Query 036834
Match_columns 227
No_of_seqs 133 out of 1206
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1E-39 2.3E-44 255.3 23.3 215 3-221 8-226 (231)
2 PRK09481 sspA stringent starva 100.0 4E-38 8.7E-43 250.2 22.1 197 3-209 9-205 (211)
3 PRK15113 glutathione S-transfe 100.0 2.9E-35 6.3E-40 234.3 18.8 195 1-209 1-211 (214)
4 PLN02473 glutathione S-transfe 100.0 2.6E-35 5.6E-40 234.4 18.4 195 1-206 1-211 (214)
5 PLN02395 glutathione S-transfe 100.0 1.1E-33 2.4E-38 225.2 18.5 195 1-207 1-211 (215)
6 PRK10357 putative glutathione 100.0 3.1E-33 6.8E-38 220.6 20.0 193 5-207 1-201 (202)
7 PRK10542 glutathionine S-trans 100.0 7.5E-34 1.6E-38 223.8 16.2 190 5-207 1-198 (201)
8 KOG0868 Glutathione S-transfer 100.0 1.3E-33 2.7E-38 208.8 15.1 195 2-207 3-208 (217)
9 TIGR01262 maiA maleylacetoacet 100.0 3.9E-33 8.5E-38 221.2 19.0 191 6-207 1-205 (210)
10 TIGR00862 O-ClC intracellular 100.0 1.5E-32 3.3E-37 219.7 21.8 195 10-218 16-232 (236)
11 COG0625 Gst Glutathione S-tran 100.0 8.4E-33 1.8E-37 219.6 19.8 185 5-201 1-199 (211)
12 PRK13972 GSH-dependent disulfi 100.0 2.5E-33 5.4E-38 223.2 16.8 187 5-206 2-205 (215)
13 PTZ00057 glutathione s-transfe 100.0 7.2E-32 1.6E-36 213.4 18.2 193 1-209 1-202 (205)
14 PLN02817 glutathione dehydroge 100.0 4.7E-31 1E-35 215.3 21.4 189 11-215 71-260 (265)
15 PRK11752 putative S-transferas 100.0 3.3E-31 7.2E-36 216.9 19.6 194 4-209 44-261 (264)
16 PLN02378 glutathione S-transfe 100.0 8.4E-31 1.8E-35 208.4 20.7 188 9-212 16-205 (213)
17 KOG0867 Glutathione S-transfer 100.0 6.5E-30 1.4E-34 204.6 17.4 198 4-210 2-213 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 4.3E-29 9.4E-34 198.0 16.2 179 5-201 1-208 (210)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 2.1E-27 4.5E-32 188.3 15.8 177 6-201 1-207 (209)
20 KOG1695 Glutathione S-transfer 100.0 6.7E-27 1.5E-31 182.0 16.8 195 1-209 1-203 (206)
21 KOG4420 Uncharacterized conser 99.9 1.2E-24 2.5E-29 170.1 11.3 204 4-214 26-295 (325)
22 KOG1422 Intracellular Cl- chan 99.9 2.8E-22 6.1E-27 152.6 16.8 196 11-219 19-218 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 5.4E-22 1.2E-26 180.4 16.9 158 1-199 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 6.5E-20 1.4E-24 121.8 8.5 74 7-81 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 6.7E-19 1.5E-23 116.2 9.0 73 5-78 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 7.2E-19 1.6E-23 116.1 8.0 70 5-75 1-73 (73)
27 cd03058 GST_N_Tau GST_N family 99.8 1E-18 2.3E-23 115.7 8.7 73 5-78 1-74 (74)
28 cd03061 GST_N_CLIC GST_N famil 99.8 1.4E-18 3E-23 118.4 8.8 70 11-81 20-89 (91)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 2.1E-18 4.6E-23 115.1 8.2 73 5-78 2-77 (77)
30 cd03060 GST_N_Omega_like GST_N 99.8 4.3E-18 9.4E-23 111.8 8.2 69 5-74 1-70 (71)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 5.2E-18 1.1E-22 112.2 8.1 71 5-76 1-74 (74)
32 COG2999 GrxB Glutaredoxin 2 [P 99.7 3.9E-17 8.4E-22 121.3 13.3 180 5-202 1-209 (215)
33 cd03076 GST_N_Pi GST_N family, 99.7 4E-18 8.6E-23 112.6 6.8 71 5-76 2-72 (73)
34 cd03053 GST_N_Phi GST_N family 99.7 1E-17 2.3E-22 111.4 8.8 72 5-77 2-76 (76)
35 cd03050 GST_N_Theta GST_N fami 99.7 1.4E-17 3E-22 110.8 8.9 73 5-78 1-76 (76)
36 cd03055 GST_N_Omega GST_N fami 99.7 1.4E-17 3.1E-22 114.2 8.5 73 2-75 16-89 (89)
37 cd03048 GST_N_Ure2p_like GST_N 99.7 2.8E-17 6.1E-22 110.7 8.7 73 5-79 2-80 (81)
38 cd03044 GST_N_EF1Bgamma GST_N 99.7 3.1E-17 6.7E-22 108.9 8.1 70 6-76 2-74 (75)
39 cd03056 GST_N_4 GST_N family, 99.7 3.1E-17 6.6E-22 108.1 7.9 70 5-75 1-73 (73)
40 cd03185 GST_C_Tau GST_C family 99.7 1.4E-16 3E-21 116.1 12.0 123 89-216 2-125 (126)
41 cd03049 GST_N_3 GST_N family, 99.7 3.4E-17 7.3E-22 108.1 7.6 70 5-75 1-73 (73)
42 cd03047 GST_N_2 GST_N family, 99.7 4.5E-17 9.7E-22 107.5 7.8 70 5-75 1-73 (73)
43 cd03039 GST_N_Sigma_like GST_N 99.7 2.6E-17 5.7E-22 108.3 6.7 71 5-76 1-72 (72)
44 cd03037 GST_N_GRX2 GST_N famil 99.7 4.2E-17 9.2E-22 107.0 7.6 70 5-76 1-71 (71)
45 cd03046 GST_N_GTT1_like GST_N 99.7 8.3E-17 1.8E-21 106.9 8.4 73 5-79 1-76 (76)
46 cd03042 GST_N_Zeta GST_N famil 99.7 7.8E-17 1.7E-21 106.2 7.9 70 5-75 1-73 (73)
47 cd03051 GST_N_GTT2_like GST_N 99.7 6E-17 1.3E-21 106.9 7.3 70 5-75 1-74 (74)
48 cd03057 GST_N_Beta GST_N famil 99.7 1.2E-16 2.6E-21 106.5 8.3 73 5-79 1-77 (77)
49 KOG3029 Glutathione S-transfer 99.7 5.4E-16 1.2E-20 123.1 12.9 182 4-196 90-354 (370)
50 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.2E-16 2.5E-21 106.6 7.6 72 4-78 1-76 (77)
51 COG0435 ECM4 Predicted glutath 99.7 2.9E-16 6.3E-21 124.4 8.8 207 3-218 50-298 (324)
52 cd03080 GST_N_Metaxin_like GST 99.7 4.5E-16 9.7E-21 103.3 8.5 67 5-79 2-75 (75)
53 cd03077 GST_N_Alpha GST_N fami 99.7 4E-16 8.7E-21 104.5 8.3 72 4-79 1-77 (79)
54 cd03075 GST_N_Mu GST_N family, 99.7 4E-16 8.6E-21 105.3 7.5 73 5-78 1-82 (82)
55 KOG4244 Failed axon connection 99.7 2.7E-15 5.8E-20 118.5 13.1 178 5-197 46-273 (281)
56 PF02798 GST_N: Glutathione S- 99.7 4E-16 8.8E-21 103.7 7.3 70 6-76 2-76 (76)
57 cd03190 GST_C_ECM4_like GST_C 99.7 1.2E-15 2.5E-20 113.8 10.4 124 90-219 4-131 (142)
58 PF13409 GST_N_2: Glutathione 99.6 6.9E-16 1.5E-20 101.0 7.4 65 12-77 1-70 (70)
59 cd03186 GST_C_SspA GST_N famil 99.6 3.9E-15 8.6E-20 105.4 11.2 105 89-203 2-106 (107)
60 cd03184 GST_C_Omega GST_C fami 99.6 5.1E-15 1.1E-19 107.7 11.6 120 90-216 2-123 (124)
61 cd03196 GST_C_5 GST_C family, 99.6 4.5E-15 9.8E-20 106.6 11.1 110 86-203 2-114 (115)
62 cd03038 GST_N_etherase_LigE GS 99.6 1.4E-15 3.1E-20 103.1 7.7 67 11-79 14-84 (84)
63 KOG2903 Predicted glutathione 99.6 3.2E-15 7E-20 117.5 8.1 207 3-216 36-298 (319)
64 cd03043 GST_N_1 GST_N family, 99.6 7.4E-15 1.6E-19 96.9 7.8 66 9-75 6-73 (73)
65 cd00570 GST_N_family Glutathio 99.6 1E-14 2.2E-19 94.5 8.0 70 5-75 1-71 (71)
66 cd03198 GST_C_CLIC GST_C famil 99.6 4E-14 8.6E-19 103.6 10.7 109 102-215 8-133 (134)
67 cd03201 GST_C_DHAR GST_C famil 99.6 5.8E-14 1.3E-18 101.7 11.1 106 105-216 14-120 (121)
68 cd03188 GST_C_Beta GST_C famil 99.6 3E-14 6.6E-19 101.7 9.3 104 90-204 2-114 (114)
69 cd03054 GST_N_Metaxin GST_N fa 99.5 2.9E-14 6.2E-19 93.7 8.1 65 5-77 1-72 (72)
70 cd03203 GST_C_Lambda GST_C fam 99.5 6.5E-14 1.4E-18 101.4 9.9 116 87-214 1-119 (120)
71 cd03209 GST_C_Mu GST_C family, 99.5 1.2E-13 2.6E-18 100.1 10.0 109 90-209 2-112 (121)
72 cd03182 GST_C_GTT2_like GST_C 99.5 4.3E-13 9.3E-18 96.3 11.7 104 87-200 1-117 (117)
73 cd03189 GST_C_GTT1_like GST_C 99.5 4.2E-13 9.2E-18 96.7 11.5 103 85-198 2-119 (119)
74 cd03191 GST_C_Zeta GST_C famil 99.5 1.8E-13 3.9E-18 99.0 9.3 109 89-207 2-120 (121)
75 cd03177 GST_C_Delta_Epsilon GS 99.5 2.6E-13 5.7E-18 97.8 10.0 105 90-204 2-110 (118)
76 cd03210 GST_C_Pi GST_C family, 99.5 3.4E-13 7.3E-18 98.4 9.6 110 90-209 3-115 (126)
77 cd03187 GST_C_Phi GST_C family 99.5 4.1E-13 8.9E-18 96.4 9.3 106 90-204 2-118 (118)
78 cd03208 GST_C_Alpha GST_C fami 99.5 5.5E-13 1.2E-17 98.7 10.1 108 90-208 3-117 (137)
79 cd03178 GST_C_Ure2p_like GST_C 99.4 2.4E-13 5.1E-18 97.1 7.1 105 90-204 1-112 (113)
80 cd03180 GST_C_2 GST_C family, 99.4 1.3E-12 2.7E-17 92.6 10.6 100 90-200 2-110 (110)
81 cd03181 GST_C_EFB1gamma GST_C 99.4 5.9E-13 1.3E-17 96.4 8.9 110 91-208 2-118 (123)
82 cd03200 GST_C_JTV1 GST_C famil 99.4 1.2E-12 2.5E-17 91.0 8.7 96 71-197 1-96 (96)
83 cd03207 GST_C_8 GST_C family, 99.4 1.2E-12 2.7E-17 91.9 7.0 98 97-206 4-102 (103)
84 cd03195 GST_C_4 GST_C family, 99.4 3.6E-12 7.7E-17 91.4 9.4 104 89-205 2-112 (114)
85 cd03183 GST_C_Theta GST_C fami 99.4 3.3E-12 7.1E-17 93.0 8.8 104 91-204 2-120 (126)
86 cd03206 GST_C_7 GST_C family, 99.3 5.8E-12 1.3E-16 88.0 7.5 71 119-200 30-100 (100)
87 PF00043 GST_C: Glutathione S- 99.3 1.8E-11 3.8E-16 84.5 8.3 71 119-198 25-95 (95)
88 PF13410 GST_C_2: Glutathione 99.2 4.7E-11 1E-15 77.6 7.2 68 118-193 2-69 (69)
89 cd03204 GST_C_GDAP1 GST_C fami 99.2 7E-11 1.5E-15 83.8 8.5 76 117-200 24-111 (111)
90 cd03179 GST_C_1 GST_C family, 99.2 4E-11 8.7E-16 84.2 7.2 95 90-195 2-105 (105)
91 cd03079 GST_N_Metaxin2 GST_N f 99.2 5.1E-11 1.1E-15 78.0 7.1 60 11-77 15-74 (74)
92 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.1E-10 2.4E-15 78.0 7.5 72 3-75 8-79 (79)
93 cd03192 GST_C_Sigma_like GST_C 99.2 2.5E-10 5.4E-15 80.2 9.5 94 90-194 2-104 (104)
94 KOG3027 Mitochondrial outer me 99.2 1.6E-09 3.5E-14 82.9 14.2 170 12-197 33-248 (257)
95 PRK10638 glutaredoxin 3; Provi 99.1 2.4E-10 5.2E-15 77.1 7.6 73 1-75 1-74 (83)
96 cd03194 GST_C_3 GST_C family, 99.1 4E-10 8.6E-15 80.7 8.8 73 119-205 38-113 (114)
97 cd00299 GST_C_family Glutathio 99.1 1.8E-10 3.9E-15 79.7 6.7 92 95-194 2-100 (100)
98 PF14497 GST_C_3: Glutathione 99.1 1.8E-10 3.9E-15 80.3 6.5 96 87-196 2-99 (99)
99 cd03202 GST_C_etherase_LigE GS 99.0 8.3E-10 1.8E-14 80.3 7.7 68 120-196 56-123 (124)
100 cd03029 GRX_hybridPRX5 Glutare 99.0 1.9E-09 4.1E-14 70.6 8.0 71 4-75 2-72 (72)
101 cd03193 GST_C_Metaxin GST_C fa 99.0 1.6E-09 3.5E-14 73.8 7.0 68 122-195 19-88 (88)
102 cd03078 GST_N_Metaxin1_like GS 98.9 1.3E-08 2.8E-13 66.9 8.1 59 11-77 14-72 (73)
103 cd03027 GRX_DEP Glutaredoxin ( 98.8 1.5E-08 3.2E-13 66.6 7.0 68 4-72 2-70 (73)
104 KOG3028 Translocase of outer m 98.8 3.2E-07 6.9E-12 74.9 14.9 170 12-196 16-233 (313)
105 cd03197 GST_C_mPGES2 GST_C fam 98.8 4E-08 8.6E-13 72.8 8.2 67 121-196 78-145 (149)
106 PRK10329 glutaredoxin-like pro 98.8 2.7E-08 5.9E-13 66.7 6.7 62 4-66 2-63 (81)
107 PF14834 GST_C_4: Glutathione 98.8 1.8E-07 3.8E-12 65.5 10.5 105 87-204 1-112 (117)
108 TIGR02196 GlrX_YruB Glutaredox 98.7 5E-08 1.1E-12 63.5 7.0 70 4-74 1-73 (74)
109 cd02976 NrdH NrdH-redoxin (Nrd 98.7 4.2E-08 9E-13 63.8 6.2 63 4-67 1-64 (73)
110 cd02066 GRX_family Glutaredoxi 98.7 7.8E-08 1.7E-12 62.2 7.3 69 4-73 1-70 (72)
111 cd03205 GST_C_6 GST_C family, 98.7 1.5E-07 3.4E-12 65.2 8.3 67 117-194 32-98 (98)
112 cd03211 GST_C_Metaxin2 GST_C f 98.7 3.9E-08 8.5E-13 71.6 5.2 72 118-195 53-126 (126)
113 cd03418 GRX_GRXb_1_3_like Glut 98.6 4E-07 8.7E-12 59.8 7.3 71 4-75 1-73 (75)
114 cd03212 GST_C_Metaxin1_3 GST_C 98.6 2.8E-07 6.1E-12 68.1 7.2 70 119-196 61-134 (137)
115 PRK11200 grxA glutaredoxin 1; 98.5 7E-07 1.5E-11 60.3 7.7 75 4-79 2-84 (85)
116 TIGR02181 GRX_bact Glutaredoxi 98.5 5.9E-07 1.3E-11 59.7 6.8 71 5-76 1-72 (79)
117 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.4E-07 9.4E-12 59.3 6.0 57 5-62 1-57 (72)
118 COG0695 GrxC Glutaredoxin and 98.5 9.9E-07 2.1E-11 58.9 7.4 69 4-73 2-73 (80)
119 TIGR02200 GlrX_actino Glutared 98.5 5.2E-07 1.1E-11 59.4 5.8 64 4-68 1-67 (77)
120 PF00462 Glutaredoxin: Glutare 98.4 4.9E-07 1.1E-11 56.8 4.2 59 5-64 1-60 (60)
121 TIGR02183 GRXA Glutaredoxin, G 98.4 2.6E-06 5.6E-11 57.7 7.6 75 5-79 2-83 (86)
122 TIGR02189 GlrX-like_plant Glut 98.3 5E-06 1.1E-10 57.9 8.6 71 3-74 8-82 (99)
123 cd03419 GRX_GRXh_1_2_like Glut 98.3 5.2E-06 1.1E-10 55.3 8.1 72 4-76 1-76 (82)
124 PHA03050 glutaredoxin; Provisi 98.3 7E-06 1.5E-10 58.0 8.2 69 3-72 13-88 (108)
125 TIGR00365 monothiol glutaredox 98.1 2.4E-05 5.2E-10 54.2 7.4 71 3-74 12-88 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.0 3.9E-05 8.5E-10 51.2 8.1 71 5-76 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.0 3.3E-05 7.2E-10 52.7 7.5 71 3-74 8-84 (90)
128 PF10568 Tom37: Outer mitochon 97.8 0.00017 3.6E-09 47.0 7.3 55 12-74 13-71 (72)
129 PF04399 Glutaredoxin2_C: Glut 97.8 0.00031 6.6E-09 51.3 9.2 69 120-201 57-125 (132)
130 PRK12759 bifunctional gluaredo 97.7 0.00014 2.9E-09 63.5 8.1 70 1-72 1-79 (410)
131 cd03031 GRX_GRX_like Glutaredo 97.6 0.0003 6.4E-09 52.4 7.4 71 4-74 1-81 (147)
132 PRK10824 glutaredoxin-4; Provi 97.4 0.00071 1.5E-08 48.2 7.1 71 3-74 15-91 (115)
133 cd03199 GST_C_GRX2 GST_C famil 97.3 0.0012 2.7E-08 47.7 7.0 69 120-201 58-126 (128)
134 KOG1752 Glutaredoxin and relat 97.1 0.0064 1.4E-07 42.5 8.5 71 3-74 14-88 (104)
135 PTZ00062 glutaredoxin; Provisi 97.0 0.004 8.6E-08 49.0 7.4 71 3-74 113-189 (204)
136 COG4545 Glutaredoxin-related p 97.0 0.003 6.4E-08 40.7 5.4 64 1-65 1-77 (85)
137 cd02973 TRX_GRX_like Thioredox 96.9 0.004 8.6E-08 39.5 5.9 58 4-65 2-64 (67)
138 cd03036 ArsC_like Arsenate Red 96.8 0.0019 4.2E-08 45.8 4.2 33 5-37 1-33 (111)
139 cd02977 ArsC_family Arsenate R 96.8 0.0023 5E-08 44.8 4.2 32 5-36 1-32 (105)
140 KOG1147 Glutamyl-tRNA syntheta 96.7 0.00082 1.8E-08 59.1 2.0 115 60-201 44-159 (712)
141 PRK01655 spxA transcriptional 96.7 0.003 6.5E-08 46.2 4.5 32 5-36 2-33 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0057 1.2E-07 43.6 5.3 32 5-36 2-33 (115)
143 PRK10026 arsenate reductase; P 96.5 0.0045 9.8E-08 45.7 4.6 34 1-35 1-34 (141)
144 PRK12559 transcriptional regul 96.4 0.0098 2.1E-07 43.5 5.5 32 5-36 2-33 (131)
145 TIGR01617 arsC_related transcr 96.3 0.0065 1.4E-07 43.5 4.4 32 5-36 1-32 (117)
146 PRK13344 spxA transcriptional 96.3 0.012 2.5E-07 43.2 5.6 32 5-36 2-33 (132)
147 TIGR00412 redox_disulf_2 small 96.2 0.023 5E-07 37.2 6.3 54 5-64 3-60 (76)
148 cd03035 ArsC_Yffb Arsenate Red 96.0 0.012 2.6E-07 41.3 4.3 32 5-36 1-32 (105)
149 PF05768 DUF836: Glutaredoxin- 95.9 0.025 5.4E-07 37.6 5.4 55 4-61 1-57 (81)
150 cd03033 ArsC_15kD Arsenate Red 95.9 0.014 3E-07 41.5 4.4 32 4-35 1-32 (113)
151 cd03030 GRX_SH3BGR Glutaredoxi 95.7 0.063 1.4E-06 36.7 6.8 67 5-72 2-79 (92)
152 COG1393 ArsC Arsenate reductas 95.6 0.024 5.2E-07 40.5 4.4 32 4-35 2-33 (117)
153 TIGR00411 redox_disulf_1 small 95.5 0.059 1.3E-06 35.3 6.0 57 4-62 2-62 (82)
154 TIGR01616 nitro_assoc nitrogen 95.1 0.042 9.1E-07 39.9 4.4 32 4-35 2-33 (126)
155 PRK10853 putative reductase; P 95.1 0.044 9.5E-07 39.3 4.4 31 5-35 2-32 (118)
156 cd03034 ArsC_ArsC Arsenate Red 94.7 0.058 1.3E-06 38.2 4.2 31 5-35 1-31 (112)
157 TIGR00014 arsC arsenate reduct 94.5 0.065 1.4E-06 38.1 4.2 31 5-35 1-31 (114)
158 PHA02125 thioredoxin-like prot 94.4 0.15 3.2E-06 33.2 5.3 51 5-59 2-52 (75)
159 cd01659 TRX_superfamily Thiore 94.1 0.16 3.5E-06 30.3 4.9 54 5-59 1-59 (69)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 93.4 0.14 2.9E-06 34.7 3.8 58 4-65 15-77 (89)
161 PF11287 DUF3088: Protein of u 92.9 0.32 6.8E-06 34.2 5.1 68 12-79 23-108 (112)
162 COG0278 Glutaredoxin-related p 92.0 0.64 1.4E-05 32.0 5.5 71 4-75 16-93 (105)
163 PF13192 Thioredoxin_3: Thiore 91.7 0.93 2E-05 29.4 6.1 57 5-67 3-63 (76)
164 PF04908 SH3BGR: SH3-binding, 91.5 0.7 1.5E-05 32.0 5.5 71 1-73 1-86 (99)
165 PF03960 ArsC: ArsC family; I 87.7 0.84 1.8E-05 32.0 3.7 28 8-35 1-28 (110)
166 PF00085 Thioredoxin: Thioredo 81.3 13 0.00029 24.7 7.8 69 5-76 21-102 (103)
167 COG3019 Predicted metal-bindin 78.1 8.4 0.00018 28.3 5.5 76 3-78 26-104 (149)
168 PF11801 Tom37_C: Tom37 C-term 77.8 5.9 0.00013 30.2 5.0 38 127-168 113-153 (168)
169 KOG0911 Glutaredoxin-related p 77.8 5.4 0.00012 31.7 4.9 65 10-75 151-216 (227)
170 TIGR03143 AhpF_homolog putativ 76.8 7.2 0.00016 35.6 6.2 57 4-65 479-541 (555)
171 TIGR02187 GlrX_arch Glutaredox 76.3 10 0.00023 29.8 6.3 55 4-60 136-193 (215)
172 PRK15317 alkyl hydroperoxide r 75.2 4.2 9E-05 36.7 4.2 72 4-77 119-197 (517)
173 TIGR03140 AhpF alkyl hydropero 74.8 3.6 7.9E-05 37.1 3.7 71 4-76 120-197 (515)
174 cd02984 TRX_PICOT TRX domain, 72.9 24 0.00053 23.3 6.8 58 5-64 18-81 (97)
175 TIGR01295 PedC_BrcD bacterioci 72.6 21 0.00044 25.5 6.5 33 5-37 27-63 (122)
176 cd02949 TRX_NTR TRX domain, no 71.5 22 0.00049 23.7 6.3 58 5-64 17-80 (97)
177 cd02989 Phd_like_TxnDC9 Phosdu 67.6 29 0.00063 24.2 6.3 57 5-65 26-89 (113)
178 cd02963 TRX_DnaJ TRX domain, D 66.7 40 0.00086 23.3 7.6 57 5-63 28-91 (111)
179 PF09635 MetRS-N: MetRS-N bind 66.7 3.9 8.5E-05 29.3 1.6 27 53-79 35-63 (122)
180 cd02947 TRX_family TRX family; 65.4 32 0.00069 21.8 7.1 54 5-62 14-74 (93)
181 PF11417 Inhibitor_G39P: Loade 61.1 42 0.0009 21.6 6.2 37 65-103 4-42 (71)
182 cd02953 DsbDgamma DsbD gamma f 59.1 32 0.00069 23.2 5.2 52 5-58 15-77 (104)
183 PTZ00051 thioredoxin; Provisio 58.4 45 0.00098 22.0 5.8 57 5-63 22-83 (98)
184 cd02975 PfPDO_like_N Pyrococcu 57.6 21 0.00046 24.9 4.1 53 5-59 25-81 (113)
185 KOG1668 Elongation factor 1 be 56.8 9.5 0.00021 30.5 2.3 59 128-201 10-68 (231)
186 TIGR02187 GlrX_arch Glutaredox 55.2 46 0.001 26.1 6.1 54 4-59 22-83 (215)
187 KOG2824 Glutaredoxin-related p 52.7 24 0.00053 29.0 4.1 69 4-73 132-211 (281)
188 cd03003 PDI_a_ERdj5_N PDIa fam 50.1 70 0.0015 21.3 5.7 52 5-59 22-78 (101)
189 PRK09381 trxA thioredoxin; Pro 49.8 79 0.0017 21.4 6.9 58 5-64 25-88 (109)
190 PHA03075 glutaredoxin-like pro 48.3 33 0.00072 24.4 3.7 69 1-78 1-70 (123)
191 PF01323 DSBA: DSBA-like thior 47.0 39 0.00084 25.6 4.5 35 4-38 1-40 (193)
192 cd02956 ybbN ybbN protein fami 46.7 81 0.0018 20.6 6.7 57 5-63 16-78 (96)
193 PRK10996 thioredoxin 2; Provis 45.2 1.2E+02 0.0025 22.0 8.8 58 5-64 56-119 (139)
194 PF04134 DUF393: Protein of un 43.0 82 0.0018 21.7 5.3 69 7-77 1-77 (114)
195 cd02962 TMX2 TMX2 family; comp 42.9 1.4E+02 0.003 22.2 6.8 60 5-65 51-122 (152)
196 cd02994 PDI_a_TMX PDIa family, 42.4 1E+02 0.0022 20.5 5.7 52 5-59 20-77 (101)
197 cd02993 PDI_a_APS_reductase PD 41.6 1.1E+02 0.0024 20.8 6.1 54 4-58 24-83 (109)
198 cd03021 DsbA_GSTK DsbA family, 40.4 48 0.001 25.9 4.1 35 3-37 1-39 (209)
199 cd02959 ERp19 Endoplasmic reti 39.2 1.3E+02 0.0029 21.0 6.3 60 5-65 23-91 (117)
200 PTZ00102 disulphide isomerase; 39.0 2E+02 0.0044 25.3 8.3 73 5-79 53-139 (477)
201 TIGR01068 thioredoxin thioredo 38.6 1.1E+02 0.0024 19.8 8.3 53 5-59 18-74 (101)
202 cd02951 SoxW SoxW family; SoxW 38.6 1E+02 0.0022 21.6 5.2 16 5-20 18-33 (125)
203 TIGR02681 phage_pRha phage reg 35.6 43 0.00093 23.5 2.7 26 54-79 2-28 (108)
204 PRK10877 protein disulfide iso 35.2 82 0.0018 25.2 4.7 22 4-25 110-131 (232)
205 PRK09266 hypothetical protein; 34.9 68 0.0015 26.1 4.3 58 22-79 200-259 (266)
206 KOG0190 Protein disulfide isom 34.2 1.6E+02 0.0034 26.7 6.6 73 5-79 46-133 (493)
207 PF09413 DUF2007: Domain of un 33.9 50 0.0011 20.4 2.7 33 5-37 1-33 (67)
208 PF09868 DUF2095: Uncharacteri 33.0 31 0.00068 24.5 1.7 63 16-78 25-91 (128)
209 cd02996 PDI_a_ERp44 PDIa famil 32.9 1.2E+02 0.0025 20.5 4.7 56 5-62 22-89 (108)
210 PF15608 PELOTA_1: PELOTA RNA 32.7 1E+02 0.0022 21.4 4.1 31 4-34 57-87 (100)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 32.3 66 0.0014 24.8 3.7 22 4-25 80-101 (197)
212 cd02957 Phd_like Phosducin (Ph 31.1 1.5E+02 0.0032 20.3 5.0 57 5-66 28-91 (113)
213 PHA02278 thioredoxin-like prot 31.0 1.8E+02 0.0038 19.9 6.8 58 5-64 18-85 (103)
214 cd02954 DIM1 Dim1 family; Dim1 30.8 2E+02 0.0042 20.4 5.6 57 6-64 19-81 (114)
215 PF13728 TraF: F plasmid trans 30.7 1.7E+02 0.0037 23.1 5.8 52 5-58 124-188 (215)
216 cd03005 PDI_a_ERp46 PDIa famil 30.4 1.6E+02 0.0035 19.3 5.8 52 5-58 20-78 (102)
217 cd02997 PDI_a_PDIR PDIa family 30.0 1.6E+02 0.0036 19.3 6.3 53 5-59 21-81 (104)
218 cd03004 PDI_a_ERdj5_C PDIa fam 29.5 1.7E+02 0.0038 19.4 5.4 51 5-58 23-78 (104)
219 PF13098 Thioredoxin_2: Thiore 29.3 62 0.0013 22.0 2.8 21 4-24 8-28 (112)
220 cd03000 PDI_a_TMX3 PDIa family 28.9 1.8E+02 0.0039 19.4 5.9 53 5-59 19-78 (104)
221 cd03001 PDI_a_P5 PDIa family, 28.8 1.7E+02 0.0038 19.1 5.5 51 5-58 22-77 (103)
222 cd02972 DsbA_family DsbA famil 28.6 87 0.0019 20.0 3.4 22 5-26 1-22 (98)
223 PRK11657 dsbG disulfide isomer 28.6 89 0.0019 25.4 3.9 21 4-24 120-140 (251)
224 COG3011 Predicted thiol-disulf 28.3 2.4E+02 0.0053 20.7 7.1 76 3-78 8-87 (137)
225 TIGR01130 ER_PDI_fam protein d 27.8 3.5E+02 0.0076 23.5 7.9 73 5-79 22-110 (462)
226 cd02961 PDI_a_family Protein D 27.7 1.7E+02 0.0037 18.7 5.7 51 5-58 19-76 (101)
227 PF04564 U-box: U-box domain; 27.7 1.7E+02 0.0036 18.6 4.9 25 53-78 15-39 (73)
228 cd02987 Phd_like_Phd Phosducin 26.2 2.9E+02 0.0064 20.9 7.1 60 5-67 87-151 (175)
229 cd02948 TRX_NDPK TRX domain, T 26.0 2.1E+02 0.0045 19.1 8.0 57 5-64 21-84 (102)
230 PF12290 DUF3802: Protein of u 25.9 1.6E+02 0.0034 20.8 4.1 85 68-163 9-97 (113)
231 cd02978 KaiB_like KaiB-like fa 25.1 1.9E+02 0.0041 18.7 4.2 53 4-58 3-60 (72)
232 cd03006 PDI_a_EFP1_N PDIa fami 24.3 1.3E+02 0.0028 21.1 3.7 51 5-58 33-89 (113)
233 cd03025 DsbA_FrnE_like DsbA fa 24.0 1.5E+02 0.0032 22.3 4.3 32 4-35 2-39 (193)
234 cd02955 SSP411 TRX domain, SSP 23.9 2.8E+02 0.006 19.8 6.8 58 7-67 21-97 (124)
235 cd04911 ACT_AKiii-YclM-BS_1 AC 23.2 1.3E+02 0.0027 19.7 3.1 24 12-35 14-37 (76)
236 cd03002 PDI_a_MPD1_like PDI fa 23.0 2.4E+02 0.0052 18.7 5.7 53 4-58 21-79 (109)
237 PRK13949 shikimate kinase; Pro 22.9 1.4E+02 0.003 22.5 3.8 32 1-33 1-32 (169)
238 cd03022 DsbA_HCCA_Iso DsbA fam 22.5 1.3E+02 0.0029 22.5 3.8 32 5-36 1-36 (192)
239 TIGR01764 excise DNA binding d 22.4 1.4E+02 0.0031 16.4 3.1 23 53-75 26-48 (49)
240 PF03711 OKR_DC_1_C: Orn/Lys/A 22.3 45 0.00097 24.5 1.0 37 40-78 77-113 (136)
241 PTZ00443 Thioredoxin domain-co 21.5 4.2E+02 0.0092 21.1 11.0 71 5-78 56-139 (224)
242 PRK13947 shikimate kinase; Pro 21.0 1.5E+02 0.0034 21.8 3.8 31 1-32 1-31 (171)
243 cd02950 TxlA TRX-like protein 21.0 3.3E+02 0.0072 19.7 6.7 52 5-58 24-81 (142)
244 PRK03731 aroL shikimate kinase 20.7 1.7E+02 0.0036 21.7 3.9 32 1-32 1-32 (171)
245 cd02965 HyaE HyaE family; HyaE 20.6 1.8E+02 0.0039 20.4 3.7 59 5-66 31-98 (111)
246 PF12972 NAGLU_C: Alpha-N-acet 20.3 2.3E+02 0.0051 23.2 4.9 61 105-165 109-176 (267)
247 cd02999 PDI_a_ERp44_like PDIa 20.1 2.8E+02 0.0061 18.5 5.3 50 5-58 22-77 (100)
248 cd03024 DsbA_FrnE DsbA family, 20.0 1.3E+02 0.0029 22.8 3.3 33 5-37 1-41 (201)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=255.28 Aligned_cols=215 Identities=42% Similarity=0.745 Sum_probs=188.9
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcC-CC
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQ-NN 81 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~-~~ 81 (227)
+.++||+++.|||++|++++|.+|||+|+.+.+|+.++++.+++.||.++|||||+++|.+|.||..|++||++.++ ++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 45999999999999999999999999999999999999999999997777999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHH
Q 036834 82 PLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIV 160 (227)
Q Consensus 82 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~ 160 (227)
+++|.||.+|++.+.|.++++..+.......... .++..+.+.+++.+.|..+|+.|+.+++|+ +|+++++.|++
