||||+..+.+ +.++.+..+|||||++..
T Consensus 332 aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------------------- 378 (501)
T KOG1153|consen 332 ALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------------------- 378 (501)
T ss_pred HHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------------------
Confidence 6788889999999999999999998876 455788999999997642
Q ss_pred EecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHh
Q 036830 385 AYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYIN 464 (760)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 464 (760)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecc
Q 036830 465 SNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGT 544 (760)
Q Consensus 465 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGT 544 (760)
+.+|.||+||+|+ ||.|||.+|+|+|.+.. ......|||
T Consensus 379 ---------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~------------~at~ilSGT 417 (501)
T KOG1153|consen 379 ---------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN------------NATAILSGT 417 (501)
T ss_pred ---------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc------------cchheeecc
Confidence 6789999999999 99999999999998754 567899999
Q ss_pred cchhhhHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 036830 545 SMACPHVTGAAAFIKSVRRK---------WTYSMIKSALMTTAT 579 (760)
Q Consensus 545 SmAaP~VAG~aALl~q~~P~---------ls~~~ik~~L~~TA~ 579 (760)
|||+|||||++|..++.+|. .+|.++|..++.-..
T Consensus 418 SMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 418 SMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999999883 388888888877555
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.1e-44 Score=385.14 Aligned_cols=219 Identities=28% Similarity=0.324 Sum_probs=166.3
Q ss_pred CCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC---CCHHHHHHHHHHHHhCCCcEEEeccc
Q 036830 218 RDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG---CSGAAILQAIDDAIHDGVDIISISIG 294 (760)
Q Consensus 218 ~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG 294 (760)
.|+.+|||||||||||+..+ +..+.||||+|+|+++|+++... +....+++||+++++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998632 23457999999999999986532 23467999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHH-HHHhCCcEEEEecCCCCCCCCCccC---CCCceEEeccccccccceeeEEeCCCeeEeeee
Q 036830 295 LSNSEADYMNDPIAIGAL-HAQQRGVVVICSAGNDGPYPFTVAN---TAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTA 370 (760)
Q Consensus 295 ~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 370 (760)
... ... ....+..++. .+.++|+++|+||||+|+...++.. ..+++|+|||+........
T Consensus 254 ~~~-~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~-------------- 317 (412)
T cd04857 254 EAT-HWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA-------------- 317 (412)
T ss_pred cCC-CCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc--------------
Confidence 874 111 1123333443 3457999999999999987776543 4689999999643210000
Q ss_pred eecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEE
Q 036830 371 ISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAE 450 (760)
Q Consensus 371 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~ 450 (760)
.|..
T Consensus 318 --------------~y~~-------------------------------------------------------------- 321 (412)
T cd04857 318 --------------EYSL-------------------------------------------------------------- 321 (412)
T ss_pred --------------cccc--------------------------------------------------------------
Confidence 0000
Q ss_pred echhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCC
Q 036830 451 VGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIP 530 (760)
Q Consensus 451 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~ 530 (760)
.....+.++.||||||+. ++.+||||+|||++|.|.-...
T Consensus 322 ------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-------- 361 (412)
T cd04857 322 ------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-------- 361 (412)
T ss_pred ------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--------
Confidence 001135689999999998 9999999999999998752111
Q ss_pred CCCCCCcceeeecccchhhhHHHHHHHHHH----hCCCCCHHHHHHHHHhcccc
Q 036830 531 AGEKPATYALRSGTSMACPHVTGAAAFIKS----VRRKWTYSMIKSALMTTATV 580 (760)
Q Consensus 531 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~ 580 (760)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||++
T Consensus 362 ----~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 362 ----LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred ----CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 15789999999999999999999975 46899999999999999985
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-43 Score=371.33 Aligned_cols=257 Identities=31% Similarity=0.476 Sum_probs=205.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|+|||+||+++||+|.+.... .| .+.... .......|..+|||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~-----------------------~~~~~~---~~~~~~~d~~~HGT~v 50 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FA-----------------------DFVNTV---NGRTTPYDDNGHGTHV 50 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cc-----------------------cccccc---cCCCCCCCCCCchHHH
Confidence 89999999999999999999853211 00 000000 0124556778999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhC----CCcEEEecccCCCCCCCC
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHD----GVDIISISIGLSNSEADY 302 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~ 302 (760)
||||+|...+. .+.+.||||+|+|+.+|++++.+ ....++++||+|+++. +++|||||||... ....
T Consensus 51 Agiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~-~~~~ 122 (264)
T cd07487 51 AGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPP-DPSY 122 (264)
T ss_pred HHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCC-CCCC
Confidence 99999986431 23458999999999999998876 7888999999999998 9999999999885 2245
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCc
Q 036830 303 MNDPIAIGALHAQQRGVVVICSAGNDGPYPF--TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSK 380 (760)
Q Consensus 303 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 380 (760)
..+.+..+++++.++|++||+||||+|.... ..+...+++|+|||++.+..
T Consensus 123 ~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------- 175 (264)
T cd07487 123 GEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------- 175 (264)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------
Confidence 6678888899999999999999999997765 45667799999998754310
Q ss_pred eeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHH
Q 036830 381 TYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRII 460 (760)
Q Consensus 381 ~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 460 (760)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCccee
Q 036830 461 NYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYAL 540 (760)
Q Consensus 461 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~ 540 (760)
....++.||++||+. ++++||||+|||++|++..+.... ......+.|..
T Consensus 176 -----------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~-----~~~~~~~~~~~ 225 (264)
T cd07487 176 -----------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN-----PGAGVGSGYFE 225 (264)
T ss_pred -----------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccc-----cCCCCCCceEe
Confidence 013468899999998 899999999999999998653210 01112267899
Q ss_pred eecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 541 RSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 541 ~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 226 ~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 226 MSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.4e-43 Score=370.89 Aligned_cols=261 Identities=27% Similarity=0.310 Sum_probs=200.4
Q ss_pred cccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCC
Q 036830 142 HKYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRD 219 (760)
Q Consensus 142 ~~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d 219 (760)
++|..+ |+||+|+|||||||++||+|.+..... .+ ......+.+.... .+......|
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------~~~~~~~~~~~~~--~~~~~~~~~ 59 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------DPAVNGYNFVPNV--GDIDNDVSV 59 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------ccccCCccccccc--CCcCCCCCC
Confidence 378888 999999999999999999998641100 00 0000000010000 001234557
Q ss_pred CCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCC
Q 036830 220 PLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNS 298 (760)
Q Consensus 220 ~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 298 (760)
..+|||||||||+|...+....-|++ .+.|+||+|+|+.+|++...+ .....++++|+|+++.|++|||||||...
T Consensus 60 ~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~- 136 (273)
T cd07485 60 GGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG- 136 (273)
T ss_pred CCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-
Confidence 78999999999999865432222222 346799999999999998765 77889999999999999999999999873
Q ss_pred CCCCCCcHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeee
Q 036830 299 EADYMNDPIAIGALHAQQR-------GVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAI 371 (760)
Q Consensus 299 ~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 371 (760)
...+...+..++..+.++ |++||+||||+|......++..+++|+||+++.+
T Consensus 137 -~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~-------------------- 195 (273)
T cd07485 137 -GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN-------------------- 195 (273)
T ss_pred -ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC--------------------
Confidence 234556677777888888 9999999999998877778888999999986432
Q ss_pred ecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEe
Q 036830 372 SLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEV 451 (760)
Q Consensus 372 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i 451 (760)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCc-eEEeeecCCCCCCCCCC
Q 036830 452 GKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGV-AVLAAIVPRPDRPGGIP 530 (760)
Q Consensus 452 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~ 530 (760)
+.++.||++|+.. ||+|||. .|+++++....
T Consensus 196 ----------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~------ 227 (273)
T cd07485 196 ----------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG------ 227 (273)
T ss_pred ----------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC------
Confidence 4467899999977 9999999 89888765311
Q ss_pred CCCCCCcceeeecccchhhhHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 036830 531 AGEKPATYALRSGTSMACPHVTGAAAFIKSVRRK-WTYSMIKSALMTT 577 (760)
Q Consensus 531 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-ls~~~ik~~L~~T 577 (760)
.....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 228 --~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 --DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred --CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11267899999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=9.1e-43 Score=364.19 Aligned_cols=230 Identities=30% Similarity=0.385 Sum_probs=192.7
Q ss_pred ccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCC
Q 036830 143 KYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDP 220 (760)
Q Consensus 143 ~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~ 220 (760)
.|..+ |+||+|||||+||+++||+|.+. +...+.+... ....|.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~-------~~~~d~ 62 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG-------DPDSDC 62 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------CCCCCC
Confidence 55555 99999999999999999999741 1112222221 225678
Q ss_pred CCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhC-----CCcEEEeccc
Q 036830 221 LGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHD-----GVDIISISIG 294 (760)
Q Consensus 221 ~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~dVIN~SlG 294 (760)
.+|||||||||++.. .||||+|+|+.+|+++..+ ...+.++++++|+++. +++|||||||
T Consensus 63 ~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g 128 (255)
T cd04077 63 NGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG 128 (255)
T ss_pred CccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCC
Confidence 899999999999864 5999999999999998875 7788999999999987 4899999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeec
Q 036830 295 LSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYP-FTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISL 373 (760)
Q Consensus 295 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 373 (760)
... ...+..++.++.++|+++|+||||+|... ...++..|++|+||+++.+
T Consensus 129 ~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~---------------------- 180 (255)
T cd04077 129 GGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD---------------------- 180 (255)
T ss_pred CCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC----------------------
Confidence 872 45677778899999999999999999765 4556778999999986532
Q ss_pred ccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEech
Q 036830 374 SNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGK 453 (760)
Q Consensus 374 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~ 453 (760)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCC
Q 036830 454 VAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGE 533 (760)
Q Consensus 454 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~ 533 (760)
+..+.||++||.. ||+|||.+|.++.....
T Consensus 181 --------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~---------- 210 (255)
T cd04077 181 --------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGSD---------- 210 (255)
T ss_pred --------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCCC----------
Confidence 3367899999987 99999999999876422
Q ss_pred CCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 036830 534 KPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATV 580 (760)
Q Consensus 534 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~ 580 (760)
..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 211 --~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 --TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred --CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 689999999999999999999999999999999999999999973
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-43 Score=372.49 Aligned_cols=265 Identities=23% Similarity=0.202 Sum_probs=187.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhhc
Q 036830 152 VIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTA 231 (760)
Q Consensus 152 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 231 (760)
+|||||||||.+||+|...- .....+... .....|..||||||||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~------~~~~~d~~gHGT~vAgii 48 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE------PGWTADDLGHGTAVAGLA 48 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC------CCCcCCCCCChHHHHHHH
Confidence 79999999999999997410 111111110 011568899999999999
Q ss_pred ccccccccccccccCCcccccCCCCeEEEEEeccCCC-----CCHHHHHHHHHHHHhCC---CcEEEecccCCCCCCCCC
Q 036830 232 AGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-----CSGAAILQAIDDAIHDG---VDIISISIGLSNSEADYM 303 (760)
Q Consensus 232 Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~~~~~ 303 (760)
++.... .....|+||+|+|+.+|++.+.+ ....++++||+|+++.. ++|||||||.........
T Consensus 49 a~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~ 120 (291)
T cd04847 49 LYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGR 120 (291)
T ss_pred HcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCC
Confidence 976532 12347999999999999998763 56788999999999753 499999999985211111
Q ss_pred CcHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------ccCCCCceEEeccccccccceeeEEeCCCeeEeeee
Q 036830 304 NDPIAIGAL-HAQQRGVVVICSAGNDGPYPFT------------VANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTA 370 (760)
Q Consensus 304 ~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 370 (760)
...+..+++ .+.++|++||+||||+|..... .++.++++|+|||++.+.........
T Consensus 121 ~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~---------- 190 (291)
T cd04847 121 PSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY---------- 190 (291)
T ss_pred CCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc----------
Confidence 124444554 3568999999999999977543 24556899999998764211000000
Q ss_pred eecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEE
Q 036830 371 ISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAE 450 (760)
Q Consensus 371 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~ 450 (760)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCC----
Q 036830 451 VGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRP---- 526 (760)
Q Consensus 451 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~---- 526 (760)
+.......+.||++||.. ++.+||||+|||++|.+.........
T Consensus 191 ------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~ 238 (291)
T cd04847 191 ------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSL 238 (291)
T ss_pred ------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCccee
Confidence 000001223499999998 89999999999999988643211000
Q ss_pred CCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 527 GGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 527 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
-..........|..++|||||||+|||++|||+|++|+++|++||++|++||+
T Consensus 239 ~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 239 LTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001122378999999999999999999999999999999999999999985
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2e-42 Score=362.83 Aligned_cols=240 Identities=31% Similarity=0.390 Sum_probs=203.1
Q ss_pred cccccccC-CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCC
Q 036830 140 FNHKYHKA-ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSR 218 (760)
Q Consensus 140 ~~~~~~~~-G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 218 (760)
...+|..+ |+||+|+|||+||+++||+|.. .++...+++.+. ...+.
T Consensus 18 ~~~~~~~~~G~gv~I~viDsGi~~~h~~l~~--------------------------~~~~~~~~~~~~------~~~~~ 65 (260)
T cd07484 18 APKAWDITGGSGVTVAVVDTGVDPTHPDLLK--------------------------VKFVLGYDFVDN------DSDAM 65 (260)
T ss_pred hHHHHhhcCCCCCEEEEEeCCCCCCCccccc--------------------------CCcccceeccCC------CCCCC
Confidence 67899988 9999999999999999999842 122222233222 13356
Q ss_pred CCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCC
Q 036830 219 DPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSN 297 (760)
Q Consensus 219 d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 297 (760)
|..+|||||||||++...+. ..+.|+||+|+|+.+|++++.+ +...+++++|+++++.+++|||||||...
T Consensus 66 d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 66 DDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 78899999999999875332 2357999999999999998766 78889999999999999999999999883
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCC
Q 036830 298 SEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLS 377 (760)
Q Consensus 298 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 377 (760)
....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 138 -----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 138 -----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 4566777778889999999999999998888888999999999986432
Q ss_pred CCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHH
Q 036830 378 RSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGF 457 (760)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 457 (760)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCc
Q 036830 458 RIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPAT 537 (760)
Q Consensus 458 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~ 537 (760)
+..+.||++|+.. |++|||.+|++..+. +.
T Consensus 187 ----------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~--------------~~ 216 (260)
T cd07484 187 ----------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD--------------GD 216 (260)
T ss_pred ----------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC--------------CC
Confidence 3457889999876 999999999998765 67
Q ss_pred ceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 036830 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVY 581 (760)
Q Consensus 538 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~ 581 (760)
|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999 99999999999999864
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-42 Score=361.50 Aligned_cols=253 Identities=28% Similarity=0.341 Sum_probs=189.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhh
Q 036830 150 DIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAS 229 (760)
Q Consensus 150 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAG 229 (760)
||+|||||+|||++||+|.+.- .....|..+. ........|..+|||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~~--~~~~~~~~d~~~HGT~vAg 51 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDENR--RISATEVFDAGGHGTHVSG 51 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCCC--CCCCCCCCCCCCcHHHHHH
Confidence 7999999999999999997421 1111111110 0012445678899999999
Q ss_pred hcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHHHH
Q 036830 230 TAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAI 309 (760)
Q Consensus 230 i~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 309 (760)
||+|+.. ++.+.||||+|+|+.+|++.+.++..++++++|+|+++.+++|||||||... .. .+.+..
