Query 036835
Match_columns 242
No_of_seqs 133 out of 467
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 3.9E-76 8.6E-81 547.7 25.8 241 1-242 13-269 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 2.5E-67 5.5E-72 483.3 17.9 205 36-242 1-213 (334)
3 PRK10258 biotin biosynthesis p 99.2 6.8E-11 1.5E-15 103.9 9.7 128 16-217 18-145 (251)
4 TIGR02072 BioC biotin biosynth 99.2 8E-11 1.7E-15 100.9 9.3 135 15-217 6-140 (240)
5 PRK01683 trans-aconitate 2-met 99.0 1.1E-09 2.3E-14 96.5 9.0 126 15-214 6-132 (258)
6 PRK14103 trans-aconitate 2-met 99.0 8.4E-10 1.8E-14 97.4 7.5 125 15-214 4-128 (255)
7 PF08241 Methyltransf_11: Meth 98.7 1.5E-08 3.3E-13 74.2 4.7 95 55-210 1-95 (95)
8 PF13489 Methyltransf_23: Meth 98.6 4E-08 8.7E-13 79.1 5.3 97 49-216 21-119 (161)
9 PLN02233 ubiquinone biosynthes 98.6 3.4E-07 7.4E-12 81.6 10.7 116 50-218 73-188 (261)
10 TIGR00740 methyltransferase, p 98.6 5.5E-07 1.2E-11 78.7 11.1 114 50-217 53-166 (239)
11 PTZ00098 phosphoethanolamine N 98.5 6.9E-07 1.5E-11 79.8 10.9 111 49-217 51-161 (263)
12 TIGR02752 MenG_heptapren 2-hep 98.5 3.6E-07 7.8E-12 78.9 8.2 112 50-217 45-156 (231)
13 PF12847 Methyltransf_18: Meth 98.5 1.3E-06 2.9E-11 66.5 9.8 108 51-212 2-111 (112)
14 COG2226 UbiE Methylase involve 98.5 6.3E-07 1.4E-11 79.4 8.8 114 50-220 51-164 (238)
15 PF08242 Methyltransf_12: Meth 98.5 8.9E-08 1.9E-12 72.1 2.8 98 55-208 1-99 (99)
16 PLN02244 tocopherol O-methyltr 98.5 1.4E-06 3.1E-11 80.5 10.9 110 50-217 118-228 (340)
17 PRK11207 tellurite resistance 98.4 1.5E-06 3.2E-11 74.3 9.2 107 51-215 31-138 (197)
18 PRK11036 putative S-adenosyl-L 98.4 7.1E-07 1.5E-11 78.9 7.4 108 49-215 43-152 (255)
19 TIGR00477 tehB tellurite resis 98.4 1.3E-06 2.9E-11 74.4 8.8 103 51-212 31-133 (195)
20 PLN02336 phosphoethanolamine N 98.4 1.1E-06 2.3E-11 84.3 8.8 110 50-218 266-375 (475)
21 PRK15451 tRNA cmo(5)U34 methyl 98.4 3.9E-06 8.5E-11 74.0 11.5 113 49-215 55-167 (247)
22 PLN02396 hexaprenyldihydroxybe 98.3 1.9E-06 4.2E-11 79.4 8.9 108 51-216 132-239 (322)
23 COG4106 Tam Trans-aconitate me 98.3 8.1E-07 1.7E-11 77.6 5.7 103 50-215 30-132 (257)
24 PRK00121 trmB tRNA (guanine-N( 98.3 7E-07 1.5E-11 76.6 5.2 141 24-213 14-157 (202)
25 PRK00216 ubiE ubiquinone/menaq 98.3 2.7E-06 5.8E-11 73.0 8.3 111 51-217 52-163 (239)
26 PF13847 Methyltransf_31: Meth 98.3 4.3E-06 9.3E-11 67.9 8.7 107 50-214 3-112 (152)
27 PF01209 Ubie_methyltran: ubiE 98.3 7.5E-07 1.6E-11 78.5 4.4 113 50-218 47-159 (233)
28 PRK12335 tellurite resistance 98.3 2.3E-06 5.1E-11 77.1 7.2 104 51-213 121-224 (287)
29 TIGR03438 probable methyltrans 98.3 8E-06 1.7E-10 74.3 10.7 131 34-218 48-183 (301)
30 smart00138 MeTrc Methyltransfe 98.2 1.2E-05 2.5E-10 72.1 11.4 46 135-211 196-241 (264)
31 PRK08317 hypothetical protein; 98.2 6.2E-06 1.3E-10 70.3 9.2 108 50-214 19-126 (241)
32 PRK06922 hypothetical protein; 98.2 2.8E-06 6E-11 84.6 7.9 116 51-212 419-537 (677)
33 PRK11088 rrmA 23S rRNA methylt 98.2 1.2E-05 2.5E-10 71.9 11.2 74 50-150 85-159 (272)
34 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 4.9E-06 1.1E-10 70.6 8.4 108 50-215 39-146 (223)
35 PRK15068 tRNA mo(5)U34 methylt 98.2 1.8E-06 3.9E-11 79.5 6.1 109 51-217 123-231 (322)
36 TIGR02716 C20_methyl_CrtF C-20 98.2 1.7E-05 3.8E-10 71.8 10.9 112 49-217 148-259 (306)
37 PRK11188 rrmJ 23S rRNA methylt 98.1 3.1E-05 6.6E-10 67.0 11.2 112 50-217 51-170 (209)
38 PRK11873 arsM arsenite S-adeno 98.1 1.3E-05 2.8E-10 71.3 9.0 110 50-215 77-186 (272)
39 smart00828 PKS_MT Methyltransf 98.1 5.8E-06 1.2E-10 71.1 6.6 106 53-215 2-107 (224)
40 KOG1541 Predicted protein carb 98.1 1.1E-05 2.3E-10 70.9 8.1 139 16-216 21-164 (270)
41 TIGR03587 Pse_Me-ase pseudamin 98.1 4E-05 8.7E-10 66.1 11.6 105 14-155 14-118 (204)
42 KOG2940 Predicted methyltransf 98.1 3.4E-06 7.4E-11 74.5 4.8 106 50-217 72-179 (325)
43 PF13649 Methyltransf_25: Meth 98.1 5.5E-06 1.2E-10 62.7 5.4 100 54-206 1-101 (101)
44 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.4E-05 3E-10 74.4 9.0 104 50-213 113-216 (340)
45 PF03848 TehB: Tellurite resis 98.1 4.9E-06 1.1E-10 71.5 5.3 120 30-214 16-135 (192)
46 TIGR00452 methyltransferase, p 98.1 5.4E-06 1.2E-10 76.2 5.6 107 51-215 122-228 (314)
47 PRK06202 hypothetical protein; 98.0 0.0002 4.3E-09 62.2 14.2 86 49-157 59-144 (232)
48 PLN02336 phosphoethanolamine N 98.0 1.7E-05 3.7E-10 76.0 7.9 103 51-213 38-143 (475)
49 TIGR02469 CbiT precorrin-6Y C5 98.0 2.5E-05 5.4E-10 60.1 7.4 21 193-213 103-123 (124)
50 PRK05785 hypothetical protein; 98.0 3.5E-05 7.6E-10 67.4 9.1 77 51-160 52-128 (226)
51 PF05175 MTS: Methyltransferas 98.0 9.8E-05 2.1E-09 61.5 10.8 110 50-212 31-140 (170)
52 PRK09489 rsmC 16S ribosomal RN 97.9 3.6E-05 7.7E-10 71.6 7.6 107 51-212 197-303 (342)
53 PRK15001 SAM-dependent 23S rib 97.9 6.8E-05 1.5E-09 70.7 9.5 110 52-212 230-340 (378)
54 PF05401 NodS: Nodulation prot 97.9 9.2E-05 2E-09 63.9 9.2 94 49-213 42-147 (201)
55 TIGR00091 tRNA (guanine-N(7)-) 97.9 3.1E-05 6.6E-10 65.9 6.2 115 50-213 16-133 (194)
56 TIGR00537 hemK_rel_arch HemK-r 97.8 0.00011 2.5E-09 61.2 8.6 125 51-216 20-144 (179)
57 PRK11705 cyclopropane fatty ac 97.8 0.0002 4.3E-09 67.5 11.0 106 50-217 167-272 (383)
58 PF00891 Methyltransf_2: O-met 97.8 0.00019 4E-09 62.7 9.9 105 49-219 99-206 (241)
59 TIGR00138 gidB 16S rRNA methyl 97.7 0.00011 2.3E-09 62.3 7.4 75 51-150 43-117 (181)