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~f----gG~~~G~vDi~ 163 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFF----GGETIGFVDIA 163 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCcCHhhhh
Confidence 8999999999999999999999776665555553 557888999999999999999999444999 99999999999
Q ss_pred HHHHhhhhHH-HHHhcCCCcc-CccchHHHHHHHHhhccccccccCCChhchhHHHHHHHHHH
Q 036834 161 FGVIGYWLPI-YEEAGSMQTH-TQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVHEFV 221 (227)
Q Consensus 161 l~~~l~~~~~-~~~~~~~~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (227)
+++.+.++.. .....+.... .+++|+|.+|.+|+.++++|++++++.+...++++++++..
T Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 164 IGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 9966555544 3343333333 28999999999999999999999999999999999987753
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=4e-38 Score=250.18 Aligned_cols=197 Identities=21% Similarity=0.319 Sum_probs=167.6
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCCC
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNNP 82 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~~ 82 (227)
++++||+++.||+|++|+++|+++|++|+.+.+++.+++++++++||.| +||+|+++|.+|+||.+|++||++++|+..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g-~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQ-SVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCC-CCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 3589999999999999999999999999999999988889999999997 999999999999999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHH
Q 036834 83 LLPQDPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFG 162 (227)
Q Consensus 83 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~ 162 (227)
|+|.++.+++.++.|+.++...+...............+...+.+.+.+..+|+.|+++ +|+ +|+++|+||++++
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~~l----~G~~~t~AD~~l~ 162 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEK-PYF----MSEEFSLVDCYLA 162 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccC-Ccc----cCCCccHHHHHHH
Confidence 99999999999999998877655433322222233455667788999999999999887 999 9999999999999
Q ss_pred HHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 163 VIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
+.+.++. . .+.++....+|+|++|++++.+||+|++++...++
T Consensus 163 ~~~~~~~---~-~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 163 PLLWRLP---V-LGIELSGPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHHHHH---h-cCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 9987763 2 24444214789999999999999999999875543
No 3
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2.9e-35 Score=234.25 Aligned_cols=195 Identities=20% Similarity=0.192 Sum_probs=161.1
Q ss_pred CC-cceEEeccC--CChHHHHHHHHHHHcCCceEEEecCCCC---CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 1 MA-TEVKLLGIW--PSPFVFRVKVALQLKGVDYEYFEEDPFN---KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 1 M~-~~~~Ly~~~--~sp~~~~v~~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
|+ ++++||+++ .||+|++|+++|.++||+|+.+.+++.. ..++++++||.| +||+|+++|.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g-~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTR-RVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCC-CCCEEEECCEEEecHHHHHHHH
Confidence 55 579999976 7999999999999999999999999763 568999999998 9999999999999999999999
Q ss_pred HhhcCCCC---CCCCCHHHHHHHHHHHHHhhchhhHHHHHH----hc-c--ChhhHHHHHHHHHHHHHHHHHhhhhCCCc
Q 036834 75 EETWQNNP---LLPQDPYERATVRFWAKFVDDLFWNKAFAA----FI-A--KGEAKEKIEKEVIEGLEKIDGAIKEKSSL 144 (227)
Q Consensus 75 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~l~~le~~L~~~~~y 144 (227)
+++++++. ++|.++.+++++++|+.++...+....... ++ . .....+...+++.+.+..+|++|++++.|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998765 999999999999999999876565432111 11 1 12234667788899999999999864379
Q ss_pred ccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 145 FNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 145 l~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
+ +|+ +|+|||++++.+.++. .. +.++ .|+|.+|++|+.+||+|++++++.+.
T Consensus 160 l----~G~-~TlADi~l~~~l~~~~---~~-~~~~----~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 160 L----FGE-WCIADTDLALMLNRLV---LH-GDEV----PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred e----eCC-ccHHHHHHHHHHHHHH---Hc-CCCC----CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 9 996 9999999999988763 22 4432 29999999999999999998876553
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.6e-35 Score=234.44 Aligned_cols=195 Identities=19% Similarity=0.284 Sum_probs=160.3
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
|. ||||+++.||+++||+++|.++||+|+.+.++.. +.+++++++||.| +||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MV--VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFG-QVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred Cc--eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCC-CCCeEEECCEEEEehHHHHHHHHHH
Confidence 55 8999999999999999999999999999998875 5788999999997 9999999999999999999999999
Q ss_pred cCCC--CCCCCCHHHHHHHHHHHHHhhchhhHHHH----HHhcc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCc
Q 036834 78 WQNN--PLLPQDPYERATVRFWAKFVDDLFWNKAF----AAFIA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSL 144 (227)
Q Consensus 78 ~~~~--~l~p~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~y 144 (227)
+++. +|+|.++.+++++++|+.+..+.+..... ..++. .....+....++.+.++.+|+.|+++ +|
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~ 156 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN-RY 156 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC-Cc
Confidence 9743 59999999999999999988775543221 11111 11234556678899999999999887 99
Q ss_pred ccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCC
Q 036834 145 FNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPS 206 (227)
Q Consensus 145 l~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+ +|+++|+||+++++.+.++...... ...+ +++|+|.+|++++.++|+|++++..
T Consensus 157 l----~Gd~~t~ADi~~~~~~~~~~~~~~~--~~~~-~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 157 L----GGDEFTLADLTHMPGMRYIMNETSL--SGLV-TSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred c----cCCCCCHHHHHHHHHHHHHHhcccc--HHHH-hcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9 9999999999999988776321111 1223 7899999999999999999987653
No 5
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.1e-33 Score=225.16 Aligned_cols=195 Identities=22% Similarity=0.332 Sum_probs=158.1
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
|+ +|||+.+.| +++|++++|.++|++|+.+.+++. +.++++++.||.| +||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g-~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFG-VVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHHHH
Confidence 66 899997655 699999999999999999999875 5678999999997 9999999999999999999999999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHHHHhhchhhHHHHHH----hcc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCc
Q 036834 78 WQN--NPLLPQDPYERATVRFWAKFVDDLFWNKAFAA----FIA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSL 144 (227)
Q Consensus 78 ~~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~y 144 (227)
+++ ++|+|.++.++++++.|+.+....+.+.+... .+. ..+..+...+++.+.++.+|+.|+++ +|
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~ 155 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKS-KY 155 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCC-cc
Confidence 975 35999999999999999998776554433221 221 12234556788899999999999887 99
Q ss_pred ccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 145 FNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 145 l~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
+ +|+++|+||+++++.+.++.. .......+ ..+|+|.+|++++.++|+++++++..
T Consensus 156 l----~G~~~s~ADi~l~~~~~~~~~--~~~~~~~~-~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 156 L----AGDFVSLADLAHLPFTEYLVG--PIGKAYLI-KDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred c----cCCCcCHHHHHHHHHHHHHhc--ccchhhhh-ccCchHHHHHHHHHcChHHHHHHHHh
Confidence 9 999999999999998766521 11011112 67999999999999999999987653
No 6
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=3.1e-33 Score=220.56 Aligned_cols=193 Identities=20% Similarity=0.348 Sum_probs=157.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeeHHHHHHHHHhhcCCCCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI-HGEKPINESLTILEYIEETWQNNPL 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (227)
++||+++.||++++|+++|+++||+|+.+.++.....+++.+.||.| +||+|+ ++|.+|+||.+|++||++++++++|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g-~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLG-KVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCcc-CCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999998876677888899997 999998 5789999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhHHHHHHhc---c----ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcch
Q 036834 84 LPQDPYERATVRFWAKFVDDLFWNKAFAAFI---A----KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGF 156 (227)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~ 156 (227)
+|.++.+++++++|..+..+.+......... . .....+...+++.+.|+.+|++|+++ + + +|+++|+
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~-l----~Gd~~t~ 153 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDG-T-L----KTDTVNL 153 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccC-c-c----cCCCcCH
Confidence 9999999999999988876644322211111 1 12233556778999999999999877 7 9 9999999
Q ss_pred hHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 157 LDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 157 aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
||+++++.+.++.... . +.... .++|+|.+|++++.+||+|+++.+..
T Consensus 154 ADi~l~~~l~~~~~~~-~-~~~~~-~~~p~l~~~~~~i~~rp~~~~~~~~~ 201 (202)
T PRK10357 154 ATIAIACAVGYLNFRR-V-APGWC-VDRPHLVKLVENLFQRESFARTEPPK 201 (202)
T ss_pred HHHHHHHHHHHHHhcc-c-Ccchh-hcChHHHHHHHHHhcChhhhhcCCCC
Confidence 9999999988763211 1 11112 67999999999999999999988764
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=7.5e-34 Score=223.84 Aligned_cols=190 Identities=17% Similarity=0.323 Sum_probs=157.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC----CChhhhhhCCCCCcccEEE-eCCeeeeeHHHHHHHHHhhcC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN----KSPKLLESNPIHKKVPVLI-HGEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yL~~~~~ 79 (227)
|+|||.+.| ++++++++|+++||+|+.+.+++.. ..++++++||.| +||+|+ ++|.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g-~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKG-QVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCC-CCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 7999999999999999999998752 457899999997 999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhhchhhHHHHHHhccC--hhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcch
Q 036834 80 NNPLL-PQDPYERATVRFWAKFVDDLFWNKAFAAFIAK--GEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGF 156 (227)
Q Consensus 80 ~~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~ 156 (227)
+++++ |.++.++++++.|+.+..+.+.+.+...+... ....+...+.+.+.|+.+|+.|+++ +|| +|+++|+
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~s~ 153 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE-QWI----CGQRFTI 153 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC-Cee----eCCCCcH
Confidence 77766 66788999999999988776665544433321 2223556778999999999999987 999 9999999
Q ss_pred hHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 157 LDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 157 aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
||+++++.+.++. .. +.+. ..+|+|.+|++++.++|+|++++.+.
T Consensus 154 ADi~l~~~~~~~~---~~-~~~~--~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 154 ADAYLFTVLRWAY---AV-KLNL--EGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred HhHHHHHHHHHhh---cc-CCCc--ccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 9999999987763 22 4443 77999999999999999999987653
No 8
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=208.76 Aligned_cols=195 Identities=25% Similarity=0.451 Sum_probs=166.7
Q ss_pred CcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC----CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 2 ATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF----NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 2 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
+.+++||.++.|..++|||++|++|||+|+.+.|++. +...+|.+.||++ +||+|++||.+|+||.||++||+++
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~-kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPME-KVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchh-hCCeEEECCEEeehHHHHHHHHHhc
Confidence 3589999999999999999999999999999999875 3566899999997 9999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhc---cCh---hhHHHHHHHHHHHHHHHHHhhhhC-CCcccccCC
Q 036834 78 WQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFI---AKG---EAKEKIEKEVIEGLEKIDGAIKEK-SSLFNSAAG 150 (227)
Q Consensus 78 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~~le~~L~~~-~~yl~~~~~ 150 (227)
+|+++|+|.|+..|+.++.+...+.+.+.+-.....+ +.+ ....-+...+.+.+..||.+|..+ |.|- +
T Consensus 82 ~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkyc----v 157 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYC----V 157 (217)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcc----c
Confidence 9999999999999999999999988877755333222 222 224555667888999999999874 5899 9
Q ss_pred CCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 151 GESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 151 G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
||++|+||+++.+.++... .+ ..++ ..||-+.+..+.+...|.|+...++.
T Consensus 158 GDevtiADl~L~pqv~nA~---rf-~vdl--~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 158 GDEVTIADLCLPPQVYNAN---RF-HVDL--TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred Cceeehhhhccchhhhhhh---hc-cccC--CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 9999999999999988773 22 5565 88999999999999999999877653
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=3.9e-33 Score=221.17 Aligned_cols=191 Identities=26% Similarity=0.460 Sum_probs=157.6
Q ss_pred EEeccCCChHHHHHHHHHHHcCCceEEEecCCC----CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCC
Q 036834 6 KLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF----NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNN 81 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (227)
+||+++.||++++||++|.++||+|+.+.++.. +..++++++||.| +||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQG-LVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCC-cCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 3567899999998 99999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHhhchhhHH----HHHHhcc----C-hhhHHHHHHHHHHHHHHHHHhhhhC-CCcccccCCC
Q 036834 82 PLLPQDPYERATVRFWAKFVDDLFWNK----AFAAFIA----K-GEAKEKIEKEVIEGLEKIDGAIKEK-SSLFNSAAGG 151 (227)
Q Consensus 82 ~l~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~----~-~~~~~~~~~~~~~~l~~le~~L~~~-~~yl~~~~~G 151 (227)
.|+|.++.+++++++|+.++...+... +...+.. . ....+...+.+.+.|+.||++|+++ |+|| +|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l----~G 155 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFC----VG 155 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEe----eC
Confidence 799999999999999999886545432 1112211 1 1123334567899999999999864 3799 99
Q ss_pred CCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 152 ESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 152 ~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
+++|+|||++++.+.++. .. +..+ ++||+|++|+++|.+||+|+++.++.
T Consensus 156 ~~~T~ADi~~~~~l~~~~---~~-~~~~--~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 156 DTPTLADLCLVPQVYNAE---RF-GVDL--TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CCCCHHHHHHHHHHHHHH---Hc-CCCc--ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 999999999999988763 22 3333 78999999999999999999988754
No 10
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1.5e-32 Score=219.72 Aligned_cols=195 Identities=19% Similarity=0.245 Sum_probs=159.0
Q ss_pred cCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCC---CCCCCC
Q 036834 10 IWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQN---NPLLPQ 86 (227)
Q Consensus 10 ~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~---~~l~p~ 86 (227)
...||+|+||+++|.++||+|+.+.+|+.+++++|+++||.| +||+|+++|.+|+||.+|++||+++|+. +++.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g-~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGT-HPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCC-CCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 467999999999999999999999999998899999999997 9999999999999999999999999964 446666
Q ss_pred CHHHHHHHHHHHHHhhchhhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhh-----------------CCCccccc
Q 036834 87 DPYERATVRFWAKFVDDLFWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKE-----------------KSSLFNSA 148 (227)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~-----------------~~~yl~~~ 148 (227)
++..++... .++..+..++.. .+...+...+++.+.|..||+.|++ +++||
T Consensus 95 ~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~--- 163 (236)
T TIGR00862 95 HPESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFL--- 163 (236)
T ss_pred CHHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcc---
Confidence 665544321 122333222222 2333455667789999999999973 23999
Q ss_pred CCCCCcchhHHHHHHHhhhhHHH-HHhcCCCccCccchHHHHHHHHhhccccccccCCChhchhHHHHHHH
Q 036834 149 AGGESIGFLDIVFGVIGYWLPIY-EEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVH 218 (227)
Q Consensus 149 ~~G~~~t~aDi~l~~~l~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (227)
.|+++|+|||++++.+.++... ....++++. +++|+|.+|++++.++++|+++++..+.+...++.+.
T Consensus 164 -~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~-~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 164 -DGDELTLADCNLLPKLHIVKVVAKKYRNFDIP-AEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVA 232 (236)
T ss_pred -cCCccchhhHHHHHHHHHHHHHHHHHhCcCcc-ccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHh
Confidence 9999999999999999998654 234477765 8999999999999999999999999999999998873
No 11
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-33 Score=219.58 Aligned_cols=185 Identities=28% Similarity=0.468 Sum_probs=160.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC--CCChhhhhhCCCCCcccEEEeCCe-eeeeHHHHHHHHHhhcCCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF--NKSPKLLESNPIHKKVPVLIHGEK-PINESLTILEYIEETWQNN 81 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~~g~-~l~es~~I~~yL~~~~~~~ 81 (227)
++||+++.||+|++|+++|.++|++|+.+.++.. +.+++++.+||.| +||+|+++|. +|+||.+|++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~g-kVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLG-KVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCC-CCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999997 5889999999998 9999998665 8999999999999999877
Q ss_pred CCCCCCHH---HHHHHHHHHHHhhchhhHHHHHHhcc--------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCC
Q 036834 82 PLLPQDPY---ERATVRFWAKFVDDLFWNKAFAAFIA--------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAG 150 (227)
Q Consensus 82 ~l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~ 150 (227)
+|+|.++. +++.+..|+.+....+.+.+...... .....+...+.+...+..+|..|+++ +|+ +
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~ 154 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG-PYL----A 154 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC-Ccc----c
Confidence 69998885 78888899999887777776665443 24456777888999999999999997 999 9
Q ss_pred CCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccccc
Q 036834 151 GESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIK 201 (227)
Q Consensus 151 G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
|+++|+||+++++.+.++. .. +... +.+|+|.+|++|+.++|+++
T Consensus 155 G~~~tiAD~~~~~~~~~~~---~~-~~~~--~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 155 GDRFTIADIALAPLLWRLA---LL-GEEL--ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCCCCHHHHHHHHHHHHhh---hc-Cccc--ccChHHHHHHHHHHcCCchh
Confidence 9999999999999988862 22 4333 67999999999999999965
No 12
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-33 Score=223.25 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=151.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEe-----CC--eeeeeHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIH-----GE--KPINESLTILEYI 74 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~-----~g--~~l~es~~I~~yL 74 (227)
+|||+.+ +|++++|+++|+++||+|+.+.+++. +..++++++||.| +||+|++ +| .+|+||.+|++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~g-kVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNN-KIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCC-CCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999887 78999999999999999999999875 3478999999998 9999997 45 4799999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHH-hcc------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccc
Q 036834 75 EETWQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAA-FIA------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNS 147 (227)
Q Consensus 75 ~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~ 147 (227)
+++++ .+.|.++.+++++++|+.+..+.+.+..... .+. .....+....++.+.+..+|++|+++ +|+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l-- 154 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS-PWL-- 154 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC-ccc--
Confidence 99986 3778899999999999999877655433211 111 12334556677889999999999887 999
Q ss_pred cCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCC
Q 036834 148 AAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPS 206 (227)
Q Consensus 148 ~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+|+++|+|||++++.+.... .. +... ..+|+|.+|++++.+||+|++++..