T Consensus 52 iia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~--~~--~~~~~~ 118 (254)
T cd07490 52 TIGGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTY--YS--EDPLEE 118 (254)
T ss_pred HHhcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCC--CC--CcHHHH
Confidence 9999864 2334699999999999999877788899999999999999999999999884 11 556666
Q ss_pred HHHHHHh-CCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEecc
Q 036830 310 GALHAQQ-RGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGK 388 (760)
Q Consensus 310 a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~ 388 (760)
+++...+ +|++||+||||+|......++..+++|+|||++.+........
T Consensus 119 ~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------------------- 169 (254)
T cd07490 119 AVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------------------- 169 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------------------
Confidence 6665554 6999999999999887777788899999999765421000000
Q ss_pred cccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcCCC
Q 036830 389 AIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKN 468 (760)
Q Consensus 389 ~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 468 (760)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchh
Q 036830 469 PTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548 (760)
Q Consensus 469 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 548 (760)
.........+.+|.. .....|||++|||.+|+++.... .....|..++||||||
T Consensus 170 ---------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~----------~~~~~~~~~~GTS~Aa 223 (254)
T cd07490 170 ---------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA----------NGDGQYTRLSGTSMAA 223 (254)
T ss_pred ---------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC----------CCCCCeeecccHHHHH
Confidence 000112223333432 25568999999999999865221 1126799999999999
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 549 P~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
|+|||++|||+|++|+|++++||.+|++||+
T Consensus 224 P~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 224 PHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-41 Score=361.85 Aligned_cols=209 Identities=27% Similarity=0.323 Sum_probs=170.0
Q ss_pred CCCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHH----------hC
Q 036830 215 GSSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAI----------HD 284 (760)
Q Consensus 215 ~~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~ 284 (760)
....+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+...+++++|++|++ .+
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 334567899999999999987422 234799999999999999877778899999999998 45
Q ss_pred CCcEEEecccCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCccCCCCceEEeccccccccceeeEEeCCC
Q 036830 285 GVDIISISIGLSNSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYP-FTVANTAPWLFTVAASTIDRDFQSTVLLGNG 363 (760)
Q Consensus 285 g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~ 363 (760)
+++|||||||... .....+..++..+.++|++||+||||+|... ...++..+++|+||+++.+
T Consensus 137 ~~~Iin~S~G~~~----~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 137 PAKVINLSLGGDG----ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred CCeEEEeCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 7899999999884 1156777888999999999999999999776 5667788999999986432
Q ss_pred eeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCC
Q 036830 364 KAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTER 443 (760)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~ 443 (760)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCC
Q 036830 444 GILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRP 523 (760)
Q Consensus 444 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~ 523 (760)
+.++.||++|+.. ||.|||++|.+......
T Consensus 201 ------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~ 230 (285)
T cd07496 201 ------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDG 230 (285)
T ss_pred ------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCc
Confidence 4568899999987 99999999998875432
Q ss_pred CCC-CCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 036830 524 DRP-GGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTT 577 (760)
Q Consensus 524 ~~~-~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 577 (760)
... ...........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 231 YPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 110 000112223678999999999999999999999999999999999999976
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=360.60 Aligned_cols=250 Identities=23% Similarity=0.255 Sum_probs=182.9
Q ss_pred ccccccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCC
Q 036830 139 WFNHKYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGS 216 (760)
Q Consensus 139 ~~~~~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 216 (760)
++..+|+++ |+||+||||||||+..|| |...++. + ++ .+..+ ....
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~-----~~~~ 56 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG-----ATDP 56 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC-----CCCC
Confidence 367899998 999999999999999998 6532211 0 00 00000 0133
Q ss_pred CCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEecccCC
Q 036830 217 SRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISIGLS 296 (760)
Q Consensus 217 ~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 296 (760)
..|..||||||||++. ||||+|+|+.+|++++ ..+++++||+|+++++++|||||||..
T Consensus 57 ~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~ 115 (298)
T cd07494 57 ACDENGHGTGESANLF------------------AIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYD 115 (298)
T ss_pred CCCCCCcchheeecee------------------EeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccC
Confidence 5678899999998764 8999999999999864 567799999999999999999999986
Q ss_pred CCCC--C------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEee
Q 036830 297 NSEA--D------YMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKG 368 (760)
Q Consensus 297 ~~~~--~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 368 (760)
.... . .....+..++++|.++|++||+||||++. .+++..|++|+|||++.+.. +
T Consensus 116 ~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g----- 178 (298)
T cd07494 116 LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G----- 178 (298)
T ss_pred CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C-----
Confidence 4111 0 12345778888999999999999999874 56888999999999754310 0
Q ss_pred eeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccce
Q 036830 369 TAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPY 448 (760)
Q Consensus 369 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~ 448 (760)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccC--CCCCCCCCCcccCce----------------ee
Q 036830 449 AEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSS--RGPGLPTENILKPDV----------------AA 510 (760)
Q Consensus 449 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs--~Gp~~~~~~~~KPDI----------------~A 510 (760)
.....+++ +... ..+++.|||+ +|
T Consensus 179 -------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 179 -------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred -------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCcccccccccC
Confidence 00001111 1111 1256777777 47
Q ss_pred CCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccC
Q 036830 511 PGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYD 582 (760)
Q Consensus 511 PG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~ 582 (760)
||..|.+....... .....+.|..++|||||||||||++|||+|++|.|++++||.+|++||+++.
T Consensus 221 PG~~i~~~~~~~~~------~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 221 PGSQLDRSCAAFPD------GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCcceeccccCCCC------CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 99998766532100 0011267999999999999999999999999999999999999999999763
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=352.07 Aligned_cols=240 Identities=28% Similarity=0.343 Sum_probs=191.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhh
Q 036830 151 IVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAST 230 (760)
Q Consensus 151 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 230 (760)
|+|||||+||+++||+|.+.. ++...+.+... .....|..+||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~------~~~~~~~~~HGT~vAgi 49 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN------NDPTSDIDGHGTACAGV 49 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC------CCCCCCCCCCHHHHHHH
Confidence 689999999999999998520 01111111111 12456789999999999
Q ss_pred cccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHHHH
Q 036830 231 AAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIAI 309 (760)
Q Consensus 231 ~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 309 (760)
|+|+..+. ..+.||||+|+|+.+|++...+ +...++.++++|+++.+++|||||||... ........+..
T Consensus 50 iag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~-~~~~~~~~~~~ 120 (242)
T cd07498 50 AAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSD-STESISSAIDN 120 (242)
T ss_pred HHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCC-CCchHHHHHHH
Confidence 99986422 2347999999999999998765 77889999999999999999999999875 22344567777
Q ss_pred HHHHHHh-CCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEecc
Q 036830 310 GALHAQQ-RGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGK 388 (760)
Q Consensus 310 a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~ 388 (760)
++..+.. +|+++|+||||+|......++..+++|+||+++..
T Consensus 121 ~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------- 163 (242)
T cd07498 121 AATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------- 163 (242)
T ss_pred HHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------------
Confidence 7788888 99999999999998877778888999999986532
Q ss_pred cccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcCCC
Q 036830 389 AIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKN 468 (760)
Q Consensus 389 ~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 468 (760)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchh
Q 036830 469 PTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548 (760)
Q Consensus 469 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 548 (760)
+.++.||++||.. |++|||.++.+....... ......+.|..++||||||
T Consensus 164 -----------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~-----~~~~~~~~~~~~~GTS~Aa 213 (242)
T cd07498 164 -----------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS-----AGDYPGGGYGSFSGTSFAS 213 (242)
T ss_pred -----------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc-----cccCCCCceEeeCcHHHHH
Confidence 4467899999987 999999999888543210 0112236789999999999
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 036830 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTT 577 (760)
Q Consensus 549 P~VAG~aALl~q~~P~ls~~~ik~~L~~T 577 (760)
|+|||++|||+|++|+|+++|||++|++|
T Consensus 214 p~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 214 PVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999976
No 26
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-41 Score=351.70 Aligned_cols=249 Identities=30% Similarity=0.383 Sum_probs=192.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccc---cccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccc
Q 036830 149 SDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGV---CMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGT 225 (760)
Q Consensus 149 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGT 225 (760)
+||+|||||||||++||+|.+. .|... +..+.+......-+...+. .|. ....++.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGW-NFV------NNDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCcc-ccc------CCCCCCCCCCCcHH
Confidence 6899999999999999999863 22211 1111111100000111111 111 12355678899999
Q ss_pred hhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCC
Q 036830 226 HTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMN 304 (760)
Q Consensus 226 hVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 304 (760)
||||||+|...++ ..+.||||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||... ..
T Consensus 68 ~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~-----~~ 134 (259)
T cd07473 68 HVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG-----PS 134 (259)
T ss_pred HHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----CC
Confidence 9999999987432 2347999999999999998876 88899999999999999999999999884 25
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCC---CCccC--CCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCC
Q 036830 305 DPIAIGALHAQQRGVVVICSAGNDGPYP---FTVAN--TAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRS 379 (760)
Q Consensus 305 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 379 (760)
..+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 135 ~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~---------------------------- 186 (259)
T cd07473 135 QALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN---------------------------- 186 (259)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC----------------------------
Confidence 6777888999999999999999999662 23333 34789999875432
Q ss_pred ceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHH
Q 036830 380 KTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRI 459 (760)
Q Consensus 380 ~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 459 (760)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcce
Q 036830 460 INYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYA 539 (760)
Q Consensus 460 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~ 539 (760)
+.++.||++||. +||+.|||.++++..+. +.|.
T Consensus 187 --------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~--------------~~~~ 219 (259)
T cd07473 187 --------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG--------------GGYG 219 (259)
T ss_pred --------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC--------------CcEE
Confidence 345679999985 46999999999997654 7899
Q ss_pred eeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 540 LRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 540 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
.++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 220 ~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999985
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=5.4e-41 Score=358.35 Aligned_cols=273 Identities=27% Similarity=0.318 Sum_probs=199.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|||||||||++||+|.+... .+.+| .++++.....+.+. ..|..+|||||
T Consensus 6 G~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~~---------~~d~~~HGT~v 60 (293)
T cd04842 6 GKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSDT---------KDDVDGHGTHV 60 (293)
T ss_pred CcCCEEEEEecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCCC---------CCCCCCCcchh
Confidence 9999999999999999999975321 01111 23444443333321 22789999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC--CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCc
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG--CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMND 305 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 305 (760)
||||+|...+... ...+.||||+|+|+.+|++...+ ....++..+++++.+.+++|||||||... .. ...
T Consensus 61 Agiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~--~~-~~~ 132 (293)
T cd04842 61 AGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPV--NN-GYT 132 (293)
T ss_pred heeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCC--cc-ccc
Confidence 9999998754321 11458999999999999998765 56677899999999999999999999984 11 123
Q ss_pred HHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCc
Q 036830 306 PIAIGALHAQ-Q-RGVVVICSAGNDGPYPF---TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSK 380 (760)
Q Consensus 306 ~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 380 (760)
....++.++. + +|++||+||||+|.... ..+...+++|+|||++........
T Consensus 133 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------------------- 189 (293)
T cd04842 133 LLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----------------------- 189 (293)
T ss_pred hHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----------------------
Confidence 3334444333 3 89999999999997765 566778999999997654210000
Q ss_pred eeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHH
Q 036830 381 TYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRII 460 (760)
Q Consensus 381 ~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 460 (760)
.|..
T Consensus 190 ---------------------~~~~------------------------------------------------------- 193 (293)
T cd04842 190 ---------------------GGLG------------------------------------------------------- 193 (293)
T ss_pred ---------------------cccc-------------------------------------------------------
Confidence 0000
Q ss_pred HHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCccee
Q 036830 461 NYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYAL 540 (760)
Q Consensus 461 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~ 540 (760)
.......++.||++||+. ++++||||+|||++|+++..... .........|..
T Consensus 194 --------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~-----~~~~~~~~~~~~ 246 (293)
T cd04842 194 --------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG-----GIGDTSDSAYTS 246 (293)
T ss_pred --------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC-----CCCCCChhheee
Confidence 011236689999999987 89999999999999999975420 001112267899
Q ss_pred eecccchhhhHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 036830 541 RSGTSMACPHVTGAAAFIKSVR-----R---KWTYSMIKSALMTTAT 579 (760)
Q Consensus 541 ~sGTSmAaP~VAG~aALl~q~~-----P---~ls~~~ik~~L~~TA~ 579 (760)
++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 247 ~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 247 KSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999999999999999999985 4 6677799999999985
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=7.6e-41 Score=344.09 Aligned_cols=226 Identities=32% Similarity=0.448 Sum_probs=188.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhh
Q 036830 150 DIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAS 229 (760)
Q Consensus 150 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAG 229 (760)
||+|||||+||+++||+|.+. +...++|.... .....|..+|||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~-----~~~~~~~~~HGT~vA~ 48 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD-----NNDYQDGNGHGTHVAG 48 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC-----CCCCCCCCCCHHHHHH
Confidence 799999999999999999742 11112222210 0244568899999999
Q ss_pred hcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHHH
Q 036830 230 TAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIA 308 (760)
Q Consensus 230 i~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 308 (760)
|+++.... ..+.|+||+|+|+.+|++...+ ....+++++++++++.+++|||||||... ....+.
T Consensus 49 ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-----~~~~~~ 114 (229)
T cd07477 49 IIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS-----DSPALR 114 (229)
T ss_pred HHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-----CCHHHH
Confidence 99997632 2457999999999999998776 67789999999999999999999999873 345566
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCCc--cCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEe
Q 036830 309 IGALHAQQRGVVVICSAGNDGPYPFTV--ANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAY 386 (760)
Q Consensus 309 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~ 386 (760)
.++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 115 ~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------------- 159 (229)
T cd07477 115 EAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------------- 159 (229)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------------
Confidence 777889999999999999999776654 7788999999986532
Q ss_pred cccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcC
Q 036830 387 GKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSN 466 (760)
Q Consensus 387 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 466 (760)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccc
Q 036830 467 KNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSM 546 (760)
Q Consensus 467 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSm 546 (760)
+.++.||++|+.. |+.|||.+|+++++. +.|..++||||
T Consensus 160 -------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------------~~~~~~~GTS~ 198 (229)
T cd07477 160 -------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN--------------NDYAYLSGTSM 198 (229)
T ss_pred -------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC--------------CCEEEEccHHH
Confidence 3456899999976 999999999999876 67899999999
Q ss_pred hhhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 036830 547 ACPHVTGAAAFIKSVRRKWTYSMIKSALMTT 577 (760)
Q Consensus 547 AaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 577 (760)
|||+|||++|||+|++|++++.+||++|++|
T Consensus 199 Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 199 ATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999986
No 29
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-41 Score=357.77 Aligned_cols=261 Identities=27% Similarity=0.322 Sum_probs=183.0
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|||||+|||.+||+|.+.. +...+|.+. ....|..+|||||
T Consensus 7 G~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~-------~~~~d~~gHGT~V 52 (297)
T cd07480 7 GAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG-------EDVQDGHGHGTHC 52 (297)
T ss_pred CCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC-------CCCCCCCCcHHHH
Confidence 999999999999999999997421 111222221 2356789999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCC--------
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNS-------- 298 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-------- 298 (760)
||||+|+..+ +...||||+|+|+.+|++...+ .....+++||+|+++.|++|||||||....
