Query 036833
Match_columns 352
No_of_seqs 390 out of 1909
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 7.1E-16 2.4E-20 122.4 6.4 77 113-190 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 5.6E-16 1.9E-20 118.2 3.5 68 123-191 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.1E-14 1E-18 101.7 3.7 51 139-189 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 7E-14 2.4E-18 106.0 5.9 54 138-192 13-66 (74)
5 2ect_A Ring finger protein 126 99.4 1.2E-13 4E-18 105.8 5.6 55 138-193 13-67 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.3E-13 4.6E-18 103.0 5.7 52 139-191 13-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.3 2.7E-13 9.4E-18 105.2 2.3 52 139-190 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.3 7.4E-13 2.5E-17 94.3 4.2 50 139-189 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.3 6E-13 2E-17 109.1 4.0 52 140-192 25-96 (114)
10 3dpl_R Ring-box protein 1; ubi 99.3 1.6E-12 5.4E-17 106.4 4.1 50 139-189 36-100 (106)
11 2ea6_A Ring finger protein 4; 99.3 2.5E-12 8.7E-17 95.4 4.0 51 138-189 13-67 (69)
12 3ng2_A RNF4, snurf, ring finge 99.3 2.5E-12 8.6E-17 96.2 3.9 52 139-191 9-64 (71)
13 2xeu_A Ring finger protein 4; 99.2 3.7E-12 1.3E-16 93.1 3.2 51 140-191 3-57 (64)
14 2d8s_A Cellular modulator of i 99.2 9.5E-12 3.2E-16 96.7 5.2 52 139-192 14-72 (80)
15 2ecn_A Ring finger protein 141 99.2 4.9E-12 1.7E-16 94.7 3.2 49 138-191 13-61 (70)
16 2d8t_A Dactylidin, ring finger 99.2 5E-12 1.7E-16 95.2 2.5 50 139-192 14-63 (71)
17 2djb_A Polycomb group ring fin 99.2 2.8E-11 9.5E-16 91.3 6.1 53 137-192 12-64 (72)
18 1chc_A Equine herpes virus-1 r 99.2 1.4E-11 4.7E-16 91.6 3.5 49 139-190 4-52 (68)
19 4a0k_B E3 ubiquitin-protein li 99.2 3.7E-12 1.2E-16 106.0 0.2 51 139-190 47-112 (117)
20 2ct2_A Tripartite motif protei 99.1 3.8E-11 1.3E-15 93.3 5.5 54 137-191 12-69 (88)
21 2ct0_A Non-SMC element 1 homol 99.1 4.1E-11 1.4E-15 91.7 5.2 50 139-191 14-65 (74)
22 2csy_A Zinc finger protein 183 99.1 7E-11 2.4E-15 91.0 4.7 47 139-189 14-60 (81)
23 2ysl_A Tripartite motif-contai 99.1 9.1E-11 3.1E-15 88.2 4.9 50 138-191 18-70 (73)
24 4ayc_A E3 ubiquitin-protein li 99.1 5.3E-11 1.8E-15 101.1 3.2 47 140-190 53-99 (138)
25 2ecy_A TNF receptor-associated 99.1 1.1E-10 3.6E-15 86.5 4.3 49 139-191 14-63 (66)
26 2yur_A Retinoblastoma-binding 99.0 1.3E-10 4.6E-15 88.1 4.8 50 138-190 13-64 (74)
27 2ecw_A Tripartite motif-contai 99.0 4.2E-10 1.4E-14 86.4 5.2 49 138-190 17-71 (85)
28 3lrq_A E3 ubiquitin-protein li 99.0 2.3E-10 7.8E-15 92.0 3.7 49 139-190 21-70 (100)
29 2ecv_A Tripartite motif-contai 99.0 4.1E-10 1.4E-14 86.5 5.0 50 138-191 17-72 (85)
30 4ap4_A E3 ubiquitin ligase RNF 99.0 2.2E-10 7.4E-15 95.2 3.3 52 139-191 6-61 (133)
31 1t1h_A Gspef-atpub14, armadill 99.0 4.7E-10 1.6E-14 85.5 4.9 49 138-190 6-55 (78)
32 2ysj_A Tripartite motif-contai 98.9 6.6E-10 2.3E-14 81.3 4.7 44 137-184 17-63 (63)
33 2y43_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 89.6 3.8 48 140-190 22-69 (99)
34 2egp_A Tripartite motif-contai 98.9 1.7E-10 6E-15 87.8 1.3 49 138-190 10-65 (79)
35 1g25_A CDK-activating kinase a 98.9 6.6E-10 2.3E-14 81.9 3.9 52 140-192 3-57 (65)
36 2ecj_A Tripartite motif-contai 98.9 8.4E-10 2.9E-14 79.0 3.8 43 138-184 13-58 (58)
37 2ckl_A Polycomb group ring fin 98.9 6.8E-10 2.3E-14 90.1 3.7 49 139-190 14-62 (108)
38 4ap4_A E3 ubiquitin ligase RNF 98.9 5.8E-10 2E-14 92.5 3.2 52 139-191 71-126 (133)
39 3fl2_A E3 ubiquitin-protein li 98.9 8.8E-10 3E-14 91.6 3.9 47 140-190 52-99 (124)
40 2ckl_B Ubiquitin ligase protei 98.8 1.2E-09 4.1E-14 95.2 3.9 48 140-190 54-102 (165)
41 3ztg_A E3 ubiquitin-protein li 98.8 1.7E-09 5.8E-14 85.0 4.2 50 137-189 10-61 (92)
42 1jm7_A BRCA1, breast cancer ty 98.8 1.8E-09 6.2E-14 87.6 4.1 48 140-191 21-71 (112)
43 1e4u_A Transcriptional repress 98.8 8.7E-09 3E-13 79.4 6.1 55 138-193 9-65 (78)
44 3hct_A TNF receptor-associated 98.8 2.9E-09 9.9E-14 87.8 3.6 50 137-190 15-65 (118)
45 1z6u_A NP95-like ring finger p 98.8 3.8E-09 1.3E-13 91.2 4.1 48 140-191 78-126 (150)
46 2vje_A E3 ubiquitin-protein li 98.8 2.8E-09 9.7E-14 78.9 2.7 47 139-189 7-56 (64)
47 3l11_A E3 ubiquitin-protein li 98.7 1.6E-09 5.5E-14 88.8 0.7 47 140-190 15-62 (115)
48 1rmd_A RAG1; V(D)J recombinati 98.7 5.8E-09 2E-13 85.5 3.9 48 140-191 23-71 (116)
49 2vje_B MDM4 protein; proto-onc 98.7 7.5E-09 2.6E-13 76.3 2.6 49 139-189 6-55 (63)
50 2y1n_A E3 ubiquitin-protein li 98.7 1E-08 3.6E-13 101.0 4.2 48 140-191 332-380 (389)
51 2kr4_A Ubiquitin conjugation f 98.6 2.1E-08 7.3E-13 78.3 4.5 48 139-190 13-60 (85)
52 1bor_A Transcription factor PM 98.6 9.4E-09 3.2E-13 73.9 2.1 46 139-191 5-50 (56)
53 2kre_A Ubiquitin conjugation f 98.6 3.3E-08 1.1E-12 79.7 4.3 48 139-190 28-75 (100)
54 3knv_A TNF receptor-associated 98.6 1.7E-08 5.8E-13 86.3 2.3 47 139-189 30-77 (141)
55 1wgm_A Ubiquitin conjugation f 98.6 4.7E-08 1.6E-12 78.5 4.8 48 139-190 21-69 (98)
56 4ic3_A E3 ubiquitin-protein li 98.6 1.6E-08 5.3E-13 76.8 1.7 43 140-190 24-67 (74)
57 1jm7_B BARD1, BRCA1-associated 98.6 1.4E-08 4.9E-13 83.5 1.5 44 140-189 22-66 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.1E-08 7.2E-13 96.9 2.5 53 138-190 306-373 (381)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.6E-07 5.6E-12 68.7 3.8 48 139-189 5-58 (60)
60 3hcs_A TNF receptor-associated 98.4 1.3E-07 4.4E-12 82.5 3.5 50 137-190 15-65 (170)
61 2ecg_A Baculoviral IAP repeat- 98.4 1.3E-07 4.3E-12 71.8 2.9 43 140-190 25-68 (75)
62 2yu4_A E3 SUMO-protein ligase 98.4 1.4E-07 5E-12 74.8 3.3 47 138-187 5-59 (94)
63 2ea5_A Cell growth regulator w 98.4 2E-07 6.8E-12 69.8 3.8 44 139-190 14-58 (68)
64 2c2l_A CHIP, carboxy terminus 98.3 2.1E-07 7.2E-12 86.3 3.7 48 139-190 207-255 (281)
65 1wim_A KIAA0161 protein; ring 98.3 2.5E-07 8.5E-12 73.1 3.1 48 139-187 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.2 2.3E-07 7.8E-12 71.4 1.3 43 140-190 18-61 (79)
67 2f42_A STIP1 homology and U-bo 98.2 1.1E-06 3.7E-11 78.1 4.2 49 138-190 104-153 (179)
68 3t6p_A Baculoviral IAP repeat- 98.0 8.7E-07 3E-11 86.3 0.9 43 140-190 295-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.0 2.8E-06 9.4E-11 62.2 2.4 48 141-191 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 97.9 4.5E-06 1.5E-10 78.0 3.1 48 140-190 181-232 (267)
71 3nw0_A Non-structural maintena 97.8 1.7E-05 5.8E-10 73.3 4.6 49 140-191 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.7 1.8E-05 6.3E-10 63.3 3.4 47 142-191 3-50 (101)
73 2ko5_A Ring finger protein Z; 92.9 0.13 4.4E-06 40.5 4.8 50 137-192 25-75 (99)
74 2lri_C Autoimmune regulator; Z 91.9 0.11 3.7E-06 38.3 3.1 46 139-188 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.3 0.17 5.7E-06 39.5 2.9 34 140-174 3-36 (101)
76 2klu_A T-cell surface glycopro 83.8 1.4 4.8E-05 32.3 4.3 32 57-89 7-39 (70)
77 1we9_A PHD finger family prote 82.2 0.31 1E-05 35.1 0.3 49 139-187 5-58 (64)
78 2jwa_A Receptor tyrosine-prote 81.3 3.6 0.00012 27.8 5.3 12 57-68 11-22 (44)
79 1wil_A KIAA1045 protein; ring 80.8 1.8 6.1E-05 33.4 4.2 34 139-174 14-47 (89)
80 2l5u_A Chromodomain-helicase-D 79.2 1.1 3.7E-05 32.1 2.4 45 139-187 10-58 (61)
81 3lqh_A Histone-lysine N-methyl 77.4 0.79 2.7E-05 40.3 1.4 48 140-187 2-63 (183)
82 1wev_A Riken cDNA 1110020M19; 77.3 0.55 1.9E-05 36.3 0.4 55 140-194 16-79 (88)
83 2l2t_A Receptor tyrosine-prote 77.1 5.1 0.00017 27.0 5.1 9 58-66 10-18 (44)
84 2k16_A Transcription initiatio 76.9 0.69 2.4E-05 34.3 0.8 50 139-189 17-70 (75)
85 1f62_A Transcription factor WS 75.7 1.1 3.8E-05 30.6 1.6 44 142-186 2-49 (51)
86 3u5n_A E3 ubiquitin-protein li 75.1 0.6 2.1E-05 41.5 0.1 46 139-188 6-55 (207)
87 3o36_A Transcription intermedi 73.4 0.66 2.2E-05 40.4 -0.1 45 140-188 4-52 (184)
88 1mm2_A MI2-beta; PHD, zinc fin 72.9 0.86 2.9E-05 32.6 0.4 45 139-187 8-56 (61)
89 2ks1_B Epidermal growth factor 72.6 5.6 0.00019 26.8 4.4 9 66-74 20-28 (44)
90 2e6r_A Jumonji/ARID domain-con 67.6 0.79 2.7E-05 35.7 -0.9 48 139-187 15-66 (92)
91 2yql_A PHD finger protein 21A; 67.2 0.81 2.8E-05 32.1 -0.8 44 139-186 8-55 (56)
92 2jwa_A Receptor tyrosine-prote 65.1 11 0.00038 25.4 4.6 31 58-89 9-39 (44)
93 2xb1_A Pygopus homolog 2, B-ce 65.0 0.94 3.2E-05 36.1 -0.9 48 141-188 4-62 (105)
94 3asl_A E3 ubiquitin-protein li 64.9 1.3 4.4E-05 32.7 -0.1 44 142-186 20-68 (70)
95 2lbm_A Transcriptional regulat 64.5 6.3 0.00022 33.1 4.1 44 139-186 62-116 (142)
96 2e6s_A E3 ubiquitin-protein li 64.4 1.1 3.8E-05 33.7 -0.5 44 142-186 28-76 (77)
97 2puy_A PHD finger protein 21A; 63.8 0.98 3.4E-05 32.1 -0.9 46 140-189 5-54 (60)
98 2ri7_A Nucleosome-remodeling f 63.1 1.7 5.9E-05 37.2 0.3 47 140-187 8-59 (174)
99 3v43_A Histone acetyltransfera 62.3 1.8 6.1E-05 34.7 0.3 45 142-186 63-111 (112)
100 2ysm_A Myeloid/lymphoid or mix 61.9 2.4 8.1E-05 33.7 1.0 37 139-176 6-42 (111)
101 1xwh_A Autoimmune regulator; P 61.6 2 6.8E-05 31.1 0.4 45 139-187 7-55 (66)
102 2l2t_A Receptor tyrosine-prote 61.3 14 0.00049 24.8 4.6 31 58-88 7-37 (44)
103 2l8s_A Integrin alpha-1; trans 61.1 16 0.00054 25.6 4.9 12 64-75 13-24 (54)
104 1wep_A PHF8; structural genomi 60.8 5.7 0.00019 29.6 2.9 48 140-188 12-64 (79)
105 2lv9_A Histone-lysine N-methyl 59.2 2.7 9.2E-05 32.9 0.8 45 140-186 28-75 (98)
106 3ql9_A Transcriptional regulat 58.9 6.2 0.00021 32.7 3.0 44 139-186 56-110 (129)
107 2ro1_A Transcription intermedi 57.9 2.2 7.4E-05 37.5 0.0 44 140-187 2-49 (189)
108 2kgg_A Histone demethylase jar 57.6 2.9 9.8E-05 28.8 0.6 44 142-185 4-52 (52)
109 3ask_A E3 ubiquitin-protein li 57.2 2.3 7.8E-05 38.6 0.1 44 142-186 176-224 (226)
110 2knc_B Integrin beta-3; transm 57.1 12 0.00041 28.2 4.1 27 61-87 15-41 (79)
111 2knc_A Integrin alpha-IIB; tra 57.0 38 0.0013 23.7 6.3 12 64-75 16-27 (54)
112 2ks1_B Epidermal growth factor 56.9 11 0.00037 25.4 3.4 26 64-89 14-39 (44)
113 3m62_A Ubiquitin conjugation f 56.5 7.1 0.00024 42.4 3.8 47 140-190 891-938 (968)
114 2ku3_A Bromodomain-containing 56.5 3.5 0.00012 30.4 1.0 49 139-187 15-66 (71)
115 2vpb_A Hpygo1, pygopus homolog 56.4 6.7 0.00023 28.3 2.5 46 140-185 8-64 (65)
116 3shb_A E3 ubiquitin-protein li 56.1 1.9 6.4E-05 32.5 -0.6 44 142-186 28-76 (77)
117 3v43_A Histone acetyltransfera 56.1 13 0.00046 29.4 4.5 33 140-172 5-42 (112)
118 1fp0_A KAP-1 corepressor; PHD 56.0 5.2 0.00018 30.9 1.9 45 139-187 24-72 (88)
119 2cs3_A Protein C14ORF4, MY039 53.9 13 0.00044 28.4 3.7 38 140-177 15-52 (93)
120 2l43_A N-teminal domain from h 52.4 5 0.00017 30.8 1.3 50 139-188 24-76 (88)
121 1z60_A TFIIH basal transcripti 52.1 6.5 0.00022 28.1 1.8 43 141-184 16-58 (59)
122 1wem_A Death associated transc 49.2 8.6 0.0003 28.3 2.2 45 141-187 17-70 (76)
123 4gne_A Histone-lysine N-methyl 48.0 10 0.00034 30.3 2.5 46 137-188 12-63 (107)
124 2yt5_A Metal-response element- 48.0 8.2 0.00028 27.5 1.8 49 139-187 5-61 (66)
125 1x61_A Thyroid receptor intera 45.1 14 0.00049 26.1 2.8 40 140-189 5-44 (72)
126 2k1a_A Integrin alpha-IIB; sin 45.0 36 0.0012 22.6 4.4 19 61-79 11-29 (42)
127 1wyh_A SLIM 2, skeletal muscle 44.7 18 0.0006 25.5 3.2 41 140-190 5-45 (72)
128 2knc_A Integrin alpha-IIB; tra 44.5 45 0.0015 23.3 5.1 26 54-79 9-35 (54)
129 3o70_A PHD finger protein 13; 44.4 4.9 0.00017 29.3 0.1 46 139-186 18-66 (68)