60 PRK08287 cobalt-precorrin-6Y C 97.7 0.00012 2.7E-09 61.5 7.8 34 50-98 31-64 (187)
61 PRK00107 gidB 16S rRNA methylt 97.7 0.00015 3.2E-09 62.0 7.7 102 49-212 44-145 (187)
62 KOG3010 Methyltransferase [Gen 97.7 0.00018 4E-09 63.8 8.5 48 137-218 95-142 (261)
63 TIGR01983 UbiG ubiquinone bios 97.7 0.00016 3.6E-09 61.8 7.8 107 50-215 45-152 (224)
64 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00013 2.9E-09 68.9 7.5 111 51-212 123-235 (390)
65 TIGR03534 RF_mod_PrmC protein- 97.6 0.00036 7.8E-09 60.6 9.4 128 50-212 87-217 (251)
66 COG2230 Cfa Cyclopropane fatty 97.6 0.00079 1.7E-08 61.2 11.2 35 183-217 147-181 (283)
67 cd02440 AdoMet_MTases S-adenos 97.6 0.00033 7.3E-09 50.2 7.2 102 53-211 1-103 (107)
68 TIGR03533 L3_gln_methyl protei 97.6 0.00073 1.6E-08 61.1 10.7 123 51-212 122-251 (284)
69 PF05891 Methyltransf_PK: AdoM 97.6 4E-05 8.6E-10 67.0 2.3 105 49-212 54-161 (218)
70 KOG2361 Predicted methyltransf 97.5 0.00091 2E-08 59.5 10.5 152 17-218 30-189 (264)
71 PRK05134 bifunctional 3-demeth 97.5 0.00038 8.2E-09 60.2 7.6 44 139-215 111-154 (233)
72 PRK13944 protein-L-isoaspartat 97.4 0.0015 3.3E-08 56.0 10.6 82 51-154 73-154 (205)
73 KOG1270 Methyltransferases [Co 97.4 0.00021 4.5E-09 64.2 5.0 29 189-217 172-200 (282)
74 COG4123 Predicted O-methyltran 97.4 0.00076 1.7E-08 60.2 8.3 127 49-213 43-171 (248)
75 COG2813 RsmC 16S RNA G1207 met 97.4 0.00045 9.8E-09 63.1 6.9 109 51-213 159-267 (300)
76 COG2227 UbiG 2-polyprenyl-3-me 97.4 0.00027 5.9E-09 62.6 5.3 107 51-217 60-166 (243)
77 PRK00312 pcm protein-L-isoaspa 97.4 0.0022 4.7E-08 55.0 10.7 20 50-69 78-97 (212)
78 TIGR00080 pimt protein-L-isoas 97.4 0.0012 2.6E-08 56.8 9.1 79 50-151 77-155 (215)
79 PRK07580 Mg-protoporphyrin IX 97.3 0.0044 9.4E-08 53.1 12.2 20 50-69 63-82 (230)
80 KOG3178 Hydroxyindole-O-methyl 97.3 0.0028 6.1E-08 58.9 11.5 146 6-217 134-280 (342)
81 PRK13942 protein-L-isoaspartat 97.3 0.002 4.2E-08 55.7 9.8 80 50-152 76-155 (212)
82 TIGR02021 BchM-ChlM magnesium 97.3 0.0063 1.4E-07 52.3 12.9 51 18-69 24-74 (219)
83 TIGR03840 TMPT_Se_Te thiopurin 97.2 0.0029 6.3E-08 55.0 10.1 119 50-216 34-156 (213)
84 PRK11805 N5-glutamine S-adenos 97.2 0.003 6.5E-08 57.9 10.5 74 52-149 135-208 (307)
85 PF02353 CMAS: Mycolic acid cy 97.2 0.0016 3.5E-08 58.7 8.6 29 189-217 143-171 (273)
86 PRK04266 fibrillarin; Provisio 97.2 0.0023 4.9E-08 56.2 9.3 20 50-69 72-91 (226)
87 TIGR00438 rrmJ cell division p 97.2 0.0019 4.1E-08 54.4 8.5 24 190-213 124-147 (188)
88 PF03141 Methyltransf_29: Puta 97.2 0.00059 1.3E-08 66.0 6.0 104 49-216 116-223 (506)
89 PRK14966 unknown domain/N5-glu 97.2 0.002 4.4E-08 61.6 9.3 123 51-210 252-379 (423)
90 PF06080 DUF938: Protein of un 97.2 0.004 8.6E-08 54.1 10.3 135 30-217 8-146 (204)
91 PLN03075 nicotianamine synthas 97.2 0.0038 8.3E-08 57.1 10.5 110 50-212 123-233 (296)
92 PF05148 Methyltransf_8: Hypot 97.1 0.00099 2.1E-08 58.1 6.0 92 48-216 70-162 (219)
93 PRK01544 bifunctional N5-gluta 97.1 0.0035 7.7E-08 61.2 10.5 129 51-211 139-268 (506)
94 TIGR00536 hemK_fam HemK family 97.1 0.0048 1.1E-07 55.5 10.6 127 52-212 116-244 (284)
95 TIGR02081 metW methionine bios 97.1 0.0009 1.9E-08 56.6 5.5 20 138-157 71-90 (194)
96 PRK10901 16S rRNA methyltransf 97.1 0.0028 6.1E-08 60.4 9.4 126 51-215 245-375 (427)
97 PRK13255 thiopurine S-methyltr 97.1 0.009 2E-07 52.1 11.6 35 32-69 22-56 (218)
98 PRK09328 N5-glutamine S-adenos 97.1 0.0021 4.5E-08 56.8 7.6 24 189-212 215-238 (275)
99 TIGR00563 rsmB ribosomal RNA s 97.1 0.0051 1.1E-07 58.6 10.7 130 51-217 239-373 (426)
100 PHA03411 putative methyltransf 97.0 0.0036 7.7E-08 56.8 8.8 118 51-217 65-188 (279)
101 PTZ00146 fibrillarin; Provisio 97.0 0.011 2.4E-07 54.0 11.9 20 51-70 133-152 (293)
102 TIGR00406 prmA ribosomal prote 97.0 0.0022 4.9E-08 57.9 7.3 23 194-216 241-263 (288)
103 KOG1540 Ubiquinone biosynthesi 96.9 0.0046 1E-07 55.6 7.8 121 50-218 100-220 (296)
104 PRK14903 16S rRNA methyltransf 96.8 0.0069 1.5E-07 58.0 9.1 131 51-218 238-372 (431)
105 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0044 9.6E-08 57.5 7.3 45 141-214 144-188 (331)
106 PF13659 Methyltransf_26: Meth 96.8 0.0031 6.8E-08 48.2 5.3 112 52-213 2-116 (117)
107 PRK14904 16S rRNA methyltransf 96.7 0.0088 1.9E-07 57.3 9.5 128 51-217 251-382 (445)
108 COG2242 CobL Precorrin-6B meth 96.7 0.019 4.1E-07 49.2 10.2 37 167-217 104-140 (187)
109 KOG3045 Predicted RNA methylas 96.7 0.0033 7.2E-08 56.7 5.7 53 129-215 215-267 (325)
110 PRK14967 putative methyltransf 96.7 0.0065 1.4E-07 52.6 7.4 125 51-215 37-162 (223)
111 KOG2904 Predicted methyltransf 96.7 0.016 3.5E-07 52.6 9.9 28 191-218 264-291 (328)
112 PRK14901 16S rRNA methyltransf 96.6 0.012 2.7E-07 56.2 9.7 127 51-215 253-387 (434)
113 PF08003 Methyltransf_9: Prote 96.6 0.0099 2.2E-07 54.6 8.4 110 51-218 116-225 (315)
114 PRK14968 putative methyltransf 96.6 0.015 3.3E-07 47.9 8.9 24 190-213 126-149 (188)
115 KOG4300 Predicted methyltransf 96.6 0.014 2.9E-07 51.2 8.5 111 50-218 76-188 (252)
116 PRK00377 cbiT cobalt-precorrin 96.6 0.0079 1.7E-07 51.1 7.1 20 50-69 40-59 (198)
117 PRK14902 16S rRNA methyltransf 96.5 0.027 5.9E-07 53.9 11.2 127 51-215 251-382 (444)
118 PLN02232 ubiquinone biosynthes 96.5 0.0032 6.9E-08 52.0 3.8 54 131-217 33-86 (160)
119 PRK01544 bifunctional N5-gluta 96.4 0.0064 1.4E-07 59.4 6.2 138 24-211 324-461 (506)