T Consensus 155 --~Gd~~t~ADi~l~~~~~~~~---~~-~~~~--~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 155 --GGENYSIADIACWPWVNAWT---RQ-RIDL--AMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred --cCCCCCHHHHHHHHHHHHHh---hc-CCcc--hhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999988764432 12 3333 7899999999999999999887653
No 13
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=7.2e-32 Score=213.36 Aligned_cols=193 Identities=15% Similarity=0.195 Sum_probs=146.5
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhh--------hhCCCCCcccEEEeCCeeeeeHHHHHH
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLL--------ESNPIHKKVPVLIHGEKPINESLTILE 72 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~L~~~g~~l~es~~I~~ 72 (227)
|+++++|||++.++++++||++|+++||+|+.+.++. .. +++. ..||.| +||+|+++|.+|+||.+|++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~g-~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPFE-QVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCCC-CCCEEEECCEEEecHHHHHH
Confidence 8888999999999999999999999999999987753 22 2332 479998 99999999999999999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhC-CCcccccCCC
Q 036834 73 YIEETWQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEK-SSLFNSAAGG 151 (227)
Q Consensus 73 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~yl~~~~~G 151 (227)
||+++++ +.+.+..++..++.....+.+ +...+.....-.....+...+.+.+.+..||+.|+++ ++|+ +|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l----~G 149 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQD-IHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYF----VG 149 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee----eC
Confidence 9999997 456665555555443333222 2222222111112223445678899999999999864 3799 99
Q ss_pred CCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 152 ESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 152 ~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
+++|+||+++++.+.++.. ..+.++ ++||+|.+|++|+.++|+|++++.++..
T Consensus 150 d~~T~AD~~l~~~~~~~~~---~~~~~l--~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 150 DNLTYADLAVFNLYDDIET---KYPNSL--KNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred CcccHHHHHHHHHHHHHHH---hChhhh--ccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 9999999999998877632 113333 7899999999999999999999987764
No 14
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=4.7e-31 Score=215.33 Aligned_cols=189 Identities=24% Similarity=0.306 Sum_probs=150.5
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCCCCCCCCHHH
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNNPLLPQDPYE 90 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (227)
..||+|+|++++|+++||+|+.+.+++.+++++++++||.| +||+|+++|.+|+||.+|++||+++++++.+. ++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~G-kVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEG-KVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCC-CCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHH
Confidence 34999999999999999999999999988899999999997 99999998999999999999999999876664 5677
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHH
Q 036834 91 RATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPI 170 (227)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~ 170 (227)
++.++.++.. .+...+.. ....+...+++.+.+..||+.|+++|+|+ +|+++|+|||++++.+.++..
T Consensus 148 ra~i~~~l~~-------~~~~~~~~-~~~~~~~~~~l~~~l~~LE~~L~~~g~yl----~Gd~~SlADi~l~p~L~~l~~ 215 (265)
T PLN02817 148 KASVGSKIFS-------TFIGFLKS-KDPGDGTEQALLDELTSFDDYIKENGPFI----NGEKISAADLSLGPKLYHLEI 215 (265)
T ss_pred HHHHHHHHHH-------HHHHHhcc-CCcchHHHHHHHHHHHHHHHHHhcCCCee----CCCCCCHHHHHHHHHHHHHHH
Confidence 8887765421 22122222 11122334567788999999998644999 999999999999999987754
Q ss_pred HH-HhcCCCccCccchHHHHHHHHhhccccccccCCChhchhHHHH
Q 036834 171 YE-EAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFR 215 (227)
Q Consensus 171 ~~-~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (227)
.. ...++++. +.+|+|.+|++++.++|+|+++.+..+.......
T Consensus 216 ~~~~~~~~~i~-~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~ 260 (265)
T PLN02817 216 ALGHYKNWSVP-DSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWR 260 (265)
T ss_pred HHHHhcCCCcc-ccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhH
Confidence 22 22245544 7899999999999999999999998776655443
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.98 E-value=3.3e-31 Score=216.95 Aligned_cols=194 Identities=21% Similarity=0.292 Sum_probs=154.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHc------CCceEEEecCCC---CCChhhhhhCCCCCcccEEEeC----CeeeeeHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLK------GVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHG----EKPINESLTI 70 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~----g~~l~es~~I 70 (227)
.++||+.+ ||+|+||+++|+++ |++|+.+.+++. +..++++++||.| +||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~G-kVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNS-KIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCC-CCCEEEeCCCCCCeEEEcHHHH
Confidence 58999975 99999999999997 999999999875 3578999999997 99999974 3689999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHH---HHHhcc--C---hhhHHHHHHHHHHHHHHHHHhhhhCC
Q 036834 71 LEYIEETWQNNPLLPQDPYERATVRFWAKFVDDLFWNKA---FAAFIA--K---GEAKEKIEKEVIEGLEKIDGAIKEKS 142 (227)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~--~---~~~~~~~~~~~~~~l~~le~~L~~~~ 142 (227)
++||+++++ +|+|.++.+++++++|+.+....+ ... ...++. . ....+....++.+.|+.||++|+++
T Consensus 122 l~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~- 197 (264)
T PRK11752 122 LLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH- 197 (264)
T ss_pred HHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 999999997 389999999999999999876632 111 111111 1 1234555677889999999999987
Q ss_pred CcccccCCCCCcchhHHHHHHHhhhhHHHH---HhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 143 SLFNSAAGGESIGFLDIVFGVIGYWLPIYE---EAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 143 ~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~---~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
+|| +|+++|+|||++++.+.++.... .....+. ..+|+|.+|+++|.++|+|+++...+..
T Consensus 198 ~fl----~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~--~~~P~L~~w~~rv~~rPs~k~~~~~~~~ 261 (264)
T PRK11752 198 EYI----AGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDV--GSYKHVQRWAKEIAERPAVKRGRIVNRT 261 (264)
T ss_pred CCC----CCCccCHHHHHHHHHHHHHhhccccccccccCc--ccCHHHHHHHHHHHhCHHHHHHHhcccc
Confidence 999 99999999999999887663211 0001122 7799999999999999999998876654
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=8.4e-31 Score=208.40 Aligned_cols=188 Identities=20% Similarity=0.295 Sum_probs=147.7
Q ss_pred ccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCCCCCCCCH
Q 036834 9 GIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNNPLLPQDP 88 (227)
Q Consensus 9 ~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~ 88 (227)
.+..||+|+||+++|+++|++|+.+.+++.+++++|+++||.| +||+|+++|.+|+||.+|++||++++++..+ .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G-~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQG-KVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCC-CCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCH
Confidence 3556999999999999999999999999988888999999997 9999999999999999999999999987655 356
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhh-CCCcccccCCCCCcchhHHHHHHHhhh
Q 036834 89 YERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKE-KSSLFNSAAGGESIGFLDIVFGVIGYW 167 (227)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~yl~~~~~G~~~t~aDi~l~~~l~~ 167 (227)
.+++.++..+. ..+...+.. ....+...+.+.+.|..+|+.|++ +++|+ +|+++|+||+++++.+.+
T Consensus 93 ~~~a~i~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~fl----~Gd~~T~ADi~l~~~~~~ 160 (213)
T PLN02378 93 AEFASVGSNIF-------GTFGTFLKS-KDSNDGSEHALLVELEALENHLKSHDGPFI----AGERVSAVDLSLAPKLYH 160 (213)
T ss_pred HHHHHHHHHHH-------HHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHhcCCCCCc----CCCCCchhhHHHHHHHHH
Confidence 66776654322 222222222 112234456778889999999984 23999 999999999999999887
Q ss_pred hHHHH-HhcCCCccCccchHHHHHHHHhhccccccccCCChhchhH
Q 036834 168 LPIYE-EAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLP 212 (227)
Q Consensus 168 ~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 212 (227)
+.... ...+++.. +.+|+|.+|++++.++|+++++++.......
T Consensus 161 l~~~~~~~~~~~~~-~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~ 205 (213)
T PLN02378 161 LQVALGHFKSWSVP-ESFPHVHNYMKTLFSLDSFEKTKTEEKYVIS 205 (213)
T ss_pred HHHHHHHhcCCCch-hHhHHHHHHHHHHhcCCCeecccCChHHHHH
Confidence 75422 22233333 7899999999999999999999988776554
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.5e-30 Score=204.56 Aligned_cols=198 Identities=25% Similarity=0.390 Sum_probs=166.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcC-
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQ- 79 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~- 79 (227)
.++||+++.|+.|++|.+++.++|++|+.+.++.. +.+++|+.+||.| +||+|+++|..++||.+|+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~-kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLG-KVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCC-CCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999977664 7999999999998 999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhchhhHHH-HHH-hcc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccC
Q 036834 80 NNP-LLPQDPYERATVRFWAKFVDDLFWNKA-FAA-FIA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAA 149 (227)
Q Consensus 80 ~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~ 149 (227)
... ++|.+..+++.+++|+.+..+.+.+.. .+. +.. ..........++.+.++.+|+.|.++ .|+
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~-~yl---- 155 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ-VYL---- 155 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC-Ccc----
Confidence 333 999999999999999999888777663 221 111 34567888999999999999999998 999
Q ss_pred CCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhch
Q 036834 150 GGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESL 210 (227)
Q Consensus 150 ~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~ 210 (227)
.|+++|+||+.+.+.+..+.. ... +.... .++|++.+|++++.++|++++..+.....
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~-~~~-~~~~~-~~~p~v~~W~~~~~~~P~~~e~~~~~~~~ 213 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQG-KFA-TEKDF-EKYPKVARWYERIQKRPAYEEANEKGAAP 213 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhH-hhh-hhhhh-hhChHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 999999999999999888742 111 11222 88999999999999999988766544443
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=4.3e-29 Score=197.96 Aligned_cols=179 Identities=18% Similarity=0.201 Sum_probs=137.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeeHHHHHHHHHhhcCCCCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI-HGEKPINESLTILEYIEETWQNNPL 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (227)
||||+++.||+|+||+++|+++||+|+.+.++...... ....||.| +||+|+ ++|.+|+||.+|++||+++|+++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~~-~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQK-QVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCCc-ccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999887653222 25789987 999995 7899999999999999999987544
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhHHHHHHhcc-------Ch---------------------hhHHHHHHHHHHHHHHHH
Q 036834 84 LPQDPYERATVRFWAKFVDDLFWNKAFAAFIA-------KG---------------------EAKEKIEKEVIEGLEKID 135 (227)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------~~~~~~~~~~~~~l~~le 135 (227)
.+ ..++.++.|+.+....+...+...+.. .. ...+...+++++.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 256778888877655443332221110 00 011355778999999999
Q ss_pred HhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccccc
Q 036834 136 GAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIK 201 (227)
Q Consensus 136 ~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
++|+ + +|+ +|+++|+||+++++.+.++.. ..+. ..+|+|.+|++||.+||++.
T Consensus 156 ~~L~-~-~~l----~G~~~s~ADi~l~~~l~~~~~---~~~~----~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 156 PLIV-K-PNA----VNGELSTDDIHLFPILRNLTL---VKGI----EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHhc-C-ccc----cCCCCCHHHHHHHHHHhccee---ecCC----CCCHHHHHHHHHHHHHhCCC
Confidence 9996 4 999 999999999999999988742 1122 33699999999999999874
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=2.1e-27 Score=188.34 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=133.0
Q ss_pred EEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeeHHHHHHHHHhhcCCCCCC
Q 036834 6 KLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI-HGEKPINESLTILEYIEETWQNNPLL 84 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l~ 84 (227)
|||++..||+|+|||++|.++|++|+.+.++.... ....+.||.| +||+|+ ++|.+|+||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~g-~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGAK-QVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCCC-CcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 69999999999999999999999999987755432 2347899997 999998 78999999999999999999764343
Q ss_pred CCCHHHHHHHHHHHHHhhchhhHHHHHHhcc-----------------Chh-----------hHHHHHHHHHHHHHHHHH
Q 036834 85 PQDPYERATVRFWAKFVDDLFWNKAFAAFIA-----------------KGE-----------AKEKIEKEVIEGLEKIDG 136 (227)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-----------~~~~~~~~~~~~l~~le~ 136 (227)
|. .++.++.|+.+....+...+...+.. ..+ ..+.....+++.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 35566777766554333222111110 000 014566788999999999
Q ss_pred hhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccch-HHHHHHHHhhcccccc
Q 036834 137 AIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFP-AIAEWTTKFVNHPVIK 201 (227)
Q Consensus 137 ~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~~~~~ 201 (227)
+|+++ +|+ +|+ +|+||+++++.+.++. ...+. .+| +|.+|++||++++++.
T Consensus 156 ~L~~~-~~l----~g~-~TiADi~l~~~l~~~~---~~~~~-----~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 156 LIDGP-NAV----NGE-LSEDDILVFPLLRNLT---LVAGI-----NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHhCc-ccc----CCC-CCHHHHHHHHHhcCee---eecCC-----CCChHHHHHHHHHHHHhCCC
Confidence 99988 999 875 9999999999998873 21121 245 9999999999998763
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.7e-27 Score=182.04 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=159.4
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCC
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQN 80 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~ 80 (227)
|+ .+||+|++..+++..+|+++++.|++|+...+...+.-+......|+| ++|+|..||..|.||.+|++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfg-qlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFG-QLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCC-CCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 55 799999999999999999999999999999988765434444557987 999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhcc---C---hhhHH-HHHHHHHHHHHHHHHhhhhCC-CcccccCCCC
Q 036834 81 NPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIA---K---GEAKE-KIEKEVIEGLEKIDGAIKEKS-SLFNSAAGGE 152 (227)
Q Consensus 81 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~l~~le~~L~~~~-~yl~~~~~G~ 152 (227)
|.|.++.++++++.+.+.+.+ +...+....+. . ....+ .......+.+..+++.|..++ .|| +||
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D-~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgfl----vGd 150 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKD-FRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFL----VGD 150 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhh-HHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCee----ecC
Confidence 999999999999999999888 45553333332 1 11112 456677889999999998543 799 999
Q ss_pred CcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 153 SIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 153 ~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
++|+||+.++..+..+... . ..... ..+|+|.++.+++.++|.++++++++..
T Consensus 151 ~lT~aDl~i~e~l~~l~~~--~-~~~~~-~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 151 KLTWADLVIAEHLDTLEEL--L-DPSAL-DHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred cccHHHHHHHHHHHHHHHh--c-Cchhh-ccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 9999999999998877432 1 23322 6789999999999999999999988754
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=170.11 Aligned_cols=204 Identities=19% Similarity=0.256 Sum_probs=149.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhc-C
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETW-Q 79 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~-~ 79 (227)
.++||.++.|--+++||+++++|||.|+...|++. +..++|..+||.| .||||++|..+|.++..|++|+++++ +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~g-evPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGG-EVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCC-CCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999987 6899999999987 99999999999999999999999999 4
Q ss_pred CCCCCCCCH-HHHHHHH---HHHH------Hhhc-----hh-----hHHHH---HHhc-----------c----------
Q 036834 80 NNPLLPQDP-YERATVR---FWAK------FVDD-----LF-----WNKAF---AAFI-----------A---------- 115 (227)
Q Consensus 80 ~~~l~p~~~-~~~a~~~---~~~~------~~~~-----~~-----~~~~~---~~~~-----------~---------- 115 (227)
+..|.|+-. .+..++. +.++ +..+ .+ .+... +... +
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 556777411 1111111 1111 1110 00 01111 0000 0
Q ss_pred --------------ChhhHHHHHHHHHHHHHHHHHhhhhC---CCcccccCCCCCcchhHHHHHHHhhhhHHHHHh-cCC
Q 036834 116 --------------KGEAKEKIEKEVIEGLEKIDGAIKEK---SSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEA-GSM 177 (227)
Q Consensus 116 --------------~~~~~~~~~~~~~~~l~~le~~L~~~---~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~-~~~ 177 (227)
+.....+....+.+.|+.+|.-|..+ ..|| +|+.+|+||+.+.+.|+++....-. .-|
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL----~G~efslADVsLg~~LhRL~~Lg~e~~yw 260 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWL----CGCEFSLADVSLGATLHRLKFLGLEKKYW 260 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceee----ccccchHHHHHHHHHHHHHHHcccHHHhc
Confidence 11223445666788888888888773 1799 9999999999999999999653211 012
Q ss_pred CccCccchHHHHHHHHhhccccccccCCChhchhHHH
Q 036834 178 QTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFF 214 (227)
Q Consensus 178 ~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~ 214 (227)
.. ...|+|..|+.|+.+|++|+++++..-.+..+.
T Consensus 261 ~~--gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~ 295 (325)
T KOG4420|consen 261 ED--GSRPNLESYFERVRRRFSFRKVLGDIFNILRFR 295 (325)
T ss_pred cc--CCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Confidence 21 578999999999999999999999877766643
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.8e-22 Score=152.59 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=161.3
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCCCCCCCCHHH
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNNPLLPQDPYE 90 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (227)
..||+|+++.+.|.++|++|.++.||...++++++.+.|.+ ++|+|..++..++||..|.++|+++++.+++---.+.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~-~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGG-KPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCC-CCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 46999999999999999999999999999999999999976 99999999999999999999999999876532111223
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhccChh-hHHHHHHHHHHHHHHHHHhhhh--CCCcccccCCCCCcchhHHHHHHHhhh
Q 036834 91 RATVRFWAKFVDDLFWNKAFAAFIAKGE-AKEKIEKEVIEGLEKIDGAIKE--KSSLFNSAAGGESIGFLDIVFGVIGYW 167 (227)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~--~~~yl~~~~~G~~~t~aDi~l~~~l~~ 167 (227)
.+.+ ...++..+..++..+.+ ..+.....+-..|..|+++|+. +|+|+ .||++|.|||.+.+-|+.
T Consensus 98 ~asa-------g~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl----~Gd~lt~aDcsLlPKL~~ 166 (221)
T KOG1422|consen 98 SASA-------GSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFL----DGDKLTLADCSLLPKLHH 166 (221)
T ss_pred HHhh-------HHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccc----cCCeeeeehhhhchhHHH
Confidence 2222 22255555555555444 5566677888899999999985 35999 999999999999999999
Q ss_pred hHHH-HHhcCCCccCccchHHHHHHHHhhccccccccCCChhchhHHHHHHHH
Q 036834 168 LPIY-EEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVHE 219 (227)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
+..+ ....+++++ +.+++|.+|+..+.++.+|..+++..+++...++.+..
T Consensus 167 i~va~k~yk~~~IP-~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~~ 218 (221)
T KOG1422|consen 167 IKVAAKHYKNFEIP-ASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVAK 218 (221)
T ss_pred HHHHHHHhcCCCCc-hhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhhh
Confidence 8764 455688887 89999999999999999999999999998888876543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.89 E-value=5.4e-22 Score=180.44 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=130.3
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHHhhcC
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~~~~~ 79 (227)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|.| +||+|++ +|.+|+||.+|++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~G-kVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKSG-SAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCCC-CCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 67 8999998885 7789999999999999864 25787 9999995 88999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHH
Q 036834 80 NNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDI 159 (227)
Q Consensus 80 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi 159 (227)
+..|+|.++.+++++++|+.+... +... ..+...++.||.+|+.+ +|| +|+++|+|||
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~-~~~~----------------~~l~~~L~~LE~~L~~r-tYL----vGd~lTLADI 122 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPT-FSSG----------------SEFENACEYVDGYLASR-TFL----VGYSLTIADI 122 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhh-cccH----------------HHHHHHHHHHHHHhccC-Cee----cCCCCCHHHH
Confidence 878999999999999999998765 2110 13566889999999988 999 9999999999
Q ss_pred HHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccc
Q 036834 160 VFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPV 199 (227)
Q Consensus 160 ~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
++++.+..+.. ...+.... ..+|+|.+|++++.++|+
T Consensus 123 aL~~~L~~~~~--~~~~~~~~-~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 123 AIWSGLAGSGQ--RWESLRKS-KKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHHhhhh--hhhccccc-ccCHHHHHHHHHHHhCCC
Confidence 99998765411 11122222 789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=6.5e-20 Score=121.83 Aligned_cols=74 Identities=39% Similarity=0.678 Sum_probs=70.9
Q ss_pred EeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCC
Q 036834 7 LLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNN 81 (227)
Q Consensus 7 Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (227)
||+++.||+|+|+|++|+++||+|+.+.++..+..+++.+.||.+ +||+|+++|.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~-~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKG-KVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTS-BSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccc-cceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999888899999999997 99999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.79 E-value=6.7e-19 Score=116.17 Aligned_cols=73 Identities=33% Similarity=0.491 Sum_probs=69.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||.| +||+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYG-TVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999999888889999999997 99999999999999999999999864
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.78 E-value=7.2e-19 Score=116.08 Aligned_cols=70 Identities=29% Similarity=0.455 Sum_probs=65.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++||+++.||+|++|+++|+++|++|+.+.+++. ++.++++++||.| +||+|+++|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g-~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTG-EVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998874 4678899999997 99999999999999999999985
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.78 E-value=1e-18 Score=115.69 Aligned_cols=73 Identities=67% Similarity=1.111 Sum_probs=68.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCC-CCcccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPI-HKKVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++.+.||. + ++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~-~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHK-KIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCC-CCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999999888888899999995 6 99999999999999999999999864
No 28
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.78 E-value=1.4e-18 Score=118.39 Aligned_cols=70 Identities=27% Similarity=0.306 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCC
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNN 81 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (227)
..||||+|+|++|++|||+|+.+.+|+.+++++|+++||.| +||+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g-~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGT-QPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCC-CCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 56999999999999999999999999999999999999997 99999999999999999999999998654
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=2.1e-18 Score=115.09 Aligned_cols=73 Identities=26% Similarity=0.296 Sum_probs=65.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEe--CCeeeeeHHHHHHHHHhhc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIH--GEKPINESLTILEYIEETW 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~--~g~~l~es~~I~~yL~~~~ 78 (227)
++||+++.||+|++++++|.++||+|+.+.++... ..+++++.||.+ +||+|++ +|..++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKV-QVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCC-cccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999887543 467899999997 9999997 4689999999999999874
No 30
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.76 E-value=4.3e-18 Score=111.80 Aligned_cols=69 Identities=32% Similarity=0.500 Sum_probs=64.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYI 74 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL 74 (227)
++||+++.||+|+|++++|+++|++|+.+.++..+..+++.+.||.| +||+|++ +|..|+||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~-~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKG-TVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCC-CCCEEEECCCcEEecHHHHHHhh
Confidence 48999999999999999999999999999999987788999999997 9999998 489999999999996
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.75 E-value=5.2e-18 Score=112.23 Aligned_cols=71 Identities=28% Similarity=0.366 Sum_probs=65.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
++||+++.||+|++++++|+++|++|+.+.+++. +..+++.+.||.| +||+|+++|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 3568999999997 999999999999999999999974
No 32
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.9e-17 Score=121.32 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=130.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeeHHHHHHHHHhhcCCCCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI-HGEKPINESLTILEYIEETWQNNPL 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (227)
|+||-|.+||||.|+|++...+|||++....+.++.......++. ++||+|+ ++|..+.||..|++|+++..+++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 689999999999999999999999999998887765555555655 5899999 6899999999999999999876433
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhHHHHHH-----------------hccChh-----------hHHHHHHHHHHHHHHHH
Q 036834 84 LPQDPYERATVRFWAKFVDDLFWNKAFAA-----------------FIAKGE-----------AKEKIEKEVIEGLEKID 135 (227)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~l~~le 135 (227)
-++ .+..++.|..-+.+......... |..+++ .......++...|+.++
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 322 23445556555554322222221 111111 23555778888999999
Q ss_pred HhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccc
Q 036834 136 GAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKE 202 (227)
Q Consensus 136 ~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~ 202 (227)
.++... .-+ - ..+++-|+.+|++|+.+.. ..|... -.++..|+.+|.+...|.-
T Consensus 156 ~Li~~~-s~~----n-~~l~~ddi~vFplLRnlt~---v~gi~w----ps~v~dy~~~msektqV~L 209 (215)
T COG2999 156 KLIVGP-SAV----N-GELSEDDILVFPLLRNLTL---VAGIQW----PSRVADYRDNMSEKTQVNL 209 (215)
T ss_pred HHhcCc-chh----c-cccchhhhhhhHHhcccee---cccCCC----cHHHHHHHHHHHHhhCcch
Confidence 988776 433 3 4699999999999998843 334443 2589999999998877653
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.74 E-value=4e-18 Score=112.60 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=66.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
++||+++.|++|+++|++|+++|++|+.+.++..+..+++...||.| +||+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFG-QLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCC-CCCEEEECCEEEEcHHHHHHHHhc
Confidence 79999999999999999999999999999998765566788999997 999999999999999999999976
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.74 E-value=1e-17 Score=111.38 Aligned_cols=72 Identities=40% Similarity=0.552 Sum_probs=66.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
++||+++.||+|++++++|+++|++|+.+.++.. +..+++.+.||.| +||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~-~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFG-QIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988875 4578899999997 9999999999999999999999863
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.74 E-value=1.4e-17 Score=110.85 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=66.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC---CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN---KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.+.||.| +||+|+++|.+|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFG-KVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCC-CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998753 457899999997 99999999999999999999999864
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.73 E-value=1.4e-17 Score=114.19 Aligned_cols=73 Identities=30% Similarity=0.421 Sum_probs=67.6
Q ss_pred CcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeC-CeeeeeHHHHHHHHH
Q 036834 2 ATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHG-EKPINESLTILEYIE 75 (227)
Q Consensus 2 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yL~ 75 (227)
+.+++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||.+ +||+|+++ |..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~-~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQG-KVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCC-CcCEEEECCCCEEECHHHHHHhhC
Confidence 46799999999999999999999999999999999877777899999997 99999976 899999999999985
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.72 E-value=2.8e-17 Score=110.69 Aligned_cols=73 Identities=29% Similarity=0.460 Sum_probs=66.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeC---CeeeeeHHHHHHHHHhhc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHG---EKPINESLTILEYIEETW 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~---g~~l~es~~I~~yL~~~~ 78 (227)
++||+++. |+|++++++|+++||+|+.+.+++. +.++++.+.||.+ +||+|+++ |..|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNG-RIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCC-CCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999999864 4678899999997 99999986 899999999999999987
Q ss_pred C
Q 036834 79 Q 79 (227)
Q Consensus 79 ~ 79 (227)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.72 E-value=3.1e-17 Score=108.89 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=65.4
Q ss_pred EEeccCCChHHHHHHHHHHHcCCceEEEecCCC--CCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHHh
Q 036834 6 KLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF--NKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIEE 76 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~~ 76 (227)
+||+++.||++++++++|+++|++|+.+.++.. +..++++++||.| ++|+|++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~-~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLG-KVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCC-CCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999876 5788999999997 9999997 58999999999999976
No 39
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=3.1e-17 Score=108.11 Aligned_cols=70 Identities=36% Similarity=0.570 Sum_probs=64.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++||+++.||+|++++++|+++|++|+.+.++.. +..+++.+.||.+ ++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNG-EVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 4678899999997 99999999999999999999984
No 40
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.72 E-value=1.4e-16 Score=116.10 Aligned_cols=123 Identities=37% Similarity=0.758 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhh
Q 036834 89 YERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWL 168 (227)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~ 168 (227)
.+++++++|+.++++.+.+.....+...+...+....++.+.++.||++|+++ +|+ +|+++|+|||++++.+.++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~t~ADi~l~~~~~~~ 76 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGK-PFF----GGDTIGYVDIALGSFLGWF 76 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCC-CCC----CCCCcchHHHHHHHHHHHH
Confidence 46899999999999888877766655444556677889999999999999887 999 9999999999999999887
Q ss_pred HHHHHhcCCCcc-CccchHHHHHHHHhhccccccccCCChhchhHHHHH
Q 036834 169 PIYEEAGSMQTH-TQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQ 216 (227)
Q Consensus 169 ~~~~~~~~~~~~-~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (227)
.......+.+.+ ...+|++.+|++++.++|+++++++..+..++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 77 RAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 544333233311 167999999999999999999999999888887664
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=3.4e-17 Score=108.08 Aligned_cols=70 Identities=34% Similarity=0.523 Sum_probs=65.3
Q ss_pred eEEeccCCChHHHHHHHHHHH--cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQL--KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~ 75 (227)
++||+++.||+|+++|++|.+ +|++|+.+.++..+..+++++.||.+ +||+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLG-KIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCC-CCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 89999999999877788999999997 9999984 8899999999999985
No 42
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.71 E-value=4.5e-17 Score=107.52 Aligned_cols=70 Identities=31% Similarity=0.409 Sum_probs=64.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++||+++.||++++++++|+++|++|+.+.++.. +..+++.+.||.| +||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~-~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNG-RVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCC-CCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 3568899999997 99999999999999999999984
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.71 E-value=2.6e-17 Score=108.34 Aligned_cols=71 Identities=24% Similarity=0.216 Sum_probs=64.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++...||.+ +||+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFG-QLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCC-CCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 334588899997 999999999999999999999974
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.71 E-value=4.2e-17 Score=107.04 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=61.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeC-CeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHG-EKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yL~~ 76 (227)
|+||+++.||+|+|+|++|.++|++|+.+.++... .....+.+|.+ +||+|+++ |..+.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~~-~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGAK-QVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCCC-ccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999888643 23445778987 99999975 8999999999999974
No 45
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.70 E-value=8.3e-17 Score=106.93 Aligned_cols=73 Identities=32% Similarity=0.484 Sum_probs=66.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~ 79 (227)
++||+++. +++++++++|+++|++|+.+.++.. ++.+++.+.||.+ +||+|+++|.+|+||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLG-KVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCC-CCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 5899999999999999999999874 5678899999997 999999999999999999999999864
No 46
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.70 E-value=7.8e-17 Score=106.19 Aligned_cols=70 Identities=36% Similarity=0.605 Sum_probs=64.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++||+++.|+++++++++|+++|++|+.+.++.. +..+++++.||.+ ++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQG-LVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999874 4678899999997 99999999999999999999985
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.70 E-value=6e-17 Score=106.89 Aligned_cols=70 Identities=36% Similarity=0.480 Sum_probs=63.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~ 75 (227)
++||+++.||+|++++++|.++|++|+.+.++.. +..+++.+.||.+ ++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAG-TVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCC-CCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998864 3567899999997 9999995 7889999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.69 E-value=1.2e-16 Score=106.54 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=65.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCCCCcccEEEeC-CeeeeeHHHHHHHHHhhcC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPIHKKVPVLIHG-EKPINESLTILEYIEETWQ 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yL~~~~~ 79 (227)
++||+++.| .+++++++|+++|++|+.+.++.. +..+++++.||.+ ++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~-~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKG-QVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCC-CCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 589999999999999999998875 3578999999997 99999986 8999999999999999875
No 49
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.69 E-value=5.4e-16 Score=123.07 Aligned_cols=182 Identities=17% Similarity=0.283 Sum_probs=120.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCC--
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNN-- 81 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~-- 81 (227)
+++||.|..||||.+||.+|.+.||+|+.++|++-.+.+- +.+.. +|||+|...|+.+.||.+|+.-|....+.+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eI--k~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEI--KWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhc--ccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 5899999999999999999999999999999998643221 22333 699999987778999999988774322110
Q ss_pred ------CCCCC-------------------------C----HHHHHHHHHHHHHhhchhhHHHHHHhcc-----------
Q 036834 82 ------PLLPQ-------------------------D----PYERATVRFWAKFVDDLFWNKAFAAFIA----------- 115 (227)
Q Consensus 82 ------~l~p~-------------------------~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------- 115 (227)
.++|. + -..+..-+.|-.|+++.+...+..-.|.