130 2knc_B Integrin beta-3; transm 44.3 23 0.0008 26.6 3.9 30 60-89 10-39 (79)
131 1wew_A DNA-binding family prot 44.2 7.6 0.00026 28.9 1.2 48 140-188 16-73 (78)
132 2co8_A NEDD9 interacting prote 43.4 21 0.00072 26.2 3.6 42 139-191 14-55 (82)
133 1weo_A Cellulose synthase, cat 43.2 1.1E+02 0.0038 23.6 7.6 52 140-191 16-71 (93)
134 2kwj_A Zinc finger protein DPF 43.1 13 0.00046 29.5 2.6 34 141-174 2-41 (114)
135 2kwj_A Zinc finger protein DPF 42.6 2.5 8.6E-05 33.9 -1.9 47 142-189 60-110 (114)
136 1wee_A PHD finger family prote 42.5 3.2 0.00011 30.4 -1.2 47 140-187 16-66 (72)
137 2dj7_A Actin-binding LIM prote 41.6 19 0.00063 26.5 3.0 40 139-189 14-53 (80)
138 1weu_A Inhibitor of growth fam 41.5 7.8 0.00027 30.1 0.9 45 139-188 35-86 (91)
139 2k1k_A Ephrin type-A receptor 40.4 36 0.0012 22.0 3.8 19 59-77 12-30 (38)
140 2cu8_A Cysteine-rich protein 2 40.2 12 0.00041 26.9 1.7 40 140-190 9-48 (76)
141 1y02_A CARP2, FYVE-ring finger 39.8 4.9 0.00017 32.8 -0.6 49 140-188 19-67 (120)
142 1pi7_A VPU protein, U ORF prot 39.7 42 0.0015 21.5 4.0 20 63-82 7-26 (36)
143 1x4l_A Skeletal muscle LIM-pro 39.6 20 0.00069 25.3 2.9 40 140-189 5-46 (72)
144 2l8s_A Integrin alpha-1; trans 39.2 79 0.0027 22.1 5.6 25 55-79 7-32 (54)
145 1x4k_A Skeletal muscle LIM-pro 39.0 16 0.00055 25.8 2.2 41 140-190 5-45 (72)
146 1iml_A CRIP, cysteine rich int 38.0 15 0.0005 26.5 1.9 38 142-190 2-39 (76)
147 2k9j_B Integrin beta-3; transm 37.1 56 0.0019 21.6 4.5 15 68-82 21-35 (43)
148 1g47_A Pinch protein; LIM doma 37.0 19 0.00067 25.7 2.4 41 140-190 11-51 (77)
149 1wen_A Inhibitor of growth fam 36.7 19 0.00064 26.4 2.3 44 139-187 15-65 (71)
150 1wfk_A Zinc finger, FYVE domai 36.6 21 0.00072 27.2 2.6 54 137-190 6-66 (88)
151 2gmg_A Hypothetical protein PF 36.5 7.2 0.00025 31.2 -0.1 27 161-192 72-98 (105)
152 1x63_A Skeletal muscle LIM-pro 36.3 18 0.00061 26.3 2.2 41 140-190 15-55 (82)
153 1pi7_A VPU protein, U ORF prot 36.0 64 0.0022 20.6 4.4 27 60-86 8-34 (36)
154 2l3k_A Rhombotin-2, linker, LI 35.2 17 0.0006 28.9 2.1 37 142-188 10-46 (123)
155 3t7l_A Zinc finger FYVE domain 34.7 21 0.00071 27.2 2.4 50 139-188 19-74 (90)
156 2ysm_A Myeloid/lymphoid or mix 34.1 6.3 0.00022 31.1 -0.8 45 142-187 56-104 (111)
157 1joc_A EEA1, early endosomal a 34.0 21 0.00071 29.0 2.4 35 139-173 68-102 (125)
158 1iij_A ERBB-2 receptor protein 33.5 17 0.00058 23.2 1.3 7 60-66 10-16 (35)
159 3f6q_B LIM and senescent cell 33.3 18 0.00062 25.2 1.7 41 140-190 11-51 (72)
160 2rsd_A E3 SUMO-protein ligase 33.2 5.9 0.0002 28.7 -1.0 45 141-186 11-64 (68)
161 1afo_A Glycophorin A; integral 32.7 97 0.0033 20.2 4.8 20 59-78 11-30 (40)
162 1x68_A FHL5 protein; four-and- 31.8 30 0.001 24.7 2.8 40 140-189 5-46 (76)
163 2cor_A Pinch protein; LIM doma 31.8 33 0.0011 24.9 3.0 40 139-190 14-53 (79)
164 2k9j_B Integrin beta-3; transm 31.8 76 0.0026 20.9 4.5 29 59-87 8-36 (43)
165 3i2d_A E3 SUMO-protein ligase 30.8 34 0.0012 33.2 3.6 47 141-190 250-300 (371)
166 1vfy_A Phosphatidylinositol-3- 30.7 30 0.001 25.1 2.6 34 140-173 11-44 (73)
167 2d8y_A Eplin protein; LIM doma 30.6 31 0.0011 25.7 2.7 41 140-191 15-55 (91)
168 1z2q_A LM5-1; membrane protein 30.1 28 0.00095 26.1 2.3 36 139-174 20-55 (84)
169 2yw8_A RUN and FYVE domain-con 30.0 30 0.001 25.8 2.5 35 139-173 18-52 (82)
170 3s8f_C Cytochrome C oxidase po 29.8 62 0.0021 20.5 3.5 19 62-80 12-30 (34)
171 4fo9_A E3 SUMO-protein ligase 29.1 38 0.0013 32.7 3.6 47 141-190 216-266 (360)
172 3mpx_A FYVE, rhogef and PH dom 28.9 12 0.0004 36.2 0.0 49 140-188 375-430 (434)
173 1a7i_A QCRP2 (LIM1); LIM domai 28.9 16 0.00053 26.7 0.7 40 140-190 7-46 (81)
174 3zyq_A Hepatocyte growth facto 28.5 25 0.00084 31.4 2.1 36 139-174 163-198 (226)
175 1dvp_A HRS, hepatocyte growth 28.4 23 0.00079 31.3 1.9 36 139-174 160-195 (220)
176 1nyp_A Pinch protein; LIM doma 28.3 33 0.0011 23.7 2.3 39 140-190 5-43 (66)
177 1zbd_B Rabphilin-3A; G protein 28.2 25 0.00086 29.0 1.9 47 139-186 54-106 (134)
178 2d8x_A Protein pinch; LIM doma 27.8 33 0.0011 24.0 2.3 39 140-190 5-43 (70)
179 2k1a_A Integrin alpha-IIB; sin 27.4 60 0.0021 21.4 3.3 26 54-79 7-33 (42)
180 1zfo_A LAsp-1; LIM domain, zin 26.6 31 0.0011 20.9 1.7 28 141-171 4-31 (31)
181 2ehe_A Four and A half LIM dom 26.4 43 0.0015 24.2 2.8 40 140-189 15-54 (82)
182 1x4u_A Zinc finger, FYVE domai 25.5 34 0.0011 25.6 2.1 34 139-172 13-46 (84)
183 2d8z_A Four and A half LIM dom 25.3 44 0.0015 23.2 2.6 38 140-189 5-42 (70)
184 1q90_G Cytochrome B6F complex 25.3 1.1E+02 0.0036 19.7 4.0 25 64-88 6-30 (37)
185 1x62_A C-terminal LIM domain p 25.1 38 0.0013 24.4 2.2 39 140-190 15-53 (79)
186 2l4z_A DNA endonuclease RBBP8, 24.7 29 0.00098 27.8 1.6 38 141-189 62-99 (123)
187 3c6w_A P28ING5, inhibitor of g 24.4 16 0.00056 25.7 0.1 42 140-186 9-57 (59)
188 1rh5_C Secbeta; protein transl 23.1 1E+02 0.0035 21.3 4.0 28 49-76 20-47 (53)
189 2dar_A PDZ and LIM domain prot 23.1 33 0.0011 25.4 1.6 39 140-190 25-63 (90)
190 2vnf_A ING 4, P29ING4, inhibit 23.0 16 0.00055 25.7 -0.2 42 140-186 10-58 (60)
191 1x6a_A LIMK-2, LIM domain kina 23.0 42 0.0014 24.1 2.2 37 141-189 16-52 (81)
192 2cur_A Skeletal muscle LIM-pro 21.6 50 0.0017 22.9 2.3 38 140-189 5-42 (69)
193 1wig_A KIAA1808 protein; LIM d 21.2 64 0.0022 22.9 2.8 38 140-189 5-42 (73)
194 3j1r_A Archaeal adhesion filam 21.2 1.4E+02 0.0047 17.6 3.9 21 59-79 3-23 (26)
195 1v6g_A Actin binding LIM prote 21.2 54 0.0018 23.6 2.4 38 141-190 16-53 (81)
196 2egq_A FHL1 protein; LIM domai 21.1 40 0.0014 24.0 1.6 40 140-189 15-57 (77)
197 3kqi_A GRC5, PHD finger protei 20.7 28 0.00097 25.4 0.7 45 143-187 12-61 (75)
198 1x64_A Alpha-actinin-2 associa 20.5 56 0.0019 24.1 2.4 40 139-190 24-63 (89)
199 3a1b_A DNA (cytosine-5)-methyl 20.4 75 0.0026 27.0 3.4 33 140-176 79-113 (159)
200 1m3v_A FLIN4, fusion of the LI 20.2 55 0.0019 25.7 2.5 47 142-190 34-81 (122)
201 2o35_A Hypothetical protein DU 20.1 40 0.0014 26.6 1.5 11 166-176 43-53 (105)
202 2wwb_C SEC61BETA, protein tran 20.0 62 0.0021 25.3 2.6 26 49-74 60-85 (96)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.60 E-value=7.1e-16 Score=122.39 Aligned_cols=77 Identities=27% Similarity=0.653 Sum_probs=67.8
Q ss_pred cCCCCCCHHHHhhcceeEeecCCC-CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 113 GNNVGLDEALIKSITVCKYKKGDG-LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 113 ~~~~gl~~~~i~~lp~~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
....+++++.++.||.+++..... ..+...|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 567789999999999999987553 345668999999999999899998 99999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-16 Score=118.20 Aligned_cols=68 Identities=35% Similarity=0.864 Sum_probs=59.7
Q ss_pred HhhcceeEeecCCCCcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 123 IKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 123 i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
++.||.++++......+...|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+...
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45688888887666667788999999999988889998 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=3.1e-14 Score=101.74 Aligned_cols=51 Identities=53% Similarity=1.305 Sum_probs=46.1
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
+..+|+||++.|..++.+..++.|+|.||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7e-14 Score=105.98 Aligned_cols=54 Identities=35% Similarity=0.925 Sum_probs=48.2
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP 192 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 192 (352)
.....|+||++.|..+..+++++ |+|.||..||..|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34668999999999988888898 9999999999999998889999999987643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-13 Score=105.80 Aligned_cols=55 Identities=44% Similarity=0.988 Sum_probs=48.8
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCC
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPA 193 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 193 (352)
.+...|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34578999999999888888898 99999999999999988999999999876543
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=103.00 Aligned_cols=52 Identities=42% Similarity=1.004 Sum_probs=46.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
....|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4568999999998888888898 999999999999999889999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-13 Score=105.24 Aligned_cols=52 Identities=29% Similarity=0.854 Sum_probs=42.0
Q ss_pred CCCCCccccccccc-----------CcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQE-----------HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
++..|+||++.|.. ++.++.++.|+|.||..||..||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34568888888754 44465665699999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.33 E-value=7.4e-13 Score=94.34 Aligned_cols=50 Identities=32% Similarity=0.798 Sum_probs=42.6
Q ss_pred CCCCCcccccccccCc-ceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHE-SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
+...|+||++.|..++ .+++++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999996543 467777 9999999999999998899999998763
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=6e-13 Score=109.06 Aligned_cols=52 Identities=29% Similarity=0.623 Sum_probs=41.9
Q ss_pred CCCCcccccccccCc---------------ceeccCCCCCcccHhHHHHHHh-----cCCCCcccccccccCC
Q 036833 140 GSDCSVCLSEFQEHE---------------SLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRATIISFP 192 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~~~~ 192 (352)
...|+|||+.|..+. .+++++ |+|+||..||..|+. .+.+||+||+.+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 458999999997643 334677 999999999999993 4678999999886553
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.6e-12 Score=106.38 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCc---------------ceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHE---------------SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
+.+.|+||++.|...- .+++++ |+|.||..||..||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999997541 255676 9999999999999999999999999864
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.5e-12 Score=95.43 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=43.1
Q ss_pred cCCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 138 VEGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
.+...|+||++.|... ..+.+++ |+|.||..||..|+..+..||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3467899999999764 3346777 9999999999999998899999999874
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.5e-12 Score=96.20 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=44.1
Q ss_pred CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
+...|+||++.|... ..+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 456899999998763 4446777 999999999999999989999999988654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=3.7e-12 Score=93.12 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=43.3