T Consensus 53 Agiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~ 123 (297)
T cd07480 53 AGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWP 123 (297)
T ss_pred HHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCC
Confidence 9999998643 3346999999999999987655 777789999999999999999999998631
Q ss_pred CCCCCCcHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcc-----CCCCceEEeccccccccceeeE
Q 036830 299 EADYMNDPIAIGALHA---------------QQRGVVVICSAGNDGPYPFTVA-----NTAPWLFTVAASTIDRDFQSTV 358 (760)
Q Consensus 299 ~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~p~vitVgA~~~~~~~~~~~ 358 (760)
........+......+ .++|++||+||||+|....... ...+++++|+++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~------- 196 (297)
T cd07480 124 PGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL------- 196 (297)
T ss_pred CCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC-------
Confidence 1111122233333333 6899999999999986543221 112333444332211
Q ss_pred EeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCC
Q 036830 359 LLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKI 438 (760)
Q Consensus 359 ~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~ 438 (760)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEee
Q 036830 439 WPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAA 518 (760)
Q Consensus 439 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa 518 (760)
+....|+++.+ ....||||+|||++|+++
T Consensus 197 -----------------------------------------------~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~ 225 (297)
T cd07480 197 -----------------------------------------------GRTGNFSAVAN----FSNGEVDIAAPGVDIVSA 225 (297)
T ss_pred -----------------------------------------------CCCCCccccCC----CCCCceEEEeCCCCeEee
Confidence 11112233222 223578999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCC
Q 036830 519 IVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANP 598 (760)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 598 (760)
.+. +.|..++|||||||+|||++||++|++|.+++.+++.+|+........ .........
T Consensus 226 ~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~ 285 (297)
T cd07480 226 APG--------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAART------TQFAPGLDL 285 (297)
T ss_pred cCC--------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhccc------CCCCCCCCh
Confidence 876 789999999999999999999999999999998888887743221100 001234566
Q ss_pred CCCCCcccCcc
Q 036830 599 HEMGAGEINPL 609 (760)
Q Consensus 599 ~~~G~G~vn~~ 609 (760)
..+|+|++++.
T Consensus 286 ~~~g~G~~~~~ 296 (297)
T cd07480 286 PDRGVGLGLAP 296 (297)
T ss_pred hhcCCceeecC
Confidence 77899999875
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-41 Score=351.67 Aligned_cols=245 Identities=21% Similarity=0.144 Sum_probs=178.1
Q ss_pred cccccccC---CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCC
Q 036830 140 FNHKYHKA---ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGS 216 (760)
Q Consensus 140 ~~~~~~~~---G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 216 (760)
+.++|+.. |+||+|+|||+|||.+||+|.+.... .. .. ..
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~~----~~-------~~ 46 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------LI----SG-------LT 46 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------cc----CC-------CC
Confidence 67889875 79999999999999999999742110 00 00 11
Q ss_pred CCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHh----CCCcEEEec
Q 036830 217 SRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIH----DGVDIISIS 292 (760)
Q Consensus 217 ~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~dVIN~S 292 (760)
+.|.++|||||||||||..+ +..+.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~n---------~~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKDN---------GIGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeecC---------CCceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 45778999999999998742 11247999999999999985 3356667777766 456789999
Q ss_pred ccCCCCCCC----CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc------------c-CCCCceEEeccccccccce
Q 036830 293 IGLSNSEAD----YMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTV------------A-NTAPWLFTVAASTIDRDFQ 355 (760)
Q Consensus 293 lG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~------------~-~~~p~vitVgA~~~~~~~~ 355 (760)
||....... .....+..++.++.++|++||+||||++...... + ...|++|+|||++.+.
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~--- 189 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT--- 189 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC---
Confidence 998741111 1234556678889999999999999998642211 1 1235688888754320
Q ss_pred eeEEeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCC
Q 036830 356 STVLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDD 435 (760)
Q Consensus 356 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~ 435 (760)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceE
Q 036830 436 EKIWPTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAV 515 (760)
Q Consensus 436 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 515 (760)
...++.||++|+.. ||.|||++|
T Consensus 190 -------------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i 212 (277)
T cd04843 190 -------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENV 212 (277)
T ss_pred -------------------------------------------------CCccccccCCCCcc--------ceEcCCCCe
Confidence 12268999999987 999999999
Q ss_pred EeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHH----h-CCCCCHHHHHHHHHhccc
Q 036830 516 LAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKS----V-RRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 516 ~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~ls~~~ik~~L~~TA~ 579 (760)
+++....... ......+.|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 213 ~s~~~~~~~~----~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 213 TTTGYGDLQD----LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred EecCCCCccc----ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9998653210 0111113457899999999999999999975 3 499999999999999974
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-40 Score=343.09 Aligned_cols=216 Identities=23% Similarity=0.278 Sum_probs=167.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCC-CCCCCCCCCCCCccch
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTN-KDNSGSSRDPLGHGTH 226 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~-~~~~~~~~d~~gHGTh 226 (760)
+++|+|||||||||++||+|.+. ...+.+| ...... ........|..|||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------i~~~~~~---------------~~~~~~~~~~~~~~~d~~gHGT~ 54 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------IIGGKSF---------------SPYEGDGNKVSPYYVSADGHGTA 54 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------cccCCCC---------------CCCCCCcccCCCCCCCCCCcHHH
Confidence 68999999999999999999742 1111122 111000 0001223568899999
Q ss_pred hhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-------CCHHHHHHHHHHHHhCCCcEEEecccCCCCC
Q 036830 227 TASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-------CSGAAILQAIDDAIHDGVDIISISIGLSNSE 299 (760)
Q Consensus 227 VAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 299 (760)
|||||+ |+||+|+|+.+|++...+ ++...+++||+||+++|+||||||||.....
T Consensus 55 vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~ 116 (247)
T cd07491 55 MARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE 116 (247)
T ss_pred HHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc
Confidence 999997 789999999999997643 4567899999999999999999999987410
Q ss_pred -CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-Cc--cCCCCceEEeccccccccceeeEEeCCCeeEeeeeeeccc
Q 036830 300 -ADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPF-TV--ANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSN 375 (760)
Q Consensus 300 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 375 (760)
.......+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 117 ~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~------------------------ 172 (247)
T cd07491 117 DNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED------------------------ 172 (247)
T ss_pred ccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC------------------------
Confidence 0112567788889999999999999999997654 33 4566899999986543
Q ss_pred CCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhh
Q 036830 376 LSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVA 455 (760)
Q Consensus 376 ~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~ 455 (760)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCC
Q 036830 456 GFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKP 535 (760)
Q Consensus 456 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~ 535 (760)
+.++.||++|+.. |+.|||++|+++.+... .
T Consensus 173 ------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~-----------~ 203 (247)
T cd07491 173 ------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPPL-----------S 203 (247)
T ss_pred ------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCCC-----------C
Confidence 3457899999987 99999999999865211 1
Q ss_pred CcceeeecccchhhhHHHHHHHHHHh
Q 036830 536 ATYALRSGTSMACPHVTGAAAFIKSV 561 (760)
Q Consensus 536 ~~y~~~sGTSmAaP~VAG~aALl~q~ 561 (760)
+.|..++|||||||||||++||+++.
T Consensus 204 ~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 204 NSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999985
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=9.4e-41 Score=354.45 Aligned_cols=277 Identities=33% Similarity=0.476 Sum_probs=209.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhhc
Q 036830 152 VIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTASTA 231 (760)
Q Consensus 152 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 231 (760)
+|||||||||++||+|....+ ...++.+.+.|.+... ......|..+|||||||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~~---------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~HGT~va~ii 56 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF---------------------IWSKVPGGYNFVDGNP---NPSPSDDDNGHGTHVAGII 56 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE---------------------EEEEEEEEEETTTTBS---TTTSSSTSSSHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc---------------------ccccccceeeccCCCC---CcCccccCCCccchhhhhc
Confidence 699999999999999972110 0123333444443321 1245677889999999999
Q ss_pred ccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHH-hCCCcEEEecccCCCC-CCCCCCcHHHH
Q 036830 232 AGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAI-HDGVDIISISIGLSNS-EADYMNDPIAI 309 (760)
Q Consensus 232 Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~-~~~~~~~~~~~ 309 (760)
+|.. . . ......|+||+|+|+.+|++...+....+++++|++++ +.+++|||||||.... ......+.+..
T Consensus 57 ~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 129 (282)
T PF00082_consen 57 AGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEE 129 (282)
T ss_dssp HHTT-S-S-----SSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHH
T ss_pred cccc-c-c-----cccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccc
Confidence 9986 2 1 12334799999999999998776677888999999999 8999999999998310 11123344566
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCCC---ccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEe
Q 036830 310 GALHAQQRGVVVICSAGNDGPYPFT---VANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAY 386 (760)
Q Consensus 310 a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~ 386 (760)
+++.+.++|+++|+||||+|..... .++..+++|+||+++..
T Consensus 130 ~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~----------------------------------- 174 (282)
T PF00082_consen 130 AIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN----------------------------------- 174 (282)
T ss_dssp HHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-----------------------------------
T ss_pred ccccccccCcceeeccccccccccccccccccccccccccccccc-----------------------------------
Confidence 6778999999999999999876653 45666889999975421
Q ss_pred cccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcC
Q 036830 387 GKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSN 466 (760)
Q Consensus 387 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 466 (760)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccc
Q 036830 467 KNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSM 546 (760)
Q Consensus 467 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSm 546 (760)
+.++.||++|+.. .++++||||+|||.+|.+.++.... ..|..++||||
T Consensus 175 -------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~-----------~~~~~~~GTS~ 223 (282)
T PF00082_consen 175 -------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR-----------GSYTSFSGTSF 223 (282)
T ss_dssp -------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES-----------EEEEEEESHHH
T ss_pred -------------------ccccccccccccc-ccccccccccccccccccccccccc-----------ccccccCcCCc
Confidence 3457899997543 2789999999999999998865210 34788999999
Q ss_pred hhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCccccCC
Q 036830 547 ACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPLKALN 613 (760)
Q Consensus 547 AaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~~Al~ 613 (760)
|||+|||++||++|++|+|++.+||.+|++||++++.. .....+..||||+||+++||+
T Consensus 224 Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~--------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 224 AAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST--------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET--------TSSSSHHHHTTSBE-HHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC--------CCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999987511 134566788999999999874
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-39 Score=330.88 Aligned_cols=221 Identities=24% Similarity=0.281 Sum_probs=174.9
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhh
Q 036830 150 DIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAS 229 (760)
Q Consensus 150 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAG 229 (760)
||+|||||||||++||+|.+.... +..|. ...+.. ......|..||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~---------~~~~~~-------~~~~~~d~~gHGT~vAg 52 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI---------DLEIIV-------VSAEGGDKDGHGTACAG 52 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc---------cccccc-------CCCCCCCCCCcHHHHHH
Confidence 799999999999999999752110 00110 000000 12445678999999999
Q ss_pred hcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCCCCCcHHH
Q 036830 230 TAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEADYMNDPIA 308 (760)
Q Consensus 230 i~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 308 (760)
||++ .+|+++|+.+|+++..+ +..+.+++||+|+++++++|||||||... ......+.
T Consensus 53 iia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~---~~~~~~~~ 111 (222)
T cd07492 53 IIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG---DRDFPLLK 111 (222)
T ss_pred HHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC---CCcCHHHH
Confidence 9984 46999999999998776 88899999999999999999999999874 12335667
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCCccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeeeEecc
Q 036830 309 IGALHAQQRGVVVICSAGNDGPYPFTVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPLAYGK 388 (760)
Q Consensus 309 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~ 388 (760)
.++.++.++|+++|+||||++.... .++..+++|+|++.+.+.
T Consensus 112 ~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------ 154 (222)
T cd07492 112 ELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------ 154 (222)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------------
Confidence 7788889999999999999986543 367778999999754221
Q ss_pred cccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHhcCCC
Q 036830 389 AIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYINSNKN 468 (760)
Q Consensus 389 ~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 468 (760)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeecccchh
Q 036830 469 PTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSGTSMAC 548 (760)
Q Consensus 469 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 548 (760)
.. +.+++ ++|+.|||.+|+++.+. +.|..++||||||
T Consensus 155 ------------------~~---~~~~~--------~~~~~apg~~i~~~~~~--------------~~~~~~~GTS~Aa 191 (222)
T cd07492 155 ------------------PK---SFWYI--------YVEFSADGVDIIAPAPH--------------GRYLTVSGNSFAA 191 (222)
T ss_pred ------------------Cc---ccccC--------CceEEeCCCCeEeecCC--------------CCEEEeccHHHHH
Confidence 00 11233 34999999999999876 6799999999999
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 549 PHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 549 P~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
|+|||++|||+|++|+|+++|||++|+.||+
T Consensus 192 p~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 192 PHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.2e-39 Score=346.13 Aligned_cols=255 Identities=29% Similarity=0.344 Sum_probs=177.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCC-CCCCCCCCCCCCCCCccchhh
Q 036830 150 DIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRA-STNKDNSGSSRDPLGHGTHTA 228 (760)
Q Consensus 150 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~d~~gHGThVA 228 (760)
.|+|||||||||++||+|.+.-... .+ .+ .....+... ...........|..|||||||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~-------~~---------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vA 60 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK-------NL---------VPKGGYDGKEAGETGDINDIVDKLGHGTAVA 60 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc-------cc---------ccCCCcCCccccccCCCCcCCCCCCcHhHHH
Confidence 3899999999999999998521100 00 00 000000000 000011234567899999999
Q ss_pred hhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCCC------C
Q 036830 229 STAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSEA------D 301 (760)
Q Consensus 229 Gi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~------~ 301 (760)
|+|+|+.. ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||...... .
T Consensus 61 giia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~ 128 (294)
T cd07482 61 GQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDD 128 (294)
T ss_pred HHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccch
Confidence 99998642 14999999999999998776 48899999999999999999999999864211 1
Q ss_pred CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC----------------------CccCCCCceEEeccccccccceeeEE
Q 036830 302 YMNDPIAIGALHAQQRGVVVICSAGNDGPYPF----------------------TVANTAPWLFTVAASTIDRDFQSTVL 359 (760)
Q Consensus 302 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------------------~~~~~~p~vitVgA~~~~~~~~~~~~ 359 (760)
...+.+..++..+.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 129 ~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~--------- 199 (294)
T cd07482 129 VEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN--------- 199 (294)
T ss_pred hhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC---------
Confidence 11245666777888999999999999996531 12233345555555332
Q ss_pred eCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCC
Q 036830 360 LGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIW 439 (760)
Q Consensus 360 ~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~ 439 (760)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeee
Q 036830 440 PTERGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAI 519 (760)
Q Consensus 440 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~ 519 (760)
.+.++.||++|+.. +|++|||+++....
T Consensus 200 ---------------------------------------------~~~~~~~S~~g~~~-------~~~~apG~~~~~~~ 227 (294)
T cd07482 200 ---------------------------------------------NGNLSSFSNYGNSR-------IDLAAPGGDFLLLD 227 (294)
T ss_pred ---------------------------------------------CCCcCccccCCCCc-------ceEECCCCCccccc
Confidence 24567899998754 49999999885332
Q ss_pred cCCCCC---CCC-----CCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCH-HHHHHHHHhc
Q 036830 520 VPRPDR---PGG-----IPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTY-SMIKSALMTT 577 (760)
Q Consensus 520 ~~~~~~---~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~-~~ik~~L~~T 577 (760)
...... ... .......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 228 QYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 111000 000 001123367899999999999999999999999999999 9999999986
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.3e-39 Score=346.46 Aligned_cols=250 Identities=18% Similarity=0.201 Sum_probs=181.9
Q ss_pred cccccccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCC
Q 036830 138 TWFNHKYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSG 215 (760)
Q Consensus 138 ~~~~~~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~ 215 (760)
.++..+|+.+ |+||+|+|||||||++||+|.+.... ...++|..... ..