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 12330 1 1112233445555555433222221110
Q ss_pred -----------------------------------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHH
Q 036834 116 -----------------------------------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIV 160 (227)
Q Consensus 116 -----------------------------------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~ 160 (227)
+.......++.+...++.+-..|+.+++|+ +|++|++||++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~fl----GG~kPnLaDLs 322 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFL----GGKKPNLADLS 322 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCcc----CCCCCchhhhh
Confidence 011112245566667777777776655999 99999999999
Q ss_pred HHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhc
Q 036834 161 FGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVN 196 (227)
Q Consensus 161 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
+|++|.-+...... .+. -...+|..|+-+|++
T Consensus 323 vfGvl~sm~gc~af--kd~--~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 323 VFGVLRSMEGCQAF--KDC--LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhhHhhhhhHH--HHH--HhcchHHHHHHHHHH
Confidence 99999887544333 122 346799999999876
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.69 E-value=1.2e-16 Score=106.60 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=62.6
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeC----CeeeeeHHHHHHHHHhhc
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHG----EKPINESLTILEYIEETW 78 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~----g~~l~es~~I~~yL~~~~ 78 (227)
+++||+++.||+|++++++|.++||+|+.+.+++... ++ ...||.+ +||+|+++ |.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~~-~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSYK-KVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCCC-ccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 5899999999999999999999999999998876432 23 3669987 99999965 789999999999999864
No 51
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.9e-16 Score=124.41 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=155.6
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCc--eEEEecCCC--C----CCh------------------hhhhhCCCC-C--c
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVD--YEYFEEDPF--N----KSP------------------KLLESNPIH-K--K 53 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~--~~~~~v~~~--~----~~~------------------~~~~~~p~~-~--~ 53 (227)
+++.||..-.||++.|..++=++||++ .....+++. . ..+ -+..-.|.. | +
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 578999999999999999999999995 122222221 0 000 111112211 1 7
Q ss_pred ccEEEeC---CeeeeeHHHHHHHHHhhcC-----CCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhcc-ChhhHHHHH
Q 036834 54 VPVLIHG---EKPINESLTILEYIEETWQ-----NNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIA-KGEAKEKIE 124 (227)
Q Consensus 54 vP~L~~~---g~~l~es~~I~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 124 (227)
||||-|. ..+-.||..|++-+...+. ...|+|++. +.+++.+.+++.+.+.+.+.+.-+. .+++-+++.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~L--r~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEAL--RTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHH--HHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 8999873 2556899999999987663 245888764 8899999999888777776665444 678889999
Q ss_pred HHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHH----HHhcCCCccCccchHHHHHHHHhhccccc
Q 036834 125 KEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIY----EEAGSMQTHTQKFPAIAEWTTKFVNHPVI 200 (227)
Q Consensus 125 ~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~----~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
..+-+.|+.+|..|+++ .|| +|+++|-||+-||+.|.++..+ .+| +..-+ .+||+|..|+..+.+.|+|
T Consensus 208 ~~lF~~Ld~lE~~L~~~-ryl----~Gd~lTEAD~RLftTlvRFD~VYvgHFKC-N~~rI-~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 208 KKLFEALDKLEQILSER-RYL----TGDQLTEADIRLFTTLVRFDPVYVGHFKC-NLRRI-RDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred HHHHHHHHHHHHHhhcC-eee----ccccchHhhhhhhheeEeecceEEeeeec-ccchh-hcCchHHHHHHHHhcCccc
Confidence 99999999999999998 999 9999999999999999887421 122 22323 6799999999999999999
Q ss_pred cccCCChhchhHHHHHHH
Q 036834 201 KENLPSTESLLPFFRQVH 218 (227)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (227)
.++..-..-..+++.++.
T Consensus 281 ~~T~df~hIK~hYyrSh~ 298 (324)
T COG0435 281 AETVDFDHIKLHYYRSHT 298 (324)
T ss_pred ccccchhHhhhhheeccc
Confidence 999887776777766553
No 52
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.66 E-value=4.5e-16 Score=103.28 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=60.7
Q ss_pred eEEeccC-------CChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 5 VKLLGIW-------PSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
++||+++ .||+|++++++|+++|++|+.+.++.. +.||.| +||+|+++|.++.||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~g-~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPKG-KLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCCC-CCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899998 689999999999999999999888652 578987 9999999999999999999999998
Q ss_pred cC
Q 036834 78 WQ 79 (227)
Q Consensus 78 ~~ 79 (227)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 64
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.66 E-value=4e-16 Score=104.54 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=62.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhC-----CCCCcccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESN-----PIHKKVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+.+ |.| +||+|+++|.+|+||.||++||.+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g-~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQ-QVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCC-CCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 47999999999999999999999999999988752 3333333 576 99999999999999999999999987
Q ss_pred C
Q 036834 79 Q 79 (227)
Q Consensus 79 ~ 79 (227)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 54
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.66 E-value=4e-16 Score=105.29 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=62.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC----CChhhhhh-----CCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN----KSPKLLES-----NPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~----~~~~~~~~-----~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
.+|||+..++.|++++++|+++||+|+.+.+++.. ..+++... +|.| +||+|+++|.+|+||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g-~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFP-NLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCC-CCCEEEECCEEEeehHHHHHHHh
Confidence 37999999999999999999999999999998753 12444422 2987 99999999999999999999998
Q ss_pred hhc
Q 036834 76 ETW 78 (227)
Q Consensus 76 ~~~ 78 (227)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 55
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-15 Score=118.53 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=125.8
Q ss_pred eEEeccC-------CChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 5 VKLLGIW-------PSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
+-||.++ .||||.++-.+|...+|||+.+.-.+. ..+..| ++|.++-+|..+.||.-|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~G-~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRNG-TLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccCC-CcceEEeCCeeccccHHHHHHHHHH
Confidence 4567664 599999999999999999998855432 234556 9999999999999999999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHH----------------------------Hh----cc----------
Q 036834 78 WQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFA----------------------------AF----IA---------- 115 (227)
Q Consensus 78 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------~~----~~---------- 115 (227)
+.-+..+ .+.++++.+.....++.++...+.. .+ +.
T Consensus 118 f~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8633323 3334555544444444322222221 11 10
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHh
Q 036834 116 -KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKF 194 (227)
Q Consensus 116 -~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
..-..++..+.+.+.|..+++.|+++ +|| .|+++|-+|+++|+.|..+.......--++++.++|+|.+|++||
T Consensus 196 IG~f~~~Ei~ell~rDlr~i~~~Lg~K-kfl----fGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRI 270 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAISDYLGDK-KFL----FGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERI 270 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhCCC-ccc----cCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHH
Confidence 00123446667889999999999998 999 999999999999999987754111111134448899999999999
Q ss_pred hcc
Q 036834 195 VNH 197 (227)
Q Consensus 195 ~~~ 197 (227)
++.
T Consensus 271 r~~ 273 (281)
T KOG4244|consen 271 RKE 273 (281)
T ss_pred HHH
Confidence 863
No 56
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.65 E-value=4e-16 Score=103.74 Aligned_cols=70 Identities=36% Similarity=0.428 Sum_probs=58.9
Q ss_pred EEeccCCChHHHHHHHHHHHcCCceEEEecCCC---CCChhhhhhCCC-CCcccEEEeC-CeeeeeHHHHHHHHHh
Q 036834 6 KLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF---NKSPKLLESNPI-HKKVPVLIHG-EKPINESLTILEYIEE 76 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~-~~~vP~L~~~-g~~l~es~~I~~yL~~ 76 (227)
+|++++.+++++++|++|+++|++|+.+.+++. ++.+++.+.||. | +||+|+++ |.+|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g-~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFG-KVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSS-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccc-eeeEEEECCCCEEEcHHHHHHHhCC
Confidence 444444455899999999999999999999874 345999999999 8 99999998 9999999999999975
No 57
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.65 E-value=1.2e-15 Score=113.80 Aligned_cols=124 Identities=13% Similarity=0.207 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhh
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWL 168 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~ 168 (227)
.++.++.|++|....+.+.+...... .++..+....++.+.|+.+|+.|+++ +|+ +|+++|+|||++++.+.++
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-~yl----~Gd~~TlADi~l~~~l~~~ 78 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDR-RYL----LGDRLTEADIRLFTTLIRF 78 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccC-Cee----eCCCccHHHHHHHHHHHHH
Confidence 57889999999999888877665433 45567778889999999999999887 999 9999999999999998776
Q ss_pred HHHH-Hh--cCCCccCccchHHHHHHHHhhccccccccCCChhchhHHHHHHHH
Q 036834 169 PIYE-EA--GSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVHE 219 (227)
Q Consensus 169 ~~~~-~~--~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
.... .. .+...+ .++|+|.+|++++.++|+|++++...+...++++++++
T Consensus 79 ~~~~~~~~~~~~~~~-~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 79 DAVYVQHFKCNLKRI-RDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred HHHhhhhcccccchh-hhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 3211 11 022223 68999999999999999999999988888888888743
No 58
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.64 E-value=6.9e-16 Score=100.97 Aligned_cols=65 Identities=49% Similarity=0.691 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHcCCceEEEecCC----CCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHHhh
Q 036834 12 PSPFVFRVKVALQLKGVDYEYFEEDP----FNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIEET 77 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~~~ 77 (227)
.|||++|++++|+++|++|+...++. .+.++++.+.||.| +||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~-~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRG-KVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCe-EEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988833 35668999999997 9999997 889999999999999863
No 59
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.64 E-value=3.9e-15 Score=105.39 Aligned_cols=105 Identities=15% Similarity=0.240 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhh
Q 036834 89 YERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWL 168 (227)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~ 168 (227)
.++++++.|+.+++..+.+.+...+...++..+.....+.+.|..+|+.|+++ +|+ +|+++|+|||++++.+.++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHK-PYF----MSEEFSLVDCALAPLLWRL 76 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCC-Ccc----cCCCCcHHHHHHHHHHHHH
Confidence 47899999999999988877766655445566778889999999999999987 999 9999999999999998655
Q ss_pred HHHHHhcCCCccCccchHHHHHHHHhhcccccccc
Q 036834 169 PIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKEN 203 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~ 203 (227)
. ..+.++. ..+|+|.+|++++.+||+++++
T Consensus 77 ~----~~~~~~~-~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 77 P----ALGIELP-KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred H----HcCCCCc-ccchHHHHHHHHHHCCHHHHHh
Confidence 2 2255543 5799999999999999999875
No 60
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.63 E-value=5.1e-15 Score=107.74 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhh-CCCcccccCCCCCcchhHHHHHHHhhhh
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKE-KSSLFNSAAGGESIGFLDIVFGVIGYWL 168 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~yl~~~~~G~~~t~aDi~l~~~l~~~ 168 (227)
++++.+.|+.++.. +...+.+.+.. ++..+...+.+.+.|..+|+.|++ +++|+ +|+++|+||+++++.+.++
T Consensus 2 ~ra~~r~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl----~G~~~t~aDi~~~~~~~~~ 75 (124)
T cd03184 2 EKAQQKLLLERFSK-VVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFF----GGDSPGMVDYMIWPWFERL 75 (124)
T ss_pred hHHHHHHHHHHHhh-hhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCc----CCCCccHHHHHhhHHHHHH
Confidence 58899999999974 67777776665 666778888999999999999986 23999 9999999999999998877
Q ss_pred HHHHHhcCC-CccCccchHHHHHHHHhhccccccccCCChhchhHHHHH
Q 036834 169 PIYEEAGSM-QTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQ 216 (227)
Q Consensus 169 ~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (227)
.......+. ..+ +.+|+|++|+++|.++|++++++++.+...++++.
T Consensus 76 ~~~~~~~~~~~~~-~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 76 EALKLLLGYEFPL-DRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred HHHHhhccccCCc-ccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 544322111 112 78999999999999999999999999998888764
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.63 E-value=4.5e-15 Score=106.62 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHhhchhhHHHHHHhcc---ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHH
Q 036834 86 QDPYERATVRFWAKFVDDLFWNKAFAAFIA---KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFG 162 (227)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~ 162 (227)
.|+..++.+++|..+.+..+.+.+....+. ..+..+....++.+.+..+|++|+++ +|+ +|+++|+|||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~-~yl----~Gd~~tlADi~l~ 76 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQH-SYL----LGDKPSLADWAIF 76 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccC-Ccc----CCCCccHHHHHHH
Confidence 478899999999999999888888776554 22356777889999999999999987 999 9999999999999
Q ss_pred HHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccccccc
Q 036834 163 VIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKEN 203 (227)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~ 203 (227)
+.+.++... ...+... .++|+|.+|++++.++|+|+++
T Consensus 77 ~~l~~~~~~-~~~~~~~--~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 77 PFVRQFAHV-DPKWFDQ--SPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHh-hhcccCc--ccCHHHHHHHHHHHcChHHHhh
Confidence 988766422 1112222 7899999999999999999875
No 62
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.63 E-value=1.4e-15 Score=103.10 Aligned_cols=67 Identities=31% Similarity=0.515 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCC---hhhhhhCCCCCcccEEEeC-CeeeeeHHHHHHHHHhhcC
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKS---PKLLESNPIHKKVPVLIHG-EKPINESLTILEYIEETWQ 79 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yL~~~~~ 79 (227)
+.||+|+++|++|.++||+|+.+.++..... +++ +.||.+ +||+|+++ |..++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~-~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFY-TVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCc-eeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999998875322 233 789997 99999998 8999999999999999874
No 63
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.2e-15 Score=117.49 Aligned_cols=207 Identities=19% Similarity=0.234 Sum_probs=147.6
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCc----eEEEecCCCCCChhh------------------------------hhhC
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVD----YEYFEEDPFNKSPKL------------------------------LESN 48 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~------------------------------~~~~ 48 (227)
+++.||..-.|||+.|+.+.+++||+. +..+.--..+..-.| ....
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 468999999999999999999999994 222211000000000 0111
Q ss_pred C--CC-CcccEEEe---CCeeeeeHHHHHHHHHhhc---------CCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHh
Q 036834 49 P--IH-KKVPVLIH---GEKPINESLTILEYIEETW---------QNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAF 113 (227)
Q Consensus 49 p--~~-~~vP~L~~---~g~~l~es~~I~~yL~~~~---------~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (227)
| .| -+||||=| ...+-.||..|++.+...+ +.-.|+|.+ .+++++.+-.|+.+.+.+.+.+.-
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeec
Confidence 2 11 07999976 3466789999999999322 233477765 489999999998887777766554
Q ss_pred cc-ChhhHHHHHHHHHHHHHHHHHhhhhCC-CcccccCCCCCcchhHHHHHHHhhhhHHH----HHhcCCCccCccchHH
Q 036834 114 IA-KGEAKEKIEKEVIEGLEKIDGAIKEKS-SLFNSAAGGESIGFLDIVFGVIGYWLPIY----EEAGSMQTHTQKFPAI 187 (227)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~l~~le~~L~~~~-~yl~~~~~G~~~t~aDi~l~~~l~~~~~~----~~~~~~~~~~~~~p~l 187 (227)
+. .++.-+...+++-+.|+.+|..|+++. .|+ +|+++|-|||.|++.+.++..+ .++ ....++.+||+|
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~----~G~~LTeaDirLy~TiIRFD~VY~~hFKC-n~~~ir~~Yp~l 268 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFL----CGDTLTEADIRLYTTIIRFDEVYVQHFKC-NKKTIRDEYPNL 268 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEe----eccccchhheeeeeeEEeehhhhheeeec-chhhhhccCcHH
Confidence 43 677889999999999999999999972 277 9999999999999998877421 122 223333699999
Q ss_pred HHHHHHhhc-cccccccCCChhchhHHHHH
Q 036834 188 AEWTTKFVN-HPVIKENLPSTESLLPFFRQ 216 (227)
Q Consensus 188 ~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (227)
..|..++.. .|+|..+..-.--...++++
T Consensus 269 ~~~lk~iY~~~~~~~~Ttd~~hIk~~Y~~S 298 (319)
T KOG2903|consen 269 HNWLKNIYWNIPGFSSTTDFNHIKLHYYRS 298 (319)
T ss_pred HHHHHHHHhhccchhhccchhHHhhhhccc
Confidence 999999998 89999887654444444443
No 64
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.58 E-value=7.4e-15 Score=96.87 Aligned_cols=66 Identities=29% Similarity=0.437 Sum_probs=59.9
Q ss_pred ccCCChHHHHHHHHHHHcCCceEEEecCCCC--CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 9 GIWPSPFVFRVKVALQLKGVDYEYFEEDPFN--KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 9 ~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
....||++++++++|+++|++|+.+.++... ..+++.+.||.+ ++|+|+++|.+|+||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTG-KVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCC-cCCEEEECCEEEEcHHHHHHHhC
Confidence 4578999999999999999999999998753 568899999997 99999999999999999999984
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.58 E-value=1e-14 Score=94.48 Aligned_cols=70 Identities=41% Similarity=0.557 Sum_probs=62.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCCh-hhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSP-KLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|.+ ++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLG-KVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998764333 478889987 99999999999999999999984
No 66
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.56 E-value=4e-14 Score=103.59 Aligned_cols=109 Identities=10% Similarity=0.182 Sum_probs=86.7
Q ss_pred hchhhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhh--------------C-CCcccccCCCCCcchhHHHHHHHh
Q 036834 102 DDLFWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKE--------------K-SSLFNSAAGGESIGFLDIVFGVIG 165 (227)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~--------------~-~~yl~~~~~G~~~t~aDi~l~~~l 165 (227)
...+++.+..++.+ .++..+...+++...|+.+|.+|++ . ++|+ +|+++|+|||++++.+
T Consensus 8 ~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL----~Gd~fTlADi~l~p~L 83 (134)
T cd03198 8 GEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFL----DGDELTLADCNLLPKL 83 (134)
T ss_pred HHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCC----CCCCCCHHHHHHHHHH
Confidence 33467776666655 4566788889999999999999986 1 3799 9999999999999998
Q ss_pred hhhHHHH-HhcCCCccCccchHHHHHHHHhhccccccccCCChhchhHHHH
Q 036834 166 YWLPIYE-EAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFR 215 (227)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (227)
.++..+. ...++.++ ..+|+|.+|++++.+||+|+++++..+.++..++
T Consensus 84 ~~~~~~~~~~~g~~i~-~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 84 HIVKVVAKKYRNFEIP-ADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHHHHHHhhcCCCcc-ccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 8774321 11255544 7899999999999999999999999988877654
No 67
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.56 E-value=5.8e-14 Score=101.70 Aligned_cols=106 Identities=13% Similarity=0.275 Sum_probs=82.5
Q ss_pred hhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHH-HHhcCCCccCcc
Q 036834 105 FWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIY-EEAGSMQTHTQK 183 (227)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~-~~~~~~~~~~~~ 183 (227)
+.+.....+....+. ++..+.+.+.|..||..|+++++|| +|+++|+|||++++.+.++... ....++... +.
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl----~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~-~~ 87 (121)
T cd03201 14 IFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFI----NGEKISAVDLSLAPKLYHLEIALGHYKNWSVP-ES 87 (121)
T ss_pred HHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCcc----CCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCc-cc
Confidence 566666665553333 5667789999999999998533999 9999999999999988777542 222244443 78
Q ss_pred chHHHHHHHHhhccccccccCCChhchhHHHHH
Q 036834 184 FPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQ 216 (227)
Q Consensus 184 ~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (227)
+|+|.+|++++.+||+|+++++..++++..+++
T Consensus 88 ~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~~ 120 (121)
T cd03201 88 LTSVKSYMKALFSRESFVKTKAEKEDVIAGWAP 120 (121)
T ss_pred chHHHHHHHHHHCCchhhhcCCCHHHHHHHhcc
Confidence 999999999999999999999998888776653
No 68
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.55 E-value=3e-14 Score=101.69 Aligned_cols=104 Identities=18% Similarity=0.340 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccC---------hhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAK---------GEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIV 160 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~ 160 (227)
+++++++|+.+..+.+.+.+...+... +...+...+++.+.++.+|+.|+++ +|+ +|+++|+|||+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~l----~G~~~t~aDi~ 76 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGG-PYL----LGDRFSVADAY 76 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCC-Cee----eCCCcchHHHH
Confidence 478999999999888887765544331 2234566788999999999999877 999 99999999999
Q ss_pred HHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccC
Q 036834 161 FGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENL 204 (227)
Q Consensus 161 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
+++.+.++.. .+.+. .++|+|.+|++++.++|+|++++
T Consensus 77 ~~~~~~~~~~----~~~~~--~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 77 LFVVLRWAPG----VGLDL--SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHHhh----cCCCh--hhChHHHHHHHHHHhCHHhHhhC
Confidence 9999887632 24433 67999999999999999999864
No 69
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.55 E-value=2.9e-14 Score=93.74 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=57.6
Q ss_pred eEEeccC-------CChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 5 VKLLGIW-------PSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
++||.++ .||+|++++++|+++||+|+.+.++... .||.| +||+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~g-~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPTG-KLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCCc-ccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577776 8999999999999999999999887632 68987 9999999999999999999999874
No 70
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.54 E-value=6.5e-14 Score=101.35 Aligned_cols=116 Identities=19% Similarity=0.338 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhh--CCCcccccCCCCCcchhHHHHHHH
Q 036834 87 DPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKE--KSSLFNSAAGGESIGFLDIVFGVI 164 (227)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~yl~~~~~G~~~t~aDi~l~~~ 164 (227)
|+..|+.+++++.+... +.......+.. +.. .+++.+.++.||+.|++ +++|+ +| ++|+|||++++.