Q ss_pred CCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 140 GSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
..+|+||++.+... ..+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999763 3446777 999999999999999889999999988654
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.5e-12 Score=96.71 Aligned_cols=52 Identities=31% Similarity=0.777 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCcceeccCCCC-----CcccHhHHHHHHhcC--CCCcccccccccCC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCN-----HAFHLPCIDTWLKSH--SSCPLCRATIISFP 192 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~ 192 (352)
+...|.||+++|..++.+ ++| |+ |.||..||+.||..+ .+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 457899999999877766 588 86 999999999999764 58999999986543
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.9e-12 Score=94.66 Aligned_cols=49 Identities=33% Similarity=0.973 Sum_probs=42.8
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
.+...|+||++.+.. .+++ |+|.||..||..|+..+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 346789999999876 5677 999999999999999889999999988654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5e-12 Score=95.18 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP 192 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 192 (352)
+...|+||++.+.. ...++ |+|.||..||..|+..+..||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 45689999999866 45667 9999999999999998899999999986543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=91.30 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=43.6
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP 192 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 192 (352)
..+...|+||++.|.. .+.+++ |+|.||..||..|+..+..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3345689999999876 244446 9999999999999988889999999986543
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=91.57 Aligned_cols=49 Identities=35% Similarity=0.905 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
....|+||++.+.. ....++ |||.||..|+..|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 35689999999865 246777 99999999999999988999999998753
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.15 E-value=3.7e-12 Score=105.99 Aligned_cols=51 Identities=33% Similarity=0.726 Sum_probs=0.9
Q ss_pred CCCCCcccccccccC-------------cc--eeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEH-------------ES--LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~-------------~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
..+.|+||++.|... +. +..++ |+|.||..||..||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 356899999999752 22 23345 99999999999999999999999998643
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.8e-11 Score=93.30 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=44.9
Q ss_pred CcCCCCCcccccccccCcc-eeccCCCCCcccHhHHHHHHhcC---CCCcccccccccC
Q 036833 137 LVEGSDCSVCLSEFQEHES-LRLLPKCNHAFHLPCIDTWLKSH---SSCPLCRATIISF 191 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~ 191 (352)
..+...|+||++.|...+. .++++ |||.||..||..|+..+ ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3455789999999987664 66777 99999999999999875 6899999987654
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=91.75 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=42.4
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~ 191 (352)
...+|+||++.+..++.+. .|+|.||..||.+||+.+ .+||+||++|...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 3568999999998776554 499999999999999876 7899999988643
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7e-11 Score=91.00 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
....|+||++.|.. ..+++ |+|.||..||..|+.....||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45689999999966 34577 9999999999999998889999999884
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.1e-11 Score=88.18 Aligned_cols=50 Identities=30% Similarity=0.661 Sum_probs=41.2
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh---cCCCCcccccccccC
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK---SHSSCPLCRATIISF 191 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~ 191 (352)
.+...|+||++.|.. ...++ |||.||..||..|+. .+..||+||+.+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 346789999999875 45567 999999999999996 456899999988653
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.06 E-value=5.3e-11 Score=101.08 Aligned_cols=47 Identities=38% Similarity=0.866 Sum_probs=41.1
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+||++.|.. ..++| |||.||..||..|+..+.+||+||+++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3479999999976 45678 99999999999999999999999998743
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=86.49 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHH-hcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-KSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~ 191 (352)
+...|+||++.+... ..++ |||.||..||..|+ ..+..||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 456799999998763 3366 99999999999999 4567899999988653
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=88.11 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=40.5
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~ 190 (352)
.+...|+||++.|.. ...++.|||.||..||..|+..+ ..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345689999999976 33465599999999999999765 689999997544
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=4.2e-10 Score=86.44 Aligned_cols=49 Identities=33% Similarity=0.689 Sum_probs=41.3
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc------CCCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS------HSSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~ 190 (352)
.+...|+||++.|... .+++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999998763 3677 9999999999999976 6689999998764
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=91.96 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC-CCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~ 190 (352)
+...|+||++.|.. .+.+++ |||.||..||..|+..+ ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34679999999975 233377 99999999999999877 689999999854
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.1e-10 Score=86.50 Aligned_cols=50 Identities=32% Similarity=0.674 Sum_probs=41.9
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc------CCCCcccccccccC
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS------HSSCPLCRATIISF 191 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~ 191 (352)
.+...|+||++.|.. ...++ |+|.||..|+..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 345689999999976 34567 9999999999999976 77899999988653
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2.2e-10 Score=95.15 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=43.8
Q ss_pred CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
+...|+||++.|... ..++.++ |||.||..||..|++.+.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 356899999999764 3446777 999999999999999989999999988543
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.97 E-value=4.7e-10 Score=85.53 Aligned_cols=49 Identities=20% Similarity=0.559 Sum_probs=41.4
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
.+...|+||++.|.. ..+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345689999999976 34567 9999999999999976 7889999998754
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.6e-10 Score=81.29 Aligned_cols=44 Identities=36% Similarity=0.762 Sum_probs=36.3
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh---cCCCCccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK---SHSSCPLC 184 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 184 (352)
..+...|+||++.|.. ..+++ |||.||..||..|+. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999976 44567 999999999999997 45689998
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=4.6e-10 Score=89.64 Aligned_cols=48 Identities=25% Similarity=0.677 Sum_probs=40.5
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+||++.|... +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45799999999762 33346 99999999999999988899999998754
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=87.83 Aligned_cols=49 Identities=33% Similarity=0.631 Sum_probs=41.1
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-------CCCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-------HSSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i~~ 190 (352)
.+...|+||++.|.. ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345689999999976 34577 9999999999999976 5689999998864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=6.6e-10 Score=81.89 Aligned_cols=52 Identities=17% Similarity=0.508 Sum_probs=40.7
Q ss_pred CCCCccccc-ccccCcce-eccCCCCCcccHhHHHHHHhc-CCCCcccccccccCC
Q 036833 140 GSDCSVCLS-EFQEHESL-RLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISFP 192 (352)
Q Consensus 140 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 192 (352)
...|+||++ .|...... .+++ |||.||..||..|+.. ...||+||+.+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 467999999 77665433 3466 9999999999999754 467999999886543
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.4e-10 Score=79.02 Aligned_cols=43 Identities=35% Similarity=0.916 Sum_probs=35.5
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHH---hcCCCCccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL---KSHSSCPLC 184 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C 184 (352)
.+...|+||++.+... .+++ |+|.||..||..|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456899999999763 4577 99999999999995 356789998
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.89 E-value=6.8e-10 Score=90.10 Aligned_cols=49 Identities=24% Similarity=0.662 Sum_probs=41.4
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
+...|+||++.|.. .+.+++ |||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 35689999999975 244447 99999999999999988999999998764
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=5.8e-10 Score=92.53 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=43.2
Q ss_pred CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
+...|+||++.|... .....++ |||.||..||+.|+..+.+||+||+.+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 356799999998763 2335666 999999999999999999999999988653
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.88 E-value=8.8e-10 Score=91.61 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=39.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC-CCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~ 190 (352)
...|+||++.|.. ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999999986 45567 99999999999999754 489999998854
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1.2e-09 Score=95.16 Aligned_cols=48 Identities=33% Similarity=0.751 Sum_probs=40.2
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
...|+||++.|.. .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4579999999986 344457 9999999999999986 7789999998853
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=84.96 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=40.0