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~----~~ 76 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP----DP 76 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC----CC
Confidence 4477899997 99999999999999999999752111 01111221110 01
Q ss_pred CC--CCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCCcEEEecc
Q 036830 216 SS--RDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGVDIISISI 293 (760)
Q Consensus 216 ~~--~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~Sl 293 (760)
.+ .|..+|||||||||+|+..+. ....||||+|+|+.+|++... .....+..++.++.+ .++||||||
T Consensus 77 ~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~ 146 (297)
T cd04059 77 TPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSW 146 (297)
T ss_pred CCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCC
Confidence 12 278899999999999986432 134799999999999999765 344455666666554 459999999
Q ss_pred cCCCCCC--CCCCcHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----ccCCCCceEEeccccccccceeeEEeCC
Q 036830 294 GLSNSEA--DYMNDPIAIGALHAQQ-----RGVVVICSAGNDGPYPFT----VANTAPWLFTVAASTIDRDFQSTVLLGN 362 (760)
Q Consensus 294 G~~~~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~~~ 362 (760)
|...... ......+..++.++.. +|++||+||||+|..... .....|++|+|||++.+
T Consensus 147 g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~----------- 215 (297)
T cd04059 147 GPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN----------- 215 (297)
T ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-----------
Confidence 9874211 1222334444555543 699999999999973222 12456889999986432
Q ss_pred CeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCC
Q 036830 363 GKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTE 442 (760)
Q Consensus 363 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~ 442 (760)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCce-------E
Q 036830 443 RGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVA-------V 515 (760)
Q Consensus 443 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-------I 515 (760)
+.++.||++|+.. ++.|||.. |
T Consensus 216 -------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i 244 (297)
T cd04059 216 -------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEASI 244 (297)
T ss_pred -------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCce
Confidence 4567899999987 89999987 6
Q ss_pred EeeecCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 516 LAAIVPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 516 ~Sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
+++.... ....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 245 ~~~~~~~-----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 245 VTTDLGG-----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EeCCCCC-----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 6654431 0156788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.5e-38 Score=329.70 Aligned_cols=243 Identities=28% Similarity=0.309 Sum_probs=186.8
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchh
Q 036830 148 ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHT 227 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThV 227 (760)
|+||+|+|||+||+.+||+|.+...... .+ ..... .......|..+|||||
T Consensus 2 G~gv~VaiiDsG~~~~h~~l~~~~~~~~------------~~---------------~~~~~--~~~~~~~~~~~HGT~v 52 (267)
T cd04848 2 GAGVKVGVIDSGIDLSHPEFAGRVSEAS------------YY---------------VAVND--AGYASNGDGDSHGTHV 52 (267)
T ss_pred CCceEEEEEeCCCCCCCccccCcccccc------------cc---------------ccccc--ccCCCCCCCCChHHHH
Confidence 8999999999999999999985321100 00 00000 0013445688999999
Q ss_pred hhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC--CCHHHHHHHHHHHHhCCCcEEEecccCCCCCCC----
Q 036830 228 ASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG--CSGAAILQAIDDAIHDGVDIISISIGLSNSEAD---- 301 (760)
Q Consensus 228 AGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~---- 301 (760)
||||+|...+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||.......
T Consensus 53 agiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~ 123 (267)
T cd04848 53 AGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTT 123 (267)
T ss_pred HHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccc
Confidence 9999998632 4458999999999999998764 667889999999999999999999999852111
Q ss_pred ------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------cCCCCceEEeccccccccceeeEEeCCCeeE
Q 036830 302 ------YMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTV---------ANTAPWLFTVAASTIDRDFQSTVLLGNGKAI 366 (760)
Q Consensus 302 ------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 366 (760)
.....+...+..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~--------------- 188 (267)
T cd04848 124 YKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN--------------- 188 (267)
T ss_pred hhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC---------------
Confidence 2456667777889999999999999998654333 2345788999986543
Q ss_pred eeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCccc
Q 036830 367 KGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGIL 446 (760)
Q Consensus 367 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~ 446 (760)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceec--ccCCCCCCCCCCcccCceeeCCceEEeeecCCCC
Q 036830 447 PYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAY--FSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPD 524 (760)
Q Consensus 447 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~ 524 (760)
+.... ||++|+.. ..++++|||.+|+++.+...
T Consensus 189 ---------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~- 223 (267)
T cd04848 189 ---------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG- 223 (267)
T ss_pred ---------------------------------------CCcccccccccchhh-----hhheeecCcCceeecccCCC-
Confidence 11223 47887643 23479999999999976311
Q ss_pred CCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 036830 525 RPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTAT 579 (760)
Q Consensus 525 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 579 (760)
..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 224 -----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 -----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 67889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=338.03 Aligned_cols=367 Identities=24% Similarity=0.333 Sum_probs=274.3
Q ss_pred CCCCcEEEEeCCCCCcccccccCcchHHHHHHHHHHHHhhCCCccc------cccceEEEeccceeeEEEEeCH-----H
Q 036830 29 EIPKPYIVYMGSSSRSNLIIQNGEDVEIAKLNHMQLLSSIIPSEES------ERLSLIHHYKHAFKGFSAILTD-----S 97 (760)
Q Consensus 29 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~y~~~~~g~s~~l~~-----~ 97 (760)
..+..|||.|+.-... ..|...+++.++..+. .+...-..|-.-|.-+-++-.. -
T Consensus 47 vve~EyIv~F~~y~~A--------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~ 112 (1033)
T KOG4266|consen 47 VVESEYIVRFKQYKPA--------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVG 112 (1033)
T ss_pred eecceeEEEecccccc--------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhh
Confidence 3567899999987654 3455566666653321 1223344555556666664432 2
Q ss_pred HHHHhcCCCCeEEEEeCcccccccC------------CCcccc-cc-------------ccCCC---------ccccccc
Q 036830 98 EASALSGHDHVVSVFPDPVLQLHTT------------RSWDFL-AA-------------AAKPA---------KNTWFNH 142 (760)
Q Consensus 98 ~i~~L~~~p~V~~V~~~~~~~~~~~------------~s~~~~-g~-------------~~~~~---------~~~~~~~ 142 (760)
++++|..+|.|+.|.|.+.+.+-.. .+..++ |. ....+ .+.+++-
T Consensus 113 ~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~ 192 (1033)
T KOG4266|consen 113 EIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADH 192 (1033)
T ss_pred eeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhh
Confidence 5899999999999999887654211 000000 00 00011 1245778
Q ss_pred ccccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCC
Q 036830 143 KYHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDP 220 (760)
Q Consensus 143 ~~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~ 220 (760)
+|+++ |++|+|||.|||+..+||.|+.- ....++ .+ .....|.
T Consensus 193 LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv-------------KERTNW---------------TN-------E~tLdD~ 237 (1033)
T KOG4266|consen 193 LWKKGYTGAKVKVAIFDTGLRADHPHFRNV-------------KERTNW---------------TN-------EDTLDDN 237 (1033)
T ss_pred HHhccccCCceEEEEeecccccCCccccch-------------hhhcCC---------------cC-------ccccccC
Confidence 99999 99999999999999999999741 111112 11 1455678
Q ss_pred CCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHHhCCCcEEEecccCCCCC
Q 036830 221 LGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAIHDGVDIISISIGLSNSE 299 (760)
Q Consensus 221 ~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 299 (760)
.||||.|||+|||.. ...|.||+++|+++|||.+.. ...+..++|+.||+....||+|+|+|++
T Consensus 238 lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--- 302 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--- 302 (1033)
T ss_pred cccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---
Confidence 999999999999874 236999999999999998776 8889999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCCC--CceEEeccccccccceeeEEeCCCeeEeeeeeecccCC
Q 036830 300 ADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANTA--PWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLS 377 (760)
Q Consensus 300 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~--p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 377 (760)
++.+.++-.-+-...+..|++|.|+||+||-.++..+++ ..||.||..+.
T Consensus 303 -DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf--------------------------- 354 (1033)
T KOG4266|consen 303 -DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF--------------------------- 354 (1033)
T ss_pred -ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc---------------------------
Confidence 478888776677888999999999999999999888766 36677764321
Q ss_pred CCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHH
Q 036830 378 RSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGF 457 (760)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 457 (760)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCC----CCCcccCceeeCCceEEeeecCCCCCCCCCCCCC
Q 036830 458 RIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLP----TENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGE 533 (760)
Q Consensus 458 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~ 533 (760)
.+.+|.|||||-+.+ ..||+||||++-|.+|......
T Consensus 355 ---------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------------ 395 (1033)
T KOG4266|consen 355 ---------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------------ 395 (1033)
T ss_pred ---------------------------cchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------------
Confidence 267899999997654 3789999999999999876544
Q ss_pred CCCcceeeecccchhhhHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCcc
Q 036830 534 KPATYALRSGTSMACPHVTGAAAFIKS----VRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPL 609 (760)
Q Consensus 534 ~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~ 609 (760)
.+...+||||.|+|.|||+++|+.+ +.--+.|+.+|++|+.+|.++.. ..-+.||+|++|+.
T Consensus 396 --~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------------~NMfEQGaGkldLL 461 (1033)
T KOG4266|consen 396 --TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------------PNMFEQGAGKLDLL 461 (1033)
T ss_pred --ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC------------CchhhccCcchhHH
Confidence 6788999999999999999999966 33456899999999999998732 34578999999999
Q ss_pred ccCCCceeeec
Q 036830 610 KALNPGLVFKT 620 (760)
Q Consensus 610 ~Al~~~l~~~~ 620 (760)
++++--+-|.+
T Consensus 462 ~syqiL~SYkP 472 (1033)
T KOG4266|consen 462 ESYQILKSYKP 472 (1033)
T ss_pred HHHHHHHhcCC
Confidence 99874444544
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-33 Score=308.82 Aligned_cols=359 Identities=24% Similarity=0.255 Sum_probs=232.4
Q ss_pred CCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCC-C--CCHHHHHHHHHHHHhCCCcEEEecccCC
Q 036830 220 PLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEG-G--CSGAAILQAIDDAIHDGVDIISISIGLS 296 (760)
Q Consensus 220 ~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 296 (760)
...|||||||||+|+..+.. ...||||+|+|+++++.+.. | -+...+.+|+..++++.+||||||+|-+
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 45699999999999985432 34699999999999997643 2 4556789999999999999999999988
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccCC---CCceEEeccccccccceeeEEeCCCeeEeeeeeec
Q 036830 297 NSEADYMNDPIAIGALHAQQRGVVVICSAGNDGPYPFTVANT---APWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISL 373 (760)
Q Consensus 297 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 373 (760)
. ..+.....++..-+.+.++|+++|+||||+||.-.+++.+ ...+|.|||.-.....
T Consensus 381 a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------- 440 (1304)
T KOG1114|consen 381 A-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------- 440 (1304)
T ss_pred C-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH-------------------
Confidence 6 3333345555555566689999999999999998887753 3588999885221100
Q ss_pred ccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEech
Q 036830 374 SNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGK 453 (760)
Q Consensus 374 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~ 453 (760)
T Consensus 441 -------------------------------------------------------------------------------- 440 (1304)
T KOG1114|consen 441 -------------------------------------------------------------------------------- 440 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCC
Q 036830 454 VAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGE 533 (760)
Q Consensus 454 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~ 533 (760)
...+... ..-......+|||||+. ||-+--.|+|||+.|.+--.-..
T Consensus 441 ---~a~y~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl---------- 487 (1304)
T KOG1114|consen 441 ---QAEYSVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL---------- 487 (1304)
T ss_pred ---Hhhhhhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh----------
Confidence 0000000 01124478899999998 89999999999999976521111
Q ss_pred CCCcceeeecccchhhhHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCcc
Q 036830 534 KPATYALRSGTSMACPHVTGAAAFIKS----VRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPL 609 (760)
Q Consensus 534 ~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~ 609 (760)
..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++. ..++.+|.|+|+++
T Consensus 488 --q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~------------id~faqG~GmlqVd 553 (1304)
T KOG1114|consen 488 --QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD------------IDSFAQGQGMLQVD 553 (1304)
T ss_pred --hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc------------cchhccCcceeehh
Confidence 5567899999999999999999955 56789999999999999997732 36788999999999
Q ss_pred ccCCCceeeecChhhHHhhhhhcCCCccceeccccccccCCCCCCcccccCcCCCcEEEeecccCceeEEEEE--EEEec
Q 036830 610 KALNPGLVFKTTIKDYLRFLCYYGYSKKNIRSMTNTTFNCPKKSSAKLISNINYPSISISKLARQGAIRTVKR--TVTNV 687 (760)
Q Consensus 610 ~Al~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~t~~r--tv~N~ 687 (760)
+|.+ |-.+. -..|...+|. |..-.|. +|...--.-.+-..+-|+ ..++.+ .+.|-
T Consensus 554 kAyE----yL~q~--~~~f~~~l~f----~~v~VgN--~~srGIyLRep~~~~~p~-----------e~~i~VePiF~~~ 610 (1304)
T KOG1114|consen 554 KAYE----YLAQS--DFSFPNALGF----INVNVGN--SCSRGIYLREPTQVCSPS-----------EHTIGVEPIFENG 610 (1304)
T ss_pred HHHH----HHHHh--hhcCCcccee----EEEeecc--ccccceEecCCcccCCcc-----------ccceeccccccCc
Confidence 9976 21111 0112222221 0001111 121100000000000000 011111 01111
Q ss_pred CC---CCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEEecCCCCceEEEEEEEC-----CceEEEEEEEEE
Q 036830 688 GS---PNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFGKEASSGYNYGSITWSD-----DRHSVRMMFAVD 758 (760)
Q Consensus 688 ~~---~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~-----~~~~v~~P~~~~ 758 (760)
-. ....|.+.+..-..-.+.-.|+.|-+ .++.+.+.|+|++.....+.+++.|.--| .++..|||+.|.
T Consensus 611 ~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 611 EENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred cccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 10 11222222222111113345777777 45677899999998888888889888654 278999999875
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-33 Score=288.57 Aligned_cols=195 Identities=22% Similarity=0.190 Sum_probs=143.1
Q ss_pred CCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHH--HhCCCcEEEeccc
Q 036830 217 SRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDA--IHDGVDIISISIG 294 (760)
Q Consensus 217 ~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~SlG 294 (760)
..|.++|||||||||||.. |++|+++|+..++... ....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 4578999999999999874 6679999987665321 223456777888 6789999999999
Q ss_pred CCCCCCC-----CCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CccCCCCceEEeccccccccceeeEEeCCC
Q 036830 295 LSNSEAD-----YMNDPIAIGALHAQQR-GVVVICSAGNDGPYPF-----TVANTAPWLFTVAASTIDRDFQSTVLLGNG 363 (760)
Q Consensus 295 ~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVgA~~~~~~~~~~~~~~~~ 363 (760)
... ... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 95 ~~~-~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 95 EGL-KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred cCC-CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 874 211 1234566677777666 9999999999997532 23456689999998754310
Q ss_pred eeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCC
Q 036830 364 KAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTER 443 (760)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~ 443 (760)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCC
Q 036830 444 GILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRP 523 (760)
Q Consensus 444 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~ 523 (760)
....+.||++|.....++..||||+|||++|++ +.