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~-~~~----~~~~~~~l~~Le~~L~~~~~~~fl----~G-~~tlADi~l~~~ 69 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIK-GDP----SAEAAAALDYIENALSKFDDGPFF----LG-QFSLVDIAYVPF 69 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCc----hHHHHHHHHHHHHHHHhcCCCCCc----CC-CccHHHHHHHHH
Confidence 46689999999988322 33333222222 111 23446678888888874 23999 99 999999999999
Q ss_pred hhhhHH-HHHhcCCCccCccchHHHHHHHHhhccccccccCCChhchhHHH
Q 036834 165 GYWLPI-YEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTESLLPFF 214 (227)
Q Consensus 165 l~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~ 214 (227)
+.++.. .....+.++. +++|+|.+|+++|.++|+|+++.++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~-~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 70 IERFQIFLSELFNYDIT-EGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHHHHhcCcccc-ccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 877643 2223355554 689999999999999999999999988887764
No 71
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.52 E-value=1.2e-13 Score=100.10 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccC--hhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhh
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAK--GEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYW 167 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~ 167 (227)
++++++.+++.+.+ +...+...++.. ....+.....+.+.+..||++|+++ +|+ +|+++|+||+++++.+.+
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~T~aDi~l~~~~~~ 75 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDR-PWF----AGDKITYVDFLLYEALDQ 75 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCC-CCc----CCCCccHHHHHHHHHHHH
Confidence 57888988888888 666666665542 2344556778899999999999887 999 999999999999999888
Q ss_pred hHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 168 LPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
+... +...+ ..+|+|.+|++++.++|+++++++++..
T Consensus 76 ~~~~----~~~~~-~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 76 HRIF----EPDCL-DAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred HHHh----Ccccc-ccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 7421 22223 7899999999999999999999887754
No 72
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.50 E-value=4.3e-13 Score=96.28 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHhhchhhHHHHHHhcc-------------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCC
Q 036834 87 DPYERATVRFWAKFVDDLFWNKAFAAFIA-------------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGES 153 (227)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~ 153 (227)
|+.+++.+++|+.+++..+.+.+...+.. .....+....++.+.|..||+.|+++ +|+ +|++
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~~l----~gd~ 75 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGS-PYV----AGDR 75 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc----cCCC
Confidence 46789999999999888888776654321 12335667788999999999999887 899 9999
Q ss_pred cchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccc
Q 036834 154 IGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVI 200 (227)
Q Consensus 154 ~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
+|+|||++++.+.++.. . +.++. ..+|+|.+|++++.++|++
T Consensus 76 ~t~aDi~l~~~~~~~~~---~-~~~~~-~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 76 FTIADITAFVGLDFAKV---V-KLRVP-EELTHLRAWYDRMAARPSA 117 (117)
T ss_pred CCHHHHHHHHHhHHHHh---c-CCCCc-cccHHHHHHHHHHHhccCC
Confidence 99999999999987632 2 44443 6799999999999999975
No 73
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.50 E-value=4.2e-13 Score=96.67 Aligned_cols=103 Identities=18% Similarity=0.303 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHhhchhhHHHHHHh-cc---C-----------hhhHHHHHHHHHHHHHHHHHhhhhCCCcccccC
Q 036834 85 PQDPYERATVRFWAKFVDDLFWNKAFAAF-IA---K-----------GEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAA 149 (227)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~---~-----------~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~ 149 (227)
|.++.+++++++|+.+..+.+.+.+...+ .. . ....+....++.+.|+.+|++|+++ +|+
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l---- 76 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKK-GYF---- 76 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccC-CCC----
Confidence 56888999999999999888887755332 11 1 1223445668999999999999987 999
Q ss_pred CCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccc
Q 036834 150 GGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHP 198 (227)
Q Consensus 150 ~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
+|+++|+|||++++.+.++. .. +.. + ..+|+|.+|++++.++|
T Consensus 77 ~Gd~~t~ADi~l~~~~~~~~---~~-~~~-~-~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 77 VGDKLTAADIMMSFPLEAAL---AR-GPL-L-EKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHH---Hc-Ccc-c-ccCchHHHHHHHHhcCC
Confidence 99999999999999888773 22 333 2 78999999999999986
No 74
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.49 E-value=1.8e-13 Score=99.00 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhc----c--C---hhhHHHHHHHHHHHHHHHHHhhhh-CCCcccccCCCCCcchhH
Q 036834 89 YERATVRFWAKFVDDLFWNKAFAAFI----A--K---GEAKEKIEKEVIEGLEKIDGAIKE-KSSLFNSAAGGESIGFLD 158 (227)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~----~--~---~~~~~~~~~~~~~~l~~le~~L~~-~~~yl~~~~~G~~~t~aD 158 (227)
.+++++++|+.++.+.+.+.....+. . . ....+.....+.+.|..+|+.|++ +++|| +|+++|+||
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l----~G~~~t~AD 77 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFC----FGDEPTLAD 77 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee----cCCcCCHHH
Confidence 46899999999998777654222111 1 1 112233456789999999999984 23799 999999999
Q ss_pred HHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCCh
Q 036834 159 IVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPST 207 (227)
Q Consensus 159 i~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
|++++.+.++. .. +.+. ..+|+|.+|++++.++|+|+++.+..
T Consensus 78 i~~~~~~~~~~---~~-~~~~--~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 78 ICLVPQVYNAR---RF-GVDL--SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHH---Hh-CCCc--ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 99999987763 22 4443 78999999999999999999987743
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.49 E-value=2.6e-13 Score=97.77 Aligned_cols=105 Identities=15% Similarity=0.256 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhcc----ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHh
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIA----KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIG 165 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l 165 (227)
+++++++|+.+..+.+.+.....++. .+...+...+++.+.+..+|+.|+++ +|+ +|+++|+||+++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~s~aDi~l~~~~ 76 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGS-DYV----AGDQLTIADLSLVATV 76 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccC-Cee----CCCCcCHHHHHHHHHH
Confidence 47889999999877777666554332 23456777889999999999999877 999 9999999999999999
Q ss_pred hhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccC
Q 036834 166 YWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENL 204 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
.++.. ..+.+. ..+|+|.+|+++|.++|+|++..
T Consensus 77 ~~~~~---~~~~~~--~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 77 STLEA---LLPLDL--SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHH---hcCCCh--hhCchHHHHHHHHHcccchHHHH
Confidence 88742 124443 67999999999999999999854
No 76
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.47 E-value=3.4e-13 Score=98.41 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccC-hhhHHHHHHHHHHHHHHHHHhhhhC--CCcccccCCCCCcchhHHHHHHHhh
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAK-GEAKEKIEKEVIEGLEKIDGAIKEK--SSLFNSAAGGESIGFLDIVFGVIGY 166 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~--~~yl~~~~~G~~~t~aDi~l~~~l~ 166 (227)
+++.++.++..+.+ +...+...++.. ....+.....+.+.|..||+.|+++ ++|+ +|+++|+||+++++.+.
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l----~G~~~T~ADi~l~~~~~ 77 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFI----VGDKISFADYNLFDLLD 77 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee----eCCCccHHHHHHHHHHH
Confidence 57888888887776 666666665543 3345566777899999999999852 3899 99999999999999988
Q ss_pred hhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChhc
Q 036834 167 WLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTES 209 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
++... +...+ ..+|+|.+|++++.++|+|+++++..+.
T Consensus 78 ~~~~~----~~~~~-~~~P~l~~~~~rv~~~p~v~~~~~~~~~ 115 (126)
T cd03210 78 IHLVL----APGCL-DAFPLLKAFVERLSARPKLKAYLESDAF 115 (126)
T ss_pred HHHHh----ChHhh-hcChHHHHHHHHHHhCcHHHHHHhCcCC
Confidence 87422 11223 7899999999999999999999876654
No 77
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.46 E-value=4.1e-13 Score=96.44 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHh----cc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAF----IA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLD 158 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aD 158 (227)
+++++.+|+.+....+.+.+.... +. .....+....++.+.++.+|++|+++ +|+ +|+++|+||
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~t~aD 76 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKS-KYL----AGDSFTLAD 76 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccC-ccc----CCCCccHHH
Confidence 477888999887776766654421 11 22334566788999999999999987 999 999999999
Q ss_pred HHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccC
Q 036834 159 IVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENL 204 (227)
Q Consensus 159 i~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
|++++.+.++... .. +.. + ..+|+|++|++++.++|++++++
T Consensus 77 i~l~~~~~~~~~~-~~-~~~-~-~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 77 LSHLPYLQYLMAT-PF-AKL-F-DSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHc-cc-hhh-h-hcCchHHHHHHHHHhCHHHHhhC
Confidence 9999998777421 11 111 2 67999999999999999998764
No 78
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.46 E-value=5.5e-13 Score=98.73 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccChhhHH-----HHHHHHHHHHHHHHHhhh--hCCCcccccCCCCCcchhHHHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAKGEAKE-----KIEKEVIEGLEKIDGAIK--EKSSLFNSAAGGESIGFLDIVFG 162 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~le~~L~--~~~~yl~~~~~G~~~t~aDi~l~ 162 (227)
+++.++.+++.+.+ +...+...++..++..+ -..+.+.+.|+.||++|+ ++ +|+ +|+++|+||++++
T Consensus 3 e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~-~~l----~G~~~T~ADi~l~ 76 (137)
T cd03208 3 ERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQ-DFL----VGNKLSRADIHLL 76 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Cee----eCCCCCHHHHHHH
Confidence 57888998888877 56666666654333222 223456789999999998 44 899 9999999999999
Q ss_pred HHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChh
Q 036834 163 VIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTE 208 (227)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
+.+.++... ....+ ..+|+|.+|++++.++|++++++.++.
T Consensus 77 ~~l~~~~~~----~~~~l-~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 77 EAILMVEEL----DPSLL-SDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHHHHHHh----chhhh-ccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 999887422 12223 789999999999999999999987655
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.45 E-value=2.4e-13 Score=97.06 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhc----c---ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFI----A---KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFG 162 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~ 162 (227)
+++++++|+.+....+.+.....+. . .+...+....++.+.++.+|+.|+++ +|+ +|+++|+|||+++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~t~aDi~l~ 75 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGR-DYL----AGDEYSIADIAIF 75 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccC-Ccc----cCCCCCeeeeeHH
Confidence 3678899999988877766543321 1 13345667788999999999999887 999 9999999999999
Q ss_pred HHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccC
Q 036834 163 VIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENL 204 (227)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
+.+.+.... +.... ..+|++.+|++++.++|++++++
T Consensus 76 ~~~~~~~~~----~~~~~-~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 76 PWVRRLEWI----GIDDL-DDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHHhc----cccch-hhchHHHHHHHHHhhCHHHHHhc
Confidence 998877422 33322 77999999999999999999864
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.45 E-value=1.3e-12 Score=92.64 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhcc---------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIA---------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIV 160 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~ 160 (227)
+++++++|+.+..+.+.+.+...+.. .....+...+++.+.|+.+|++|+++ +|+ +|+++|+|||+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~-~~l----~g~~~t~aDi~ 76 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGR-PYL----AGDRFTLADIP 76 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc----cCCCCCHHHHH
Confidence 47889999999888788776544321 12234567788999999999999987 999 99999999999
Q ss_pred HHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccc
Q 036834 161 FGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVI 200 (227)
Q Consensus 161 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
+++.+.... .. +... .++|+|.+|++++.++|+|
T Consensus 77 ~~~~~~~~~---~~-~~~~--~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 77 LGCSAYRWF---EL-PIER--PPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHH---Hc-cccc--ccCchHHHHHHHHHhCCCC
Confidence 998875432 22 2222 7899999999999999985
No 81
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.44 E-value=5.9e-13 Score=96.41 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhcc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHH
Q 036834 91 RATVRFWAKFVDDLFWNKAFAAFIA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGV 163 (227)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~ 163 (227)
++++++|+.++...+.+.+...+.. .....+...+++.+.|+.+|+.|+.+ +|+ +|+++|+||+++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~l----~G~~~siaDi~l~~ 76 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKR-TYL----VGERLTLADIFVAG 76 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccC-cee----ccCCccHHHHHHHH
Confidence 6788999999988888776544332 22345667888999999999999987 999 99999999999999
Q ss_pred HhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCCChh
Q 036834 164 IGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLPSTE 208 (227)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
.+.++.... .+...+ ..+|++.+|++++.++|+|++++++..
T Consensus 77 ~~~~~~~~~--~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 77 ALLLGFTYV--FDKEWR-AKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHHH--cCHHHH-HhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 988863211 122222 579999999999999999999887643
No 82
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.42 E-value=1.2e-12 Score=90.97 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCC
Q 036834 71 LEYIEETWQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAG 150 (227)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~ 150 (227)
++||.+.. .|+|+++.+++.++.|++.....+.. ....++.+.+..+|+.|+++ +|+ +
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~-~fl----~ 58 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRS-PWL----V 58 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCC-Ccc----C
Confidence 47888873 38999999999999999976543331 13345557888999999988 999 9
Q ss_pred CCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcc
Q 036834 151 GESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNH 197 (227)
Q Consensus 151 G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 197 (227)
|+++|+|||++++.+.+. +... ..+|+|.+|++|+.++
T Consensus 59 Gd~~tiADi~l~~~l~~~-------~~~~--~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 59 GSEFTVADIVSWCALLQT-------GLAS--AAPANVQRWLKSCENL 96 (96)
T ss_pred CCCCCHHHHHHHHHHHHc-------cccc--ccChHHHHHHHHHHhC
Confidence 999999999999887542 2332 6799999999999763
No 83
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=1.2e-12 Score=91.88 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=73.9
Q ss_pred HHHHhhchhhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhc
Q 036834 97 WAKFVDDLFWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAG 175 (227)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~ 175 (227)
|+.+..+.+.+.+...+.. .....+....++.+.++.||+.|+++ +|+ +|+++|+|||++++.+.++. ..
T Consensus 4 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~l----~g~~~t~aDi~~~~~~~~~~---~~- 74 (103)
T cd03207 4 WLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKG-PYL----LGERFTAADVLVGSPLGWGL---QF- 74 (103)
T ss_pred eeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccC-Ccc----cCCccCHHHHHHHHHHHHHH---Hc-
Confidence 4444444445444333222 23345666788999999999999987 999 99999999999999998874 22
Q ss_pred CCCccCccchHHHHHHHHhhccccccccCCC
Q 036834 176 SMQTHTQKFPAIAEWTTKFVNHPVIKENLPS 206 (227)
Q Consensus 176 ~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+. . .++|+|++|++++.++|+++++.+.
T Consensus 75 ~~--~-~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 75 GL--L-PERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred CC--C-CCChHHHHHHHHHHcCHHHHHHhcc
Confidence 32 2 6799999999999999999987653
No 84
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=3.6e-12 Score=91.38 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHh----cc---ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHH
Q 036834 89 YERATVRFWAKFVDDLFWNKAFAAF----IA---KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVF 161 (227)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l 161 (227)
.++++++.|+.++.+.+.+...... +. .....+...+.+.+.+..+|.+|+++++|| +| ++|+||+++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l----~G-~fSiAD~~l 76 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANL----FG-EWCIADTDL 76 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcc----cC-CccHHHHHH
Confidence 4789999999999998886532222 11 112456778888999999999996333899 99 599999999
Q ss_pred HHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccCC
Q 036834 162 GVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENLP 205 (227)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 205 (227)
++++.|+. .. |.++ . |++.+|++|+.+||+|++.++
T Consensus 77 ~~~~~~~~---~~-g~~l--~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 77 ALMLNRLV---LN-GDPV--P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHHHH---Hc-CCCC--C--HHHHHHHHHHHCCHHHHHHHh
Confidence 99998883 33 6665 4 999999999999999998764
No 85
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.37 E-value=3.3e-12 Score=93.00 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHh--------cc----ChhhHHHHHHHHHHHHHHHHHhh-hhCCCcccccCCCCCcchh
Q 036834 91 RATVRFWAKFVDDLFWNKAFAAF--------IA----KGEAKEKIEKEVIEGLEKIDGAI-KEKSSLFNSAAGGESIGFL 157 (227)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~l~~le~~L-~~~~~yl~~~~~G~~~t~a 157 (227)
++++++|+.+..+.+.+.+...+ +. .+...+...+++.+.+..+|++| +++ +|+ +|+++|+|
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~-~~l----~Gd~~t~A 76 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDK-PFL----AGDEISIA 76 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc----cCCCCCHH
Confidence 45677888887766655433211 11 23345566788999999999974 545 899 99999999
Q ss_pred HHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhc--cccccccC
Q 036834 158 DIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVN--HPVIKENL 204 (227)
Q Consensus 158 Di~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~~~~~~~~ 204 (227)
||++++.+.+.. .. +.+.+ ..+|+|.+|++++.+ ||+++++.
T Consensus 77 Di~l~~~~~~~~---~~-~~~~~-~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 77 DLSAVCEIMQPE---AA-GYDVF-EGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHHHHH---hc-CCccc-ccCchHHHHHHHHHHhcchhHHHHH
Confidence 999999887663 22 44433 789999999999999 99998753
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.33 E-value=5.8e-12 Score=88.04 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccc
Q 036834 119 AKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHP 198 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
..+....++.+.++.+|+.|+++ +|+ +|+++|+||+++++.+.+. .. .+... .++|+|.+|++++.++|
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~-~~l----~G~~~t~aDi~~~~~~~~~---~~-~~~~~--~~~p~l~~~~~~~~~~p 98 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGR-DWL----AGDRPTIADVAVYPYVALA---PE-GGVDL--EDYPAIRRWLARIEALP 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-Ccc----CCCCCCHHHHHHHHHHHHH---hc-cCCCh--hhCcHHHHHHHHHHhCc
Confidence 45667889999999999999988 999 9999999999999888654 22 23333 78999999999999999
Q ss_pred cc
Q 036834 199 VI 200 (227)
Q Consensus 199 ~~ 200 (227)
++
T Consensus 99 ~~ 100 (100)
T cd03206 99 GF 100 (100)
T ss_pred CC
Confidence 75
No 87
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.29 E-value=1.8e-11 Score=84.51 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccc
Q 036834 119 AKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHP 198 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
..+....++.+.|+.+|+.|+++ +|+ +|+++|+||+++++.+.++........ . +++|+|.+|++++.+||
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~-~~l----~G~~~t~ADi~~~~~~~~~~~~~~~~~---~-~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGG-PYL----VGDKLTIADIALFPMLDWLERLGPDFL---F-EKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-SSS----SBSS-CHHHHHHHHHHHHHHHHTTTTT---H-TTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-Cee----eccCCchhHHHHHHHHHHHHHhCCCcc---c-ccCHHHHHHHHHHHcCC
Confidence 46777888999999999999977 999 999999999999999998865433311 2 68999999999999997
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.23 E-value=4.7e-11 Score=77.56 Aligned_cols=68 Identities=13% Similarity=0.347 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHH
Q 036834 118 EAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTK 193 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 193 (227)
...+...+++.+.|+.+|++|+++ +|+ +|++||+||+++++.+.++..... +.+.. +.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~-~fl----~G~~~s~aD~~l~~~l~~~~~~~~--~~~~~-~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADG-PFL----FGDRPSLADIALAPFLWRLRFVGP--DFDLL-EAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-SBT----TBSS--HHHHHHHHHHHHHHHCTH--TCCHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCC----CCCCCCHHHHHHHHHHHHHHHhCc--CcCcc-ccCHHHHHHHhC
Confidence 356788899999999999999998 899 999999999999999999865533 22333 889999999986
No 89
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.22 E-value=7e-11 Score=83.83 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhCC---------CcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCcc---Cccc
Q 036834 117 GEAKEKIEKEVIEGLEKIDGAIKEKS---------SLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTH---TQKF 184 (227)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le~~L~~~~---------~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~---~~~~ 184 (227)
.+..+....++.+.|+.||..|+++. +|| +|+++|+|||++++.+.++... +++.. ..++
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL----~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~ 95 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWL----CGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKR 95 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcc----CCCCCCHHHHHHHHHHHHHHHc----CccccccccccC
Confidence 34567788899999999999998641 499 9999999999999999887432 33220 1579
Q ss_pred hHHHHHHHHhhccccc
Q 036834 185 PAIAEWTTKFVNHPVI 200 (227)
Q Consensus 185 p~l~~w~~~~~~~~~~ 200 (227)
|+|.+|++|+.+||+|
T Consensus 96 P~l~~w~~rv~aRpsf 111 (111)
T cd03204 96 PNLEAYFERVLQRESF 111 (111)
T ss_pred hHHHHHHHHHHcCCCC
Confidence 9999999999999986
No 90
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.22 E-value=4e-11 Score=84.17 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhcc---------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIA---------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIV 160 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~ 160 (227)
+++++++|+.+..+.+.+........ ..+..+...+++.+.++.+|+.|+++ +|+ +|+++|+|||+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l----~g~~~slaDi~ 76 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGR-DFL----VGDALTIADIA 76 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccC-ccc----cCCCCCHHHHH
Confidence 47889999999877777665442211 23456778889999999999999877 899 99999999999
Q ss_pred HHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhh
Q 036834 161 FGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFV 195 (227)
Q Consensus 161 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 195 (227)
+++.+.++.. .+.+. .++|+|.+|+++++
T Consensus 77 ~~~~~~~~~~----~~~~~--~~~p~l~~~~~~~~ 105 (105)
T cd03179 77 LAAYTHVADE----GGFDL--ADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHhccc----cCCCh--HhCccHHHHHHhhC
Confidence 9999988732 24443 77999999999874
No 91
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.22 E-value=5.1e-11 Score=78.05 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
+.+++|.+++++|++.|+||+.+... . . . ..+|.| +||+|+++|.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~-~-~--~~~P~G-kVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N-A-E--FMSPSG-KVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C-c-c--ccCCCC-cccEEEECCEEEeCHHHHHHHHhcC
Confidence 35678999999999999999988431 1 1 1 146766 9999999999999999999999863
No 92
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.18 E-value=1.1e-10 Score=78.04 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=62.4
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
.+++||+.++||+|.+++.+|...||+|+.+.++-.....++...++.. +||++..+|..+.++..|.+||.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~-~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGAT-TVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCC-CcCeEEECCEEEcCHHHHHHHhC
Confidence 4699999999999999999999999999998887654445566666655 89999999999999999999984
No 93
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.18 E-value=2.5e-10 Score=80.15 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccC------hhhHHHHHHHHHHHHHHHHHhhhh--CCCcccccCCCCCcchhHHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAK------GEAKEKIEKEVIEGLEKIDGAIKE--KSSLFNSAAGGESIGFLDIVF 161 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~le~~L~~--~~~yl~~~~~G~~~t~aDi~l 161 (227)
++++++.+++...+ +.......++.. ........+.+.+.++.+|+.|++ + +|+ +|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~-~~~----~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGG-GYL----VGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-Cee----eCCCccHHHHHH
Confidence 47788999988766 677777766642 345666788899999999999987 6 899 999999999999
Q ss_pred HHHhhhhHHHHHhcCCCc-cCccchHHHHHHHHh
Q 036834 162 GVIGYWLPIYEEAGSMQT-HTQKFPAIAEWTTKF 194 (227)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~-~~~~~p~l~~w~~~~ 194 (227)
++.+.++... +... . ..+|+|.+|++++
T Consensus 76 ~~~~~~~~~~----~~~~~~-~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYL----DPKLLL-KKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhh----CchhhH-HhChhHHHHHHhC
Confidence 9999888432 2221 3 7799999999985
No 94
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-09 Score=82.90 Aligned_cols=170 Identities=15% Similarity=0.224 Sum_probs=124.3
Q ss_pred CChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcCCCCCCC-CCHHH
Q 036834 12 PSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQNNPLLP-QDPYE 90 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p-~~~~~ 90 (227)
...-|..|..+|...++||..+.-+- .+| ++|-| +||.|..|.+.++|-.+|..+.+.+-- .|-. -+..+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~N----aef--mSP~G-~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRAN----AEF--MSPGG-KVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecCC----ccc--cCCCC-CCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhhHH
Confidence 34468999999999999999886542 222 46755 999999999999999999999998742 2221 35557
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhcc------------------------------------------ChhhHHHHHHHHH
Q 036834 91 RATVRFWAKFVDDLFWNKAFAAFIA------------------------------------------KGEAKEKIEKEVI 128 (227)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~ 128 (227)
++.++..++.++..+...-....+. +....++..+++.
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 8888888887777433322211110 1123466677888
Q ss_pred HHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCC---CccCccchHHHHHHHHhhcc
Q 036834 129 EGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSM---QTHTQKFPAIAEWTTKFVNH 197 (227)
Q Consensus 129 ~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~---~~~~~~~p~l~~w~~~~~~~ 197 (227)
..++.|+..|+.. +|| .|++||=+|..+|+.+..+....-. .. ..+ ++|++|-++++|+.++
T Consensus 184 kc~~aLsa~L~~q-~yf----~g~~P~elDAlvFGHlytilTt~Lp-n~ela~~l-kkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 184 KCCRALSAQLGSQ-PYF----TGDQPTELDALVFGHLYTILTTRLP-NMELANIL-KKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHhcCC-Ccc----CCCCccHHHHHHHhhhHHhhhhcCC-cHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999988 999 9999999999999998877543211 11 122 7899999999998763
No 95
>PRK10638 glutaredoxin 3; Provisional
Probab=99.14 E-value=2.4e-10 Score=77.14 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
|+ ++++|+.+.||+|++++.+|..+||+|+.+.++... ..+++.+.++.. ++|++..+|..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~-~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRT-TVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEeCHHHHHHHHH
Confidence 77 899999999999999999999999999999887653 456777888886 99999999999999888777643
No 96
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.13 E-value=4e-10 Score=80.72 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh---hCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhh
Q 036834 119 AKEKIEKEVIEGLEKIDGAIK---EKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFV 195 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~---~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 195 (227)
..+...+.+.+.+..+|.+|+ ++ +|| +|+ +|+||+++++++.++. .. +.+. .|+|.+|++++.