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcccccccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATII 189 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 189 (352)
..+...|+||++.|.. ...++.|||.||..||..|+.. +..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3455689999999976 3455559999999999999964 358999999863
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.8e-09 Score=87.58 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=39.6
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC---CCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS---SCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~i~~~ 191 (352)
...|+||++.|.. ...++ |||.||..||..|+..+. .||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4579999999876 34467 999999999999997653 899999987653
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=8.7e-09 Score=79.43 Aligned_cols=55 Identities=18% Similarity=0.402 Sum_probs=41.5
Q ss_pred cCCCCCcccccccccCcce-eccCCCCCcccHhHHHHHHh-cCCCCcccccccccCCC
Q 036833 138 VEGSDCSVCLSEFQEHESL-RLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISFPA 193 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~ 193 (352)
.+..+|+||++.+...+.. .-++ |||.||..|+..|+. .+..||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4556899999998654322 2234 999999999999974 35689999999876543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=2.9e-09 Score=87.85 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=41.1
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCccccccccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIIS 190 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~ 190 (352)
..+...|+||++.+... ..++ |||.||..||..|+.... .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 33456899999999763 4567 999999999999997654 89999998754
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.76 E-value=3.8e-09 Score=91.22 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=40.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~ 191 (352)
...|+||++.|.. ..+++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4579999999976 34577 999999999999997654 899999998654
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.8e-09 Score=78.88 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCcceecc--CCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLL--PKCNHA-FHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
+...|.||++.+.+ ..++ | |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999999765 3444 8 9999 899999999988889999999874
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.73 E-value=1.6e-09 Score=88.78 Aligned_cols=47 Identities=32% Similarity=0.833 Sum_probs=39.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
...|+||++.|.. ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4579999999875 45567 9999999999999965 6689999998854
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.72 E-value=5.8e-09 Score=85.54 Aligned_cols=48 Identities=29% Similarity=0.548 Sum_probs=40.4
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~ 191 (352)
...|+||++.|.. ...++ |||.||..||..|+.. +..||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4579999999976 34467 9999999999999976 67899999988653
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.67 E-value=7.5e-09 Score=76.33 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
....|.||++.+.+.. +..+| |||. |+..|+..|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3568999999876521 22348 9998 999999999988889999999874
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.66 E-value=1e-08 Score=101.01 Aligned_cols=48 Identities=25% Similarity=0.776 Sum_probs=41.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~ 191 (352)
...|+||++.+.. ...+| |||.||..|+..|+. .+..||+||+.+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3589999999865 66788 999999999999998 678899999988653
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.63 E-value=2.1e-08 Score=78.27 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45689999999987 55677 99999999999999988999999988753
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=9.4e-09 Score=73.86 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=38.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
+...|+||++.|.. .++++ |+|.||..||..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45679999999986 46788 9999999999885 46799999987653
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.58 E-value=3.3e-08 Score=79.69 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45689999999987 55677 99999999999999888899999998754
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.56 E-value=1.7e-08 Score=86.26 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~ 189 (352)
+...|+||++.|... ..++ |||.||..||..|+.... .||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456899999999874 4466 999999999999997654 8999999874
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.56 E-value=4.7e-08 Score=78.50 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCCCCcccccccccCcceeccCCCC-CcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCN-HAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
+...|+||++.|.+ ..+++ || |.|+..||..|+..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45689999999987 45677 99 999999999999888899999998754
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.56 E-value=1.6e-08 Score=76.84 Aligned_cols=43 Identities=23% Similarity=0.683 Sum_probs=37.0
Q ss_pred CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+||++.+.. ..++| |||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999999866 66778 9999 999999999 789999998753
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.4e-08 Score=83.50 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=37.8
Q ss_pred CCCCcccccccccCcceecc-CCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLL-PKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4689999999976 3455 7 999999999999987 78999999874
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.54 E-value=2.1e-08 Score=96.86 Aligned_cols=53 Identities=25% Similarity=0.660 Sum_probs=40.3
Q ss_pred cCCCCCcccccccccCccee----ccCCCCCcccHhHHHHHHhcC-----------CCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLR----LLPKCNHAFHLPCIDTWLKSH-----------SSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~----~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~i~~ 190 (352)
....+|+||++.+..+..+- ..++|+|.||..|+.+||++. ..||.||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35678999999998733221 123599999999999999652 359999998864
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.41 E-value=1.6e-07 Score=68.72 Aligned_cols=48 Identities=23% Similarity=0.642 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCcceeccC-CCCC---cccHhHHHHHHhc--CCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLP-KCNH---AFHLPCIDTWLKS--HSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 189 (352)
+...|.||+++. ++.+ ++| .|.| .||..|+..|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999984 3334 578 3445 8999999999954 678999998764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=82.53 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=40.9
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
..+...|+||++.|... ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34556899999999863 4567 9999999999999965 4489999998754
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=71.80 Aligned_cols=43 Identities=23% Similarity=0.688 Sum_probs=35.6
Q ss_pred CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+||++.+.. ..++| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3579999999865 66788 9999 99999964 3689999998854
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=74.76 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=37.7
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC------CCCcc--cccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH------SSCPL--CRAT 187 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 187 (352)
.....|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 345689999999986 34453499999999999999753 48999 9865
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2e-07 Score=69.77 Aligned_cols=44 Identities=32% Similarity=0.789 Sum_probs=37.1
Q ss_pred CCCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
+...|.||++.+.. +.++| |+|. |+..|+.. ...||+||+.|..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45689999998765 77888 9999 99999984 4689999998854
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=2.1e-07 Score=86.31 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=40.3
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
....|+||++.|.+ ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45679999999987 45677 9999999999999976 4559999998743
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=2.5e-07 Score=73.08 Aligned_cols=48 Identities=25% Similarity=0.662 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--------CCCCcc--cccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--------HSSCPL--CRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 187 (352)
+..+|+||++.+...+.+.+++ |+|.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998777666666 9999999999999853 236999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.24 E-value=2.3e-07 Score=71.44 Aligned_cols=43 Identities=30% Similarity=0.679 Sum_probs=36.8
Q ss_pred CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|.||++.+.. +.++| |||. |+..|+..| ..||+||+.+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3579999998765 67788 9999 999999987 489999998864
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.17 E-value=1.1e-06 Score=78.05 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=40.6
Q ss_pred cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833 138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS 190 (352)
Q Consensus 138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 190 (352)
.+...|+||++.|.+ ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345689999999987 45667 9999999999999976 3579999988743
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.03 E-value=8.7e-07 Score=86.29 Aligned_cols=43 Identities=28% Similarity=0.786 Sum_probs=37.1
Q ss_pred CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+||++.+.. ...+| |||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4679999999876 66778 9999 999999998 689999998753
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.97 E-value=2.8e-06 Score=62.25 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
..|+||++.|.+ ..+++.|||+|...||..|+..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 469999999986 345523999999999999998888899999988654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.90 E-value=4.5e-06 Score=78.04 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=38.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCcc--ccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPL--CRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~i~~ 190 (352)
...|+||++.|... |+.+. |||.|+..||..|+..+ ..||+ ||..+..