T Consensus 164 -----------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~-- 198 (247)
T cd07488 164 -----------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD-- 198 (247)
T ss_pred -----------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC--CC--
Confidence 012345566442222377899999999999998 32
Q ss_pred CCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCH------HHHHHHHHhc
Q 036830 524 DRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTY------SMIKSALMTT 577 (760)
Q Consensus 524 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~------~~ik~~L~~T 577 (760)
+.|..++|||||||||||++|||++++|.+.+ .++|.+|+.|
T Consensus 199 ------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 199 ------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 56889999999999999999999999887764 4566666655
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=3.1e-31 Score=273.43 Aligned_cols=234 Identities=31% Similarity=0.413 Sum_probs=178.0
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCCCCCCccchhhhh
Q 036830 151 IVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSRDPLGHGTHTAST 230 (760)
Q Consensus 151 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 230 (760)
|+|+|||+|++++||+|... ......+.+ +.... .......+..+||||||++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~~---------------~~~~~---~~~~~~~~~~~HGt~va~~ 53 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGND---------------DDDNE---NGPTDPDDGNGHGTHVAGI 53 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcccccc---------------cccCc---CCCCCCCCCCCcHHHHHHH
Confidence 68999999999999987210 000000000 00000 0012345688999999999
Q ss_pred cccccccccccccccCCcccccCCCCeEEEEEeccCCC-CCHHHHHHHHHHHH-hCCCcEEEecccCCCCCCCCCCcHHH
Q 036830 231 AAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGG-CSGAAILQAIDDAI-HDGVDIISISIGLSNSEADYMNDPIA 308 (760)
Q Consensus 231 ~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~~ 308 (760)
+++...+. ...|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||... .. ....+.
T Consensus 54 i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~--~~-~~~~~~ 121 (241)
T cd00306 54 IAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPG--SP-PSSALS 121 (241)
T ss_pred HhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCC--CC-CCHHHH
Confidence 99986432 226999999999999998766 67889999999999 899999999999984 11 345667
Q ss_pred HHHHHHHhC-CcEEEEecCCCCCCCC---CccCCCCceEEeccccccccceeeEEeCCCeeEeeeeeecccCCCCceeee
Q 036830 309 IGALHAQQR-GVVVICSAGNDGPYPF---TVANTAPWLFTVAASTIDRDFQSTVLLGNGKAIKGTAISLSNLSRSKTYPL 384 (760)
Q Consensus 309 ~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~ 384 (760)
..+..+.++ |+++|+|+||.+.... ..++..+++|+||+++.+.
T Consensus 122 ~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------------------------- 169 (241)
T cd00306 122 EAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------------------------- 169 (241)
T ss_pred HHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------------------------
Confidence 777888888 9999999999997776 4677889999999875431
Q ss_pred EecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcccceEEechhhHHHHHHHHh
Q 036830 385 AYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGILPYAEVGKVAGFRIINYIN 464 (760)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 464 (760)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccCceeccCCCCCce-ecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCCCCCCCCCCCCCcceeeec
Q 036830 465 SNKNPTATILPTVTIPRHRPAPVV-AYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDRPGGIPAGEKPATYALRSG 543 (760)
Q Consensus 465 ~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~~y~~~sG 543 (760)
.. ..++++|+ |||+.|||.++.+..... ...+..++|
T Consensus 170 ----------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~~------------~~~~~~~~G 207 (241)
T cd00306 170 ----------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTTG------------GGGYATLSG 207 (241)
T ss_pred ----------------------CccCCcCCCCC--------CceEEeCcCCccCcccCC------------CCCeEeecc
Confidence 11 13444444 569999999998751111 168999999
Q ss_pred ccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 036830 544 TSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTT 577 (760)
Q Consensus 544 TSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 577 (760)
||||||+|||++||++|++|++++.++|.+|++|
T Consensus 208 TS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 208 TSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.8e-23 Score=237.69 Aligned_cols=271 Identities=28% Similarity=0.389 Sum_probs=195.9
Q ss_pred ccccccc--C--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCC
Q 036830 140 FNHKYHK--A--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSG 215 (760)
Q Consensus 140 ~~~~~~~--~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~ 215 (760)
....|.. + |+|++|+|||+||+..||+|.+.... .++|.+... ..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~ 177 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGDP----EP 177 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCCC----CC
Confidence 3456664 4 99999999999999999999753110 012222110 01
Q ss_pred CCCCCCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCC-C-CCHHHHHHHHHHHHhCC--CcEEEe
Q 036830 216 SSRDPLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEG-G-CSGAAILQAIDDAIHDG--VDIISI 291 (760)
Q Consensus 216 ~~~d~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~dVIN~ 291 (760)
...|..+|||||+|++++.... ......|+||+++++.++++... + ....+++++++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999984311 12234799999999999999865 5 77788899999999999 999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CccCCC--CceEEeccccccccceeeEEeCCCe
Q 036830 292 SIGLSNSEADYMNDPIAIGALHAQQRG-VVVICSAGNDGPYPF----TVANTA--PWLFTVAASTIDRDFQSTVLLGNGK 364 (760)
Q Consensus 292 SlG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~~~~~~~ 364 (760)
|+|.. ........+..++..+...| +++|+|+||.|.... ..+... +.+++|++.+.
T Consensus 251 s~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~-------------- 314 (508)
T COG1404 251 SLGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL-------------- 314 (508)
T ss_pred cCCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC--------------
Confidence 99985 12234456666777887777 999999999996652 122222 35666665332
Q ss_pred eEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCc
Q 036830 365 AIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERG 444 (760)
Q Consensus 365 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~ 444 (760)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEe-----ee
Q 036830 445 ILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLA-----AI 519 (760)
Q Consensus 445 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~S-----a~ 519 (760)
.+.++.||++|+.. ..+++|||.+|.+ .+
T Consensus 315 ----------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~ 348 (508)
T COG1404 315 ----------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTL 348 (508)
T ss_pred ----------------------------------------CCccccccccCCCC------CcceeCCCccccccccceee
Confidence 15567899999741 2299999999998 44
Q ss_pred cCCCCCCCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCC-CCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCC
Q 036830 520 VPRPDRPGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRR-KWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANP 598 (760)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 598 (760)
+... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++... ......
T Consensus 349 ~~~~------------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 405 (508)
T COG1404 349 PGDG------------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT-----------PLSGVD 405 (508)
T ss_pred eCCc------------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc-----------cCCccc
Confidence 4310 2499999999999999999999999999 899999999988888730 112344
Q ss_pred CCCCCcccCccccCC
Q 036830 599 HEMGAGEINPLKALN 613 (760)
Q Consensus 599 ~~~G~G~vn~~~Al~ 613 (760)
..++.|..+...+..
T Consensus 406 ~~~~~~~~~~~~~~~ 420 (508)
T COG1404 406 NLVGGGLANLDAAAT 420 (508)
T ss_pred cccccCccccccccc
Confidence 556777666655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.2e-23 Score=207.69 Aligned_cols=421 Identities=15% Similarity=0.201 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCcccccccCcchHHHHHHHHHHHHhhCCCccccccceEEEeccce
Q 036830 8 LQLLPFLCLHWLIFVASTSSNEIPKPYIVYMGSSSRSNLIIQNGEDVEIAKLNHMQLLSSIIPSEESERLSLIHHYKHAF 87 (760)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ 87 (760)
..+.+|++|+|....+......-.+.|+|+|+..... ++..++...| - +......+...-.|.|. -
T Consensus 8 ~l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~-------~~ah~va~~h-g----f~nrg~~~a~d~eyhf~--h 73 (629)
T KOG3526|consen 8 DLIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGL-------EDAHRVAKRH-G----FINRGQVAASDNEYHFV--H 73 (629)
T ss_pred HHHHHHHHHHHHHhccccCcceeeeeEEEEEeccCCh-------HHHHHHHHHh-C----ccccccccccCceeeee--c
Confidence 3455667777666666666666778999999998643 0111111111 1 11111111222234443 2
Q ss_pred eeEEE---EeCHHHHHHhcCCCCeEEEEeCcccccc------------------cCCCcccccccc---CCCcccccccc
Q 036830 88 KGFSA---ILTDSEASALSGHDHVVSVFPDPVLQLH------------------TTRSWDFLAAAA---KPAKNTWFNHK 143 (760)
Q Consensus 88 ~g~s~---~l~~~~i~~L~~~p~V~~V~~~~~~~~~------------------~~~s~~~~g~~~---~~~~~~~~~~~ 143 (760)
+++.- +-+...-++|.++|.|+-+....-+... -..+|-+....+ ......++.++
T Consensus 74 ~~l~har~rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~a 153 (629)
T KOG3526|consen 74 PALVHARTRRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEA 153 (629)
T ss_pred cccchhhhhcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHH
Confidence 33222 1222345678888888776644333221 112332221111 11113557789
Q ss_pred cccC--CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccCccceecccccCCCCCCCCCCCCCC--C
Q 036830 144 YHKA--ASDIVIGVIDTGIWPESPSFNDQGMGEIPSRWKGVCMESPDFKKSHCNRKLIGARHCSRASTNKDNSGSSR--D 219 (760)
Q Consensus 144 ~~~~--G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~--d 219 (760)
|.++ |++|+++|.|.||||-|||++. +|+ .-..++|..+. +++.|+ |
T Consensus 154 wa~g~tgknvttaimddgvdymhpdlk~------------------nyn-------aeasydfssnd----pfpyprytd 204 (629)
T KOG3526|consen 154 WALGYTGKNVTTAIMDDGVDYMHPDLKS------------------NYN-------AEASYDFSSND----PFPYPRYTD 204 (629)
T ss_pred HhhcccCCCceEEeecCCchhcCcchhc------------------ccC-------ceeecccccCC----CCCCCcccc
Confidence 9999 9999999999999999999973 111 11223333221 222222 2
Q ss_pred --CCCccchhhhhcccccccccccccccCCcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHh-CCCcEEEecccCC
Q 036830 220 --PLGHGTHTASTAAGNYVSNAIYFGLAGGTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIH-DGVDIISISIGLS 296 (760)
Q Consensus 220 --~~gHGThVAGi~Ag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~ 296 (760)
.+.|||.|||-+++...++ .+|+ |||.+.++..+|+++. ....|+++|-..-.+ ...+|.+-|||..
T Consensus 205 dwfnshgtrcagev~aardng--icgv------gvaydskvagirmldq--pymtdlieansmghep~kihiysaswgpt 274 (629)
T KOG3526|consen 205 DWFNSHGTRCAGEVVAARDNG--ICGV------GVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPT 274 (629)
T ss_pred hhhhccCccccceeeeeccCC--ceee------eeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcC
Confidence 5789999999888776553 4665 9999999999999965 456666666433332 3468999999988
Q ss_pred CCCCCCCCcHHH---HHHHHHH-----hCCcEEEEecCCCCCCC-CCcc--CCCCceEEeccccccccceeeEEeCCCee
Q 036830 297 NSEADYMNDPIA---IGALHAQ-----QRGVVVICSAGNDGPYP-FTVA--NTAPWLFTVAASTIDRDFQSTVLLGNGKA 365 (760)
Q Consensus 297 ~~~~~~~~~~~~---~a~~~a~-----~~Gi~vV~AAGN~G~~~-~~~~--~~~p~vitVgA~~~~~~~~~~~~~~~~~~ 365 (760)
. .....+.+-. .|+-+-+ ..|-+.|.|+|..|.+. +... +.+-|.|++.+.-.+ |+
T Consensus 275 d-dgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-----------g~- 341 (629)
T KOG3526|consen 275 D-DGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-----------GE- 341 (629)
T ss_pred C-CCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC-----------Cc-
Confidence 5 2222332221 1222222 35679999999888432 2222 233466666432111 00
Q ss_pred EeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccchhhhhhhhcCceEEEEEcCCCCCCCCCCcc
Q 036830 366 IKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGRKIAVAENVEAQGLIFINDDEKIWPTERGI 445 (760)
Q Consensus 366 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gkk~~~~~~~Ga~~~i~~~~~~~~~~~~~~~ 445 (760)
....++.|..
T Consensus 342 ------------------------------nahydescss---------------------------------------- 351 (629)
T KOG3526|consen 342 ------------------------------NAHYDESCSS---------------------------------------- 351 (629)
T ss_pred ------------------------------cccccchhhH----------------------------------------
Confidence 0000111211
Q ss_pred cceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCCCCCCcccCceeeCCceEEeeecCCCCC
Q 036830 446 LPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGLPTENILKPDVAAPGVAVLAAIVPRPDR 525 (760)
Q Consensus 446 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~ 525 (760)
-..+.||+-|..+ +- |+ -.+
T Consensus 352 ----------------------------------------tlastfsng~rnp--------et---gv--att------- 371 (629)
T KOG3526|consen 352 ----------------------------------------TLASTFSNGGRNP--------ET---GV--ATT------- 371 (629)
T ss_pred ----------------------------------------HHHHHhhcCCcCC--------Cc---ce--eee-------
Confidence 1234577766543 11 11 111
Q ss_pred CCCCCCCCCCCcceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCC----cCCCCCCCCCCCCC
Q 036830 526 PGGIPAGEKPATYALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTP----LTNSSGNNANPHEM 601 (760)
Q Consensus 526 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p----~~~~~~~~~~~~~~ 601 (760)
+-+......-||||.|+|-.||+.||.++++|.|+..+++.+-.-|..+..-.... +.-+.-..-.+.-|
T Consensus 372 ------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlf 445 (629)
T KOG3526|consen 372 ------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLF 445 (629)
T ss_pred ------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeeccc
Confidence 11114455779999999999999999999999999999999877777654211100 00111233456679
Q ss_pred CCcccCccccCCCceeeecChhhHHhhhhhcC
Q 036830 602 GAGEINPLKALNPGLVFKTTIKDYLRFLCYYG 633 (760)
Q Consensus 602 G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~g 633 (760)
|+|.+|+.+-+..+.-+...+.. |-|..|
T Consensus 446 gfgvldagamv~lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 446 GFGVLDAGAMVMLAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred ccccccHHHHHHHHHHhccCCCc---eeeccc
Confidence 99999998887766666665554 347766
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4.8e-17 Score=177.84 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=81.0
Q ss_pred CcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhC---CCcEEEecccCCCCC-CCCCCcHHHHHHHHHHhCCcEEE
Q 036830 247 GTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHD---GVDIISISIGLSNSE-ADYMNDPIAIGALHAQQRGVVVI 322 (760)
Q Consensus 247 g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV 322 (760)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... .....+.+..++.+|..+||+||
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 345799999999999998642 45677888888877 999999999998410 01123567778889999999999
Q ss_pred EecCCCCCCCC-----------CccCCCCceEEeccccccc
Q 036830 323 CSAGNDGPYPF-----------TVANTAPWLFTVAASTIDR 352 (760)
Q Consensus 323 ~AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~ 352 (760)
+|+||+|.... ..++..|+|++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 3467889999999987654
No 44
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=3.4e-09 Score=90.13 Aligned_cols=78 Identities=33% Similarity=0.452 Sum_probs=57.1
Q ss_pred cEEEEeCCCCCcccccccCcchHHHHHHHHHHHHhhCCCc----cccccceEEEeccceeeEEEEeCHHHHHHhcCCCCe
Q 036830 33 PYIVYMGSSSRSNLIIQNGEDVEIAKLNHMQLLSSIIPSE----ESERLSLIHHYKHAFKGFSAILTDSEASALSGHDHV 108 (760)
Q Consensus 33 ~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~y~~~~~g~s~~l~~~~i~~L~~~p~V 108 (760)
+|||.|++.... ....+.|.+++.+++.+. .....++.+.|+..||||+++++++++++|+++|+|
T Consensus 1 ~YIV~~k~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V 70 (82)
T PF05922_consen 1 RYIVVFKDDASA----------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGV 70 (82)
T ss_dssp EEEEEE-TTSTH----------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTE
T ss_pred CEEEEECCCCCc----------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCe
Confidence 699999998654 113566666666544321 235678999999999999999999999999999999
Q ss_pred EEEEeCcccccc
Q 036830 109 VSVFPDPVLQLH 120 (760)
Q Consensus 109 ~~V~~~~~~~~~ 120 (760)
++|+||+.++++
T Consensus 71 ~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 71 KSVEPDQVVSLH 82 (82)
T ss_dssp EEEEEECEEEE-
T ss_pred EEEEeCceEecC
Confidence 999999998764
No 45
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.65 E-value=4.6e-07 Score=81.98 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=62.0
Q ss_pred EEEeecccCceeEEEEEEEEecCCCCeEEEEEEeCC--------CCc-----------EEEEecceeEEeeCceEEEEEE
Q 036830 666 ISISKLARQGAIRTVKRTVTNVGSPNATYISMVNAP--------SGL-----------AVKVFPQKLTFVEGIIKLSFKA 726 (760)
Q Consensus 666 ~~~~~~~~~~~~~t~~rtv~N~~~~~~~y~~~~~~~--------~g~-----------~v~v~p~~~~~~~~~~~~~~~v 726 (760)
|++++... ..++++||+|.|+.+.+|+++.... .|. .++..|.++++ ++|++++|+|
T Consensus 1 i~L~d~~~---~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTGN---KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE-S---EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccCC---ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 45667755 7899999999999999999987621 111 56777888888 7899999999
Q ss_pred EEEEec----CCCCceEEEEEEECC-c-eEEEEEEE
Q 036830 727 SFFGKE----ASSGYNYGSITWSDD-R-HSVRMMFA 756 (760)
Q Consensus 727 t~~~~~----~~~~~~~G~~~~~~~-~-~~v~~P~~ 756 (760)
+++... ..+.+++|+|.+++. . +.++|||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999833 568999999999975 4 48999996
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=97.16 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=60.0
Q ss_pred eeecccchhhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCCcCCCCCCCCCCCCCCCcccCccccCCC
Q 036830 540 LRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSALMTTATVYDNTGTPLTNSSGNNANPHEMGAGEINPLKALNP 614 (760)
Q Consensus 540 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~G~G~vn~~~Al~~ 614 (760)
--.|||.++|+.||+.+|.++++|.++..++..+...++.........++.+.........+|+|++|...-+..