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~-~yl----~Gd-~T~ADi~l~~~~~~~~---~~-~~~~----~P~l~~~~~rv~ 103 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGG-PFL----FGD-FSIADAFFAPVVTRFR---TY-GLPL----SPAAQAYVDALL 103 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCC-CCC----CCC-CcHHHHHHHHHHHHHH---Hc-CCCC----CHHHHHHHHHHH
Confidence 355666677777888887774 44 899 999 9999999999988873 22 4432 399999999999
Q ss_pred ccccccccCC
Q 036834 196 NHPVIKENLP 205 (227)
Q Consensus 196 ~~~~~~~~~~ 205 (227)
++|+|++++.
T Consensus 104 ~rPsv~~~~~ 113 (114)
T cd03194 104 AHPAMQEWIA 113 (114)
T ss_pred CCHHHHHHHh
Confidence 9999998764
No 97
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.12 E-value=1.8e-10 Score=79.65 Aligned_cols=92 Identities=16% Similarity=0.347 Sum_probs=68.5
Q ss_pred HHHHHHhhchhhHHHHHHhcc-------ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhh
Q 036834 95 RFWAKFVDDLFWNKAFAAFIA-------KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYW 167 (227)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~ 167 (227)
+.|+.+..+.+.+.....+.. .++..+...+++.+.++.+|+.|+++ +|+ +|+++|+||+++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~----~g~~~t~aDi~~~~~l~~ 76 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGR-PYL----AGDRFSLADIALAPVLAR 76 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccC-CCC----CCCCcCHHHHHHHHHHHH
Confidence 356666666555554444332 24456777889999999999999988 999 999999999999999998
Q ss_pred hHHHHHhcCCCccCccchHHHHHHHHh
Q 036834 168 LPIYEEAGSMQTHTQKFPAIAEWTTKF 194 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
+.......+ .. +.+|++.+|++++
T Consensus 77 ~~~~~~~~~--~~-~~~p~l~~~~~~~ 100 (100)
T cd00299 77 LDLLGPLLG--LL-DEYPRLAAWYDRL 100 (100)
T ss_pred HHHhhhhhh--hh-ccCccHHHHHHhC
Confidence 864333211 22 6799999999875
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.12 E-value=1.8e-10 Score=80.32 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhhhhCCC--cccccCCCCCcchhHHHHHHH
Q 036834 87 DPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAIKEKSS--LFNSAAGGESIGFLDIVFGVI 164 (227)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~--yl~~~~~G~~~t~aDi~l~~~ 164 (227)
++..++.+++|+++.. ............+...+...+++.+.+..+++.|+.+ . || +|++||+||+++++.
T Consensus 2 ~~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~~l----~G~~~T~AD~~v~~~ 74 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAER-GGDFL----VGDKPTLADIAVFGF 74 (99)
T ss_dssp --TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHT-SSSSS----SSSS--HHHHHHHHH
T ss_pred chHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcC-CCeee----cCCCCCHHHHHHHHH
Confidence 3446778888888541 0000000000123356777888999999999999987 5 99 999999999999998
Q ss_pred hhhhHHHHHhcCCCccCccchHHHHHHHHhhc
Q 036834 165 GYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVN 196 (227)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
|..+. . . .+. ..+|+|.+|++||++
T Consensus 75 l~~~~----~-~-~~~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 75 LASLR----W-A-DFP-KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHH----C-C-HHT-TTCHHHHHHHHHHHT
T ss_pred HHHHh----h-c-ccc-cccHHHHHHHHhhcC
Confidence 86552 1 2 221 479999999999974
No 99
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.05 E-value=8.3e-10 Score=80.26 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhc
Q 036834 120 KEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVN 196 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
.+...+.+.+.|+.+|++|+++ +|+ .|+++|+||+++++.+.+... ..+.+++ +++|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~-~fl----~Gd~~t~AD~~l~~~l~~~~~---~~~~~~~-~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQ-PFL----GGAAPNYADYIVFGGFQWARI---VSPFPLL-EEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCC-Ccc----CCCCCchhHHHHHHHHHHHHH---cCccccc-ccCChHHHHHHHHhc
Confidence 4577788999999999999987 999 999999999999999988743 2244434 789999999999976
No 100
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.02 E-value=1.9e-09 Score=70.63 Aligned_cols=71 Identities=25% Similarity=0.254 Sum_probs=59.9
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
+++||+.++||+|.+++-+|...|++|+.+.++-......+....... ++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~-~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAM-TVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCC-CcCeEEECCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999887544333444444544 89999999999999999999974
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.00 E-value=1.6e-09 Score=73.78 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcC-C-CccCccchHHHHHHHHhh
Q 036834 122 KIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGS-M-QTHTQKFPAIAEWTTKFV 195 (227)
Q Consensus 122 ~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~-~-~~~~~~~p~l~~w~~~~~ 195 (227)
...+++.+.++.+|+.|+++ +|+ +|+++|+|||++++.+.++.......+ . ..+ ..+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~-~yl----~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~-~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK-KFF----FGDKPTSLDATVFGHLASILYAPLPNSALQLIL-KEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC-Ccc----CCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHH-HhCcHHHHHHHHhC
Confidence 66778999999999999988 999 999999999999999887742100000 0 012 67999999999974
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.89 E-value=1.3e-08 Score=66.87 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 11 WPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
..||+|.++.++|...|++|+.+...-. ...|.| ++|+|+++|..+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~g-kLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPTG-KLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCCC-ccCEEEECCEEecChHHHHHHHHHc
Confidence 3579999999999999999988754321 235776 9999999999999999999999864
No 103
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.84 E-value=1.5e-08 Score=66.58 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=57.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILE 72 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~ 72 (227)
+++||+.+.||+|++++.+|..+||+|+.+.++-. ...+++.+.++.. ++|++..+|..|.+.....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~-~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSS-VVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999988653 3455677888876 99999999998887665443
No 104
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.2e-07 Score=74.87 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHHHhhcCCCCCCCCC-HH
Q 036834 12 PSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYIEETWQNNPLLPQD-PY 89 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL~~~~~~~~l~p~~-~~ 89 (227)
.++-|..+.++++..+-|.+........ ..|.| ++|+|+. +|..+++-..|..||.....+-.+-+.. ..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~sg-~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPSG-KLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCCC-CCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 4788999999999999665555443222 24666 9999996 6699999999999998843221122222 44
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhccC-------------------------------------------hhhHHHHHHH
Q 036834 90 ERATVRFWAKFVDDLFWNKAFAAFIAK-------------------------------------------GEAKEKIEKE 126 (227)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 126 (227)
+.+....|+.+++..+.+.....++.+ .+..+.....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 567777888888887777666544310 0112333455
Q ss_pred HHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccC---ccchHHHHHHHHhhc
Q 036834 127 VIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHT---QKFPAIAEWTTKFVN 196 (227)
Q Consensus 127 ~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~---~~~p~l~~w~~~~~~ 196 (227)
..+.+..+++.|+++ .|+ +|++||..|+.++..+..+.... . ..+.+. ..+++|.++++++..
T Consensus 168 Aska~~~LS~~Lgs~-kff----Fgd~psslDa~lfs~la~~~~~~-L-p~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSK-KFF----FGDKPSSLDALLFSYLAILLQVA-L-PNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCc-eEe----eCCCCchHHHHHHHHHHHHHhcc-C-CchhHHHHHHhcchHHHHHHHHHH
Confidence 678889999999998 999 99999999999999988743211 1 111110 448999999999876
No 105
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.78 E-value=4e-08 Score=72.81 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCC-CccCccchHHHHHHHHhhc
Q 036834 121 EKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSM-QTHTQKFPAIAEWTTKFVN 196 (227)
Q Consensus 121 ~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~ 196 (227)
+..++.+...++.+-+.+..+++|+ +|++||+||+++++.+..+. ...++ ++ .++|+|.+|++||++
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~~~Fl----aGd~ptIADisvyg~l~s~e---~~~~~~Dl--~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKDRQFH----GGSKPNLADLAVYGVLRSVE---GHPAFKDM--VEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCcc----CCCCCCHHHHHHHHHHHHHH---Hhccccch--hhCcCHHHHHHHHHH
Confidence 4445555555655555555443899 99999999999999987773 33355 55 789999999999986
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.77 E-value=2.7e-08 Score=66.66 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=48.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeee
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINE 66 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e 66 (227)
+++||+.++||+|.+++-+|..+||+|+.+.++-.....+....++.. +||+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~-~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFR-QLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCC-CcCEEEECCEEEec
Confidence 589999999999999999999999999999887532222223345665 99999998866554
No 107
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.76 E-value=1.8e-07 Score=65.50 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHhhchhhHHHHH-----Hhcc--ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHH
Q 036834 87 DPYERATVRFWAKFVDDLFWNKAFA-----AFIA--KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDI 159 (227)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi 159 (227)
|..+|++.+++..+..+.|++.-.. .|.+ ...-.+.....+.+.+...+.+|.++++|| .|+ .||||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~L----FGe-wsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNL----FGE-WSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SST----TSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCc----ccc-chHHHH
Confidence 4678999999999999987754322 2222 223457777888888999999999877999 995 999999
Q ss_pred HHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhccccccccC
Q 036834 160 VFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIKENL 204 (227)
Q Consensus 160 ~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
.+++++.++. ..|.++ .+.+.+|.++.-++|+|++.+
T Consensus 76 dlA~ml~Rl~----~~gd~v----P~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 76 DLALMLNRLV----TYGDPV----PERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHHHHH----TTT--------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHH----HcCCCC----CHHHHHHHHHHHCCHHHHHHH
Confidence 9999999983 336554 478999999999999998754
No 108
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.74 E-value=5e-08 Score=63.52 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=55.0
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeee--eeHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPI--NESLTILEYI 74 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l--~es~~I~~yL 74 (227)
+++||+.++||+|++++..|..+|++|..+.++-.. ...++.+.++.. .+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~-~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQR-GVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCC-cccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999988776432 234456667776 899999988777 5556666554
No 109
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.72 E-value=4.2e-08 Score=63.77 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=52.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINES 67 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es 67 (227)
.+++|+.++||+|.+++.+|.++|++|+.+.++.. ...+++.+.|+.+ ++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~-~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYR-SVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCc-ccCEEEECCEEEecC
Confidence 47999999999999999999999999999888764 3345677788876 999999988766553
No 110
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.71 E-value=7.8e-08 Score=62.18 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=58.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPINESLTILEY 73 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~y 73 (227)
+++||+.+.||+|++++.+|..+|++|+.+.++... ...++.+.++.. ++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~-~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWP-TVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999988776543 345666778875 999999999999999887654
No 111
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.67 E-value=1.5e-07 Score=65.25 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHh
Q 036834 117 GEAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKF 194 (227)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
+...+....++.+.|..+|++|+++ +| +++|+|||++++.+.++.... .+.... .++|+|.+|+++|
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~-~~-------d~~TlADi~l~~~l~~~~~~~--~~~~~~-~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKL-PL-------DPLDLADIAVACALGYLDFRH--PDLDWR-AAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhC-CC-------CCCCHHHHHHHHHHHHHHhHc--cCcchh-hhChHHHHHHHhC
Confidence 3456777899999999999999875 44 789999999999998884321 133222 7899999999986
No 112
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.66 E-value=3.9e-08 Score=71.62 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHH-HHhcCCC-ccCccchHHHHHHHHhh
Q 036834 118 EAKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIY-EEAGSMQ-THTQKFPAIAEWTTKFV 195 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~-~~~~~~~-~~~~~~p~l~~w~~~~~ 195 (227)
...++....+.+.|+.|+..|+++ +|| +|++||.+|+++++.+.++... .+..... .+ .++|+|.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~-~~l----~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~-~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQ-PYF----FGDQPTELDALVFGHLFTILTTQLPNDELAEKV-KKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC-CCC----CCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHH-HhCcHHHHHHHhcC
Confidence 356777888999999999999998 999 9999999999999998777422 0000111 12 78999999999984
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.56 E-value=4e-07 Score=59.81 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=55.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhh-CCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLES-NPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~-~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
+++||+.+.||+|.+++-+|..+||+|+.+.++.. ....++.+. +... .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~-~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRR-TVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCC-ccCEEEECCEEEeChHHHHHHHh
Confidence 47999999999999999999999999999888753 122233333 3322 79999999999999988877643
No 114
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.55 E-value=2.8e-07 Score=68.09 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCC----CccCccchHHHHHHHHh
Q 036834 119 AKEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSM----QTHTQKFPAIAEWTTKF 194 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~----~~~~~~~p~l~~w~~~~ 194 (227)
..++..+++.+.++.+|+.|+++ +|| +|+++|.+|+++++.+..+... .. +. ..+ .++|+|.+|++||
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~-~~~----~Gd~~t~~D~~~~~~l~~~~~~-~~-~~~~l~~~~-~~~pnL~~~~~ri 132 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGES-QFF----FGDTPTSLDALVFGYLAPLLKA-PL-PNNKLQNHL-KQCPNLCRFCDRI 132 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCC-CcC----CCCCCcHHHHHHHHHHHHHHhc-cC-CChHHHHHH-HHCcHHHHHHHHH
Confidence 45677788899999999999998 999 9999999999999988666321 11 10 112 7899999999999
Q ss_pred hc
Q 036834 195 VN 196 (227)
Q Consensus 195 ~~ 196 (227)
.+
T Consensus 133 ~~ 134 (137)
T cd03212 133 LS 134 (137)
T ss_pred HH
Confidence 75
No 115
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.51 E-value=7e-07 Score=60.33 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=60.4
Q ss_pred ceEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCC-CChhhhhhCC--CCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFN-KSPKLLESNP--IHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~-~~~~~~~~~p--~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++++|+.++||+|.+++-+|.. .|++|+.+.++-.. ...++..... .. .||++..+|..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~-~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVE-TVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCC-cCCEEEECCEEEcCHHHHHHHHH
Confidence 4999999999999999999999 89999998887432 1233433322 13 79999999999999999999998
Q ss_pred hhcC
Q 036834 76 ETWQ 79 (227)
Q Consensus 76 ~~~~ 79 (227)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.49 E-value=5.9e-07 Score=59.73 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=57.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
+++|+.+.||+|.+++-+|+.+|++|+.+.++.. ....++.+..... .+|++..+|..+.+...+.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~-~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRR-TVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCC-CcCEEEECCEEEcChHHHHHHHHc
Confidence 5899999999999999999999999999988754 2233444554544 899999999999988887777554
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.48 E-value=4.4e-07 Score=59.34 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=44.1
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCe
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEK 62 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 62 (227)
++||+.+.||+|++++-+|..+||+|+.+.++-.....+.+...+.. .||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~-~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFR-QVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCc-ccCEEEECCC
Confidence 58999999999999999999999999999887543222223334544 8999998653
No 118
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.9e-07 Score=58.91 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=54.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC--CChhhhh-hCCCCCcccEEEeCCeeeeeHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN--KSPKLLE-SNPIHKKVPVLIHGEKPINESLTILEY 73 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~~~~-~~p~~~~vP~L~~~g~~l~es~~I~~y 73 (227)
.+++|..+.||||.+++-+|..+|++|+.+.++... ...++.. .++.. +||++..+|..+.......++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999887754 3334443 44655 899999999877655444444
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.45 E-value=5.2e-07 Score=59.40 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=49.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhC-CCCCcccEEEe-CCeeeeeHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESN-PIHKKVPVLIH-GEKPINESL 68 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~-p~~~~vP~L~~-~g~~l~es~ 68 (227)
+++||+.++||+|++++.+|...|++|+.+.++-.. ....+...| +.. .+|+++. +|..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~-~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNM-TVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCc-eeCEEEECCCeEecCCC
Confidence 479999999999999999999999999987776443 234455665 665 8999974 677766543
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.39 E-value=4.9e-07 Score=56.83 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l 64 (227)
+++|+.+.||+|.+++-+|..+|++|+...++-. ...+++.+..... ++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~-~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVR-TVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSS-SSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCC-ccCEEEECCEEC
Confidence 5899999999999999999999999999998765 3445555554444 899999988764
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.36 E-value=2.6e-06 Score=57.70 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=56.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcC-----CceEEEecCCCC-CChhhhhhCCC-CCcccEEEeCCeeeeeHHHHHHHHHhh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKG-----VDYEYFEEDPFN-KSPKLLESNPI-HKKVPVLIHGEKPINESLTILEYIEET 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~g~~l~es~~I~~yL~~~ 77 (227)
+++|+.++||+|.+++-+|...+ ++|+.+.++... ...++.+.... ...||++..+|..+.++..|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999985 567777665322 12334433221 027999999999999999999999886
Q ss_pred cC
Q 036834 78 WQ 79 (227)
Q Consensus 78 ~~ 79 (227)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 53
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.33 E-value=5e-06 Score=57.87 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=56.7
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCCh----hhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSP----KLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
.++++|+.++||||.+++-+|...|++|+.+.+|...... .+...+... +||++..+|..|.+...+....
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~-tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSP-AVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCC-CcCeEEECCEEEcCHHHHHHHH
Confidence 4699999999999999999999999999999888543222 233444444 8999999999999888776643
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.31 E-value=5.2e-06 Score=55.33 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=59.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCCh----hhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSP----KLLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
++++|+.++||+|.+++-+|...+++|+...++..+... .+.+.+... ++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~-~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQR-TVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCC-CCCeEEECCEEEcCHHHHHHHHHc
Confidence 478999999999999999999999999999888764322 233444443 899999999999999999988764
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.26 E-value=7e-06 Score=58.01 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=55.9
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCC---ceEEEecCCCCC----ChhhhhhCCCCCcccEEEeCCeeeeeHHHHHH
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGV---DYEYFEEDPFNK----SPKLLESNPIHKKVPVLIHGEKPINESLTILE 72 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~ 72 (227)
.++++|..++||||.+++-+|...|+ +|+.+.++-... ..++.+.+... +||.+..+|..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~-tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR-TVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC-CcCEEEECCEEEeChHHHHH
Confidence 47999999999999999999999999 788888875322 33455555554 89999999999988877665
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.06 E-value=2.4e-05 Score=54.21 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=53.7
Q ss_pred cceEEecc-----CCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGI-----WPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
.++.+|.. ++||||.+++-+|..+||+|+.+.++-. ....++.+.+... +||.+..+|..|.+...+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP-TIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC-CCCEEEECCEEEeChHHHHHHH
Confidence 46788854 8899999999999999999998877532 1222333445544 8999999999998887776654
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.05 E-value=3.9e-05 Score=51.20 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=56.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCc--eEEEecCCCCCChh----hhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHh
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVD--YEYFEEDPFNKSPK----LLESNPIHKKVPVLIHGEKPINESLTILEYIEE 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~--~~~~~v~~~~~~~~----~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~ 76 (227)
+++|+.++||+|.+++-+|...+++ |+...++......+ +.+..... ++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~-~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR-TVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC-CCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 88888876543332 33444444 799999999999999888887654
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.03 E-value=3.3e-05 Score=52.70 Aligned_cols=71 Identities=20% Similarity=0.099 Sum_probs=54.9
Q ss_pred cceEEecc-----CCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGI-----WPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
.++++|.. ++||||.+++-+|...|++|+.+.++-.. ...++.+..... ++|++..+|..|.+...+.+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~-tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWP-TFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCC-CCCEEEECCEEEeCHHHHHHHH
Confidence 35788865 69999999999999999999999876431 223344445544 8999999999999988887754
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.79 E-value=0.00017 Score=47.02 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHcCCc---eEEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeeHHHHHHHH
Q 036834 12 PSPFVFRVKVALQLKGVD---YEYFEEDPFNKSPKLLESNPIHKKVPVLIH-GEKPINESLTILEYI 74 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yL 74 (227)
.+|-|..+..+|+..+.+ |+.+...-.. .+|.| ++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-------~Sptg-~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-------LSPTG-ELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-------cCCCC-CCCEEEECCCcEEECHHHHHHhh
Confidence 589999999999999999 7777664322 36777 9999999 999999999999998
No 129
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.77 E-value=0.00031 Score=51.26 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccc
Q 036834 120 KEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPV 199 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
..+..+++...|..+|.++... ... .| ++|+-||.+|+.|+.+.. ..|..+ -|+|++|+++|.+...
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~-~~~----n~-~LS~dDi~lFp~LR~Lti---vkgi~~----P~~V~~Y~~~~s~~t~ 123 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASP-NAV----NG-ELSIDDIILFPILRSLTI---VKGIQW----PPKVRAYMDRMSKATG 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCT-TBT----TS-S--HHHHHHHHHHHHHCT---CTTS-------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhccc-ccc----CC-CCCHHHHHHHHHHhhhhh---ccCCcC----CHHHHHHHHHHHHHcC
Confidence 4677888999999999999865 555 44 899999999999998843 334444 4899999999998776
Q ss_pred cc
Q 036834 200 IK 201 (227)
Q Consensus 200 ~~ 201 (227)
|.
T Consensus 124 V~ 125 (132)
T PF04399_consen 124 VP 125 (132)
T ss_dssp --
T ss_pred CC
Confidence 64
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.73 E-value=0.00014 Score=63.50 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhh-hh--------CCCCCcccEEEeCCeeeeeHHHHH
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLL-ES--------NPIHKKVPVLIHGEKPINESLTIL 71 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~~~vP~L~~~g~~l~es~~I~ 71 (227)
|. ++++|+.++||+|.++.-+|..+||+|+.+.++-.....++. .. .... +||++..||..|.+-....
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~-tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIR-TVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCC-ccCeEEECCEEEeCchHHH
Confidence 66 799999999999999999999999999999887332222222 21 2333 7999999999988887776
Q ss_pred H
Q 036834 72 E 72 (227)
Q Consensus 72 ~ 72 (227)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.62 E-value=0.0003 Score=52.44 Aligned_cols=71 Identities=13% Similarity=0.007 Sum_probs=55.0
Q ss_pred ceEEeccC------CChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCC---CCcccEEEeCCeeeeeHHHHHHH
Q 036834 4 EVKLLGIW------PSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPI---HKKVPVLIHGEKPINESLTILEY 73 (227)
Q Consensus 4 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~---~~~vP~L~~~g~~l~es~~I~~y 73 (227)
+++||..+ ++|+|.+++-+|..+||+|+.+.|+.. ...+++.+.... ..+||.+..+|..|.+...+.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 47899998 899999999999999999999988764 233444444221 12899999999999888777764
Q ss_pred H
Q 036834 74 I 74 (227)
Q Consensus 74 L 74 (227)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
No 132
>PRK10824 glutaredoxin-4; Provisional
Probab=97.44 E-value=0.00071 Score=48.22 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred cceEEecc-----CCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGI-----WPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
.++++|.- |.||||.++.-+|...|++|..+.++-. .....+.+.+... +||-+..+|..|.+...+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~-TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWP-TFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCC-CCCeEEECCEEEcChHHHHHHH
Confidence 35777765 5899999999999999999998877543 2223344455444 8999999999999988777654
No 133
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.30 E-value=0.0012 Score=47.70 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccc
Q 036834 120 KEKIEKEVIEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPV 199 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
..+..+++...|..++.++... ... +..+|+-||.+|++|+.+.. ..|..+ -|+|.+|+++|.+...
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~-~~~-----n~~ls~DDi~lFp~LR~Lt~---vkgi~~----P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSS-EAV-----NGQLSTDDIILFPILRNLTL---VKGLVF----PPKVKAYLERMSALTK 124 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCc-ccc-----CCcCCHHHHHHHHHHhhhhh---hcCCCC----CHHHHHHHHHHHHHhC
Confidence 3477788899999999999643 334 45799999999999998853 335544 3799999999998876
Q ss_pred cc
Q 036834 200 IK 201 (227)
Q Consensus 200 ~~ 201 (227)
|.
T Consensus 125 V~ 126 (128)
T cd03199 125 VP 126 (128)
T ss_pred CC
Confidence 53
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0064 Score=42.49 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=57.8
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhh----hhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLL----ESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~----~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
..+.+|.-++||||.+++-+|...|+++..+++|-.....++. +..-.. +||.+..+|..|-....+..+=
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~-tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQR-TVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCC-CCCEEEECCEEEcCHHHHHHHH
Confidence 4688999999999999999999999999999998764444444 233333 8999999999998888877764
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=96.96 E-value=0.004 Score=49.05 Aligned_cols=71 Identities=20% Similarity=0.056 Sum_probs=53.1
Q ss_pred cceEEecc-----CCChHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHH
Q 036834 3 TEVKLLGI-----WPSPFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYI 74 (227)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL 74 (227)
.++.||.- |.||||+++.-+|...||+|++..++-.. ....+.+.+... ++|.+..+|..|.+...+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~-TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWP-TYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCC-CCCeEEECCEEEcChHHHHHHH
Confidence 35777854 68999999999999999999988776332 223333444443 8999999999998887777643
No 136
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.003 Score=40.74 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=47.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-----------CCChhhhhhCCCC-CcccEEEe-CCeeee
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-----------NKSPKLLESNPIH-KKVPVLIH-GEKPIN 65 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-----------~~~~~~~~~~p~~-~~vP~L~~-~g~~l~ 65 (227)
|+ +.+||+...||-|....-.|+-.++.|+.+.+.-. +..++|-+....| =-+|.|.. +|.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 77 77999999999999999999999999999988533 3555555433222 03799984 565554
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.91 E-value=0.004 Score=39.53 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=40.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHc-----CCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLK-----GVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPIN 65 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 65 (227)
++++|+.++||+|.++.-+|... +++|....++ . .+++.+..... .+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i~-~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGVM-SVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCCc-ccCEEEECCEEEE
Confidence 58999999999999998888865 5666555443 2 23333333333 6999998887654
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.81 E-value=0.0019 Score=45.78 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=30.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDP 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~ 37 (227)
++||+.+.||+|++++-+|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999987753
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.76 E-value=0.0023 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=30.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.||+|++++-+|..+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998874
No 140
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.00082 Score=59.09 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=76.9
Q ss_pred CCeeeeeHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhccChhhHHHHHHHHHHHHHHHHHhh
Q 036834 60 GEKPINESLTILEYIEETWQ-NNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIAKGEAKEKIEKEVIEGLEKIDGAI 138 (227)
Q Consensus 60 ~g~~l~es~~I~~yL~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 138 (227)
++..+.++..+..|...... .+.|+|.+ .++.+++.|+++.... ....+...+..++..|
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~ld~~l 104 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSELDKFL 104 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHHHHhhh
Confidence 45666666667777654442 33488877 7899999999987651 1124566788888888
Q ss_pred hhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccccc
Q 036834 139 KEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIK 201 (227)
Q Consensus 139 ~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
.-. .|| +|.++|+||+++|+.+..-.-..+..... ..+-+|.+|++-....++..