120 TIGR03704 PrmC_rel_meth putati 96.4 0.037 8.1E-07 49.1 10.5 22 191-212 195-216 (251)
121 TIGR03439 methyl_EasF probable 96.4 0.034 7.4E-07 51.4 10.5 142 34-218 61-203 (319)
122 COG2890 HemK Methylase of poly 96.4 0.03 6.5E-07 50.7 9.9 121 53-211 113-237 (280)
123 KOG1500 Protein arginine N-met 96.3 0.016 3.5E-07 54.2 8.0 117 50-224 177-293 (517)
124 TIGR01177 conserved hypothetic 96.3 0.058 1.2E-06 49.6 11.4 25 192-216 274-298 (329)
125 PRK00517 prmA ribosomal protei 96.3 0.019 4.1E-07 50.7 7.8 22 194-215 195-216 (250)
126 PF10294 Methyltransf_16: Puta 96.2 0.021 4.7E-07 47.8 7.5 112 50-215 45-159 (173)
127 PF02390 Methyltransf_4: Putat 96.2 0.0081 1.7E-07 51.5 5.0 113 52-211 19-132 (195)
128 COG2264 PrmA Ribosomal protein 96.1 0.047 1E-06 50.1 9.8 31 31-69 151-181 (300)
129 PLN02585 magnesium protoporphy 96.1 0.084 1.8E-06 48.7 11.4 19 51-69 145-163 (315)
130 PRK00811 spermidine synthase; 96.0 0.017 3.7E-07 52.2 6.4 114 49-211 75-190 (283)
131 PF05185 PRMT5: PRMT5 arginine 96.0 0.01 2.2E-07 57.3 5.2 108 51-209 187-294 (448)
132 TIGR00446 nop2p NOL1/NOP2/sun 96.0 0.037 8E-07 49.4 8.3 30 188-217 175-204 (264)
133 KOG1499 Protein arginine N-met 95.8 0.011 2.4E-07 55.0 4.2 104 50-209 60-164 (346)
134 PRK07402 precorrin-6B methylas 95.6 0.053 1.1E-06 45.8 7.6 24 191-214 121-144 (196)
135 TIGR00417 speE spermidine synt 95.4 0.029 6.4E-07 50.2 5.5 19 193-211 167-185 (270)
136 PRK13943 protein-L-isoaspartat 95.3 0.13 2.9E-06 47.5 9.7 20 50-69 80-99 (322)
137 PRK04457 spermidine synthase; 95.2 0.056 1.2E-06 48.3 6.6 23 194-216 159-181 (262)
138 KOG1331 Predicted methyltransf 95.2 0.048 1E-06 49.6 6.1 135 17-220 17-151 (293)
139 KOG3191 Predicted N6-DNA-methy 95.0 0.32 7E-06 41.9 10.2 145 32-218 28-174 (209)
140 PHA03412 putative methyltransf 94.9 0.05 1.1E-06 48.4 5.3 20 51-70 50-69 (241)
141 PRK01581 speE spermidine synth 94.8 0.075 1.6E-06 50.2 6.4 18 194-211 250-267 (374)
142 PLN02672 methionine S-methyltr 94.6 0.084 1.8E-06 56.0 6.9 32 52-98 120-151 (1082)
143 COG1352 CheR Methylase of chem 94.6 0.56 1.2E-05 42.4 11.3 127 50-219 96-245 (268)
144 PLN02366 spermidine synthase 94.2 0.13 2.8E-06 47.3 6.6 20 49-68 90-109 (308)
145 KOG1975 mRNA cap methyltransfe 93.8 0.21 4.4E-06 46.6 7.0 119 50-215 117-240 (389)
146 PF01739 CheR: CheR methyltran 93.6 0.2 4.3E-06 43.1 6.3 44 137-211 131-174 (196)
147 COG2518 Pcm Protein-L-isoaspar 93.6 0.28 6.2E-06 42.8 7.1 20 50-69 72-91 (209)
148 PF07021 MetW: Methionine bios 93.3 0.063 1.4E-06 46.3 2.6 29 129-157 60-90 (193)
149 PF01728 FtsJ: FtsJ-like methy 93.3 0.49 1.1E-05 39.3 8.0 37 50-100 23-59 (181)
150 PRK11783 rlmL 23S rRNA m(2)G24 93.3 0.61 1.3E-05 47.5 10.1 27 187-213 631-657 (702)
151 KOG2899 Predicted methyltransf 93.3 0.61 1.3E-05 42.0 8.8 45 139-210 163-207 (288)
152 COG0220 Predicted S-adenosylme 93.1 0.21 4.6E-06 44.0 5.8 113 52-211 50-163 (227)
153 PRK15128 23S rRNA m(5)C1962 me 93.1 0.63 1.4E-05 44.2 9.3 27 186-212 313-339 (396)
154 PLN02781 Probable caffeoyl-CoA 93.0 0.19 4.2E-06 44.1 5.4 35 50-98 68-102 (234)
155 PF01135 PCMT: Protein-L-isoas 93.0 0.3 6.5E-06 42.4 6.4 20 50-69 72-91 (209)
156 PRK00274 ksgA 16S ribosomal RN 92.9 0.042 9E-07 49.3 1.0 126 5-145 7-156 (272)
157 smart00650 rADc Ribosomal RNA 92.7 0.13 2.9E-06 42.3 3.8 21 50-70 13-33 (169)
158 PRK11933 yebU rRNA (cytosine-C 92.6 0.45 9.8E-06 46.3 7.7 129 51-216 114-246 (470)
159 PRK03612 spermidine synthase; 92.6 0.34 7.4E-06 47.6 6.9 21 49-69 296-316 (521)
160 PRK10611 chemotaxis methyltran 92.1 0.44 9.5E-06 43.5 6.5 41 140-211 221-261 (287)
161 PRK13256 thiopurine S-methyltr 92.1 0.68 1.5E-05 40.8 7.5 132 32-215 28-166 (226)
162 COG4976 Predicted methyltransf 91.8 0.16 3.6E-06 45.3 3.3 30 190-219 203-232 (287)
163 PF05219 DREV: DREV methyltran 90.2 1 2.2E-05 40.7 6.8 20 50-69 94-113 (265)
164 PF13679 Methyltransf_32: Meth 89.8 0.57 1.2E-05 37.6 4.6 40 29-70 6-45 (141)
165 PF11968 DUF3321: Putative met 89.4 1.8 4E-05 38.0 7.6 136 7-217 6-154 (219)
166 PF06325 PrmA: Ribosomal prote 88.5 0.43 9.4E-06 43.7 3.3 32 30-69 149-180 (295)
167 KOG1271 Methyltransferases [Ge 87.9 6.9 0.00015 34.0 9.9 17 51-67 68-84 (227)
168 TIGR00478 tly hemolysin TlyA f 87.2 0.79 1.7E-05 40.4 4.0 20 50-69 75-94 (228)
169 PRK03522 rumB 23S rRNA methylu 86.7 0.82 1.8E-05 41.8 4.0 19 51-69 174-192 (315)
170 PRK04148 hypothetical protein; 86.5 2.3 5E-05 34.6 6.0 19 50-68 16-35 (134)
171 COG2263 Predicted RNA methylas 86.1 0.45 9.7E-06 41.1 1.8 18 51-68 46-63 (198)
172 COG2519 GCD14 tRNA(1-methylade 86.0 3.9 8.4E-05 36.8 7.7 103 51-215 95-198 (256)
173 TIGR00755 ksgA dimethyladenosi 84.7 1.2 2.6E-05 39.2 3.9 22 50-71 29-50 (253)
174 PTZ00338 dimethyladenosine tra 84.6 1.3 2.8E-05 40.4 4.2 52 50-102 36-99 (294)
175 PF06859 Bin3: Bicoid-interact 84.0 1 2.2E-05 35.5 2.7 42 143-211 2-43 (110)
176 PRK10909 rsmD 16S rRNA m(2)G96 82.8 1.4 2.9E-05 38.0 3.4 19 51-69 54-72 (199)
177 PRK14896 ksgA 16S ribosomal RN 82.3 0.73 1.6E-05 40.9 1.6 48 50-101 29-88 (258)
178 COG0144 Sun tRNA and rRNA cyto 81.6 15 0.00033 34.3 10.2 133 51-218 157-294 (355)
179 PF07942 N2227: N2227-like pro 80.2 11 0.00023 34.2 8.4 38 32-69 36-75 (270)
180 PLN02589 caffeoyl-CoA O-methyl 80.1 4.3 9.4E-05 36.2 5.7 22 50-71 79-100 (247)
181 PF12147 Methyltransf_20: Puta 80.1 5.4 0.00012 36.8 6.4 53 31-98 118-170 (311)