T Consensus 181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45699999999764 44455 99999999999999754 46999 9997743
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.76 E-value=1.7e-05 Score=73.34 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=40.2
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC--CCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS--SCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~i~~~ 191 (352)
...|.||.+-...+..+ - .|+|.||..|+..|++.+. .||.|+..|...
T Consensus 180 i~~C~iC~~iv~~g~~C--~-~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--S-SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCccc--C-ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 56799999998876444 2 4999999999999997644 899999988654
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=1.8e-05 Score=63.26 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=38.3
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccC
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISF 191 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~ 191 (352)
-|.+|--.+.. ..|+.| |+|+|+.+|+..|.+ ..++||.|+.++...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 48888777654 478899 999999999999984 468899999988543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.95 E-value=0.13 Score=40.50 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=38.9
Q ss_pred CcCCCCCcccccccccCcceeccCCCC-CcccHhHHHHHHhcCCCCcccccccccCC
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCN-HAFHLPCIDTWLKSHSSCPLCRATIISFP 192 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 192 (352)
..+-..|-.|+-+.+. ++. |+ |.+|..|+...|.....||+|..++...-
T Consensus 25 ~~G~~nCKsCWf~~k~---LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG---LVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCSS---EEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccCC---eee---ecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3345679999987653 322 54 99999999999988889999999987543
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.95 E-value=0.11 Score=38.28 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=32.8
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC----CCCccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH----SSCPLCRATI 188 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~i 188 (352)
....|.||.+. ++ +..-..|...||..|++..|..- -.||.|.+..
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 44 43434699999999999887543 3699997653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.26 E-value=0.17 Score=39.52 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
...|.||++.+........+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 457999998754433344476 9999999999984
No 76
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=83.76 E-value=1.4 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Q 036833 57 FSPLIIAVIGILASAFILVTYYTI-ISKYCKRRS 89 (352)
Q Consensus 57 f~~lii~iigil~~~~llv~~~~i-~~~~~~rr~ 89 (352)
++.++ +++|-++++++++.+.++ ..|+++||+
T Consensus 7 ~p~~L-ivlGg~~~lll~~glcI~ccvkcrhRrr 39 (70)
T 2klu_A 7 GSMAL-IVLGGVAGLLLFIGLGIFFSVRSRHRRR 39 (70)
T ss_dssp CSSHH-HHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred hHHHH-HHHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444 566666666666555555 344444433
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.19 E-value=0.31 Score=35.11 Aligned_cols=49 Identities=20% Similarity=0.477 Sum_probs=33.6
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----cCCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 187 (352)
+...|+||...+..+...+.-..|..=||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999998865443333335888899999875432 34569999753
No 78
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=81.28 E-value=3.6 Score=27.76 Aligned_cols=12 Identities=50% Similarity=0.899 Sum_probs=6.4
Q ss_pred chhHHHHHHHHH
Q 036833 57 FSPLIIAVIGIL 68 (352)
Q Consensus 57 f~~lii~iigil 68 (352)
...++.+++|++
T Consensus 11 ~~~Ia~~vVGvl 22 (44)
T 2jwa_A 11 LTSIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 344555666644
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.77 E-value=1.8 Score=33.36 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=22.7
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
.+..|.||-. +..++....- .|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence 4668999953 2233322222 49999999999996
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.20 E-value=1.1 Score=32.08 Aligned_cols=45 Identities=31% Similarity=0.724 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
....|.||... ++ +..-..|...||..|+..-+.. .-.||.|+..
T Consensus 10 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45679999863 34 3333358899999999975432 2369999653
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=77.43 E-value=0.79 Score=40.33 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=33.9
Q ss_pred CCCCcccccccccCcc---eeccCCCCCcccHhHHHHH------Hh-----cCCCCcccccc
Q 036833 140 GSDCSVCLSEFQEHES---LRLLPKCNHAFHLPCIDTW------LK-----SHSSCPLCRAT 187 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~ 187 (352)
+..|+||...|..++. .+.-..|..-||..|+.-- +. ....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3469999999988762 3333458899999997431 11 15689999764
No 82
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.29 E-value=0.55 Score=36.27 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=36.8
Q ss_pred CCCCccccccccc-CcceeccCCCCCcccHhHHHHHHh--------cCCCCcccccccccCCCc
Q 036833 140 GSDCSVCLSEFQE-HESLRLLPKCNHAFHLPCIDTWLK--------SHSSCPLCRATIISFPAA 194 (352)
Q Consensus 140 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~~~~~~ 194 (352)
...|.||...-.. +..+.+-..|...||..|+..-|. ..-.|+.|+.........
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 4579999976432 233444446999999999986543 123699998776554433
No 83
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.06 E-value=5.1 Score=27.00 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.1
Q ss_pred hhHHHHHHH
Q 036833 58 SPLIIAVIG 66 (352)
Q Consensus 58 ~~lii~iig 66 (352)
..+...+++
T Consensus 10 ~aIA~gVVg 18 (44)
T 2l2t_A 10 PLIAAGVIG 18 (44)
T ss_dssp HHHHHHHHH
T ss_pred ceEEEeehH
Confidence 444444444
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.89 E-value=0.69 Score=34.27 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 189 (352)
+...|.||..... ++.++.-..|.--||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987754 3334444468888999999765432 346999987654
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.72 E-value=1.1 Score=30.56 Aligned_cols=44 Identities=34% Similarity=0.776 Sum_probs=28.5
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 186 (352)
.|.||...-..++.+ .-..|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488898654333333 33369999999999754432 225999864
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.12 E-value=0.6 Score=41.48 Aligned_cols=46 Identities=33% Similarity=0.576 Sum_probs=32.3
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRATI 188 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 188 (352)
....|.+|... ++ +..-..|...||..|+.+.+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999743 33 4444469999999999876543 23699998643
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.44 E-value=0.66 Score=40.38 Aligned_cols=45 Identities=33% Similarity=0.612 Sum_probs=31.6
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRATI 188 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 188 (352)
.+.|.+|... |+ +..-..|...||..|+..-+.. .-.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999854 44 4344469999999998776543 23699998653
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=72.90 E-value=0.86 Score=32.64 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=30.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
....|.||... ++ +..-..|...||..|+..-|.. .-.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45679999753 33 3333358899999999864432 2259999764
No 89
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=72.62 E-value=5.6 Score=26.77 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 036833 66 GILASAFIL 74 (352)
Q Consensus 66 gil~~~~ll 74 (352)
|+++.++++
T Consensus 20 Gv~~~~ii~ 28 (44)
T 2ks1_B 20 ALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344433333
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.60 E-value=0.79 Score=35.70 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=32.1
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
+...|.||...-..+. +.+-..|...||..|+..=|.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~-ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDK-LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGG-CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCC-EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4567999987643333 4444469999999999843322 2259999764
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.19 E-value=0.81 Score=32.09 Aligned_cols=44 Identities=34% Similarity=0.714 Sum_probs=29.3
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRA 186 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 186 (352)
+...|.||... ++.+. -..|...||..|+..-|.. .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~-Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEE-CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEE-cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999874 44333 3358899999999864432 224888853
No 92
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=65.11 E-value=11 Score=25.35 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 036833 58 SPLIIAVIGILASAFILVTYYTIISKYCKRRS 89 (352)
Q Consensus 58 ~~lii~iigil~~~~llv~~~~i~~~~~~rr~ 89 (352)
++.-.+..+++. +++++++...+.-|.|||+
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 454455555555 5554444444444444444
No 93
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=65.02 E-value=0.94 Score=36.14 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=32.8
Q ss_pred CCCcccccccccCcceeccC-CCCCcccHhHHHHHH----------hcCCCCccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLP-KCNHAFHLPCIDTWL----------KSHSSCPLCRATI 188 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~i 188 (352)
..|.||...+......+.-. .|..=||..|+.--. .....||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999986654444443 587779999975321 0344799998754
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.94 E-value=1.3 Score=32.66 Aligned_cols=44 Identities=32% Similarity=0.708 Sum_probs=27.4
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc-----CCCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 186 (352)
.|.||...-..++ +.+-..|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~-ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGG-EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCC-EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4677775433333 4344468899999999854322 226888864
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.52 E-value=6.3 Score=33.14 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=31.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----------cCCCCccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----------SHSSCPLCRA 186 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~ 186 (352)
.++.|.+|.+. |+ +..-..|..+||..||..-|. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35689999864 44 444446999999999997662 1235999964
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.41 E-value=1.1 Score=33.74 Aligned_cols=44 Identities=30% Similarity=0.686 Sum_probs=28.4
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc-----CCCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 186 (352)
.|.||...-..++ +.+-..|...||..|+.+=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~~-ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNM-QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTT-EEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCC-EEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6889986533333 4344469999999999853321 225888864
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.76 E-value=0.98 Score=32.06 Aligned_cols=46 Identities=33% Similarity=0.718 Sum_probs=31.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 189 (352)
...|.||... ++.+. -..|...||..|+..-+.. .-.||.|+....