T Consensus 105 ~~~-t~l----vg~sls~Ad~aiw~~l~~n~~~~~~lk~~---k~~~~v~Rw~~~~~~~~a~~ 159 (712)
T KOG1147|consen 105 VLR-TFL----VGNSLSIADFAIWGALHSNGMRQEQLKAK---KDYQNVERWYDLPEFQEAHN 159 (712)
T ss_pred hHH-HHh----hccchhHHHHHHHHHHhcccchHHHHHhh---CCchhhhhhcCcHhHHHHHH
Confidence 887 999 99999999999999986531111111111 35678999988444333333
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.69 E-value=0.003 Score=46.19 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.||+|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999998774
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.58 E-value=0.0057 Score=43.62 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=30.1
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.|+.|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999988774
No 143
>PRK10026 arsenate reductase; Provisional
Probab=96.54 E-value=0.0045 Score=45.73 Aligned_cols=34 Identities=6% Similarity=-0.031 Sum_probs=31.9
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
|+ ++++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 75 89999999999999999999999999998875
No 144
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.36 E-value=0.0098 Score=43.47 Aligned_cols=32 Identities=19% Similarity=0.056 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.|+.|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 79999999999999999999999999998774
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.34 E-value=0.0065 Score=43.45 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=29.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.||+|++++-+|..+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988764
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.31 E-value=0.012 Score=43.16 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=30.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.|+.|++++-.|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 79999999999999999999999999999875
No 147
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.23 E-value=0.023 Score=37.23 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=41.1
Q ss_pred eEEeccCCChHHHHH----HHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeee
Q 036834 5 VKLLGIWPSPFVFRV----KVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l 64 (227)
+.+|. ++||.|..+ .-++.+.|+.++...++- .++..+.+-. .+|+++.+|..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v~--~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGVT--ATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCCC--cCCEEEECCEEE
Confidence 77877 999999988 668888999999888872 3334455553 699999887655
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.02 E-value=0.012 Score=41.30 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=29.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~ 36 (227)
+++|+.+.|+.|++++-.|..+|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988763
No 149
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.95 E-value=0.025 Score=37.59 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=39.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcC--CceEEEecCCCCCChhhhhhCCCCCcccEEEeCC
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKG--VDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGE 61 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g 61 (227)
+++||+-+.|+.|..+.-.|.... .+|+...+|... ++++...-- . .||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~-~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYG-Y-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSC-T-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhc-C-CCCEEEEcC
Confidence 479999999999999999999644 456677777764 444444332 2 799999876
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.94 E-value=0.014 Score=41.54 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=29.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
.++||+.+.|+.|++++-+|..+|++|+.+.+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 37999999999999999999999999998865
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.74 E-value=0.063 Score=36.67 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=48.2
Q ss_pred eEEeccCCCh------HHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCC----CCCcccEEEeCCeeeeeHHHHHH
Q 036834 5 VKLLGIWPSP------FVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNP----IHKKVPVLIHGEKPINESLTILE 72 (227)
Q Consensus 5 ~~Ly~~~~sp------~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~L~~~g~~l~es~~I~~ 72 (227)
++||....|. .|++|+.+|.-+||+|+.+.++... ...++.+..+ .. .+|-+..+|..+.+...+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~-tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKP-LPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCC-CCCEEEECCEEeeCHHHHHH
Confidence 6788776653 4678999999999999999987642 2333333322 23 79999999999988765554
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.024 Score=40.53 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=29.9
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
++++|+.+.|.-|++++-.|+..||+|+.+.+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 48999999999999999999999999998865
No 153
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.53 E-value=0.059 Score=35.30 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=39.5
Q ss_pred ceEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCe
Q 036834 4 EVKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEK 62 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 62 (227)
+++||+.++||+|..+.-.+.. .+..+....+|..+......+.+ .. .+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-v~-~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYG-IM-AVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcC-Cc-cCCEEEECCE
Confidence 5789999999999988777653 45456666777655444333433 33 6999998765
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.09 E-value=0.042 Score=39.85 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=30.0
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
.+++|+.+.|.-|++++-.|..+||+|+.+.+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 58999999999999999999999999998865
No 155
>PRK10853 putative reductase; Provisional
Probab=95.05 E-value=0.044 Score=39.28 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=29.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
+++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 7999999999999999999999999998865
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.67 E-value=0.058 Score=38.22 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=28.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
+++|+.+.|.-|++++-.|...|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999998765
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.55 E-value=0.065 Score=38.12 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=28.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
+++|+.+.|.-|++++-.|...|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999998765
No 158
>PHA02125 thioredoxin-like protein
Probab=94.36 E-value=0.15 Score=33.18 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=36.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
+++|+.++|+.|+.+.-.|+ +++++...+|... .+++....... .+|+++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v~-~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHIR-SLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCCc-eeCeEEC
Confidence 78999999999999888876 4566766676544 33444443333 6999983
No 159
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.06 E-value=0.16 Score=30.30 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=36.1
Q ss_pred eEEeccCCChHHHHHHHHHH-----HcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVALQ-----LKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
+.+|+..+|++|.+++-.+. ..++.+..+.++...........++.. .+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVG-GVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCc-cccEEEE
Confidence 46788889999999999999 456666665554433222222345555 8999985
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.36 E-value=0.14 Score=34.73 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=39.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHc-----CCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLK-----GVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPIN 65 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 65 (227)
++.+|..++||+|..+.-++... ++.+..+.+ .+.++...+.+-. .+|.++.+|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~--~~~~e~a~~~~V~--~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDG--ALFQDEVEERGIM--SVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEh--HhCHHHHHHcCCc--cCCEEEECCEEEE
Confidence 58899999999999877766554 455554444 3434444555553 6999998776544
No 161
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.94 E-value=0.32 Score=34.20 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHc---CCceEEEecCCCCCChhhhh-hCCCCCcccEEEe-CCe-------------eeeeHHHHHHH
Q 036834 12 PSPFVFRVKVALQLK---GVDYEYFEEDPFNKSPKLLE-SNPIHKKVPVLIH-GEK-------------PINESLTILEY 73 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~---gi~~~~~~v~~~~~~~~~~~-~~p~~~~vP~L~~-~g~-------------~l~es~~I~~y 73 (227)
.||.|..+-=+|+.. .-..+.+.|++........+ ++.....+|+|+- +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 466666665555432 22456667777754444443 3333347999984 333 79999999999
Q ss_pred HHhhcC
Q 036834 74 IEETWQ 79 (227)
Q Consensus 74 L~~~~~ 79 (227)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999986
No 162
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.64 Score=32.00 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=50.6
Q ss_pred ceEEe-----ccCCChHHHHHHHHHHHcC-CceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 4 EVKLL-----GIWPSPFVFRVKVALQLKG-VDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 4 ~~~Ly-----~~~~sp~~~~v~~~L~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
++.|| .+|-|+|+.++--+|...| ++|..+.|-.. +.+..+.+.+-.- ++|-|-.+|..+.+|..|.+-..
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WP-T~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWP-TFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCC-CCceeeECCEEeccHHHHHHHHH
Confidence 46666 3678999999999999999 67766655322 2233333444443 89999999999999887777654
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.70 E-value=0.93 Score=29.43 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=37.3
Q ss_pred eEEeccCCChHHHHHHH----HHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeH
Q 036834 5 VKLLGIWPSPFVFRVKV----ALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINES 67 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~----~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es 67 (227)
+++ ..+.||+|..+.- ++...|+.++...+ ...++..+.+-. .+|.++.||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~ygv~--~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKYGVM--SVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHTT-S--SSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHcCCC--CCCEEEECCEEEEEe
Confidence 777 4556999996554 56667877766654 234455455553 699999988765443
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.55 E-value=0.7 Score=31.97 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCcceEEeccCCCh------HHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhC------CC-CCcc-cEEEeCCeeee
Q 036834 1 MATEVKLLGIWPSP------FVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESN------PI-HKKV-PVLIHGEKPIN 65 (227)
Q Consensus 1 M~~~~~Ly~~~~sp------~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~------p~-~~~v-P~L~~~g~~l~ 65 (227)
|. +++|....|+ ..+++..+|..++|+|+.+.+.... ....+++.. |. +..+ |-+..++..+.
T Consensus 1 m~--I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MV--IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp -S--EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred CE--EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 55 8899877654 3568999999999999988876642 222233222 11 1134 67888888877
Q ss_pred eHHHHHHH
Q 036834 66 ESLTILEY 73 (227)
Q Consensus 66 es~~I~~y 73 (227)
+--.+-+.
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 76555443
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.70 E-value=0.84 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.3
Q ss_pred eccCCChHHHHHHHHHHHcCCceEEEec
Q 036834 8 LGIWPSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 8 y~~~~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
|+.+.|.-|++++-.|...||+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~ 28 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDY 28 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEET
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehh
Confidence 8899999999999999999999998765
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=81.29 E-value=13 Score=24.68 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=41.9
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee------eeHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKPI------NESLTIL 71 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l------~es~~I~ 71 (227)
+..++.++|+.|+...=.+ .+.+ ++....+|......-..+.+- . .+|.+. .+|..+ .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v-~-~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGV-K-SVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTC-S-SSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCC-C-CCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 6677889999999876333 3343 566667776543333334444 3 799998 366443 2444566
Q ss_pred HHHHh
Q 036834 72 EYIEE 76 (227)
Q Consensus 72 ~yL~~ 76 (227)
++|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 167
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.13 E-value=8.4 Score=28.31 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=49.8
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee---eHHHHHHHHHhhc
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPIN---ESLTILEYIEETW 78 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~---es~~I~~yL~~~~ 78 (227)
.+++.|+.|.|..|..-.=.|+.+|.++..+..+....-..-+.+-+..+..=+.+.+|..+- -..+|.+.|++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 368999999999999988899999999888876543111110111110012345566776653 3568999998875
No 168
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=77.83 E-value=5.9 Score=30.18 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhC--CCcccccCCCCC-cchhHHHHHHHhhhh
Q 036834 127 VIEGLEKIDGAIKEK--SSLFNSAAGGES-IGFLDIVFGVIGYWL 168 (227)
Q Consensus 127 ~~~~l~~le~~L~~~--~~yl~~~~~G~~-~t~aDi~l~~~l~~~ 168 (227)
-.+.+..+++.|+.. ..|+ .|+. +|-+||.+++.|.-+
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~----f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYF----FGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHhhccccccc----cCCCCCCHHHHHHHHHHHHH
Confidence 466888888888764 2677 6766 999999999988644
No 169
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=5.4 Score=31.72 Aligned_cols=65 Identities=20% Similarity=0.058 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHH
Q 036834 10 IWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 10 ~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
.|-|++++++.-.|...|++|....|--+ ..+...+..+-.- +.|-|-.+|..+.+...|.+-+.
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWP-TfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWP-TFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCC-CccceeECCEeccCcHHHHHHhh
Confidence 57799999999999999999998877433 1223333455554 89999999999888776666554
No 170
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.79 E-value=7.2 Score=35.60 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=38.3
Q ss_pred ceEEeccCCChHHHHHHH----HHHHc-CCceEEEecCCCCCChhhh-hhCCCCCcccEEEeCCeeee
Q 036834 4 EVKLLGIWPSPFVFRVKV----ALQLK-GVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLIHGEKPIN 65 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~----~L~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~~g~~l~ 65 (227)
.+++|..+.||+|-.+.- +..+. +|..+.+.+.. .+++. +.+-+ .||.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v~--~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGIM--SVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCce--ecCEEEECCEEEE
Confidence 478998999999886544 44555 67777666543 23444 45554 5999998876543
No 171
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=76.26 E-value=10 Score=29.84 Aligned_cols=55 Identities=5% Similarity=-0.045 Sum_probs=34.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcC---CceEEEecCCCCCChhhhhhCCCCCcccEEEeC
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKG---VDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHG 60 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~ 60 (227)
.+++|+.++||+|..+..++...- -......+|.........+.+-. .+|+++.+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~--~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVM--SVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCc--cCCEEEEe
Confidence 467789999999998887776532 12334456655433333344443 69999863
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.20 E-value=4.2 Score=36.75 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=43.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCC---ceEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeee----HHHHHHHHHh
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGV---DYEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINE----SLTILEYIEE 76 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e----s~~I~~yL~~ 76 (227)
.+++|..+.||||..+.-+++..-+ .++...+|-...++...+.+- . .||.+..+|..+.+ -..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v-~-~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI-M-AVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC-c-ccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4889999999999987666554333 233334444343333333444 3 79999987765544 2345556554
Q ss_pred h
Q 036834 77 T 77 (227)
Q Consensus 77 ~ 77 (227)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.84 E-value=3.6 Score=37.11 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=43.5
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCc---eEEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeH----HHHHHHHHh
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVD---YEYFEEDPFNKSPKLLESNPIHKKVPVLIHGEKPINES----LTILEYIEE 76 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es----~~I~~yL~~ 76 (227)
.+++|..+.||||..+.-++...-+. ++...+|-...++...+.+- . .||.+..+|..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v-~-~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI-Q-GVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC-c-ccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999999877666554442 33334554443444444444 3 799999877655542 234455543
No 174
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=72.89 E-value=24 Score=23.28 Aligned_cols=58 Identities=5% Similarity=-0.103 Sum_probs=36.5
Q ss_pred eEEeccCCChHHHHHHHHHHH---c-CCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL---K-GVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~---~-gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l 64 (227)
+..++.++|+.|+++.-.|.. . +..+....+|......-..+.+.. .+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccEEEEEECCEEE
Confidence 456778899999987666553 2 345666667765433333455653 6998873 66543
No 175
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=72.61 E-value=21 Score=25.49 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=22.5
Q ss_pred eEEeccCCChHHHHHHHH----HHHcCCceEEEecCC
Q 036834 5 VKLLGIWPSPFVFRVKVA----LQLKGVDYEYFEEDP 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~----L~~~gi~~~~~~v~~ 37 (227)
+.-++.++||+|+.+.=. ....++++-.+.+|.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 556788999999984443 444556666666653
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=71.50 E-value=22 Score=23.74 Aligned_cols=58 Identities=10% Similarity=-0.045 Sum_probs=34.1
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 64 (227)
+.+|+.++|+.|+...-.+.. .+-.+....+|.....+-....+- . .+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v-~-~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI-M-GTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC-e-eccEEEEEECCeEE
Confidence 566777899999987766644 121355556665443332333444 3 699887 356544
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=67.60 E-value=29 Score=24.23 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPIN 65 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l~ 65 (227)
+..++.++|+.|+.+.-.+.. .++ ....+|... .+++.+..... .+|+++. +|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~-~~~l~~~~~v~-~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEK-APFLVEKLNIK-VLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEccc-CHHHHHHCCCc-cCCEEEEEECCEEEE
Confidence 456777899999987766644 344 445566544 33344433333 7999983 776654
No 178
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=66.71 E-value=40 Score=23.30 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=31.6
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKP 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (227)
+..++.++|+.|+...-.+ .+.|..+....+|.........+.+- . .+|+++ .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V-~-~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA-H-SVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC-c-cCCEEEEEECCEE
Confidence 5567788999998654332 33333345555665442333333444 3 799987 35543
No 179
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=66.67 E-value=3.9 Score=29.28 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=13.3
Q ss_pred cccEEEe--CCeeeeeHHHHHHHHHhhcC
Q 036834 53 KVPVLIH--GEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 53 ~vP~L~~--~g~~l~es~~I~~yL~~~~~ 79 (227)
.-|-|.+ +|..+.|+.||++|+.+-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4477854 67999999999999988663
No 180
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=65.44 E-value=32 Score=21.77 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=33.8
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCe
Q 036834 5 VKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEK 62 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~ 62 (227)
+..++.++|+.|+...-.+.. .++.+-.+..+ . ...+....... .+|+++. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~~v~-~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E-NPELAEEYGVR-SIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--C-ChhHHHhcCcc-cccEEEEEECCE
Confidence 667788899999988777766 66655544433 3 23333332333 6999873 554
No 181
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=61.10 E-value=42 Score=21.62 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=24.7
Q ss_pred eeHHHHHHHHHhhcCC--CCCCCCCHHHHHHHHHHHHHhhc
Q 036834 65 NESLTILEYIEETWQN--NPLLPQDPYERATVRFWAKFVDD 103 (227)
Q Consensus 65 ~es~~I~~yL~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~ 103 (227)
.|...|+.++...||+ ..+.+.+. ...++.|.....+
T Consensus 4 ~E~~~ll~~I~~aYP~~~~~f~~~~~--k~~v~~W~~~L~d 42 (71)
T PF11417_consen 4 EETAKLLKLIKAAYPQWAGNFKPTDS--KETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHHST---TT---STH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCcchhccchhhH--HHHHHHHHHHHHh
Confidence 3667899999999983 34545543 5678888888766
No 182
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=59.14 E-value=32 Score=23.24 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=30.2
Q ss_pred eEEeccCCChHHHHHHHHH--------HHcCCceEEEecCCCCC---ChhhhhhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVAL--------QLKGVDYEYFEEDPFNK---SPKLLESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~ 58 (227)
+..|+.++|++|+...-.+ ...+ .+....+|.... .+++....... .+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~-~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVF-GPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCC-CCCEEE
Confidence 5677889999999875332 2232 456666665432 23333332333 699887
No 183
>PTZ00051 thioredoxin; Provisional
Probab=58.36 E-value=45 Score=22.00 Aligned_cols=57 Identities=9% Similarity=-0.116 Sum_probs=31.9
Q ss_pred eEEeccCCChHHHHHHHHHHH---cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL---KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKP 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~---~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~ 63 (227)
+..++.++|+.|+...-.+.. ....+....+|......-..+.+- . .+|+++. +|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI-T-SMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC-c-eeeEEEEEeCCeE
Confidence 456788899999976554443 222234445555432222333444 3 6998873 5544
No 184
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=57.65 E-value=21 Score=24.91 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=31.2
Q ss_pred eEEe-ccCCChHHHHHHHHHHHcCCc---eEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLL-GIWPSPFVFRVKVALQLKGVD---YEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly-~~~~sp~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
++++ +-++||+|+.++-++....-. .+...+|... .+++...-... .+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v~-~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGVE-RVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCCC-cCCEEEE
Confidence 4455 567999999887777644321 2344455443 44444433333 7999984
No 185
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=56.79 E-value=9.5 Score=30.48 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhCCCcccccCCCCCcchhHHHHHHHhhhhHHHHHhcCCCccCccchHHHHHHHHhhcccccc
Q 036834 128 IEGLEKIDGAIKEKSSLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHTQKFPAIAEWTTKFVNHPVIK 201 (227)
Q Consensus 128 ~~~l~~le~~L~~~~~yl~~~~~G~~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
...++.++..|.+. +|. .|.+++-+|+.+|..+..- ... ..+++..+|+..+.....+.
T Consensus 10 ~~glk~l~~sLA~k-s~~----~g~~~s~edv~vf~al~~e-------p~s---~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEK-SYI----EGYQLSKEDVVVFAALGVE-------PQS---ARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcc-cCC----CCCCcccccceeehhcccC-------cch---hhhhHHHHHHHHHHHHHHHH
Confidence 45788899999998 999 9999999999988765211 111 56788888888877655543
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=55.17 E-value=46 Score=26.14 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=32.3
Q ss_pred ceEEecc---CCChHHHHHHHHHHHc-----CCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 4 EVKLLGI---WPSPFVFRVKVALQLK-----GVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 4 ~~~Ly~~---~~sp~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
.+++|.. ++||.|+.+.=.++.. ++.+..+.+|.+....-....+- . .+|+++.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V-~-~~Pt~~~ 83 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV-E-RVPTTII 83 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC-C-ccCEEEE
Confidence 3667777 8899999777666543 34444555554442322333344 3 6999984
No 187
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.73 E-value=24 Score=29.01 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=48.0
Q ss_pred ceEEeccCCC------hHHHHHHHHHHHcCCceEEEecCCCC-CChhhhhhC----CCCCcccEEEeCCeeeeeHHHHHH
Q 036834 4 EVKLLGIWPS------PFVFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESN----PIHKKVPVLIHGEKPINESLTILE 72 (227)
Q Consensus 4 ~~~Ly~~~~s------p~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~g~~l~es~~I~~ 72 (227)
.+++|..... -.|..||.+|+-.+|.|+.+.|.+.. ..+++..+- -.- .+|.+..+|..|.....|.+
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~-~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAV-SLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccC-ccCeEEEccEEeccHHHhhh
Confidence 3566654432 23778999999999999999998862 344443321 122 78988889999988877766
Q ss_pred H
Q 036834 73 Y 73 (227)
Q Consensus 73 y 73 (227)
-
T Consensus 211 L 211 (281)
T KOG2824|consen 211 L 211 (281)
T ss_pred h
Confidence 4
No 188
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=50.08 E-value=70 Score=21.32 Aligned_cols=52 Identities=8% Similarity=-0.079 Sum_probs=30.6
Q ss_pred eEEeccCCChHHHHHHHHHH-----HcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVALQ-----LKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
+..++.++|+.|+...-.+. +.|. +....+|......-..+.+- . .+|++..
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~~ 78 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGV-N-SYPSLYV 78 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCC-C-ccCEEEE
Confidence 45678889999997554442 2332 55566676543332334444 3 7999873
No 189
>PRK09381 trxA thioredoxin; Provisional
Probab=49.82 E-value=79 Score=21.38 Aligned_cols=58 Identities=5% Similarity=-0.185 Sum_probs=33.5
Q ss_pred eEEeccCCChHHHHHHHHHH----HcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQ----LKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l 64 (227)
+..++.++||.|+...-.+. ..+-.+....+|...........+. . .+|+++. +|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI-R-GIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC-C-cCCEEEEEeCCeEE
Confidence 45667789999997653332 2222355566666543333334555 3 7999873 66543
No 190
>PHA03075 glutaredoxin-like protein; Provisional
Probab=48.32 E-value=33 Score=24.39 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEeC-CeeeeeHHHHHHHHHhhc
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIHG-EKPINESLTILEYIEETW 78 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yL~~~~ 78 (227)
|-..+.|+|-|.|+-|..+.-+|....=+|+...|+... +. .-. |++=+|..+ +..+ -..+.+|+...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fF--sK~-g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FF--SKD-GQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----ee--ccC-CceEEEecccceeh--HHHHHHhhcccE
Confidence 556689999999999999999999988899999887642 11 111 377777653 3222 234667776544
No 191
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=47.03 E-value=39 Score=25.56 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.1
Q ss_pred ceEEeccCCChHHHH----HHHHHHHc-CCceEEEecCCC
Q 036834 4 EVKLLGIWPSPFVFR----VKVALQLK-GVDYEYFEEDPF 38 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~----v~~~L~~~-gi~~~~~~v~~~ 38 (227)
++++|+...||||.. ++-+++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 478999999999984 55555666 888888888764
No 192
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.67 E-value=81 Score=20.64 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=32.8
Q ss_pred eEEeccCCChHHHHHHHHHHHc----CCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 036834 5 VKLLGIWPSPFVFRVKVALQLK----GVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKP 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 63 (227)
+..++.++|+.|+...-.+... +-.+....+|......-..+.+-. .+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ--ALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC--CCCEEEEEeCCEE
Confidence 4556778899999765555432 223555666665433322334443 699998 35544
No 193
>PRK10996 thioredoxin 2; Provisional
Probab=45.22 E-value=1.2e+02 Score=22.00 Aligned_cols=58 Identities=3% Similarity=-0.097 Sum_probs=34.4
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l 64 (227)
+..++.++|+.|+...-.+.. .+-.+....+|......-....+- . .+|+++. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V-~-~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI-R-SIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC-C-ccCEEEEEECCEEE
Confidence 556778899999975433332 233455666676553333334554 3 6999873 66544
No 194
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=43.00 E-value=82 Score=21.66 Aligned_cols=69 Identities=10% Similarity=-0.020 Sum_probs=40.3
Q ss_pred EeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChh---hhhh---CCCCCcccEEEeCCe-eeeeHHHHHHHHHhh
Q 036834 7 LLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPK---LLES---NPIHKKVPVLIHGEK-PINESLTILEYIEET 77 (227)
Q Consensus 7 Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~---~~~~---~p~~~~vP~L~~~g~-~l~es~~I~~yL~~~ 77 (227)
|+|...||+|.+..-.+...+-.-....++.. ....+ ...+ +... .+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADS-RLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcC-eeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 56788999999988887777653333333331 11111 1111 1221 3333 55665 999999998886653
No 195
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=42.88 E-value=1.4e+02 Score=22.23 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=34.0
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCCCChhhh-hhCCCC----CcccEEE--eCCeeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFNKSPKLL-ESNPIH----KKVPVLI--HGEKPIN 65 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~----~~vP~L~--~~g~~l~ 65 (227)
+..|+.++||.|+...-.+.. .+-.++...+|.... ++.. +.+-.+ +++|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 567788899999976544322 223355666666543 3333 233211 1389988 3676654
No 196
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.35 E-value=1e+02 Score=20.45 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=30.5
Q ss_pred eEEeccCCChHHHHHHHHHH-----HcCCceEEEecCCCCCChhhh-hhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVALQ-----LKGVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~ 59 (227)
+..++.++|+.|+...=.+. ..+..+....+|... .+.+. ..+- . .+|++..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~-~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-T-ALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-c-ccCEEEE
Confidence 56678889999987553332 223445555666544 33333 3444 3 6999973
No 197
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=41.58 E-value=1.1e+02 Score=20.79 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=30.9
Q ss_pred ceEEeccCCChHHHHHHHHH-----HHcCCceEEEecCCCCCChhhh-hhCCCCCcccEEE
Q 036834 4 EVKLLGIWPSPFVFRVKVAL-----QLKGVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLI 58 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L-----~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (227)
-+..|+.++||.|++..-.+ .+.+-.+....++.......+. +..... .+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~-~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK-SFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC-cCCEEE
Confidence 36678889999999765433 2334345555566543222222 223333 799887
No 198
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=40.35 E-value=48 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=25.9
Q ss_pred cceEEeccCCChHHHH----HHHHHHHcCCceEEEecCC
Q 036834 3 TEVKLLGIWPSPFVFR----VKVALQLKGVDYEYFEEDP 37 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~----v~~~L~~~gi~~~~~~v~~ 37 (227)
+++.+|+...||||.- +.-++...+++++.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4788999999999984 4555566777777776654
No 199
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=39.18 E-value=1.3e+02 Score=20.99 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=32.4
Q ss_pred eEEeccCCChHHHHHHHHHHH------cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe---CCeeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL------KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH---GEKPIN 65 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~---~g~~l~ 65 (227)
+.-++-++|+.|+...-.+.. .+..|..+.++-.. .+.....+..|+-+|+++. +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 445677899999987544444 22345444444322 1222344554434999873 455543
No 200
>PTZ00102 disulphide isomerase; Provisional
Probab=38.98 E-value=2e+02 Score=25.34 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=44.4
Q ss_pred eEEeccCCChHHHHHHHH-------HHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee-----eeHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVA-------LQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKPI-----NESLTI 70 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~-------L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l-----~es~~I 70 (227)
+..++.++|+.|++..=. +...+-++....+|......-..+.+-. .+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR--GYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC--cccEEEEEECCceEEecCCCCHHHH
Confidence 567788999999976421 2223445666777765433333344542 599886 244321 355678
Q ss_pred HHHHHhhcC
Q 036834 71 LEYIEETWQ 79 (227)
Q Consensus 71 ~~yL~~~~~ 79 (227)
.+|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 999988753
No 201
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=38.61 E-value=1.1e+02 Score=19.84 Aligned_cols=53 Identities=6% Similarity=-0.140 Sum_probs=30.6
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
+..++.++|+.|+...-.+.. .+-.+....+|......-..+.+-. .+|+++.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~P~~~~ 74 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR--SIPTLLL 74 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC--cCCEEEE
Confidence 455677889999976544432 2223555566655433333344442 6999873
No 202
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=38.59 E-value=1e+02 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.8
Q ss_pred eEEeccCCChHHHHHH
Q 036834 5 VKLLGIWPSPFVFRVK 20 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~ 20 (227)
+..++.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5667788999999865
No 203
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=35.62 E-value=43 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=20.9
Q ss_pred ccEEE-eCCeeeeeHHHHHHHHHhhcC
Q 036834 54 VPVLI-HGEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 54 vP~L~-~~g~~l~es~~I~~yL~~~~~ 79 (227)
+|.+. .+|.+++.|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 699999999999999988653
No 204
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=35.20 E-value=82 Score=25.25 Aligned_cols=22 Identities=0% Similarity=0.082 Sum_probs=17.7
Q ss_pred ceEEeccCCChHHHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQL 25 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~ 25 (227)
.+.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4778899999999998766654
No 205
>PRK09266 hypothetical protein; Provisional
Probab=34.93 E-value=68 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHcCCceEEEecCCCC--CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhcC
Q 036834 22 ALQLKGVDYEYFEEDPFN--KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETWQ 79 (227)
Q Consensus 22 ~L~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~~ 79 (227)
.+...|+++++..+.+.+ ..++..-.|...+-+||-..++..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 456679999999887652 2334444566544889999888877655678888877663
No 206
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=1.6e+02 Score=26.67 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=49.0
Q ss_pred eEEeccCCChHHHH-------HHHHHHHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCee------eeeHHH
Q 036834 5 VKLLGIWPSPFVFR-------VKVALQLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKP------INESLT 69 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~-------v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~------l~es~~ 69 (227)
++-||-|||..|.+ +.-.|.+.|-+.....||-......-.+..-. -.|+|.. +|.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~--gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR--GYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC--CCCeEEEEecCCcceeccCcccHHH
Confidence 46678888888875 34455555668888899876433333334443 4899984 5543 466778
Q ss_pred HHHHHHhhcC
Q 036834 70 ILEYIEETWQ 79 (227)
Q Consensus 70 I~~yL~~~~~ 79 (227)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999988864
No 207
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.87 E-value=50 Score=20.42 Aligned_cols=33 Identities=18% Similarity=-0.065 Sum_probs=20.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCceEEEecCC
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDP 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~ 37 (227)
.+||......-+..++-+|+..||++.......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 368888777789999999999999998876554
No 208
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.97 E-value=31 Score=24.48 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCceEEEecCCCC-CChhhhhhCCCCCcccEEEe---CCeeeeeHHHHHHHHHhhc
Q 036834 16 VFRVKVALQLKGVDYEYFEEDPFN-KSPKLLESNPIHKKVPVLIH---GEKPINESLTILEYIEETW 78 (227)
Q Consensus 16 ~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~---~g~~l~es~~I~~yL~~~~ 78 (227)
....+=+....|++.+-...+-.. ...+-....|+.|-+|+++| .-.+.-|..-|+.||.++.