182 PF08704 GCD14: tRNA methyltra 79.5 12 0.00025 33.5 8.2 22 51-72 41-62 (247)
183 PF02384 N6_Mtase: N-6 DNA Met 77.2 8.4 0.00018 34.6 6.8 135 50-214 46-185 (311)
184 PRK13168 rumA 23S rRNA m(5)U19 76.9 3.9 8.5E-05 39.1 4.8 19 51-69 298-316 (443)
185 PF05724 TPMT: Thiopurine S-me 76.8 5.6 0.00012 34.6 5.3 129 32-213 22-156 (218)
186 PRK00536 speE spermidine synth 76.7 24 0.00052 31.8 9.5 100 48-211 70-170 (262)
187 PF09243 Rsm22: Mitochondrial 76.7 24 0.00052 31.7 9.6 17 50-66 33-49 (274)
188 PF07757 AdoMet_MTase: Predict 76.3 3 6.5E-05 32.9 3.1 20 50-69 58-77 (112)
189 PF03514 GRAS: GRAS domain fam 76.1 35 0.00075 32.2 10.8 44 50-101 110-153 (374)
190 PF08123 DOT1: Histone methyla 75.0 7.4 0.00016 33.7 5.6 23 189-212 135-157 (205)
191 PF01269 Fibrillarin: Fibrilla 74.8 11 0.00025 33.3 6.7 24 50-74 73-96 (229)
192 COG0030 KsgA Dimethyladenosine 73.7 7.9 0.00017 34.9 5.6 102 51-156 31-157 (259)
193 PRK04338 N(2),N(2)-dimethylgua 72.7 4.9 0.00011 38.0 4.2 63 12-98 28-90 (382)
194 TIGR02085 meth_trns_rumB 23S r 72.3 5.1 0.00011 37.6 4.2 18 52-69 235-252 (374)
195 TIGR00095 RNA methyltransferas 71.4 4.9 0.00011 34.1 3.6 19 51-69 50-68 (189)
196 COG4122 Predicted O-methyltran 71.3 13 0.00028 32.7 6.3 23 50-72 59-81 (219)
197 TIGR00479 rumA 23S rRNA (uraci 69.4 7.3 0.00016 37.0 4.6 19 51-69 293-311 (431)
198 PLN02823 spermine synthase 69.2 15 0.00033 34.2 6.6 21 49-69 102-122 (336)
199 COG1189 Predicted rRNA methyla 69.2 5.8 0.00013 35.4 3.6 22 48-69 77-98 (245)
200 PRK05031 tRNA (uracil-5-)-meth 66.4 9.2 0.0002 35.7 4.6 19 52-70 208-226 (362)
201 KOG1269 SAM-dependent methyltr 66.2 12 0.00026 35.4 5.3 109 52-217 112-220 (364)
202 TIGR02143 trmA_only tRNA (urac 64.8 9.8 0.00021 35.5 4.4 19 52-70 199-217 (353)
203 COG1565 Uncharacterized conser 64.4 56 0.0012 31.0 9.3 24 49-72 76-99 (370)
204 COG2521 Predicted archaeal met 62.3 14 0.00029 33.4 4.5 62 128-219 189-254 (287)
205 KOG3420 Predicted RNA methylas 61.8 5.8 0.00013 33.3 2.0 17 50-66 48-64 (185)
206 KOG2798 Putative trehalase [Ca 61.6 48 0.001 31.2 8.1 36 33-69 132-169 (369)
207 COG4627 Uncharacterized protei 61.4 8.7 0.00019 32.5 3.0 54 131-215 36-89 (185)
208 PRK11760 putative 23S rRNA C24 61.2 9.8 0.00021 35.9 3.7 20 50-69 211-230 (357)
209 KOG4589 Cell division protein 59.8 13 0.00028 32.5 3.9 20 50-69 69-88 (232)
210 PRK11727 23S rRNA mA1618 methy 58.0 7.4 0.00016 36.1 2.3 19 50-68 114-132 (321)
211 TIGR01444 fkbM_fam methyltrans 58.0 6.1 0.00013 30.9 1.5 17 53-69 1-17 (143)
212 PF01234 NNMT_PNMT_TEMT: NNMT/ 57.4 11 0.00024 33.9 3.2 48 141-217 157-204 (256)
213 KOG3115 Methyltransferase-like 57.2 6 0.00013 34.9 1.4 18 51-68 61-78 (249)
214 KOG1122 tRNA and rRNA cytosine 51.4 1.3E+02 0.0029 29.2 9.5 133 50-217 241-376 (460)
215 TIGR02987 met_A_Alw26 type II 49.2 21 0.00046 34.9 4.0 42 50-98 31-72 (524)
216 PF01189 Nol1_Nop2_Fmu: NOL1/N 48.4 28 0.0006 31.4 4.4 128 51-217 86-224 (283)
217 PF02636 Methyltransf_28: Puta 48.3 24 0.00051 31.0 3.8 23 50-72 18-40 (252)
218 PF09445 Methyltransf_15: RNA 47.6 12 0.00026 31.4 1.7 19 53-71 2-20 (163)
219 KOG1501 Arginine N-methyltrans 44.3 18 0.00039 35.5 2.5 35 36-70 52-86 (636)
220 COG0275 Predicted S-adenosylme 43.5 27 0.00058 32.4 3.4 37 179-215 211-247 (314)
221 PF01596 Methyltransf_3: O-met 43.5 18 0.0004 31.2 2.3 23 50-72 45-67 (205)
222 TIGR00006 S-adenosyl-methyltra 43.1 51 0.0011 30.4 5.2 33 183-215 211-243 (305)
223 PRK00050 16S rRNA m(4)C1402 me 42.9 51 0.0011 30.2 5.2 33 183-215 207-239 (296)
224 COG4076 Predicted RNA methylas 40.7 65 0.0014 28.3 5.2 63 33-102 21-94 (252)
225 KOG0820 Ribosomal RNA adenine 40.4 87 0.0019 28.9 6.2 52 49-101 57-120 (315)
226 TIGR00308 TRM1 tRNA(guanine-26 40.3 32 0.00068 32.6 3.5 52 14-71 14-65 (374)
227 PF07091 FmrO: Ribosomal RNA m 40.3 23 0.00049 31.9 2.4 36 33-69 89-124 (251)
228 PF02475 Met_10: Met-10+ like- 37.7 94 0.002 26.7 5.8 34 50-98 101-134 (200)
229 PF09597 IGR: IGR protein moti 37.0 30 0.00065 24.0 2.1 27 181-207 13-39 (57)
230 PRK00050 16S rRNA m(4)C1402 me 36.4 35 0.00075 31.3 3.0 22 51-72 20-41 (296)
231 PRK11524 putative methyltransf 35.6 64 0.0014 28.9 4.6 21 191-211 59-79 (284)
232 PF00398 RrnaAD: Ribosomal RNA 35.5 61 0.0013 28.6 4.5 86 50-139 30-142 (262)
233 smart00400 ZnF_CHCC zinc finge 31.9 41 0.00089 22.5 2.2 22 51-72 21-42 (55)
234 KOG2920 Predicted methyltransf 31.4 24 0.00052 32.3 1.1 34 31-68 100-134 (282)
235 PF01795 Methyltransf_5: MraW 30.4 55 0.0012 30.3 3.4 33 183-215 212-244 (310)
236 PF10357 Kin17_mid: Domain of 29.8 58 0.0013 26.3 3.0 27 175-201 9-35 (127)
237 PLN02476 O-methyltransferase 29.3 40 0.00086 30.7 2.2 21 50-70 118-138 (278)
238 COG3963 Phospholipid N-methylt 28.8 80 0.0017 27.2 3.7 113 51-219 49-163 (194)
239 COG1942 Uncharacterized protei 27.0 2.1E+02 0.0045 20.5 5.2 43 59-101 8-51 (69)
240 PF09119 SicP-binding: SicP bi 26.8 1.1E+02 0.0023 22.9 3.7 43 146-201 4-50 (81)
241 KOG3790 Uncharacterized conser 26.2 48 0.001 32.4 2.2 22 50-73 211-232 (529)
242 COG0500 SmtA SAM-dependent met 26.1 1E+02 0.0022 21.9 3.5 25 194-218 137-161 (257)
243 COG0293 FtsJ 23S rRNA methylas 25.6 1.3E+02 0.0027 26.3 4.6 48 16-69 14-64 (205)
244 PF04816 DUF633: Family of unk 25.6 40 0.00087 29.1 1.5 42 54-110 1-42 (205)
245 PRK02289 4-oxalocrotonate taut 24.3 1.5E+02 0.0033 19.9 4.0 37 62-99 11-48 (60)
246 PRK13699 putative methylase; P 24.0 88 0.0019 27.3 3.4 19 192-210 52-70 (227)