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhh
Confidence 346999999999999999999999999999999999999876443335554444445566799999999877664
No 47
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.40 E-value=1.3e-06 Score=82.65 Aligned_cols=102 Identities=27% Similarity=0.318 Sum_probs=73.4
Q ss_pred CceeeeEecccccccccccccccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCCC---CC
Q 036830 379 SKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIWP---TE 442 (760)
Q Consensus 379 ~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~~---~~ 442 (760)
....+++|.+. |....+...+++|| |..+++++||.++|++|+...... ..
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 45677777543 33444445566666 889999999999999998765431 11
Q ss_pred CcccceEEechhhHHHHHHHHhcCCCCeEEEccCceeccCCCCCceecccCCCCCC
Q 036830 443 RGILPYAEVGKVAGFRIINYINSNKNPTATILPTVTIPRHRPAPVVAYFSSRGPGL 498 (760)
Q Consensus 443 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 498 (760)
...+|++.|+.++|+.|++|+++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 34444444333 45678899999999963
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-06 Score=100.91 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=59.6
Q ss_pred CcccccCCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCCC-cEEEecccCCCC-CCCC--CCcHHHHHHHHHHhCCcEEE
Q 036830 247 GTARGGSPFSRIASYKACKEGGCSGAAILQAIDDAIHDGV-DIISISIGLSNS-EADY--MNDPIAIGALHAQQRGVVVI 322 (760)
Q Consensus 247 g~~~GVAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~~-~~~~--~~~~~~~a~~~a~~~Gi~vV 322 (760)
+-..-+||+|+|..|-+-. .....+..|+.+....=+ -++-.||+.... ...+ .-+.+..-...|.++|+.++
T Consensus 286 E~s~A~AP~A~I~lvvap~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAPN---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhhccCccCceEEEEcCC---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 3446789999999987722 222222333333322211 334456665421 1111 22444555578889999999
Q ss_pred EecCCCCCCCCC--------ccCCCCceEEecc
Q 036830 323 CSAGNDGPYPFT--------VANTAPWLFTVAA 347 (760)
Q Consensus 323 ~AAGN~G~~~~~--------~~~~~p~vitVgA 347 (760)
+|+|.+|....+ .++.+|++++||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999866543 3467899999997
No 49
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.24 E-value=7.8e-06 Score=75.56 Aligned_cols=108 Identities=40% Similarity=0.563 Sum_probs=82.1
Q ss_pred EEeCCCeeEeeeeeecccCCCCceeeeEecccccccccccccccccccCCCCCccccch--------------hhhhhhh
Q 036830 358 VLLGNGKAIKGTAISLSNLSRSKTYPLAYGKAIAVNSTLVSQASQCLYTTLYPMDTRGR--------------KIAVAEN 423 (760)
Q Consensus 358 ~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~Gk--------------k~~~~~~ 423 (760)
+.++|++++.|++++.... ..+++++.... ........|.+..++..+++|| |..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHH
Confidence 6789999999999996443 45677763321 2334457898888888888888 5677899
Q ss_pred cCceEEEEEcCCCCCC--CCCCcccceEEechhhHHHHHHHHhcCCCCeEE
Q 036830 424 VEAQGLIFINDDEKIW--PTERGILPYAEVGKVAGFRIINYINSNKNPTAT 472 (760)
Q Consensus 424 ~Ga~~~i~~~~~~~~~--~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 472 (760)
+||.|+|++++..... ......+|++.|..++++.|+.|++++..++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999998876543 222367999999999999999999987665543
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.29 E-value=0.00068 Score=62.25 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=57.8
Q ss_pred ccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC------CC-CCcccceEEechhhHHHH
Q 036830 400 ASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW------PT-ERGILPYAEVGKVAGFRI 459 (760)
Q Consensus 400 ~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~------~~-~~~~~p~~~i~~~~g~~l 459 (760)
.+.|.+..+...+++|| |..+++++||.++|++|+..... .. ....+|++.|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 36798887777788888 88999999999999998876321 11 235699999999999999
Q ss_pred HHHHhcCCCCeE
Q 036830 460 INYINSNKNPTA 471 (760)
Q Consensus 460 ~~~~~~~~~~~~ 471 (760)
++++..+.+.++
T Consensus 109 ~~~l~~g~~v~~ 120 (122)
T cd04816 109 RRRLGAGETLEL 120 (122)
T ss_pred HHHHcCCCEEEE
Confidence 999988765444
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.04 E-value=0.0024 Score=59.72 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred ccccccccCCC--CCccccch-------------hhhhhhhcCceEEEEEcCCC-CC-C----CCCCcccceEEechhhH
Q 036830 398 SQASQCLYTTL--YPMDTRGR-------------KIAVAENVEAQGLIFINDDE-KI-W----PTERGILPYAEVGKVAG 456 (760)
Q Consensus 398 ~~~~~c~~~~~--~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~-~~-~----~~~~~~~p~~~i~~~~g 456 (760)
...+.|.+... ...++.|+ |..+++++||.++|+||+.. .. . ......+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34567988766 44455444 89999999999999999886 22 1 12225789999999999
Q ss_pred HHHHHHHhcCCCCeEE
Q 036830 457 FRIINYINSNKNPTAT 472 (760)
Q Consensus 457 ~~l~~~~~~~~~~~~~ 472 (760)
+.|+.++.++.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999988776654
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=96.95 E-value=0.0011 Score=58.39 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=49.3
Q ss_pred cccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCC------CCCCCcccceEEechhhHHHH
Q 036830 399 QASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKI------WPTERGILPYAEVGKVAGFRI 459 (760)
Q Consensus 399 ~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~------~~~~~~~~p~~~i~~~~g~~l 459 (760)
....|.+......+++|| |..+++++||.++|++|..... .......+|+++|+..+|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345577777888888888 8999999999999999921111 123348899999999999999
Q ss_pred HHHH
Q 036830 460 INYI 463 (760)
Q Consensus 460 ~~~~ 463 (760)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=96.81 E-value=0.0037 Score=57.34 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=53.6
Q ss_pred cccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCC-CCC----CC-CCcccceEEechhhHHHHHH
Q 036830 401 SQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDE-KIW----PT-ERGILPYAEVGKVAGFRIIN 461 (760)
Q Consensus 401 ~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~-~~~----~~-~~~~~p~~~i~~~~g~~l~~ 461 (760)
..|.+..+ +.+++|| |..+++++||.++|++|+.. ... .. ....+|++.|+.++|+.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35765444 2456776 89999999999999998873 221 11 23679999999999999999
Q ss_pred HHhcCCCCeEE
Q 036830 462 YINSNKNPTAT 472 (760)
Q Consensus 462 ~~~~~~~~~~~ 472 (760)
.++.+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988766553
No 54
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.78 E-value=0.0049 Score=55.90 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=53.8
Q ss_pred cccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC-----C-CCCcccceEEechhhHHHH
Q 036830 399 QASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW-----P-TERGILPYAEVGKVAGFRI 459 (760)
Q Consensus 399 ~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~-----~-~~~~~~p~~~i~~~~g~~l 459 (760)
....|.+..+...+++|| |..+++.+||.++|++|+..... . .....||+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 346799888877777777 99999999999999999876421 1 1336789999999999999
Q ss_pred HHHHhc
Q 036830 460 INYINS 465 (760)
Q Consensus 460 ~~~~~~ 465 (760)
++.+.+
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 998774
No 55
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.78 E-value=0.0055 Score=55.72 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=55.9
Q ss_pred ccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCC-C------C---CCCcccceEEechhhH
Q 036830 400 ASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKI-W------P---TERGILPYAEVGKVAG 456 (760)
Q Consensus 400 ~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~-~------~---~~~~~~p~~~i~~~~g 456 (760)
.+.|.+... ..+++|+ |..+++++||.++|++|+.... . . .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 456886433 4456666 8999999999999999876541 1 1 2236899999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 036830 457 FRIINYINSNKNPTATI 473 (760)
Q Consensus 457 ~~l~~~~~~~~~~~~~i 473 (760)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999887776554
No 56
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=96.77 E-value=0.0044 Score=56.49 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=56.2
Q ss_pred cccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC--C----CCCcccceEEechhhHHHH
Q 036830 399 QASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW--P----TERGILPYAEVGKVAGFRI 459 (760)
Q Consensus 399 ~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~--~----~~~~~~p~~~i~~~~g~~l 459 (760)
....|.+.... .+++|| |..+++++||.++|++|+..... . .....+|++.|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 44578887763 347777 78899999999999998876532 1 2225799999999999999
Q ss_pred HHHHhcCCCCeEE
Q 036830 460 INYINSNKNPTAT 472 (760)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (760)
+.|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999987765543
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.64 E-value=0.016 Score=53.61 Aligned_cols=72 Identities=18% Similarity=0.080 Sum_probs=53.0
Q ss_pred ccccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC----CCCCcccceEEechhhHHHHH
Q 036830 398 SQASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW----PTERGILPYAEVGKVAGFRII 460 (760)
Q Consensus 398 ~~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~ 460 (760)
...+.|.+...+..+++|| |..+++++||.++|+||+..... .+. ..++.+.+ ..+|+.|+
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~-~~~~~~~~-~~~G~~l~ 116 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDA-DSIIAAVT-PEDGEAWI 116 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCC-cceeeEEe-HHHHHHHH
Confidence 4456898766555567776 89999999999999998876433 122 34555555 99999999
Q ss_pred HHHhcCCCCeE
Q 036830 461 NYINSNKNPTA 471 (760)
Q Consensus 461 ~~~~~~~~~~~ 471 (760)
+.++.+...++
T Consensus 117 ~~l~~G~~vtv 127 (129)
T cd02124 117 DALAAGSNVTV 127 (129)
T ss_pred HHHhcCCeEEE
Confidence 99987765444
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=96.62 E-value=0.006 Score=56.02 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=56.0
Q ss_pred cccccccCC--CCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC----C----CCCcccceEEechhh
Q 036830 399 QASQCLYTT--LYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW----P----TERGILPYAEVGKVA 455 (760)
Q Consensus 399 ~~~~c~~~~--~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~----~----~~~~~~p~~~i~~~~ 455 (760)
....|.+.. +...+++|| |..+++++||.++|++++..... . .....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687766 666777777 78999999999999998876421 1 123579999999999
Q ss_pred HHHHHHHHhcCCCCeE
Q 036830 456 GFRIINYINSNKNPTA 471 (760)
Q Consensus 456 g~~l~~~~~~~~~~~~ 471 (760)
|+.|+.|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999987655443
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=96.56 E-value=0.0068 Score=55.90 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=53.6
Q ss_pred ccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCC------C------C--CCCcccceEEec
Q 036830 400 ASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKI------W------P--TERGILPYAEVG 452 (760)
Q Consensus 400 ~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~------~------~--~~~~~~p~~~i~ 452 (760)
.+.|.+... ..+++|| |..+++++||.++|++|+.... . . .....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 356876544 4456666 8999999999999999876542 1 1 123679999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 036830 453 KVAGFRIINYINSNKNPTA 471 (760)
Q Consensus 453 ~~~g~~l~~~~~~~~~~~~ 471 (760)
..+|+.|++.++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988765543
No 60
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.49 E-value=0.051 Score=47.90 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=62.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEEecCCCCceEEEEEEECCceEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFGKEASSGYNYGSITWSDDRHSVRMMFA 756 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~v~~P~~ 756 (760)
..+.+++|+|.|..+..|++.........++++|..-.+ .+|++.++.|+|.+.. ..+.+.+.|...-.+..+.+|+-
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~~g~~~~~l~i~~e~~~~~i~v~ 98 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-PLGDYEGSLVITTEGGSFEIPVK 98 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-CCceEEEEEEEEECCeEEEEEEE
Confidence 566788999999999999998655344567788877666 6789999999998533 34457898988776678899987
Q ss_pred EEE
Q 036830 757 VDV 759 (760)
Q Consensus 757 ~~~ 759 (760)
+.+
T Consensus 99 a~~ 101 (102)
T PF14874_consen 99 AEV 101 (102)
T ss_pred EEE
Confidence 764
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.34 E-value=0.011 Score=55.47 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=53.0
Q ss_pred ccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCCC-----CC---CCcccceEEechhhHHH
Q 036830 400 ASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKIW-----PT---ERGILPYAEVGKVAGFR 458 (760)
Q Consensus 400 ~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~-----~~---~~~~~p~~~i~~~~g~~ 458 (760)
.+.|.+... +++|+ |..+++++||.++|+||+..... .. ....||+++|+..+|+.