T Consensus 5 ~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC---SSCEE-CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC---CcEEE-cCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4679999864 44333 3359999999999864432 235999976543
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=63.12 E-value=1.7 Score=37.18 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=31.4
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHH-----hcCCCCcccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-----KSHSSCPLCRAT 187 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 187 (352)
...| +|......+...+.-..|..-||..|+..-. ...-.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 4568 9998865443343334688889999985322 124579999764
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.29 E-value=1.8 Score=34.69 Aligned_cols=45 Identities=27% Similarity=0.690 Sum_probs=29.2
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 186 (352)
.|.||...-...+.+..-..|...||..|++.-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888642222334444469999999999765532 226999874
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.86 E-value=2.4 Score=33.68 Aligned_cols=37 Identities=24% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK 176 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 176 (352)
+.+.|.||.+.=...+.+.-- .|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccc
Confidence 456899998763222223333 5999999999988763
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.55 E-value=2 Score=31.09 Aligned_cols=45 Identities=31% Similarity=0.672 Sum_probs=30.5
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
+...|.||... ++ +..-..|...||..|+..-|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45679999864 44 3333358899999999864432 2359999653
No 102
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=61.31 E-value=14 Score=24.76 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036833 58 SPLIIAVIGILASAFILVTYYTIISKYCKRR 88 (352)
Q Consensus 58 ~~lii~iigil~~~~llv~~~~i~~~~~~rr 88 (352)
+..-.+..|++..+++++++...+..|.+||
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3445555666665555544444333334443
No 103
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.06 E-value=16 Score=25.65 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 036833 64 VIGILASAFILV 75 (352)
Q Consensus 64 iigil~~~~llv 75 (352)
+++++++++++.
T Consensus 13 i~svl~GLLLL~ 24 (54)
T 2l8s_A 13 LLSAFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 104
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.82 E-value=5.7 Score=29.62 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=30.9
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----cCCCCccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRATI 188 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i 188 (352)
...| ||...+..+...+.-..|..=||..|+..-.. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3457 99888753333333335887799999864321 245799998653
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=59.22 E-value=2.7 Score=32.92 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc---CCCCccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS---HSSCPLCRA 186 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 186 (352)
...| ||-.....+..+.. ..|.--||..|+..-+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3568 89877665554444 459999999998753322 346999963
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.90 E-value=6.2 Score=32.65 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=30.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHH------h-----cCCCCccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL------K-----SHSSCPLCRA 186 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~ 186 (352)
.++.|.||.+. ++ +..-..|..+||..||..-+ . ..=.|++|+.
T Consensus 56 ~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45679999864 33 43444699999999999752 1 1236999954
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=57.94 E-value=2.2 Score=37.46 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=29.8
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
...|.+|... ++.+. -..|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCC-CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeE-CCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999854 44333 3358899999999764432 2259999765
No 108
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=57.56 E-value=2.9 Score=28.77 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCcccccccccCcceeccC-CCCCcccHhHHHHHH----hcCCCCcccc
Q 036833 142 DCSVCLSEFQEHESLRLLP-KCNHAFHLPCIDTWL----KSHSSCPLCR 185 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 185 (352)
.|.+|...+..+...+.-. .|..=||..|+..-. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886555444444 488779999976432 2456799885
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=57.15 E-value=2.3 Score=38.63 Aligned_cols=44 Identities=32% Similarity=0.708 Sum_probs=25.3
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc-----CCCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 186 (352)
.|.+|...-..+. +.+-..|...||..|+.+=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~-lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--C-CEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCC-eEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5888876433333 3333469999999999854422 226999965
No 110
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.09 E-value=12 Score=28.23 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036833 61 IIAVIGILASAFILVTYYTIISKYCKR 87 (352)
Q Consensus 61 ii~iigil~~~~llv~~~~i~~~~~~r 87 (352)
+.++.|++++.++++++|.++..+.-|
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444333
No 111
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.96 E-value=38 Score=23.71 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 036833 64 VIGILASAFILV 75 (352)
Q Consensus 64 iigil~~~~llv 75 (352)
+++++++++++.
T Consensus 16 i~svl~GLllL~ 27 (54)
T 2knc_A 16 LVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 112
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.86 E-value=11 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 036833 64 VIGILASAFILVTYYTIISKYCKRRS 89 (352)
Q Consensus 64 iigil~~~~llv~~~~i~~~~~~rr~ 89 (352)
..+++.++++++++...+..|.+||+
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 44555555555555544444444443
No 113
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=56.55 E-value=7.1 Score=42.45 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCCCcccccccccCcceeccCCCC-CcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCN-HAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+|-++-|.+ ..++| -| |.|-..+|..||..+.+||.=|.++..
T Consensus 891 ~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4569999999987 55677 76 689999999999989999999998864
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=56.53 E-value=3.5 Score=30.44 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=32.1
Q ss_pred CCCCCccccccc-ccCcceeccCCCCCcccHhHHHHHHh--cCCCCcccccc
Q 036833 139 EGSDCSVCLSEF-QEHESLRLLPKCNHAFHLPCIDTWLK--SHSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~ 187 (352)
+...|.||...- ..++.+.+-..|.-.||..|+..-.. ..-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 456799998753 22334545456999999999975321 12359988653
No 115
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=56.37 E-value=6.7 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=31.8
Q ss_pred CCCCcccccccccCcceeccC-CCCCcccHhHHHHHHh----------cCCCCcccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLP-KCNHAFHLPCIDTWLK----------SHSSCPLCR 185 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~----------~~~~CP~CR 185 (352)
...|.+|...+..++..+.-. .|.--||..|+.---. .+-.||.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 457999999987766565554 5888899999753321 134588885
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=56.08 E-value=1.9 Score=32.53 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=27.4
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----C-CCCccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----H-SSCPLCRA 186 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 186 (352)
.|.||...-..+ .+.+-..|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 467776553333 33333468899999999865432 1 36898875
No 117
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.07 E-value=13 Score=29.40 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCCCccccccc-----ccCcceeccCCCCCcccHhHHH
Q 036833 140 GSDCSVCLSEF-----QEHESLRLLPKCNHAFHLPCID 172 (352)
Q Consensus 140 ~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~Ci~ 172 (352)
...|.+|+..= ..++.+..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45799998752 1122333333599999999995
No 118
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.95 E-value=5.2 Score=30.94 Aligned_cols=45 Identities=31% Similarity=0.673 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
....|.+|... ++ +..-..|.-.||..|+.+=|.. .-.||.|+..
T Consensus 24 n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45679999864 44 3333358888999999775533 2259999754
No 119
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=53.89 E-value=13 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=28.4
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS 177 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 177 (352)
...|.+|.+.+++..-+..-..-.|.||+.|-...+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45799999998876544332245699999999999864
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.38 E-value=5 Score=30.80 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCCCccccccc-ccCcceeccCCCCCcccHhHHHHHHh--cCCCCccccccc
Q 036833 139 EGSDCSVCLSEF-QEHESLRLLPKCNHAFHLPCIDTWLK--SHSSCPLCRATI 188 (352)
Q Consensus 139 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i 188 (352)
+...|.||...- ...+.+.+-..|.-.||..|+..-+. ..-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456799998753 22233444446888999999975431 233699997654
No 121
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.06 E-value=6.5 Score=28.10 Aligned_cols=43 Identities=26% Similarity=0.540 Sum_probs=30.0
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLC 184 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 184 (352)
..|-.|+..|.... ...-++|++.|+.+|=.---..-.+||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999999985422 23355799999999955433444579988
No 122
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.16 E-value=8.6 Score=28.28 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHH---------hcCCCCcccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL---------KSHSSCPLCRAT 187 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~ 187 (352)
..| ||...+..+..+..- .|..=||..|+..-. .....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 457 898887644444433 588889999985321 235689999764
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=48.00 E-value=10 Score=30.28 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=29.5
Q ss_pred CcCCCCCcccccccccCcceeccC--CCCCcccHhHHHHHHhc----CCCCccccccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLP--KCNHAFHLPCIDTWLKS----HSSCPLCRATI 188 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 188 (352)
..+.+.|.+|.+ .++ +..-. .|...||..|+. |.. .-.||.|+-.+
T Consensus 12 ~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 345678999983 244 33332 488999999997 432 22588776544
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=47.96 E-value=8.2 Score=27.45 Aligned_cols=49 Identities=20% Similarity=0.588 Sum_probs=32.4
Q ss_pred CCCCCccccccccc-CcceeccCCCCCcccHhHHHHHHh-------cCCCCcccccc
Q 036833 139 EGSDCSVCLSEFQE-HESLRLLPKCNHAFHLPCIDTWLK-------SHSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~ 187 (352)
+...|.||...... ...+.+-..|.-.||..|+..-+. ..-.||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45679999976433 233444446999999999886331 23369999654
No 125
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.10 E-value=14 Score=26.08 Aligned_cols=40 Identities=25% Similarity=0.562 Sum_probs=28.1
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+...+.+.. . -+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 4579999988775432222 2 568899888 56889988874
No 126
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=45.00 E-value=36 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036833 61 IIAVIGILASAFILVTYYT 79 (352)
Q Consensus 61 ii~iigil~~~~llv~~~~ 79 (352)
.+++++++++++++.++..
T Consensus 11 wiIi~s~l~GLllL~li~~ 29 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444333
No 127
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.74 E-value=18 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+..++.+.. . -+..||..| ..|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCC
Confidence 4579999999886533322 2 578899888 568899887743
No 128
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.45 E-value=45 Score=23.29 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=14.3
Q ss_pred CCCchhHHHHHH-HHHHHHHHHHHHHH
Q 036833 54 GTDFSPLIIAVI-GILASAFILVTYYT 79 (352)
Q Consensus 54 ~~~f~~lii~ii-gil~~~~llv~~~~ 79 (352)
...+|.+++.++ |+++.+++++++|.