247 KOG4058 Uncharacterized conser 22.5 80 0.0017 26.7 2.6 62 6-67 23-89 (199)
248 COG1092 Predicted SAM-dependen 21.8 2.6E+02 0.0056 26.8 6.3 31 185-215 309-339 (393)
249 PF02527 GidB: rRNA small subu 21.5 2.2E+02 0.0048 24.0 5.3 31 53-98 51-81 (184)
250 KOG2198 tRNA cytosine-5-methyl 21.3 1.8E+02 0.0039 27.7 5.0 49 50-109 155-203 (375)
251 PHA03297 envelope glycoprotein 21.2 27 0.00059 29.1 -0.4 57 49-105 38-104 (185)
252 TIGR03357 VI_zyme type VI secr 20.4 4.2E+02 0.0092 20.7 8.1 30 30-59 24-53 (133)
253 PF05958 tRNA_U5-meth_tr: tRNA 20.3 1.3E+02 0.0029 27.9 3.9 18 53-70 199-216 (352)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=3.9e-76 Score=547.68 Aligned_cols=241 Identities=41% Similarity=0.717 Sum_probs=220.6
Q ss_pred CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCC-CccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 036835 1 MVVVSVPCMNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFP-GCFNVADLGCSSGPNTFLVISKIIETIHKL 79 (242)
Q Consensus 1 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~ 79 (242)
|+++++|||+||+|++||++||.+|++++..++|+|+++|++++.+..| ++++|||||||+|+||+.+++.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988654435 689999999999999999999999999999
Q ss_pred HhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhh-------hhcCCCCceeeccCCCcccccCCCCceeEEEeccce
Q 036835 80 YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRI-------KKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSV 152 (242)
Q Consensus 80 ~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l-------~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~al 152 (242)
|.+.++.+|++||||||||+||||+||++|+.+++.+ +..+.++||++|||||||+||||++|+||+||++||
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl 172 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL 172 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence 9877777889999999999999999999999876543 112234699999999999999999999999999999
Q ss_pred eecccCCCcccC------CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCCCCCCCch-h
Q 036835 153 HWLSKVPENLET------NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADPSSKD-C 225 (242)
Q Consensus 153 hWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~-~ 225 (242)
||||++|+++.+ |||+||+.+++ +.|.+||++||++||..||++||+||+|||+|+++++||++.++..++ .
T Consensus 173 HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~ 251 (386)
T PLN02668 173 HWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGA 251 (386)
T ss_pred eecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCch
Confidence 999999999874 99999999887 889999999999999999999999999999999999999988887665 6
Q ss_pred hHHHHH-HHHHHHHHHcC
Q 036835 226 CRLWEL-LTKALIQLVNE 242 (242)
Q Consensus 226 ~~~~~~-l~~~l~~mv~e 242 (242)
+.+|++ ++++|+|||.|
T Consensus 252 ~~~~~~~l~~al~dlv~e 269 (386)
T PLN02668 252 GLLFGTHFQDAWDDLVQE 269 (386)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 778887 99999999986
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=2.5e-67 Score=483.28 Aligned_cols=205 Identities=57% Similarity=1.024 Sum_probs=175.9
Q ss_pred HHHHHHhhhcc-CCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhc-CCCCceEEEecCCCCCchHHHhhcCchhH
Q 036835 36 LEETIKDMFSS-SFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVN-KKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 36 l~~ai~~~~~~-~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~-~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
|++||.+++.. ..+++++|||||||+|+||+.+++.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 57899998864 46789999999999999999999999999999998765 67889999999999999999999999987
Q ss_pred hhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccC------CCcceEEcCCCChHHHHHHHHHH
Q 036835 114 KRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLET------NKRNIYITKSSPPSVCQAFLEQF 187 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~Q~ 187 (242)
.++.+ .++||++|||||||+||||++||||+||++||||||++|+++.+ |||+||+.++++++|.+||++||
T Consensus 81 ~~~~~--~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf 158 (334)
T PF03492_consen 81 QSLKK--FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQF 158 (334)
T ss_dssp HHHHH--TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHH
T ss_pred hccCC--CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHH
Confidence 77655 67999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHcC
Q 036835 188 QRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADPSSKDCCRLWELLTKALIQLVNE 242 (242)
Q Consensus 188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~e 242 (242)
++||.+||++||+||+|||+|+++++||++.++...+.+.+|++|+++|+|||.|
T Consensus 159 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~e 213 (334)
T PF03492_consen 159 QKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAE 213 (334)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998777776778999999999999986
No 3
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.21 E-value=6.8e-11 Score=103.87 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=85.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 036835 16 ASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLN 95 (242)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n 95 (242)
.+|.+++.+|+.+...+...+.. ...-+|+|+|||+|.++..+. +. ..+++..
