BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036835
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 163/244 (66%), Gaps = 7/244 (2%)
Query: 1 MVVVSVPCMNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
M V V M GG GE SYA NS IQR VIS P E I ++S + +ADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNTFLVISKIIETIHKLYHQVNKK-LPEFQVFLNDLPGNDFNSIFESLPDFYKRIKK 118
SSGPN ++++I+T+ +L ++ ++ PE+Q+FLNDLPGNDFN+IF SLP I+
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----IEN 115
Query: 119 DKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPS 178
D G CFI G+PGSFY RLF +++FIHSSYS+ WLS+VP +E+NK NIY+ + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175
Query: 179 VCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADPSSKDCCRLWELLTKALIQ 238
V A+ +QFQ D + FL R++E+V GGRM LT +GR D +S +CC +W+LL AL Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235
Query: 239 LVNE 242
+V+E
Sbjct: 236 MVSE 239
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 158/251 (62%), Gaps = 15/251 (5%)
Query: 1 MVVVSVPCMNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPG---CFNVADL 57
M + V MNGG G+ SYAKNS + V++K P LE+ ++++ ++ P C VADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNTFLVISKIIETIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYKR 115
GC+SGPNT L + I+++I K+ + +L P Q+FLNDL NDFNS+F+ LP FY++
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 IKKD---KFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENL------ETNK 166
++K+ K G C I MPGSFY RLF S++F+HS Y + WLS+VP L TNK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180
Query: 167 RNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADPSSKDCC 226
+IY +K+S V +A+L+QF +DF+ FL + SEE+ S GRM LT I + + + +++
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV-ELDARNAI 239
Query: 227 RLWELLTKALI 237
L E+ L+
Sbjct: 240 DLLEMAINDLV 250
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 147/227 (64%), Gaps = 15/227 (6%)
Query: 1 MVVVSVPCMNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPG---CFNVADL 57
M + V MNGG G+ SYAKNS +I + P LE+ I+++ ++ P CF V DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNTFLVISKIIETIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYKR 115
GC+SGPNTF + I+++I K+ + +L P Q+FLNDL NDFNS+F+ LP FY+
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 IKKD---KFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLET------NK 166
++K+ K G C I MPGSFY RLF S++F+HS Y +HWLS+VP L T NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179
Query: 167 RNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFI 213
IY +K+S P + +A+L+QF +DF+ FL + SEE++S GRM LTFI
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI 226
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 127/233 (54%), Gaps = 13/233 (5%)
Query: 9 MNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMF--SSSFPGCFNVADLGCSSGPNTF 66
M GG+G+ SYA NS Q LEET++++ SS+ P F DLGCSSG NT
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 68
Query: 67 LVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKR------IKKDK 120
+I I++ I K + PEF F +DLP NDFN++F+ LP + D
Sbjct: 69 HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 128
Query: 121 FGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIY-----ITKSS 175
F+AG+PGSFY RLF +R+I+F HS++S+HWLS+VPE++ + Y +
Sbjct: 129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188
Query: 176 PPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADPSSKDCCRL 228
A+ QFQ D + FL R+ E+ GG MFL +GR+ DP+ + L
Sbjct: 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGL 241
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 213
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 49 PGCFNVAD---LGCSSGPNTFLVISKIIETIHKLYHQVNKK 86
P C+ + D +GCS L ++KIIE K+Y N K
Sbjct: 41 PKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 49 PGCFNVAD---LGCSSGPNTFLVISKIIETIHKLYHQVNKK 86
P C+ + D +GCS L ++KIIE K+Y N K
Sbjct: 41 PKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81
>pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3RAF|A Chain A, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAF|B Chain B, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|A Chain A, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|B Chain B, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|A Chain A, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|B Chain B, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
Length = 496
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 23 DIQRTVISKAWPFLEETIKD--MFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLY 80
DI++ + AW F ++T K+ + ++FP G S+G T + + E I
Sbjct: 133 DIEKKTVPFAWNF-DDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAV 191
Query: 81 HQVNKKLPEFQVFLNDLPGNDF 102
+ ++ + + LPG DF
Sbjct: 192 YMIDHPTAKIDKLMEFLPGPDF 213
>pdb|3K65|A Chain A, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 116
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 101 DFNSIFESLPDFYKRIKKDKFGP-CFIAGMPGSF 133
