BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036833
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189
+G +C+VCL+E ++ E R LP+C H FH C+D WL SHS+CPLCR T++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
E + C VC+ +F+ + LR+LP CNH FH C+D WLK++ +CP+CRA
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C++CLS +E E +R LP C H FH C+D WL ++ CP+CR I
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
G +C VC ++ ES+R LP CNH FH CI WL+ H SCP+CR ++
Sbjct: 15 GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAP 199
C+VCL +F+ + L + P C HAFH C+ WL+ CPLC ++ AQ S P
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL--AQLSGP 71
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
C +C SE+ + + LP C+H FH PC+ WL+ +CP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
C C +E ++ + + + +CNH+FH C+ W+K ++ CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 162 CNHAFHLPCIDTWLKSHSSCPL 183
CNHAFH CI WLK+ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQA 196
L + +C +C+ + L+ C H+F CID W H +CP+CR + A ++
Sbjct: 12 LTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG--ANES 64
Query: 197 SAP 199
S P
Sbjct: 65 SGP 67
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 134 GDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
D L C +C F E +L C H+F CI+ W+K CP+CR I S
Sbjct: 47 NDVLENELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 134 GDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
D L C +C F E +L C H+F CI+ W+K CP+CR I S
Sbjct: 47 NDVLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 134 GDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
D L C +C F E +L C H+F CI+ W+K CP+CR I S
Sbjct: 58 NDVLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLC 184
V +C +CL + + + C H H C + LK CPLC
Sbjct: 3 VSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLC 184
S C +CL + + + C H H C + LK CPLC
Sbjct: 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C +CL + + S+ L C HAF CI W++ + +CPLC+ +
Sbjct: 8 CPICLEDPSNY-SMAL--PCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 135 DGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-KSHSSCPLCRATI 188
+ + E C +C + ++ RL P C+ CI WL + + CP CRA +
Sbjct: 17 ESIAEVFRCFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 134 GDGLVEGSDCSVCL---SEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
G G V C +C+ SE ++ L + +C H F C+ LK+ ++CP CR I
Sbjct: 4 GSGTV---SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 134 GDGLVEGSDCSVCL---SEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
G G V C +C+ SE ++ L + +C H F C+ LK+ ++CP CR I
Sbjct: 69 GSGTV---SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 143 CSVCL---SEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C +C+ SE ++ L + +C H F C+ LK+ ++CP CR I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 143 CSVCL---SEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C +C+ SE ++ L + +C H F C+ LK+ ++CP CR I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 143 CSVCL---SEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C +C+ SE ++ L + +C H F C+ LK+ ++CP CR I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 135 DGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH---SSCPLC 184
D L E +C +C+ F E + L C H C++ L S CP C
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 124 KSITVCKYKKGD--GLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS- 180
KS CK+ K D L C +C Q+ + + +C+ AFH+ C+D L S S
Sbjct: 172 KSGPSCKHCKDDVNRLCRVCACHLCGGR-QDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 230
Query: 181 ----CPLCR 185
CP CR
Sbjct: 231 DEWYCPECR 239
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
C +C F+ ++P+C+H + CI +L + CP C T+
Sbjct: 25 CGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 124 KSITVCKYKKGD--GLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS- 180
KS CK+ K D L C +C Q+ + + +C+ AFH+ C+D L S S
Sbjct: 156 KSGPSCKHCKDDVNRLCRVCACHLCGGR-QDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 214
Query: 181 ----CPLCR 185
CP CR
Sbjct: 215 DEWYCPECR 223
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL----KSHSSCPLCR 185
C VC + E + L L +CN AFHL C+ L CP C+
Sbjct: 3 CKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL----KSHSSCPLCR 185
+E CS C + + +++ C+ FH+ C D L K C +CR
Sbjct: 59 IECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL----KSHSSCPLCR 185
+E CS C + + +++ C+ FH+ C D L K C +CR
Sbjct: 57 IECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 108
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS----CPLCRATII 189
CSVC Q L + C+ +HL C+D LK+ CP C+ ++
Sbjct: 8 CSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 124 KSITVCKYKKGD--GLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS- 180
KS CK+ K D L C +C Q+ + + +C+ AFH+ C+D L S S
Sbjct: 2 KSGPSCKHCKDDVNRLCRVCACHLCGGR-QDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 60
Query: 181 ----CPLCR 185
CP CR
Sbjct: 61 DEWYCPECR 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,188,913
Number of Sequences: 62578
Number of extensions: 400672
Number of successful extensions: 877
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 51
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)