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence 57999999998888777654431 235789999999998776542 11 2577888
Q ss_pred CCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCC
Q 036835 96 DLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSS 175 (242)
Q Consensus 96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s 175 (242)
|+.. ......+.......|+ .+++-.-.+|++++|+++|+.++||..+.+.
T Consensus 71 D~s~-----------~~l~~a~~~~~~~~~~---~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~--------------- 121 (251)
T PRK10258 71 DLSP-----------PMLAQARQKDAADHYL---AGDIESLPLATATFDLAWSNLAVQWCGNLST--------------- 121 (251)
T ss_pred ECCH-----------HHHHHHHhhCCCCCEE---EcCcccCcCCCCcEEEEEECchhhhcCCHHH---------------
Confidence 8752 1111111100011233 3355444568889999999999999655322
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 176 PPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 176 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|+.-.+-|+|||.+++++++.++
T Consensus 122 ------------------~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 122 ------------------ALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred ------------------HHHHHHHHcCCCeEEEEEeCCCCc
Confidence 666667788999999999998754
No 4
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.20 E-value=8e-11 Score=100.90 Aligned_cols=135 Identities=20% Similarity=0.315 Sum_probs=93.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 036835 15 EASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFL 94 (242)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~ 94 (242)
..+|.+.+..|+.+...+.+.+.... ...+.+|+|+|||+|..+..+.+.. +..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEEE
Confidence 46799999999988888877776431 1235789999999999877665221 3466777
Q ss_pred cCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCC
Q 036835 95 NDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKS 174 (242)
Q Consensus 95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~ 174 (242)
.|+.....+..-+.++ .+-.| +-+++.+..+|++++|++++..++||+.+.
T Consensus 64 ~D~~~~~~~~~~~~~~----------~~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~---------------- 114 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS----------ENVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDDL---------------- 114 (240)
T ss_pred EeChHHHHHHHHHhcC----------CCCeE---EecchhhCCCCCCceeEEEEhhhhhhccCH----------------
Confidence 8875322222211111 01122 334666667789999999999999997432
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 175 SPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 175 s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
..+|+...+-|+|||+++++.++...
T Consensus 115 -----------------~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 115 -----------------SQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred -----------------HHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 22788888889999999999876644
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=1.1e-09 Score=96.53 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=81.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 036835 15 EASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFL 94 (242)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~ 94 (242)
...|.+++..|.+....++..+. .....+|+|+|||+|..+..+.+.. |..+|+.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~g 60 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------PAARITG 60 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------CCCEEEE
Confidence 46799988888665554433211 1345799999999999987665221 3467888
Q ss_pred cCCCCCchHHHhhcCchhHhhhhhcCCCC-ceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcC
Q 036835 95 NDLPGNDFNSIFESLPDFYKRIKKDKFGP-CFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITK 173 (242)
Q Consensus 95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~ 173 (242)
.|+.. +.-...+. ..++ -| +.+++ ..+.|++++|+++|+.++||+.+.+
T Consensus 61 vD~s~-~~i~~a~~-----------~~~~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~-------------- 110 (258)
T PRK01683 61 IDSSP-AMLAEARS-----------RLPDCQF---VEADI-ASWQPPQALDLIFANASLQWLPDHL-------------- 110 (258)
T ss_pred EECCH-HHHHHHHH-----------hCCCCeE---EECch-hccCCCCCccEEEEccChhhCCCHH--------------
Confidence 88762 11111110 0112 22 23355 3456778999999999999975321
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecc
Q 036835 174 SSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIG 214 (242)
Q Consensus 174 ~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
.+|+.-.+-|+|||++++.+.+
T Consensus 111 -------------------~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 111 -------------------ELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred -------------------HHHHHHHHhcCCCcEEEEECCC
Confidence 2677777889999999997643
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.00 E-value=8.4e-10 Score=97.44 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=81.6
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 036835 15 EASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFL 94 (242)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~ 94 (242)
...|.+++..|.+....++..+. .....+|+|+|||+|..+..+.+.. |..+|+-
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~~~---------------p~~~v~g 58 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLARRW---------------PGAVIEA 58 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEE
Confidence 45799999999876655433322 1245899999999998876554211 3457777
Q ss_pred cCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCC
Q 036835 95 NDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKS 174 (242)
Q Consensus 95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~ 174 (242)
-|+.. +.....+. . +-.| +.+++ +.+.|.+++|+++|..++||+.+.+.
T Consensus 59 vD~s~-~~~~~a~~----------~--~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~-------------- 107 (255)
T PRK14103 59 LDSSP-EMVAAARE----------R--GVDA---RTGDV-RDWKPKPDTDVVVSNAALQWVPEHAD-------------- 107 (255)
T ss_pred EECCH-HHHHHHHh----------c--CCcE---EEcCh-hhCCCCCCceEEEEehhhhhCCCHHH--------------
Confidence 77741 22111111 0 1112 33465 45667889999999999999754221
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecc
Q 036835 175 SPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIG 214 (242)
Q Consensus 175 s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
+|+.-.+-|+|||++++...+
T Consensus 108 -------------------~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 108 -------------------LLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -------------------HHHHHHHhCCCCcEEEEEcCC
Confidence 566667788999999998765
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.72 E-value=1.5e-08 Score=74.19 Aligned_cols=95 Identities=23% Similarity=0.273 Sum_probs=59.3
Q ss_pred eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcc
Q 036835 55 ADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFY 134 (242)
Q Consensus 55 aDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy 134 (242)
+|+|||+|.++..+.+. +..+++-.|... -. +...++.... ..+- -+-+++.
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-----~~--~~~~~~~~~~---~~~~--~~~~d~~ 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-----EM--LEQARKRLKN---EGVS--FRQGDAE 52 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-----HH--HHHHHHHTTT---STEE--EEESBTT
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-----HH--HHHHHhcccc---cCch--heeehHH
Confidence 69999999998877622 136677666652 10 0111111111 1111 3444787
Q ss_pred cccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 135 ERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 135 ~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.--||++|+|++++..++||+. |...+++.-.+=|+|||++++
T Consensus 53 ~l~~~~~sfD~v~~~~~~~~~~---------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 53 DLPFPDNSFDVVFSNSVLHHLE---------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSSS-TT-EEEEEEESHGGGSS---------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred hCccccccccccccccceeecc---------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 7788999999999999999971 223378888888899999986
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.64 E-value=4e-08 Score=79.07 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|.++..+. +. + .+++..|.-. ..... . ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~-----------~~~~~-~---------~~ 62 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISP-----------QMIEK-R---------NV 62 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSH-----------HHHHH-T---------TS
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCH-----------HHHhh-h---------hh
Confidence 457899999999998755442 11 2 3777777752 11100 0 01
Q ss_pred cCCCcc--cccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 129 MPGSFY--ERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vp~SFy--~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+..|. ...+|++++|+|+++.++||+.+.+ .+|+.-.+-|+|||
T Consensus 63 ~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~---------------------------------~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 63 VFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE---------------------------------EFLKELSRLLKPGG 109 (161)
T ss_dssp EEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH---------------------------------HHHHHHHHCEEEEE
T ss_pred hhhhhhhhhhhccccchhhHhhHHHHhhcccHH---------------------------------HHHHHHHHhcCCCC
Confidence 222332 4456889999999999999977522 28888889999999
Q ss_pred eEEEEecccC
Q 036835 207 RMFLTFIGRS 216 (242)
Q Consensus 207 ~lvl~~~g~~ 216 (242)
+++++.+.+.