DFNS + + +F + D+ G C++AG PG F
Sbjct: 52 DFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDF 85
>pdb|2HPQ|P Chain P, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
Length = 79
Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 101 DFNSIFESLPDFYKRIKKDKFGP-CFIAGMPGSF 133
DFNS + + +F + D+ G C++AG PG F
Sbjct: 38 DFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDF 71
>pdb|3E6P|L Chain L, Crystal Structure Of Human Meizothrombin Desf1
Length = 158
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 100 NDFNSIFESLPDFYKRIKKDKFGP-CFIAGMPGSF 133
DFNS + + +F + D+ G C++AG PG F
Sbjct: 44 QDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDF 78
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 100 NDFNSIFESLPDFYKRIKKDKFGP-CFIAGMPGSF 133
DFNS + + +F + D+ G C++AG PG F
Sbjct: 51 QDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDF 85
>pdb|4ARM|A Chain A, Structure Of The Inactive Pesticin T201a Mutant
Length = 359
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 RGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKI 72
RG+ +Y K T+ L D FS G FN A++G + +
Sbjct: 236 RGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTAL 295
Query: 73 IETIHKLYHQVNKKLPEF--QVFLNDLPG--NDFNSIFESLPDFYKR 115
+ ++ ++++ P +V D G N FN+I + + D KR
Sbjct: 296 VSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKR 342
>pdb|4ARL|A Chain A, Structure Of The Inactive Pesticin D207a Mutant
pdb|4ARL|B Chain B, Structure Of The Inactive Pesticin D207a Mutant
Length = 359
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 RGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKI 72
RG+ +Y K T+ L D FS G FN A++G + +
Sbjct: 236 RGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTAL 295
Query: 73 IETIHKLYHQVNKKLPEF--QVFLNDLPG--NDFNSIFESLPDFYKR 115
+ ++ ++++ P +V D G N FN+I + + D KR
Sbjct: 296 VSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKR 342
>pdb|4AQN|A Chain A, Crystal Structure Of Pesticin From Y. Pestis
pdb|4AQN|B Chain B, Crystal Structure Of Pesticin From Y. Pestis
Length = 357
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 RGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKI 72
RG+ +Y K T+ L D FS G FN A++G + +
Sbjct: 236 RGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTAL 295
Query: 73 IETIHKLYHQVNKKLPEF--QVFLNDLPG--NDFNSIFESLPDFYKR 115
+ ++ ++++ P +V D G N FN+I + + D KR
Sbjct: 296 VSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKR 342
>pdb|4ARP|A Chain A, Structure Of The Inactive Pesticin E178a Mutant
pdb|4ARP|B Chain B, Structure Of The Inactive Pesticin E178a Mutant
Length = 357
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 RGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKI 72
RG+ +Y K T+ L D FS G FN A++G + +
Sbjct: 236 RGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTAL 295
Query: 73 IETIHKLYHQVNKKLPEF--QVFLNDLPG--NDFNSIFESLPDFYKR 115
+ ++ ++++ P +V D G N FN+I + + D KR
Sbjct: 296 VSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKR 342
>pdb|4ARM|B Chain B, Structure Of The Inactive Pesticin T201a Mutant
Length = 359
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 RGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKI 72
RG+ +Y K T+ L D FS G FN A++G + +
Sbjct: 236 RGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTAL 295
Query: 73 IETIHKLYHQVNKKLPEF--QVFLNDLPG--NDFNSIFESLPDFYKR 115
+ ++ ++++ P +V D G N FN+I + + D KR
Sbjct: 296 VSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKR 342
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 48 FPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFE 107
F GC V D+GC G FL + K E I + +N+ + +F ++ +D +
Sbjct: 39 FKGCRRVLDIGCGRG--EFLELCK-EEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLK 95
Query: 108 SLPDFY 113
SLPD Y
Sbjct: 96 SLPDKY 101
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 298
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 142 SINFIHSSYSVHWLSKVPENLETNKRNIYIT---KSSPPSVCQAFLEQFQRDFSAFLSLR 198
+ F H+ H ++++P+ L NK + T + S+ + +F + F+ L
Sbjct: 185 ELGFKHNEIQ-HMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-- 241
Query: 199 SEEIVSGGRMFLTFIGRSIADPSSKDCCRLWELLT 233
V +FLT++GR+ DP+ + L +L++
Sbjct: 242 ---KVKERHLFLTYLGRAQYDPAKPNYISLDKLVS 273
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 270
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 142 SINFIHSSYSVHWLSKVPENLETNKRNIYIT---KSSPPSVCQAFLEQFQRDFSAFLSLR 198
+ F H+ H ++++P+ L NK + T + S+ + +F + F+ L
Sbjct: 157 ELGFKHNEIQ-HMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-- 213
Query: 199 SEEIVSGGRMFLTFIGRSIADPSSKDCCRLWELLT 233
V +FLT++GR+ DP+ + L +L++
Sbjct: 214 ---KVKERHLFLTYLGRAQYDPAKPNYISLDKLVS 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,078,367
Number of Sequences: 62578
Number of extensions: 283239
Number of successful extensions: 754
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 23
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)