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666554 55555555555553
No 129
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.40 E-value=4.9 Score=29.30 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=29.7
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh---cCCCCccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK---SHSSCPLCRA 186 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 186 (352)
+...| ||......+..+..- .|..=||..|+..-.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 998876533334333 5888899999865321 2346998864
No 130
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.34 E-value=23 Score=26.57 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 036833 60 LIIAVIGILASAFILVTYYTIISKYCKRRS 89 (352)
Q Consensus 60 lii~iigil~~~~llv~~~~i~~~~~~rr~ 89 (352)
++.+++|++++++++.++..++.|++..-+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~ 39 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIH 39 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766544
No 131
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.20 E-value=7.6 Score=28.88 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCCCcccccccccCcceecc-CCCCCcccHhHHHHHHh---------cCCCCccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLL-PKCNHAFHLPCIDTWLK---------SHSSCPLCRATI 188 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~i 188 (352)
...| ||-.....+..+..- +.|..=||..|+.---. .+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4568 898875445444332 04888899999864221 245799997643
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.42 E-value=21 Score=26.22 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=31.0
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
....|+.|-..+...+.+.. -+..||..| ..|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 34679999998876655532 577899988 5688998877543
No 133
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=43.19 E-value=1.1e+02 Score=23.58 Aligned_cols=52 Identities=19% Similarity=0.485 Sum_probs=35.3
Q ss_pred CCCCcccccccccCcc--eec-cCCCCCcccHhHHHHHH-hcCCCCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHES--LRL-LPKCNHAFHLPCIDTWL-KSHSSCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~--~~~-lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~ 191 (352)
...|.||-+++..... +.+ --.|+--.+..|.+-=. ..++.||-|++.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 4579999998644221 222 11366668999988655 4578899999988654
No 134
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.12 E-value=13 Score=29.53 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=22.4
Q ss_pred CCCccccccccc------CcceeccCCCCCcccHhHHHHH
Q 036833 141 SDCSVCLSEFQE------HESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 141 ~~C~ICl~~~~~------~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
+.|.||+..-.. ++.++.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999875421 1233333359999999998764
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.63 E-value=2.5 Score=33.92 Aligned_cols=47 Identities=21% Similarity=0.609 Sum_probs=30.4
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRATII 189 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 189 (352)
.|.||...-..++.+ .-..|...||..|+..=|.. .-.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLL-FCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEE-ECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceE-EcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 588887754344433 33359999999999854322 225999876543
No 136
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.47 E-value=3.2 Score=30.43 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHH----hcCCCCcccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL----KSHSSCPLCRAT 187 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 187 (352)
...| ||......+...+.-..|..=||..|+..-. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3468 7988765554343333587779999986532 224569999764
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.63 E-value=19 Score=26.48 Aligned_cols=40 Identities=25% Similarity=0.612 Sum_probs=30.4
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
....|+-|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34679999999876665543 567899888 57999988774
No 138
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.50 E-value=7.8 Score=30.05 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=27.9
Q ss_pred CCCCCcccccccccCcceeccCC--CC-CcccHhHHHHHHhc----CCCCccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPK--CN-HAFHLPCIDTWLKS----HSSCPLCRATI 188 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~i 188 (352)
+...| ||..... ++ ++.-.. |. .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 9988643 43 333334 55 569999997 322 34699997643
No 139
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=40.40 E-value=36 Score=21.95 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 036833 59 PLIIAVIGILASAFILVTY 77 (352)
Q Consensus 59 ~lii~iigil~~~~llv~~ 77 (352)
.+.-++++.++.+++++.+
T Consensus 12 aIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHH
Confidence 3444555555554444433
No 140
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.19 E-value=12 Score=26.95 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=30.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+..++.+.. -+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4579999999887665542 578899888 579999888753
No 141
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.78 E-value=4.9 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=31.5
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 188 (352)
...|..|-..|..-..-..-..||.+|+..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3579999999865321112225999999999777665566798886543
No 142
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=39.74 E-value=42 Score=21.47 Aligned_cols=20 Identities=15% Similarity=0.514 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036833 63 AVIGILASAFILVTYYTIIS 82 (352)
Q Consensus 63 ~iigil~~~~llv~~~~i~~ 82 (352)
+++++++++++.++.|.+..
T Consensus 7 ~ivalivalIiaIVVWtiv~ 26 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVI 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555433
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.56 E-value=20 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=28.8
Q ss_pred CCCCccccccccc--CcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQE--HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+-|-..+.. .+.+.. .-+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCccc--------CEeccCCCcCC
Confidence 4579999998875 223322 2678899888 57999988875
No 144
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.16 E-value=79 Score=22.08 Aligned_cols=25 Identities=8% Similarity=0.382 Sum_probs=13.6
Q ss_pred CCchhHHHHH-HHHHHHHHHHHHHHH
Q 036833 55 TDFSPLIIAV-IGILASAFILVTYYT 79 (352)
Q Consensus 55 ~~f~~lii~i-igil~~~~llv~~~~ 79 (352)
..+|.+++.+ .|+++.+++++++|.
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456655554 555555555555553
No 145
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.99 E-value=16 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+...+.+... -+..||..| ..|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 35799999998875433222 567899888 568899887743
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.00 E-value=15 Score=26.47 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=24.0
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
.|+.|-..+..++.+.. -+..||..| ..|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 47777777765554432 466777777 457777776643
No 147
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=37.08 E-value=56 Score=21.57 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 036833 68 LASAFILVTYYTIIS 82 (352)
Q Consensus 68 l~~~~llv~~~~i~~ 82 (352)
++.-++++++|.++.
T Consensus 21 vliGl~lLliwk~~~ 35 (43)
T 2k9j_B 21 LLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444433
No 148
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.02 E-value=19 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=29.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+...+.+... -+..||..| ..|-.|...|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 46799999998755444322 577899888 568889887754
No 149
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=36.66 E-value=19 Score=26.38 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=27.6
Q ss_pred CCCCCcccccccccCcceeccCC--CC-CcccHhHHHHHHhc----CCCCcccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPK--CN-HAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
+...| ||..... ++ ++.-.. |. .-||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8987542 43 333334 55 579999997 322 3369999764
No 150
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.56 E-value=21 Score=27.17 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=34.3
Q ss_pred CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHH-------hcCCCCccccccccc
Q 036833 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-------KSHSSCPLCRATIIS 190 (352)
Q Consensus 137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~CR~~i~~ 190 (352)
..+...|.+|...|..-..-..--.||++|+..|....+ +....|-.|...+..
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 334568999999987542211122499999999976532 122357778666554
No 151
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.47 E-value=7.2 Score=31.15 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=17.3
Q ss_pred CCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833 161 KCNHAFHLPCIDTWLKSHSSCPLCRATIISFP 192 (352)
Q Consensus 161 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 192 (352)
+||+.|. .-+.....||.|+....+.+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4899881 11233457999998776543
No 152
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.32 E-value=18 Score=26.27 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+..++.+.. . -+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y-KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C-SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE-E-Ccccccccc--------CchhhCCCccCC
Confidence 3579999999887655432 2 577899888 578899887754
No 153
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=35.97 E-value=64 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036833 60 LIIAVIGILASAFILVTYYTIISKYCK 86 (352)
Q Consensus 60 lii~iigil~~~~llv~~~~i~~~~~~ 86 (352)
++..++++++++++-.+.|.-|.+.++
T Consensus 8 ivalivalIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555666666544
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.20 E-value=17 Score=28.85 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=25.2
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 188 (352)
.|+.|-..+...+.+.. .-++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 68899888776443322 2467888887 4677787766
No 155
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.75 E-value=21 Score=27.24 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh------cCCCCccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK------SHSSCPLCRATI 188 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~i 188 (352)
+...|.+|...|..-..-..-..||++|+..|...+.. ....|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34579999999875322112225999999999776531 123466665544
No 156
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.14 E-value=6.3 Score=31.12 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=28.4
Q ss_pred CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCcccccc
Q 036833 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRAT 187 (352)
Q Consensus 142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 187 (352)
.|.||...-... .+..-..|...||..|+..=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 477777653332 33333469999999999864432 2358888653
No 157
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.00 E-value=21 Score=29.02 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=23.6
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 173 (352)
+...|.+|...|..-..-..-..||++|+..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34679999999875321111225999999999544
No 158
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.48 E-value=17 Score=23.23 Aligned_cols=7 Identities=43% Similarity=0.937 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 036833 60 LIIAVIG 66 (352)
Q Consensus 60 lii~iig 66 (352)
++..++|
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 4445555
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.29 E-value=18 Score=25.24 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=30.1
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+...+.+... -+..||..| ..|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCC
Confidence 45799999998876654322 567899888 468889887754
No 160
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=33.19 E-value=5.9 Score=28.68 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=27.1
Q ss_pred CCCcccccccccCcceecc-CCCCCcccHhHHHHHH---h-----cCCCCccccc
Q 036833 141 SDCSVCLSEFQEHESLRLL-PKCNHAFHLPCIDTWL---K-----SHSSCPLCRA 186 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 186 (352)
..| ||-.....+..+..- +.|..=||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 357 797665555544332 1377679999974211 0 1346999974
No 161
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=32.72 E-value=97 Score=20.16 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 036833 59 PLIIAVIGILASAFILVTYY 78 (352)
Q Consensus 59 ~lii~iigil~~~~llv~~~ 78 (352)
.++++++++.++++..+++.
T Consensus 11 ~i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44555566665555444333
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.84 E-value=30 Score=24.73 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=28.5
Q ss_pred CCCCccccccccc--CcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQE--HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+.. ..... .. -+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCC
Confidence 3579999998874 22232 22 677899998 57999988775
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.82 E-value=33 Score=24.90 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
....|+-|-..+. +..+. .-+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3467999999887 33332 2677899888 579999888753
No 164
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.77 E-value=76 Score=20.89 Aligned_cols=29 Identities=7% Similarity=0.231 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036833 59 PLIIAVIGILASAFILVTYYTIISKYCKR 87 (352)
Q Consensus 59 ~lii~iigil~~~~llv~~~~i~~~~~~r 87 (352)
.++.++.|++++++++-++..++.|++-.
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777766666666666666643
No 165
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=30.79 E-value=34 Score=33.16 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCCcccccccccCcceeccCCCCCc--ccHhHHHHHHhc--CCCCccccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHA--FHLPCIDTWLKS--HSSCPLCRATIIS 190 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~i~~ 190 (352)
..|++-+..|... +|-.. |.|. |-..-+...... .-.||+|.+.+..