T Consensus 48 ~~gC~~~~~---~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPSTS---KLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCCc---ccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 467887653 45665 99999999999999998765321 11 13689999999999999
Q ss_pred HHHHHhcCCCCeE
Q 036830 459 IINYINSNKNPTA 471 (760)
Q Consensus 459 l~~~~~~~~~~~~ 471 (760)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998766543
No 62
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=96.15 E-value=0.018 Score=53.08 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=45.3
Q ss_pred hhhhhhhcCceEEEEEcCCCCCC-----C--------CCCcccceEEechhhHHHHHHHHhcCCCCeEE
Q 036830 417 KIAVAENVEAQGLIFINDDEKIW-----P--------TERGILPYAEVGKVAGFRIINYINSNKNPTAT 472 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~~-----~--------~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 472 (760)
|..+++++||.++|++|+..... + .....+|+++|+..+|+.|+..+.++...+++
T Consensus 58 K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 58 KAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred HHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999865431 0 11246999999999999999999988766543
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=95.90 E-value=0.046 Score=50.50 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=42.1
Q ss_pred hhhhhhhcCceEEEEEcCCCCCCC---------CCCcccceEEechhhHHHHHHHHhcCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEKIWP---------TERGILPYAEVGKVAGFRIINYINSNKN 468 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 468 (760)
|..++.++||.++|++|+...... .....+|++.|+.++++.|+..++.+..
T Consensus 62 k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 62 KYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred HHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 789999999999999987665421 1235799999999999999999987543
No 64
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=95.68 E-value=0.03 Score=50.82 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred cccccccCCCCCccccch-------------hhhhhhhcCceEEEEEcCCCCC-C-------CCCCcccceEEechhhHH
Q 036830 399 QASQCLYTTLYPMDTRGR-------------KIAVAENVEAQGLIFINDDEKI-W-------PTERGILPYAEVGKVAGF 457 (760)
Q Consensus 399 ~~~~c~~~~~~~~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~-~-------~~~~~~~p~~~i~~~~g~ 457 (760)
..+.|.+. +..+++|| |..+++++||.++|++|+.... . ......+|+++++.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34678766 44666666 8999999999999999876642 1 122358999999999999
Q ss_pred HHHHHHhc
Q 036830 458 RIINYINS 465 (760)
Q Consensus 458 ~l~~~~~~ 465 (760)
+|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99887654
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=95.65 E-value=0.034 Score=53.15 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=53.2
Q ss_pred ccccccCCCCC---ccccch-------------hhhhhhhcCceEEEEEcCCCCCC----C-C---CCcccceEEechhh
Q 036830 400 ASQCLYTTLYP---MDTRGR-------------KIAVAENVEAQGLIFINDDEKIW----P-T---ERGILPYAEVGKVA 455 (760)
Q Consensus 400 ~~~c~~~~~~~---~~~~Gk-------------k~~~~~~~Ga~~~i~~~~~~~~~----~-~---~~~~~p~~~i~~~~ 455 (760)
.++|.+....+ ..+.|+ |..+++++||.++|++|+..... . + ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45788766533 555555 99999999999999999875532 1 1 13689999999999
Q ss_pred HHHHHHHHhcCCC
Q 036830 456 GFRIINYINSNKN 468 (760)
Q Consensus 456 g~~l~~~~~~~~~ 468 (760)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 66
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.49 E-value=0.04 Score=51.48 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=40.2
Q ss_pred hhhhhhhcCceEEEEEcCC--CCCC----CC--CCcccceEEechhhHHHHHHHHhc
Q 036830 417 KIAVAENVEAQGLIFINDD--EKIW----PT--ERGILPYAEVGKVAGFRIINYINS 465 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~--~~~~----~~--~~~~~p~~~i~~~~g~~l~~~~~~ 465 (760)
|.++++++||.++|+||+. +... .+ ....+|++.|+..+|+.|+..+..
T Consensus 77 Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 77 KVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred HHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhcC
Confidence 7899999999999999997 4322 11 136899999999999999998754
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.15 E-value=0.1 Score=43.57 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=35.4
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPN-ATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
..+++++|+|.|..+ ...++++..|.|-.+...|..+.--++|++++++++|+.
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEEC
Confidence 778999999999755 458888999999998888887753378999888888887
No 68
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=89.69 E-value=7.5 Score=35.14 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=38.5
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
.-.+++++.|.+..+.+|++++..++|+.+......+++ ++|++..+.|.|..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEE
Confidence 445889999999999999999999889999655588888 68899888888888
No 69
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=88.29 E-value=7.8 Score=35.36 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=47.5
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCC----CC-cE-------------------EEEecceeEEeeCceEEEEEEEEEE-e
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAP----SG-LA-------------------VKVFPQKLTFVEGIIKLSFKASFFG-K 731 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~----~g-~~-------------------v~v~p~~~~~~~~~~~~~~~vt~~~-~ 731 (760)
+++++++|+|.++...+|.+++... .| +. +++ |..+++ ++++++.++++++. .
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcCC
Confidence 7889999999999999999987532 22 11 222 444666 68899998888876 3
Q ss_pred cCCCCceEEEEEEEC
Q 036830 732 EASSGYNYGSITWSD 746 (760)
Q Consensus 732 ~~~~~~~~G~~~~~~ 746 (760)
..-.+.+-|.|.++.
T Consensus 106 ~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 106 KAFDGIILGGIYFSE 120 (121)
T ss_pred CCcCCEEEeeEEEEe
Confidence 333566778787753
No 70
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.67 E-value=5.9 Score=43.83 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=53.3
Q ss_pred eEEEEEEEEecCCCCeE-EEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEE--ecCCCCceEEEEEEEC
Q 036830 677 IRTVKRTVTNVGSPNAT-YISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFG--KEASSGYNYGSITWSD 746 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~--~~~~~~~~~G~~~~~~ 746 (760)
..++...+.|.|+.+-| -++++..|.|-++.|+|..+---++++++++.+|++. .+.++.| +=+|+-+.
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ks 469 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAKS 469 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEee
Confidence 67788899999987755 7899999999999999987654478888888888887 4444544 45555544
No 71
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=78.52 E-value=6 Score=36.78 Aligned_cols=55 Identities=9% Similarity=-0.057 Sum_probs=42.4
Q ss_pred hhhhhhhcCceEEEEEcCCCC-------CC---CCCCcccceEEechhhHHHHHHHHhcCCCCeE
Q 036830 417 KIAVAENVEAQGLIFINDDEK-------IW---PTERGILPYAEVGKVAGFRIINYINSNKNPTA 471 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~-------~~---~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 471 (760)
....+.++||.++|++|.... +. ++....+|++.|+.+++..|...++.+...++
T Consensus 68 ~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 68 GAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred HHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEE
Confidence 468999999999999985422 11 12235699999999999999999988765544
No 72
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=77.97 E-value=3.9 Score=40.04 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=36.8
Q ss_pred hhhhhhhcCceEEEEEcCCCCC--------------------C-------CC---------CCcccceEEechhhHHHHH
Q 036830 417 KIAVAENVEAQGLIFINDDEKI--------------------W-------PT---------ERGILPYAEVGKVAGFRII 460 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~--------------------~-------~~---------~~~~~p~~~i~~~~g~~l~ 460 (760)
|+.+|+++||.++|+|++.... . .. ..-.||+.-|+..++..|+
T Consensus 71 Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL 150 (183)
T cd02128 71 KVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLL 150 (183)
T ss_pred HHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHH
Confidence 8999999999999999874110 0 00 0134888999999999999
Q ss_pred HHHhc
Q 036830 461 NYINS 465 (760)
Q Consensus 461 ~~~~~ 465 (760)
..+.-
T Consensus 151 ~~l~G 155 (183)
T cd02128 151 SKMGG 155 (183)
T ss_pred HHcCC
Confidence 98754
No 73
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=75.20 E-value=29 Score=31.38 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeC---CC----CcEEEEecceeEEeeCceEEEEEEEEEEec-CCCCceEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNA---PS----GLAVKVFPQKLTFVEGIIKLSFKASFFGKE-ASSGYNYGSITWS 745 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~---~~----g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~ 745 (760)
..+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|+++.+.| +.... +......=+|.+.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 345688999999988888887764 11 1257799999999 6899999999 66533 3344433445543
No 74
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=74.99 E-value=37 Score=31.70 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=52.6
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEEecCCCCceEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPN-ATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFGKEASSGYNYGSITWS 745 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~ 745 (760)
...+.+.+-|-.+.. ...++......++++--.|..+++ .+++.++++.+++.+....+..||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsStetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEeccCCEEEEEEEEe
Confidence 445666677766422 345666666778888888999998 67888999999999888899999999985
No 75
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.94 E-value=44 Score=37.25 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=51.0
Q ss_pred eEEEEEEEEecCCCCeEEEEEEe-CCCCcEEEEecceeEEe----eCceEEEEEEEEEE--ecCCCCceEEEEEEECC
Q 036830 677 IRTVKRTVTNVGSPNATYISMVN-APSGLAVKVFPQKLTFV----EGIIKLSFKASFFG--KEASSGYNYGSITWSDD 747 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~-~~~g~~v~v~p~~~~~~----~~~~~~~~~vt~~~--~~~~~~~~~G~~~~~~~ 747 (760)
+..|++++.|.|....+|..++. .|+|-.....-..+.++ ++||++.|+|.|.+ .+..+.| .=.|+-+.+
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y-nv~I~A~s~ 361 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY-NVTITASSS 361 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-eEEEEEecc
Confidence 56799999999999999999998 78887776554444433 68999999999988 3344444 333444443
No 76
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=72.27 E-value=2.9 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=19.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCC
Q 036830 148 ASDIVIGVIDTGIWPESPSFN 168 (760)
Q Consensus 148 G~Gv~VgVIDtGid~~Hp~f~ 168 (760)
|+||+|||+|||||+.-|-+.
T Consensus 80 GRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 80 GRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCceEEEEeecCCCCCCCCce
Confidence 999999999999999988775
No 77
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.85 E-value=22 Score=31.22 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=38.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
..+.+++|+|.++....|.+....|... .|.|..-.+ +++++..+.|++..
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQP 69 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-S
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEe
Confidence 5667789999999999999998877654 467998777 67999999998877
No 78
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=64.48 E-value=17 Score=40.49 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=46.3
Q ss_pred hhhhhhhcCceEEEEEcCCCCCC--------CCCCcccceEEechhhHHHHHHHHhcCCCCeEEEccC
Q 036830 417 KIAVAENVEAQGLIFINDDEKIW--------PTERGILPYAEVGKVAGFRIINYINSNKNPTATILPT 476 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~~--------~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 476 (760)
|...++.+||.++++.|+...-. ......||++++..++++.+..-...+.+.++.+..+
T Consensus 111 Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP 178 (541)
T KOG2442|consen 111 KAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP 178 (541)
T ss_pred hhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC
Confidence 89999999999999999843221 2335889999999999999998777666665554433
No 79
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.40 E-value=35 Score=38.45 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=44.9
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
.-..+..+.|.+..+.+|+++++..+|.++...+..+++ ++|++.++.|++..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEe
Confidence 456889999999999999999999989888765457777 67888888888877
No 80
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.83 E-value=1e+02 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=30.6
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEEe
Q 036830 677 IRTVKRTVTNVGSPN-ATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFGK 731 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 731 (760)
..+++.+|+|.|... ..+.+.+... |..+. +...-.+ ++|++.++++++...
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLD-GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEEC-Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 788999999999854 5577776543 22221 1111244 578888888887664
No 81
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=52.16 E-value=27 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.6
Q ss_pred hhhhhhhcCceEEEEEcCCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEK 437 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~ 437 (760)
|..++.++||.++|++++...
T Consensus 81 K~~~A~~~GA~gvIii~~~~~ 101 (142)
T cd04814 81 KYEEAARHGAAGVLIVHELAP 101 (142)
T ss_pred HHHHHHHCCCcEEEEEeCCCc
Confidence 788999999999999998653
No 82
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=49.98 E-value=33 Score=41.80 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=32.7
Q ss_pred eEEEEEEEEecCCCC--eEEEEEEeCCCCcEEEEecc-------eeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPN--ATYISMVNAPSGLAVKVFPQ-------KLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~--~~y~~~~~~~~g~~v~v~p~-------~~~~~~~~~~~~~~vt~~~ 730 (760)
..+++++|||+|+.+ ++-.+-+..|.+- +. .|. ++.+ ++||++++++++..
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~ 727 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDI 727 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecH
Confidence 688999999999844 4444445555321 11 221 1233 68999998888876
No 83
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=48.35 E-value=22 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.3
Q ss_pred hhhhhhhcCceEEEEEcCCCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEKI 438 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~ 438 (760)
|+.+++++||.++|+|++....
T Consensus 87 Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 87 KVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred HHHHHHHcCCEEEEEEeCchhc
Confidence 8999999999999999986543
No 84
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=48.30 E-value=18 Score=33.74 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.5
Q ss_pred hhhhhhhcCceEEEEEcCCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEK 437 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~ 437 (760)
|..++.++||.++|+++++..
T Consensus 77 K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 77 KARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred HHHHHHHCCCeEEEEEeCCcc
Confidence 789999999999999998654
No 85
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=43.59 E-value=61 Score=26.98 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=28.4
Q ss_pred EEEEecceeEEeeCceEEEEEEEEEEecCCCCceEEEEEEECCc
Q 036830 705 AVKVFPQKLTFVEGIIKLSFKASFFGKEASSGYNYGSITWSDDR 748 (760)
Q Consensus 705 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~ 748 (760)
.+++.|..+++ ..|++..|++++...... - ...++|++..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~--~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK--V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC--c-cceEEEEECC
Confidence 47788999988 578888999997652222 1 5678887653
No 86
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=43.02 E-value=17 Score=34.36 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred hhhhhhhcCceEEEEEcCCCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEKI 438 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~ 438 (760)
|+++|++.||.|+|+|.+....
T Consensus 56 Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 56 KLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred HHHHHHHCCCeEEEEecChhhc
Confidence 9999999999999999886544
No 87
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=42.40 E-value=27 Score=33.15 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.5
Q ss_pred hhhhhhhcCceEEEEEcCCCCC
Q 036830 417 KIAVAENVEAQGLIFINDDEKI 438 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~ 438 (760)
|..++.++||.++|++++....
T Consensus 81 K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 81 KATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred HHHHHHHCCCeEEEEEeCCccc
Confidence 7899999999999999987654
No 88
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.78 E-value=1.3e+02 Score=25.33 Aligned_cols=52 Identities=25% Similarity=0.160 Sum_probs=26.8
Q ss_pred EEEEEEEEecCCCCeE--------EEEEEeCCCCcEE---------EEecceeEEeeCceEEEEEEEEEE
Q 036830 678 RTVKRTVTNVGSPNAT--------YISMVNAPSGLAV---------KVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 678 ~t~~rtv~N~~~~~~~--------y~~~~~~~~g~~v---------~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
..++.+|+|.++.+.+ |-+.+....|-.| +---...++ ++||+..|+.+++.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 3577888898876544 4445554544444 222233345 68899998888865
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=41.73 E-value=65 Score=39.32 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=31.2
Q ss_pred eEEEEEEEEecCCCCeEEE--EEEeCCCCcEEEEec-------ceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYI--SMVNAPSGLAVKVFP-------QKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~--~~~~~~~g~~v~v~p-------~~~~~~~~~~~~~~~vt~~~ 730 (760)
..+++++|||+|+.+..-. +-+..|... +. .| .++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PG-VPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CC-CcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4779999999998554444 344444321 11 12 12233 68999998888865
No 90
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.46 E-value=2.6e+02 Score=27.39 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=38.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeC----CCCcEEEEecceeEEe--eCceEEEEEEEEEEecCCCCceEE
Q 036830 676 AIRTVKRTVTNVGSPNATYISMVNA----PSGLAVKVFPQKLTFV--EGIIKLSFKASFFGKEASSGYNYG 740 (760)
Q Consensus 676 ~~~t~~rtv~N~~~~~~~y~~~~~~----~~g~~v~v~p~~~~~~--~~~~~~~~~vt~~~~~~~~~~~~G 740 (760)
+..+++.++.|.|+. .-|.+++.. ++++++.=--.+.++. ++|+..+.++++++.+ .+.+.++
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~-~G~f~~~ 106 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK-SGYFNFT 106 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee-eEEEEcc
Confidence 478999999999975 567777765 2444441111111121 5788888888887633 4444444
No 91
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=48 Score=35.87 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=40.1
Q ss_pred hhhhhhhcCceEEEEEcCCCCCC------CCCCcccceEEechhhHHHHHHHHhc
Q 036830 417 KIAVAENVEAQGLIFINDDEKIW------PTERGILPYAEVGKVAGFRIINYINS 465 (760)
Q Consensus 417 k~~~~~~~Ga~~~i~~~~~~~~~------~~~~~~~p~~~i~~~~g~~l~~~~~~ 465 (760)
|+.+++++|..++|+||+...+. ......++..+++...|+.|..|...