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344566677788887765444221 11111123444458888875 4577788888999998863
No 209
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=32.90 E-value=1.2e+02 Score=20.55 Aligned_cols=56 Identities=11% Similarity=-0.123 Sum_probs=32.1
Q ss_pred eEEeccCCChHHHHHHHHHHHc-----C-C----ceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCe
Q 036834 5 VKLLGIWPSPFVFRVKVALQLK-----G-V----DYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEK 62 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~ 62 (227)
+..++.++|+.|+...-.+... + . .+....+|......-..+.+- . .+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v-~-~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI-N-KYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC-C-cCCEEEEEeCCc
Confidence 4567888999999776555321 1 1 244555665543333334444 3 6999973 444
No 210
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=32.65 E-value=1e+02 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=25.6
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCceEEEe
Q 036834 4 EVKLLGIWPSPFVFRVKVALQLKGVDYEYFE 34 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~ 34 (227)
.-.|...+..|...-++.+++++|||++...
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 3456677788999999999999999998764
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=32.30 E-value=66 Score=24.76 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=18.3
Q ss_pred ceEEeccCCChHHHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQL 25 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~ 25 (227)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4678888999999999887764
No 212
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=31.11 E-value=1.5e+02 Score=20.35 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.5
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeeeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPINE 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l~e 66 (227)
+..++.++|+.|+.+.-.++. .++. ...+|.... .+.+..-.. .+|+++. +|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~--f~~vd~~~~--~l~~~~~i~-~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETK--FVKINAEKA--FLVNYLDIK-VLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcE--EEEEEchhh--HHHHhcCCC-cCCEEEEEECCEEEEE
Confidence 456778899999976555432 3443 344554432 333322223 6999983 7766544
No 213
>PHA02278 thioredoxin-like protein
Probab=30.97 E-value=1.8e+02 Score=19.93 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=30.5
Q ss_pred eEEeccCCChHHHHHHHHHHHc----CCceEEEecCCCCC---Chhhh-hhCCCCCcccEEEe--CCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQLK----GVDYEYFEEDPFNK---SPKLL-ESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~----gi~~~~~~v~~~~~---~~~~~-~~~p~~~~vP~L~~--~g~~l 64 (227)
+.-++-++|+.|+.+.=.+... +.......+|.... .+++. ..+.. .+|+++. +|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~--~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM--STPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc--cccEEEEEECCEEE
Confidence 3445678899999765443222 22223344444321 23333 34553 6999983 66554
No 214
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=30.76 E-value=2e+02 Score=20.36 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=31.7
Q ss_pred EEeccCCChHHHHHHHHHHHcCCc----eEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeee
Q 036834 6 KLLGIWPSPFVFRVKVALQLKGVD----YEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l 64 (227)
.-++-++|+.|+.+.=.+...--. .....||... .+++....-.. .+|++.. +|..+
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V~-~iPTf~~fk~G~~v 81 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYELY-DPPTVMFFFRNKHM 81 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCCC-CCCEEEEEECCEEE
Confidence 336778999999765555332211 3444556554 34444332323 6999983 66554
No 215
>PF13728 TraF: F plasmid transfer operon protein
Probab=30.71 E-value=1.7e+02 Score=23.14 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=35.9
Q ss_pred eEEeccCCChHHHH----HHHHHHHcCCceEEEecCCC------C---CChhhhhhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFR----VKVALQLKGVDYEYFEEDPF------N---KSPKLLESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~----v~~~L~~~gi~~~~~~v~~~------~---~~~~~~~~~p~~~~vP~L~ 58 (227)
+.+++.+.||+|+. ++.+....|+++..+.+|-. + .......++. . .+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~-~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-K-VTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-C-cCCEEE
Confidence 56677789999984 77888889998888877622 1 1222334555 3 789886
No 216
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=30.39 E-value=1.6e+02 Score=19.26 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=30.0
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcC--CceEEEecCCCCCChhhhhhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QLKG--VDYEYFEEDPFNKSPKLLESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (227)
+..++.++|+.|+...=.+ ...+ -.+....+|......-....+. . .+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~ 78 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV-R-GYPTLL 78 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC-C-cCCEEE
Confidence 4567788999999653222 3333 2455666666543333334444 3 699887
No 217
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=30.02 E-value=1.6e+02 Score=19.26 Aligned_cols=53 Identities=13% Similarity=-0.099 Sum_probs=28.2
Q ss_pred eEEeccCCChHHHHHHH----HHHHcC--CceEEEecCCCC-CChhhh-hhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKV----ALQLKG--VDYEYFEEDPFN-KSPKLL-ESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~----~L~~~g--i~~~~~~v~~~~-~~~~~~-~~~p~~~~vP~L~~ 59 (227)
+.+|+.++|+.|+...= +..... -.+....+|... ..+.+. ..+. . .+|+++.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~-~~Pt~~~ 81 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-K-GFPTFKY 81 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-c-cccEEEE
Confidence 56778889999997632 222211 224444455433 133333 3343 3 6898873
No 218
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=29.50 E-value=1.7e+02 Score=19.37 Aligned_cols=51 Identities=10% Similarity=-0.166 Sum_probs=29.2
Q ss_pred eEEeccCCChHHHHHHHHHH----HcCCceEEEecCCCCCChhhh-hhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVALQ----LKGVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~----~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (227)
+..|+.++|+.|++..=.+. ..+-.+....+|... .+++. ..+- . .+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~-~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-R-AYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-C-cccEEE
Confidence 56678889999987543332 222124555566554 33333 3344 3 699987
No 219
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=29.29 E-value=62 Score=21.95 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=14.0
Q ss_pred ceEEeccCCChHHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQ 24 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~ 24 (227)
.+.+++.++||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 356778899999998755554
No 220
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=28.87 E-value=1.8e+02 Score=19.40 Aligned_cols=53 Identities=11% Similarity=-0.107 Sum_probs=29.2
Q ss_pred eEEeccCCChHHHHHHHHH-----HH--cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QL--KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 59 (227)
+..|+.++||.|++..-.+ .+ .+..+....+|......-....+.. .+|++..
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~--~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVR--GYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc--cccEEEE
Confidence 4556778899999654333 22 1444555555554322222334553 6999973
No 221
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=28.77 E-value=1.7e+02 Score=19.13 Aligned_cols=51 Identities=10% Similarity=-0.138 Sum_probs=29.2
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (227)
+.+++.++|+.|+...=.+ ...+ .+....+|......-....+.. .+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~--~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVR--GFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCC--ccCEEE
Confidence 5567788999999754322 2222 2445555554433333455553 599886
No 222
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=28.61 E-value=87 Score=19.98 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=17.1
Q ss_pred eEEeccCCChHHHHHHHHHHHc
Q 036834 5 VKLLGIWPSPFVFRVKVALQLK 26 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~ 26 (227)
+.+|..+.||+|+...-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999877666653
No 223
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=28.56 E-value=89 Score=25.37 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=16.7
Q ss_pred ceEEeccCCChHHHHHHHHHH
Q 036834 4 EVKLLGIWPSPFVFRVKVALQ 24 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~ 24 (227)
.+.+|..+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 367788899999999876654
No 224
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=28.27 E-value=2.4e+02 Score=20.70 Aligned_cols=76 Identities=11% Similarity=-0.045 Sum_probs=45.3
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCceEEEecCCC-CCChhhhhhCCCCC-c--ccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 3 TEVKLLGIWPSPFVFRVKVALQLKGVDYEYFEEDPF-NKSPKLLESNPIHK-K--VPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~--vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
+++++++.-.||+|-...-+|..+.-.=.....++- ...-..+...+... . .=+++.+|..+.+|.|+++-+...-
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 678899999999998766666665444333333221 11222222222220 1 1223458999999999999887764
No 225
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=27.82 E-value=3.5e+02 Score=23.50 Aligned_cols=73 Identities=11% Similarity=0.019 Sum_probs=43.2
Q ss_pred eEEeccCCChHHHHHHHHH-----HH--cCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCee-------eeeHH
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QL--KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKP-------INESL 68 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~-------l~es~ 68 (227)
+.+++.++|+.|++..-.+ .. .+-.+....+|......-....+- . .+|++.. +|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i-~-~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV-S-GYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC-c-cccEEEEEeCCccceeEecCCCCHH
Confidence 5678889999999764222 22 333466666776543322234444 3 6898863 4432 13566
Q ss_pred HHHHHHHhhcC
Q 036834 69 TILEYIEETWQ 79 (227)
Q Consensus 69 ~I~~yL~~~~~ 79 (227)
.|.+|+.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888877654
No 226
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=27.73 E-value=1.7e+02 Score=18.67 Aligned_cols=51 Identities=8% Similarity=-0.158 Sum_probs=31.1
Q ss_pred eEEeccCCChHHHHHHHHHHH----c--CCceEEEecCCCCCChhhh-hhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----K--GVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~--gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (227)
+.+|+.++|+.|+...-.+.. . +-.+....++... .+.+. ..+- . .+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~-~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-R-GYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-C-CCCEEE
Confidence 567788899999986555533 2 3445556666544 33333 3444 3 689886
No 227
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=27.66 E-value=1.7e+02 Score=18.58 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.6
Q ss_pred cccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 53 KVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 53 ~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
+=||+.-+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 459988777 8899999999998833
No 228
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.20 E-value=2.9e+02 Score=20.92 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=32.9
Q ss_pred eEEeccCCChHHHHHHHHH---HHcCCceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeeeeeH
Q 036834 5 VKLLGIWPSPFVFRVKVAL---QLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPINES 67 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L---~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l~es 67 (227)
+..++.++|+.|+.+.-.| +..--.+....|+.... .+....+.. .+|+++. +|..+..-
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~-~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTD-ALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCC-CCCEEEEEECCEEEEEE
Confidence 3446778899998654322 22222344555555432 333334443 7999984 77666543
No 229
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=25.95 E-value=2.1e+02 Score=19.14 Aligned_cols=57 Identities=9% Similarity=-0.104 Sum_probs=30.2
Q ss_pred eEEeccCCChHHHHHHHHHHH----cC-CceEEEecCCCCCChhhhhhCCCCCcccEEEe--CCeee
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----KG-VDYEYFEEDPFNKSPKLLESNPIHKKVPVLIH--GEKPI 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~--~g~~l 64 (227)
+..|+.++|+.|+...-.+.. .+ -......++.. ......+.+- . .+|++.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v-~-~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG-K-CEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC-C-cCcEEEEEECCEEE
Confidence 456677899999976543322 22 12334444444 2233334444 3 6898873 66543
No 230
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=25.85 E-value=1.6e+02 Score=20.81 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhchhhHHHHHHhcc----ChhhHHHHHHHHHHHHHHHHHhhhhCCC
Q 036834 68 LTILEYIEETWQNNPLLPQDPYERATVRFWAKFVDDLFWNKAFAAFIA----KGEAKEKIEKEVIEGLEKIDGAIKEKSS 143 (227)
Q Consensus 68 ~~I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (227)
.+.++||....+ ++-........-..+.+.+.+.+...+...+-. ....+....++.......|+..|++-
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V-- 83 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLASV-- 83 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 467888887654 332111111112234455555555555444433 23456666777888888899999863
Q ss_pred cccccCCCCCcchhHHHHHH
Q 036834 144 LFNSAAGGESIGFLDIVFGV 163 (227)
Q Consensus 144 yl~~~~~G~~~t~aDi~l~~ 163 (227)
.+..+|-.-+.+..
T Consensus 84 ------~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 84 ------WNQKATNEQIAFIE 97 (113)
T ss_pred ------HcCCCCHHHHHHHH
Confidence 23556666555443
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=25.11 E-value=1.9e+02 Score=18.68 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=34.1
Q ss_pred ceEEeccCCChHHHHH----HHHH-HHcCCceEEEecCCCCCChhhhhhCCCCCcccEEE
Q 036834 4 EVKLLGIWPSPFVFRV----KVAL-QLKGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI 58 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v----~~~L-~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 58 (227)
.+.||-...+|.+++. +-+| .+.+-+|+...+|..+ .|+..+..-.- -.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~iv-AtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKIV-ATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCEE-Eechhh
Confidence 4688888887777753 3333 3457789999999865 45544444333 457765
No 232
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=24.34 E-value=1.3e+02 Score=21.06 Aligned_cols=51 Identities=4% Similarity=-0.087 Sum_probs=30.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCc----eEEEecCCCCCChhhh--hhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVALQLKGVD----YEYFEEDPFNKSPKLL--ESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~--~~~p~~~~vP~L~ 58 (227)
+..|+-++|+.|+...-.+.+..-. .....||... .+... +.+.. .+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I~--~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHFF--YFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCCc--ccCEEE
Confidence 4567889999999876555543322 4445566543 33332 23442 699987
No 233
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.99 E-value=1.5e+02 Score=22.33 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=21.8
Q ss_pred ceEEeccCCChHHHH----HHHHHHHc--CCceEEEec
Q 036834 4 EVKLLGIWPSPFVFR----VKVALQLK--GVDYEYFEE 35 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~----v~~~L~~~--gi~~~~~~v 35 (227)
++.+|..+.||||.. ++-+.+.. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 488999999999984 44444454 666666543
No 234
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=23.87 E-value=2.8e+02 Score=19.80 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=34.4
Q ss_pred EeccCCChHHHHHHH-------HHHHcCCceEEEecCCCCCChhhhh---------hCCCCCcccEEEe---CCeeeeeH
Q 036834 7 LLGIWPSPFVFRVKV-------ALQLKGVDYEYFEEDPFNKSPKLLE---------SNPIHKKVPVLIH---GEKPINES 67 (227)
Q Consensus 7 Ly~~~~sp~~~~v~~-------~L~~~gi~~~~~~v~~~~~~~~~~~---------~~p~~~~vP~L~~---~g~~l~es 67 (227)
.++..+|++|++.-- +....+=.|..+.+|.... ++... .+.. -+|+++. +|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~--G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQG--GWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCC--CCCEEEEECCCCCEEeee
Confidence 356778999997632 2222233678888887642 32221 1332 4898873 67777776
No 235
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.15 E-value=1.3e+02 Score=19.68 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHcCCceEEEec
Q 036834 12 PSPFVFRVKVALQLKGVDYEYFEE 35 (227)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~~~~~~v 35 (227)
.-+|++|+.-.|+..||+|+..+-
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecC
Confidence 347999999999999999998854
No 236
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=22.96 E-value=2.4e+02 Score=18.74 Aligned_cols=53 Identities=11% Similarity=-0.137 Sum_probs=28.9
Q ss_pred ceEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCC-CChhhh-hhCCCCCcccEEE
Q 036834 4 EVKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFN-KSPKLL-ESNPIHKKVPVLI 58 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~-~~~~~~-~~~p~~~~vP~L~ 58 (227)
-+..++.++|+.|+...-.+.. .+-.+....++... ..+.+. +.+- . .+|++.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~-~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-Q-GFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-C-cCCEEE
Confidence 3667788899999875433322 22223444455443 123333 3444 3 699987
No 237
>PRK13949 shikimate kinase; Provisional
Probab=22.92 E-value=1.4e+02 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=27.4
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEEE
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEYF 33 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~ 33 (227)
|. ++.|.|.+.|+-+.-.+++.+..|++|-..
T Consensus 1 m~-~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MA-RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 54 799999999999999999999999876543
No 238
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.50 E-value=1.3e+02 Score=22.52 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=21.5
Q ss_pred eEEeccCCChHHHH----HHHHHHHcCCceEEEecC
Q 036834 5 VKLLGIWPSPFVFR----VKVALQLKGVDYEYFEED 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~----v~~~L~~~gi~~~~~~v~ 36 (227)
+.+|....||||.. ++-+....+++++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 46788899999985 344444557666666553
No 239
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.40 E-value=1.4e+02 Score=16.37 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.8
Q ss_pred cccEEEeCCeeeeeHHHHHHHHH
Q 036834 53 KVPVLIHGEKPINESLTILEYIE 75 (227)
Q Consensus 53 ~vP~L~~~g~~l~es~~I~~yL~ 75 (227)
.+|....++..+.....|.+|++
T Consensus 26 ~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 26 ELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCeEEeCCeEEEeHHHHHHHHh
Confidence 78887777888888888888875
No 240
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=22.28 E-value=45 Score=24.46 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=23.9
Q ss_pred CChhhhhhCCCCCcccEEEeCCeeeeeHHHHHHHHHhhc
Q 036834 40 KSPKLLESNPIHKKVPVLIHGEKPINESLTILEYIEETW 78 (227)
Q Consensus 40 ~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (227)
.+.++.-.-|.| +|+|+-|...-.++..|++||...-
T Consensus 77 Isae~i~pYPPG--IPll~pGE~it~~~~~~i~yl~~l~ 113 (136)
T PF03711_consen 77 ISAEFIVPYPPG--IPLLVPGERITEETEEIIDYLLALQ 113 (136)
T ss_dssp BBSS-BEECTTT--S-SB-TTEEB-STTHHHHHHHHHHH
T ss_pred EEEeeeeecCCC--CcEECCccccccchHHHHHHHHHHH
Confidence 444555556766 9998877666677899999987643
No 241
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=21.50 E-value=4.2e+02 Score=21.11 Aligned_cols=71 Identities=10% Similarity=-0.013 Sum_probs=39.3
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCceEEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee------eeHHHHH
Q 036834 5 VKLLGIWPSPFVFRVKVALQL-----KGVDYEYFEEDPFNKSPKLLESNPIHKKVPVLI--HGEKPI------NESLTIL 71 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l------~es~~I~ 71 (227)
+..++-++|+.|+...=.+.. +| .+....+|......-..+.+- . .+|++. .+|..+ .....|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I-~-~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAI-K-GYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCC-C-cCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 566788999999865443322 33 244455665443222233444 3 699887 355433 2344566
Q ss_pred HHHHhhc
Q 036834 72 EYIEETW 78 (227)
Q Consensus 72 ~yL~~~~ 78 (227)
+|+.+.+
T Consensus 133 ~fi~~~~ 139 (224)
T PTZ00443 133 AFALGDF 139 (224)
T ss_pred HHHHHHH
Confidence 6666655
No 242
>PRK13947 shikimate kinase; Provisional
Probab=21.03 E-value=1.5e+02 Score=21.77 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=27.3
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEE
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEY 32 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~ 32 (227)
|. ++.|.|.+.|+-+...+.+.+..|++|-.
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 66 69999999999999999999999998744
No 243
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.03 E-value=3.3e+02 Score=19.68 Aligned_cols=52 Identities=6% Similarity=-0.117 Sum_probs=26.9
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCceEEEecCCCCC-Chh-hhhhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVALQL----KGVDYEYFEEDPFNK-SPK-LLESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~~~~~~v~~~~~-~~~-~~~~~p~~~~vP~L~ 58 (227)
+..|+.++|+.|+...=.+.. .+-.+..+.++.... ... ....+-. .+|+++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~--~iPt~v 81 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVD--GIPHFV 81 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCC--CCCEEE
Confidence 445667789999876544432 222234444444321 122 3334443 589887
No 244
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=20.71 E-value=1.7e+02 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=27.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCceEE
Q 036834 1 MATEVKLLGIWPSPFVFRVKVALQLKGVDYEY 32 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~ 32 (227)
|+..+.|.|.+.|+-+-..+.+.+..|++|-.
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 66678999999999999999999999998743
No 245
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=20.62 E-value=1.8e+02 Score=20.44 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=34.7
Q ss_pred eEEeccCC--ChHHHHHHHHHHHcCCc----eEEEecCCCCCChhhh-hhCCCCCcccEEEe--CCeeeee
Q 036834 5 VKLLGIWP--SPFVFRVKVALQLKGVD----YEYFEEDPFNKSPKLL-ESNPIHKKVPVLIH--GEKPINE 66 (227)
Q Consensus 5 ~~Ly~~~~--sp~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~--~g~~l~e 66 (227)
+..++-.+ ||-|+.+.-.|...--. +....++..+.. ++. ..+-. .+|+|+. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~--sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVL--RTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCC--cCCEEEEEECCEEEEE
Confidence 45566664 99999877666443333 334455655433 433 34553 5999983 7766544
No 246
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=20.28 E-value=2.3e+02 Score=23.23 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred hhHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHhhhhCCCcccc------cCCCCCcchhHHHHHHHh
Q 036834 105 FWNKAFAAFIA-KGEAKEKIEKEVIEGLEKIDGAIKEKSSLFNS------AAGGESIGFLDIVFGVIG 165 (227)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~yl~~------~~~G~~~t~aDi~l~~~l 165 (227)
+...+...+.. +....+....++...+..+|.+|+.+..|+|| .+.|....-.|..-+..-
T Consensus 109 ~~~~~~~ay~~~d~~~~~~~~~~~l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR 176 (267)
T PF12972_consen 109 LYQQLVDAYNSKDIEAFKALSARFLELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNAR 176 (267)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444333 44567777888999999999999887345521 012556666776665543
No 247
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=20.08 E-value=2.8e+02 Score=18.53 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=28.0
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcCCceEEEecCCCCCChhhh-hhCCCCCcccEEE
Q 036834 5 VKLLGIWPSPFVFRVKVAL-----QLKGVDYEYFEEDPFNKSPKLL-ESNPIHKKVPVLI 58 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 58 (227)
+..++-++|+.|+...=.+ .+.++. ...+|..+..+.+. ..+- . .+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~~~~~~l~~~~~V-~-~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEESSIKPSLLSRYGV-V-GFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECCCCCHHHHHhcCC-e-ecCEEE
Confidence 4566778899998766444 334443 34455442233333 3344 3 689887
No 248
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.02 E-value=1.3e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=21.1
Q ss_pred eEEeccCCChHHHH----HHHHHHHc----CCceEEEecCC
Q 036834 5 VKLLGIWPSPFVFR----VKVALQLK----GVDYEYFEEDP 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~----v~~~L~~~----gi~~~~~~v~~ 37 (227)
+.+|....||||.. ++-++... ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 46888999999994 44444454 46555555543
Done!