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 4599887777653 66665 9998 443333332222 3369999887644
No 166
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.67 E-value=30 Score=25.15 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHH
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 173 (352)
...|.+|...|..-..-..--.||++|+..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3579999999875321111224999999999643
No 167
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.62 E-value=31 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=30.7
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 191 (352)
...|+.|-..+...+.+. . -+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 457999999987666443 2 678899988 5688898877543
No 168
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.14 E-value=28 Score=26.10 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
+...|.+|...|..-..-..--.||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 356799999998753211112259999999996654
No 169
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.04 E-value=30 Score=25.78 Aligned_cols=35 Identities=26% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 173 (352)
+...|.+|...|..-..-..--.||++|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999875321111225999999999654
No 170
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=29.82 E-value=62 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036833 62 IAVIGILASAFILVTYYTI 80 (352)
Q Consensus 62 i~iigil~~~~llv~~~~i 80 (352)
+.++++++.++.+.+|+.+
T Consensus 12 V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHeee
Confidence 3344444444444444433
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=29.09 E-value=38 Score=32.70 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCCcccccccccCcceeccCCCCCc--ccHhHHHHHHhc--CCCCccccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHA--FHLPCIDTWLKS--HSSCPLCRATIIS 190 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~i~~ 190 (352)
..|++-+..+... +|-.. |.|. |-..-+...... .-.||+|.+.+..
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 3599888777653 66665 9998 544333333322 3369999887643
No 172
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.90 E-value=12 Score=36.19 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-------cCCCCccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-------SHSSCPLCRATI 188 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i 188 (352)
...|.+|...|..-..-.....||++||..|...++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4679999999865321111225999999999977641 123577775544
No 173
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.89 E-value=16 Score=26.66 Aligned_cols=40 Identities=28% Similarity=0.600 Sum_probs=29.2
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+..++.+.. -+..||..| ..|-.|...|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3579999999876664433 577899888 468889888754
No 174
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.45 E-value=25 Score=31.39 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=24.9
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
+...|.+|...|..-..-.....||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999998754221122259999999997654
No 175
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.35 E-value=23 Score=31.26 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW 174 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 174 (352)
+...|.+|...|..-..-..-..||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 457899999998653211112259999999986543
No 176
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.31 E-value=33 Score=23.71 Aligned_cols=39 Identities=13% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+. ++.+ .. -+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 357999999887 4433 22 678899888 579999888753
No 177
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.18 E-value=25 Score=29.01 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCcccccccc-c-CcceeccCCCCCcccHhHHHHHHhc-C---CCCccccc
Q 036833 139 EGSDCSVCLSEFQ-E-HESLRLLPKCNHAFHLPCIDTWLKS-H---SSCPLCRA 186 (352)
Q Consensus 139 ~~~~C~ICl~~~~-~-~~~~~~lp~C~H~FH~~Ci~~Wl~~-~---~~CP~CR~ 186 (352)
+...|++|...|. . +...... .|.|.+|..|-..-... + -.|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~-~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCE-DCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECT-TTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCC-CCCcccccccCCccCCCCCccceechhhHH
Confidence 4678999999983 2 2233344 59999998885532111 1 13778865
No 178
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.85 E-value=33 Score=23.98 Aligned_cols=39 Identities=23% Similarity=0.588 Sum_probs=27.9
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+.. +.+.. -+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 4579999988863 33322 567899888 468899887754
No 179
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=27.42 E-value=60 Score=21.44 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=15.1
Q ss_pred CCCchhHHHHH-HHHHHHHHHHHHHHH
Q 036833 54 GTDFSPLIIAV-IGILASAFILVTYYT 79 (352)
Q Consensus 54 ~~~f~~lii~i-igil~~~~llv~~~~ 79 (352)
...+|.+++.+ .|+++.+++++++|.
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555 555555555566663
No 180
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.57 E-value=31 Score=20.86 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=19.8
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHH
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCI 171 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 171 (352)
..|+.|-...-..+++.. -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999888766554432 5788998883
No 181
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.39 E-value=43 Score=24.16 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=28.2
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+..++.+.. .-+..||..| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccC
Confidence 3479999998874333322 1478899888 56899988775
No 182
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.51 E-value=34 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHH
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCID 172 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 172 (352)
+...|.+|...|..-..--.--.||++|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3467999999986532111112499999988843
No 183
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.30 E-value=44 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.543 Sum_probs=27.8
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+.. +.+. . -+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVT--Y-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEEE--S-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceEE--E-CccccCCCC--------CccCCCCCcCC
Confidence 4579999998864 3332 2 578899888 56999988874
No 184
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=25.27 E-value=1.1e+02 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 036833 64 VIGILASAFILVTYYTIISKYCKRR 88 (352)
Q Consensus 64 iigil~~~~llv~~~~i~~~~~~rr 88 (352)
+.||++.++.+.+.-.++.-|.+-|
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444433
No 185
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.11 E-value=38 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+.. +.+ . .-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCCC
Confidence 4679999998875 322 2 2678899988 468899887743
No 186
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.73 E-value=29 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.487 Sum_probs=28.8
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
..|+-|-..+.....+.. -+..||..| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 579999998875432332 678899988 57999998885
No 187
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.40 E-value=16 Score=25.66 Aligned_cols=42 Identities=29% Similarity=0.619 Sum_probs=26.3
Q ss_pred CCCCcccccccccCcceeccCC--CC-CcccHhHHHHHHhc----CCCCccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPK--CN-HAFHLPCIDTWLKS----HSSCPLCRA 186 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 186 (352)
..-| ||.... .++ ++.-.. |. .-||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3457 898764 244 333334 65 589999997 322 336999964
No 188
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=23.09 E-value=1e+02 Score=21.29 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=19.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 036833 49 EDDDSGTDFSPLIIAVIGILASAFILVT 76 (352)
Q Consensus 49 ~~~~s~~~f~~lii~iigil~~~~llv~ 76 (352)
++++..-...+..+++++++++++++++
T Consensus 20 ~ee~~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 20 DETFSKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp -CCCCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccccCCeehhhhHHHHHHHHHHH
Confidence 5566688888888888777766665554
No 189
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.05 E-value=33 Score=25.42 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
...|+.|-..+. ++.+. . -+..||..| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 457999999884 33332 2 678899888 579999888754
No 190
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.00 E-value=16 Score=25.73 Aligned_cols=42 Identities=26% Similarity=0.618 Sum_probs=25.8
Q ss_pred CCCCcccccccccCcceeccCC--CC-CcccHhHHHHHHhc----CCCCccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPK--CN-HAFHLPCIDTWLKS----HSSCPLCRA 186 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 186 (352)
...| ||..... ++ ++.-.. |. .-||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987642 43 333334 54 579999997 432 336999964
No 191
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=42 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.432 Sum_probs=27.2
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
..|+.|-..+. +..+ . .-+..||..| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--V-AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCB--C-CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEE--E-ECCceecccc--------CCccCCCCccC
Confidence 47999999887 3322 2 2578899888 56999988874
No 192
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.62 E-value=50 Score=22.90 Aligned_cols=38 Identities=18% Similarity=0.541 Sum_probs=27.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+.. +.+.. -+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 4579999988864 33322 567899888 46889988875
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.18 E-value=64 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=27.3
Q ss_pred CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+-|-..+.. ..+ . .-+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999988764 222 2 3678899888 56888988775
No 194
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=21.18 E-value=1.4e+02 Score=17.61 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 036833 59 PLIIAVIGILASAFILVTYYT 79 (352)
Q Consensus 59 ~lii~iigil~~~~llv~~~~ 79 (352)
+++.+++-|++++.-.+++|.
T Consensus 3 piVA~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 3 PVIATLLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 195
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.17 E-value=54 Score=23.60 Aligned_cols=38 Identities=21% Similarity=0.530 Sum_probs=27.4
Q ss_pred CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
..|+.|-..+. ++.+.. -+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 47999999887 333322 578899888 568889887743
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.09 E-value=40 Score=23.98 Aligned_cols=40 Identities=18% Similarity=0.420 Sum_probs=28.2
Q ss_pred CCCCccccccccc---CcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833 140 GSDCSVCLSEFQE---HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189 (352)
Q Consensus 140 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 189 (352)
...|+.|-..+.. ...... . -+..||..| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCC
Confidence 3579999998874 222222 2 567899888 57999988875
No 197
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.68 E-value=28 Score=25.40 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=28.6
Q ss_pred CcccccccccCcceeccCCCCCcccHhHHHHHHh-----cCCCCcccccc
Q 036833 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRAT 187 (352)
Q Consensus 143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 187 (352)
--||...+..+...+.-..|.-=||..|+..--. ....||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3389877654333333335887799999964321 24579999764
No 198
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.45 E-value=56 Score=24.07 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
....|+.|-..+.. ..+. .-+..||..| ..|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 34579999998874 3222 2678899988 569999888754
No 199
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.40 E-value=75 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=23.9
Q ss_pred CCCCcccccccccCcceeccC--CCCCcccHhHHHHHHh
Q 036833 140 GSDCSVCLSEFQEHESLRLLP--KCNHAFHLPCIDTWLK 176 (352)
Q Consensus 140 ~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~ 176 (352)
+..|.||-+. ..+..-. .|...|+..||+.++.
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 5579998753 3344433 4889999999999974
No 200
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=55 Score=25.75 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=27.0
Q ss_pred CCccccccccc-CcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833 142 DCSVCLSEFQE-HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190 (352)
Q Consensus 142 ~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 190 (352)
.|..|-..+.. +.... ..=+..|+..|...-+.....|-.|...|..
T Consensus 34 ~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 46666666542 11111 1245667777777765543368888777764
No 201
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.13 E-value=40 Score=26.58 Aligned_cols=11 Identities=27% Similarity=1.053 Sum_probs=10.3
Q ss_pred ccHhHHHHHHh
Q 036833 166 FHLPCIDTWLK 176 (352)
Q Consensus 166 FH~~Ci~~Wl~ 176 (352)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 202
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.03 E-value=62 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=14.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHH
Q 036833 49 EDDDSGTDFSPLIIAVIGILASAFIL 74 (352)
Q Consensus 49 ~~~~s~~~f~~lii~iigil~~~~ll 74 (352)
.+|.......+..+++++++++++++
T Consensus 60 ~dds~GlKV~P~~VLv~sl~Fi~~Vi 85 (96)
T 2wwb_C 60 TEDSPGLKVGPVPVLVMSLLFIASVF 85 (96)
T ss_dssp -CCSCCCCCSSCSHHHHHHHHHHHHH
T ss_pred ecCCCceEECCEEehhhHHHHHHHHH
Confidence 44555677777776666655544443
Done!