T Consensus 110 ~l~~~~~~~~ 119 (161)
T PF13489_consen 110 YLVISDPNRD 119 (161)
T ss_dssp EEEEEEEBTT
T ss_pred EEEEEEcCCc
Confidence 9999999874
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.60 E-value=3.4e-07 Score=81.64 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=69.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+...+ .+.-+|+--|+.. +.-...+..... .......++ .-+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~r~~~---~~~~~~~~i--~~~ 132 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAASRQEL---KAKSCYKNI--EWI 132 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHhhh---hhhccCCCe--EEE
Confidence 45799999999999776554221 1234666667652 111111110000 000001121 123
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-++..+--+|++|+|++++++++||+.+.. .+|+.-.+-|+|||+++
T Consensus 133 ~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRL---------------------------------KAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EcccccCCCCCCCEeEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCcEEE
Confidence 345544457889999999999999965422 26777777889999999
Q ss_pred EEecccCCC
Q 036835 210 LTFIGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+..+.+.+.
T Consensus 180 i~d~~~~~~ 188 (261)
T PLN02233 180 ILDFNKSTQ 188 (261)
T ss_pred EEECCCCCc
Confidence 999987653
No 10
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.58 E-value=5.5e-07 Score=78.66 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=70.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+.+ ..|..+++--|+-. ++-...+. .+.... ...-+..+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~~------~~~~~~-~~~~v~~~ 111 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQ------HIAAYH-SEIPVEIL 111 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHH------HHHhcC-CCCCeEEE
Confidence 45689999999999887776332 12457888888742 22222221 111100 01112234
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+-.++ +.|++++.+++||++. .|...+|+.-.+-|+|||+++
T Consensus 112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 112 CNDIRHVEIK--NASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred ECChhhCCCC--CCCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 5577543333 5789999999999743 123347888888999999999
Q ss_pred EEecccCC
Q 036835 210 LTFIGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
++-..+..
T Consensus 159 i~d~~~~~ 166 (239)
T TIGR00740 159 LSEKFRFE 166 (239)
T ss_pred EeecccCC
Confidence 98765543
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.54 E-value=6.9e-07 Score=79.76 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|..+..+.. . ...+|+.-|+.. +.....+... . ...+ +..
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-~~~~~a~~~~------~--~~~~--i~~ 103 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-KMVNIAKLRN------S--DKNK--IEF 103 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-HHHHHHHHHc------C--cCCc--eEE
Confidence 3457999999999998776541 1 125778788752 1111111110 0 0011 223
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.+++...-+|++++|+++|..++++++. .|...+|+.-++-|+|||++
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~~-------------------------------~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILHLSY-------------------------------ADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHhCCH-------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence 44577666688999999999887765321 23445888888899999999
Q ss_pred EEEecccCC
Q 036835 209 FLTFIGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
+++-+....
T Consensus 153 vi~d~~~~~ 161 (263)
T PTZ00098 153 LITDYCADK 161 (263)
T ss_pred EEEEecccc
Confidence 998876544
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.52 E-value=3.6e-07 Score=78.94 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=70.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+.+ .+..+++--|+.. ......+ ..+......+ +..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~------~~~~~~~~~~--v~~~ 101 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGR------QKVKDAGLHN--VELV 101 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHH------HHHHhcCCCc--eEEE
Confidence 35799999999999887665322 1246788888752 2211111 1111111112 2234
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+-.+|++++|++++..++||+++.. .+|+.-.+-|+|||+++
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~---------------------------------~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYM---------------------------------QVLREMYRVVKPGGKVV 148 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCeEEE
Confidence 446655456889999999999999964321 26666677789999999
Q ss_pred EEecccCC
Q 036835 210 LTFIGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+...+..+
T Consensus 149 ~~~~~~~~ 156 (231)
T TIGR02752 149 CLETSQPT 156 (231)
T ss_pred EEECCCCC
Confidence 87766543
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.49 E-value=1.3e-06 Score=66.54 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=63.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.+.+.. +..+++--|.-. ++-.+.+.... ......++ .-+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------~~~~v~gvD~s~-~~~~~a~~~~~-----~~~~~~~i--~~~~ 58 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------PGARVVGVDISP-EMLEIARERAA-----EEGLSDRI--TFVQ 58 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------TTSEEEEEESSH-HHHHHHHHHHH-----HTTTTTTE--EEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------CCCEEEEEeCCH-HHHHHHHHHHH-----hcCCCCCe--EEEE
Confidence 3689999999999999887411 235566656531 22222221110 00011121 1233
Q ss_pred CCcccccC-CCCceeEEEecc-ceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 131 GSFYERLF-QSRSINFIHSSY-SVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 ~SFy~~l~-p~~Svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++ .... ..+.+|++++.. ++|++-.. .+...+|+.-.+-|+|||+|
T Consensus 59 ~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 59 GDA-EFDPDFLEPFDLVICSGFTLHFLLPL------------------------------DERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp SCC-HGGTTTSSCEEEEEECSGSGGGCCHH------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred Ccc-ccCcccCCCCCEEEECCCccccccch------------------------------hHHHHHHHHHHHhcCCCcEE
Confidence 455 2222 333499999988 66643221 34556899999999999999
Q ss_pred EEEe
Q 036835 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
++..
T Consensus 108 vi~~ 111 (112)
T PF12847_consen 108 VINT 111 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.48 E-value=6.3e-07 Score=79.36 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=76.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||||--|+.+.+.+ . +-+|+.-|.. .=--... +++..+....+ +.-+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-------------g--~g~v~~~D~s-----~~ML~~a--~~k~~~~~~~~--i~fv 106 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-------------G--TGEVVGLDIS-----ESMLEVA--REKLKKKGVQN--VEFV 106 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-------------C--CceEEEEECC-----HHHHHHH--HHHhhccCccc--eEEE
Confidence 46999999999999999887443 1 3555555554 3111111 22222211112 3334
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-|+.-+-.||++|+|++..++.||++.+.+. .|+.-.+=|+|||+++
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~---------------------------------aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDK---------------------------------ALKEMYRVLKPGGRLL 153 (238)
T ss_pred EechhhCCCCCCccCEEEeeehhhcCCCHHH---------------------------------HHHHHHHhhcCCeEEE
Confidence 5588888899999999999999999887665 3344444459999999
Q ss_pred EEecccCCCCC
Q 036835 210 LTFIGRSIADP 220 (242)
Q Consensus 210 l~~~g~~~~~~ 220 (242)
+.-+.+.+..+
T Consensus 154 vle~~~p~~~~ 164 (238)
T COG2226 154 VLEFSKPDNPV 164 (238)
T ss_pred EEEcCCCCchh
Confidence 99999976643
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.47 E-value=8.9e-08 Score=72.08 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=48.2
Q ss_pred eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcC-CCCceeeccCCCc
Q 036835 55 ADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDK-FGPCFIAGMPGSF 133 (242)
Q Consensus 55 aDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~vp~SF 133 (242)
+|+|||+|..+..++... |..+++..|... ++-..- ++.+.... .....+.....+.