T Consensus 95 Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~ 149 (348)
T KOG4628|consen 95 KVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGR 149 (348)
T ss_pred HHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcc
Confidence 89999999999999999876652 12347789999999999999987543
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=36.96 E-value=1.2e+02 Score=22.18 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=24.1
Q ss_pred EEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEE
Q 036830 682 RTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASF 728 (760)
Q Consensus 682 rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~ 728 (760)
.+++|.|+.+..-.-....-.=..+ +.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~--~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTA--EYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEe--eCCcceE-CCCCEEEEEEEC
Confidence 4678999876543322222222233 3333334 678988887764
No 93
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=36.00 E-value=1.6e+02 Score=22.43 Aligned_cols=37 Identities=32% Similarity=0.263 Sum_probs=24.0
Q ss_pred eEEEEEEEEecCCCCeE-EEEEEeCCCCcEEEEecceeEE
Q 036830 677 IRTVKRTVTNVGSPNAT-YISMVNAPSGLAVKVFPQKLTF 715 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~-y~~~~~~~~g~~v~v~p~~~~~ 715 (760)
..+++++++|.|+...+ ..+.=..|.|+.+. |.++++
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v--~~S~~~ 50 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVTDILPSGTTFV--SNSVTV 50 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEEEcCCCCCEEE--eCcEEE
Confidence 78999999999986654 33333446666542 444443
No 94
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.70 E-value=1.4e+02 Score=32.51 Aligned_cols=54 Identities=28% Similarity=0.254 Sum_probs=38.8
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeC-CCCcEEEEecceeEEe-eCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNA-PSGLAVKVFPQKLTFV-EGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~-~~g~~v~v~p~~~~~~-~~~~~~~~~vt~~~ 730 (760)
...+...++|.+.+..+-.+.++. |.|++++|.|+..++. ...++++|.|+++.
T Consensus 91 dFkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei 146 (403)
T COG4856 91 DFKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEI 146 (403)
T ss_pred CeEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEE
Confidence 344555688887766666666654 8999999999998875 23355677777776
No 95
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=34.30 E-value=2.5e+02 Score=23.85 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=34.1
Q ss_pred CcEEEeecccCceeEEEEEEEEecCCCCeEEEEEEeC-----CCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 664 PSISISKLARQGAIRTVKRTVTNVGSPNATYISMVNA-----PSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 664 ps~~~~~~~~~~~~~t~~rtv~N~~~~~~~y~~~~~~-----~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
+++++.+-.+ . ++++|.-.|+.....++.+.. -+|.+..-...+|+|.+....++++|.+..
T Consensus 9 ~~~~V~E~~g---~--~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~d 75 (90)
T smart00237 9 PVYTVSESDG---E--VEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIID 75 (90)
T ss_pred CeEEEEECCe---E--EEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeC
Confidence 4566666544 3 344444445444455554432 255666666888888544344666666543
No 96
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.89 E-value=48 Score=23.81 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 036830 555 AAFIKSVRRKWTYSMIKSALMTTA 578 (760)
Q Consensus 555 aALl~q~~P~ls~~~ik~~L~~TA 578 (760)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997654
No 97
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=31.33 E-value=1.1e+02 Score=24.87 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEEEEecCCCCeE-EEEEEeCCCCcEE
Q 036830 677 IRTVKRTVTNVGSPNAT-YISMVNAPSGLAV 706 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~-y~~~~~~~~g~~v 706 (760)
..+++++|+|.|+.... ..+.=..|.|+.+
T Consensus 42 ~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred EEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 78899999999986633 4444344666654
No 98
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=29.60 E-value=3.8e+02 Score=23.29 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=23.8
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEeCCCCcEEE
Q 036830 677 IRTVKRTVTNVGSPN-ATYISMVNAPSGLAVK 707 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~-~~y~~~~~~~~g~~v~ 707 (760)
-....++|+|.++.+ ..|++++..|.+.++.
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 455678999999877 4699999888776653
No 99
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=29.39 E-value=3.8e+02 Score=23.31 Aligned_cols=52 Identities=21% Similarity=0.044 Sum_probs=33.5
Q ss_pred eEEEEEEEEecCCCC-eEEEEE-----EeCCCCcE---EEEecceeEEeeCceEEEEEEEEEE
Q 036830 677 IRTVKRTVTNVGSPN-ATYISM-----VNAPSGLA---VKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~-~~y~~~-----~~~~~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
..++.++++|..+.. .+-++. +.- .|+. .......+++ +++++.++++++..
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEc
Confidence 788999999999877 553332 233 3663 4555666666 67899999999876
No 100
>PRK13203 ureB urease subunit beta; Reviewed
Probab=27.94 E-value=1.4e+02 Score=26.22 Aligned_cols=17 Identities=35% Similarity=0.327 Sum_probs=13.7
Q ss_pred eEEEEEEEEecCCCCeE
Q 036830 677 IRTVKRTVTNVGSPNAT 693 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~ 693 (760)
..+++++|+|+|+.+..
T Consensus 19 r~~~~l~V~NtGDRPIQ 35 (102)
T PRK13203 19 RETVTLTVANTGDRPIQ 35 (102)
T ss_pred CCEEEEEEEeCCCCceE
Confidence 55688999999998754
No 101
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.43 E-value=1.5e+02 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.1
Q ss_pred EEEEEEEEecCCCCeE
Q 036830 678 RTVKRTVTNVGSPNAT 693 (760)
Q Consensus 678 ~t~~rtv~N~~~~~~~ 693 (760)
.+++++|+|.|+.+..
T Consensus 21 ~~~~l~V~NtGDRPIQ 36 (104)
T PRK13202 21 SRLQMRIINAGDRPVQ 36 (104)
T ss_pred ceEEEEEEeCCCCceE
Confidence 5688999999998754
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=27.16 E-value=1.6e+02 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=13.6
Q ss_pred eEEEEEEEEecCCCCeE
Q 036830 677 IRTVKRTVTNVGSPNAT 693 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~ 693 (760)
..+++++|+|.|+.+..
T Consensus 19 r~~~~l~V~NtGDRpIQ 35 (101)
T cd00407 19 REAVTLKVKNTGDRPIQ 35 (101)
T ss_pred CCEEEEEEEeCCCcceE
Confidence 55688999999997754
No 103
>PRK15019 CsdA-binding activator; Provisional
Probab=26.79 E-value=60 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.040 Sum_probs=28.4
Q ss_pred ceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHH
Q 036830 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKS 572 (760)
Q Consensus 538 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~ 572 (760)
-..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455665 67999999999999999999999876
No 104
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.64 E-value=1.6e+02 Score=25.75 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.6
Q ss_pred eEEEEEEEEecCCCCeE
Q 036830 677 IRTVKRTVTNVGSPNAT 693 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~ 693 (760)
..+.+++|+|.|+.+..
T Consensus 19 r~~~~l~V~NtGDRPIQ 35 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQ 35 (101)
T ss_pred CcEEEEEEEeCCCcceE
Confidence 45688999999998754
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.54 E-value=67 Score=30.05 Aligned_cols=35 Identities=17% Similarity=0.001 Sum_probs=29.0
Q ss_pred ceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHH
Q 036830 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSA 573 (760)
Q Consensus 538 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 573 (760)
-..+.|.| =|+.|-|.+||+.+.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 106
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=24.31 E-value=5.7e+02 Score=31.77 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=35.8
Q ss_pred CCCcEEEeecccCceeEEEEEEEEecC-CCCeEEEEEEeC-----CCCcEEEEecceeEEeeCceE-EEEEEEEEE
Q 036830 662 NYPSISISKLARQGAIRTVKRTVTNVG-SPNATYISMVNA-----PSGLAVKVFPQKLTFVEGIIK-LSFKASFFG 730 (760)
Q Consensus 662 n~ps~~~~~~~~~~~~~t~~rtv~N~~-~~~~~y~~~~~~-----~~g~~v~v~p~~~~~~~~~~~-~~~~vt~~~ 730 (760)
.-++..+.+-.+ . ++++|+=.| +...+.++.+.. -+|.+..-...+|+|. +||+ ++++|++-.
T Consensus 405 e~~~Y~V~En~G---t--V~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~-PGEt~KtItV~IID 474 (928)
T TIGR00845 405 EPGHYTCLENCG---T--VALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFK-PGETQKEFRIGIID 474 (928)
T ss_pred cCCeEEEeecCc---E--EEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEEC-CCceEEEEEEEEcc
Confidence 334556665444 3 444444444 444445555433 3567777778899995 4555 666666654
No 107
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=24.24 E-value=65 Score=24.84 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=22.0
Q ss_pred cceeeecccchhhhHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 036830 537 TYALRSGTSMACPHVTGAA------AFIKSVRRKWTYSMIKSALM 575 (760)
Q Consensus 537 ~y~~~sGTSmAaP~VAG~a------ALl~q~~P~ls~~~ik~~L~ 575 (760)
+--.+.||=+..=.|.... .-+.+.||.++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3445556666555444432 23466799999999999984
No 108
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=24.14 E-value=35 Score=15.57 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=4.0
Q ss_pred cccCCC
Q 036830 490 YFSSRG 495 (760)
Q Consensus 490 ~fSs~G 495 (760)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467776
No 109
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=23.41 E-value=1.7e+02 Score=25.54 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=12.2
Q ss_pred eEEEEEEEEecCCCCeE
Q 036830 677 IRTVKRTVTNVGSPNAT 693 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~ 693 (760)
..+++++|+|.||.+..
T Consensus 18 r~~~~l~V~N~GDRPIQ 34 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQ 34 (100)
T ss_dssp SEEEEEEEEE-SSS-EE
T ss_pred CcEEEEEEEeCCCcceE
Confidence 56788999999998744
No 110
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=23.37 E-value=4.5e+02 Score=22.11 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=34.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCCcEEEEecceeEEeeCceEEEEEEEEEEecCCCCceE
Q 036830 677 IRTVKRTVTNVGSPNATYISMVNAPSGLAVKVFPQKLTFVEGIIKLSFKASFFGKEASSGYNY 739 (760)
Q Consensus 677 ~~t~~rtv~N~~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 739 (760)
.-.+.++++|.|....++++.-..-. .-.|.++++ ++|++++..+.+ ....+||.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l---~~s~gwYD 73 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPL---AASGGWYD 73 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEee---cCCCCcEE
Confidence 34688999999988888877753211 112445555 567776655554 34556665
No 111
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.75 E-value=80 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=28.4
Q ss_pred ceeeecccchhhhHHHHHHHHHHhCCCCCHHHHHH
Q 036830 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKS 572 (760)
Q Consensus 538 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~ 572 (760)
-..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 68999999999999999999999864
No 112
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.72 E-value=62 Score=22.08 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.6
Q ss_pred chhhhHHHHHHHH
Q 036830 546 MACPHVTGAAAFI 558 (760)
Q Consensus 546 mAaP~VAG~aALl 558 (760)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 113
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=21.94 E-value=3.3e+02 Score=23.22 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=33.2
Q ss_pred cCCCcEEEeecccCceeEEEEEEEEecCC--CCeEEEEEEe---CCCCcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 661 INYPSISISKLARQGAIRTVKRTVTNVGS--PNATYISMVN---APSGLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 661 ln~ps~~~~~~~~~~~~~t~~rtv~N~~~--~~~~y~~~~~---~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
+.-+++++.+-.+ ...+.+++++ +. ...+...... +-.|.+....+..++|.+....+++.|++-.
T Consensus 15 f~~~~~~v~E~~~---~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~d 85 (100)
T PF03160_consen 15 FSSPSYTVSEGDG---TVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIID 85 (100)
T ss_dssp ESSSEEEEETTSS---EEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB--
T ss_pred EeCCEEEEEeCCC---EEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeC
Confidence 4446666766544 5555555555 32 3333333221 2246777778888999654444676666644
No 114
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.89 E-value=1.1e+03 Score=25.94 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=29.1
Q ss_pred CceeEEEEEEEEecCCCCeE---EE---EEEeCCC--------------CcEEEEecceeEEeeCceEEEEEEEEEE
Q 036830 674 QGAIRTVKRTVTNVGSPNAT---YI---SMVNAPS--------------GLAVKVFPQKLTFVEGIIKLSFKASFFG 730 (760)
Q Consensus 674 ~~~~~t~~rtv~N~~~~~~~---y~---~~~~~~~--------------g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 730 (760)
.+++.+++++|||.|+.+.. |+ +....|. .--++|+|+.-- .+||+++++|+++.
T Consensus 261 pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI--~PGETrtl~V~a~d 335 (381)
T PF04744_consen 261 PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPI--APGETRTLTVEAQD 335 (381)
T ss_dssp SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B---TT-EEEEEEEEE-
T ss_pred CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCc--CCCceEEEEEEeeh
Confidence 34588899999999987643 22 1111121 001345555432 58999999998866
No 115
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.13 E-value=2.7e+02 Score=29.87 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=51.2
Q ss_pred CCCCeEEEEEeccCCCCCHHHHHHHHHHHHhCC----CcEEEecccCCCC-CCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 036830 253 SPFSRIASYKACKEGGCSGAAILQAIDDAIHDG----VDIISISIGLSNS-EADYMNDPIAIGALHAQQRGVVVICSAGN 327 (760)
Q Consensus 253 AP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g----~dVIN~SlG~~~~-~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 327 (760)
.|.+++..|.+.=.+-.....|++||+.+.+.+ +|||-+-=|++.- ....|++ ...+....+.-+.|+.|-|=
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~--e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFND--EEVARAIAASPIPVISAIGH 116 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccCh--HHHHHHHHhCCCCEEEecCC
Confidence 466777766654443367889999999998765 8999999988851 1112222 12334555778999999997
Q ss_pred CC
Q 036830 328 DG 329 (760)
Q Consensus 328 ~G 329 (760)
+-
T Consensus 117 e~ 118 (319)
T PF02601_consen 117 ET 118 (319)
T ss_pred CC
Confidence 64
No 116
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.77 E-value=97 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.011 Sum_probs=26.9
Q ss_pred eeeecccchhhhHHHHHHHHHHhCCCCCHHHHHHH
Q 036830 539 ALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIKSA 573 (760)
Q Consensus 539 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 573 (760)
..+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556665 67999999999999999999998654
No 117
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=89 Score=29.33 Aligned_cols=33 Identities=21% Similarity=-0.001 Sum_probs=26.1
Q ss_pred ceeeecccchhhhHHHHHHHHHHhCCCCCHHHHH
Q 036830 538 YALRSGTSMACPHVTGAAAFIKSVRRKWTYSMIK 571 (760)
Q Consensus 538 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik 571 (760)
-..+.|=|= |+.|.|.+|++.+.+-..||++|.
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334445443 689999999999999999999975
Done!