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~-~~l~~a------~~~~~~~~~~~~~~~~~~~~~~ 58 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISP-SMLERA------RERLAELGNDNFERLRFDVLDL 58 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSS-STTSTT------CCCHHHCT---EEEEE--SSS-
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHH------HHHhhhcCCcceeEEEeecCCh
Confidence 699999999999877333 358888888863 111111 11111110 0112222322232
Q ss_pred ccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 134 YERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 134 y~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
.. ..+++++|+|+++.++||+. |+..+|+.-++-|+|||+|
T Consensus 59 ~~-~~~~~~fD~V~~~~vl~~l~---------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 59 FD-YDPPESFDLVVASNVLHHLE---------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---CCC----SEEEEE-TTS--S----------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hh-cccccccceehhhhhHhhhh---------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 12 22337999999999999982 2333888888999999986
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=98.45 E-value=1.4e-06 Score=80.52 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCC-CCceeec
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKF-GPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~ 128 (242)
...+|+|+|||+|.++..+.+.. ..+|+--|+..+ .-...+.+ ...... .+ +..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~-~i~~a~~~------~~~~g~~~~--v~~ 172 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPV-QAARANAL------AAAQGLSDK--VSF 172 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHH-HHHHHHHH------HHhcCCCCc--eEE
Confidence 45799999999999988776321 134555555421 11111111 110010 11 112
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+-+++.+.-||++++|+++|..++|++.+.+ .+|+.-.+-|+|||++
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~---------------------------------~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMESGEHMPDKR---------------------------------KFVQELARVAAPGGRI 219 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCchhccCCHH---------------------------------HHHHHHHHHcCCCcEE
Confidence 3346666667899999999999988754311 2666667778999999
Q ss_pred EEEecccCC
Q 036835 209 FLTFIGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
+++......
T Consensus 220 vi~~~~~~~ 228 (340)
T PLN02244 220 IIVTWCHRD 228 (340)
T ss_pred EEEEecccc
Confidence 998876543
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.41 E-value=1.5e-06 Score=74.25 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=63.3
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|.+++.+.+ + -.+|+.-|+.. +.-...+... ......+ +..+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~-~~i~~a~~~~------~~~~~~~--v~~~~ 84 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNP-MSIANLERIK------AAENLDN--LHTAV 84 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCH-HHHHHHHHHH------HHcCCCc--ceEEe
Confidence 47999999999999987752 1 14566667742 1212222111 1111111 22233
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.++.. +-+++++|+++|+.++||++. .|...+++.-++-|+|||++++
T Consensus 85 ~d~~~-~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 85 VDLNN-LTFDGEYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cChhh-CCcCCCcCEEEEecchhhCCH-------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 45532 333578999999999999642 1333477777888899999654
Q ss_pred -Eeccc
Q 036835 211 -TFIGR 215 (242)
Q Consensus 211 -~~~g~ 215 (242)
..+..
T Consensus 133 ~~~~~~ 138 (197)
T PRK11207 133 VAAMDT 138 (197)
T ss_pred EEEecC
Confidence 55543
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.41 E-value=7.1e-07 Score=78.85 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=65.4
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcC-CCCceee
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDK-FGPCFIA 127 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~ 127 (242)
+...+|+|+|||+|..+..+.+ . -.+|+..|+.. +.-...+. ...... ..++ .
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~-~~l~~a~~------~~~~~g~~~~v--~ 96 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSA-EMIQRAKQ------AAEAKGVSDNM--Q 96 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHHH------HHHhcCCccce--E
Confidence 3467999999999998876651 1 14677777642 22222211 111111 0111 1
Q ss_pred ccCCCcccc-cCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 128 GMPGSFYER-LFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 128 ~vp~SFy~~-l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+-+++.+- -++++++|++++..++||+.+.+. +|+.-++-|+|||
T Consensus 97 ~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~---------------------------------~l~~~~~~LkpgG 143 (255)
T PRK11036 97 FIHCAAQDIAQHLETPVDLILFHAVLEWVADPKS---------------------------------VLQTLWSVLRPGG 143 (255)
T ss_pred EEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHH---------------------------------HHHHHHHHcCCCe
Confidence 122354332 146789999999999999864222 5666667789999
Q ss_pred eEEEEeccc
Q 036835 207 RMFLTFIGR 215 (242)
Q Consensus 207 ~lvl~~~g~ 215 (242)
++++.+...
T Consensus 144 ~l~i~~~n~ 152 (255)
T PRK11036 144 ALSLMFYNA 152 (255)
T ss_pred EEEEEEECc
Confidence 999886553
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.41 E-value=1.3e-06 Score=74.43 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=61.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
+.+|+|+|||+|.+++.+.+ + -.+|+--|+.. +.-...+.... .... + +....
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~-~~l~~a~~~~~------~~~~-~--v~~~~ 83 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNP-ASIASVLDMKA------RENL-P--LRTDA 83 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHHHHH------HhCC-C--ceeEe
Confidence 57999999999999987752 1 14566667752 22222221111 1111 1 11122
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.++ ....+++++|+++|+.++||++. .++..+++.-++-|+|||++++
T Consensus 84 ~d~-~~~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 84 YDI-NAAALNEDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccc-hhccccCCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhCCCcEEEE
Confidence 233 12223568999999999999643 2334478888888999999655
Q ss_pred Ee
Q 036835 211 TF 212 (242)
Q Consensus 211 ~~ 212 (242)
..
T Consensus 132 ~~ 133 (195)
T TIGR00477 132 VA 133 (195)
T ss_pred EE
Confidence 43
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.39 E-value=1.1e-06 Score=84.29 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=70.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.+.. ..+++--|+.. +.-...+.. ... ...-+..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvDiS~-~~l~~A~~~------~~~---~~~~v~~~ 319 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF----------------DVHVVGIDLSV-NMISFALER------AIG---RKCSVEFE 319 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc----------------CCEEEEEECCH-HHHHHHHHH------hhc---CCCceEEE
Confidence 45799999999998776554211 24677777752 211111110 000 01112223
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-+++....+|++++|+++|..+++|+.+.+ .+|+.-++-|+|||+++
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~---------------------------------~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRDTILHIQDKP---------------------------------ALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EcCcccCCCCCCCEEEEEECCcccccCCHH---------------------------------HHHHHHHHHcCCCeEEE
Confidence 457777778889999999999999975422 26777777889999999
Q ss_pred EEecccCCC
Q 036835 210 LTFIGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
++.+.+...
T Consensus 367 i~~~~~~~~ 375 (475)
T PLN02336 367 ISDYCRSPG 375 (475)
T ss_pred EEEeccCCC
Confidence 998877543
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.39 E-value=3.9e-06 Score=74.01 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|.+++.+...+ ..|..+++.-|+.. ++....+.. +...... .-+..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~-~ml~~A~~~------~~~~~~~-~~v~~ 113 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-AMIERCRRH------IDAYKAP-TPVDV 113 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHHH------HHhcCCC-CCeEE
Confidence 345799999999999887765322 11346787777741 333322211 1110000 01222
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.+++.+- |....|++++..++||++. . +...+|+.-.+-|+|||.|
T Consensus 114 ~~~d~~~~--~~~~~D~vv~~~~l~~l~~--~-----------------------------~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 114 IEGDIRDI--AIENASMVVLNFTLQFLEP--S-----------------------------ERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred EeCChhhC--CCCCCCEEehhhHHHhCCH--H-----------------------------HHHHHHHHHHHhcCCCCEE
Confidence 44566443 3335899999999999763 1 1223677778888999999
Q ss_pred EEEeccc
Q 036835 209 FLTFIGR 215 (242)
Q Consensus 209 vl~~~g~ 215 (242)
+++..-.
T Consensus 161 ~l~e~~~ 167 (247)
T PRK15451 161 VLSEKFS 167 (247)
T ss_pred EEEEecC
Confidence 9986433
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.35 E-value=1.9e-06 Score=79.43 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=66.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..+..+.. . ..+|+--|.-. +.-...+. ....... .--+..+.
T Consensus 132 g~~ILDIGCG~G~~s~~La~--------~---------g~~V~GID~s~-~~i~~Ar~------~~~~~~~-~~~i~~~~ 186 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--------M---------GATVTGVDAVD-KNVKIARL------HADMDPV-TSTIEYLC 186 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--------c---------CCEEEEEeCCH-HHHHHHHH------HHHhcCc-ccceeEEe
Confidence 46999999999998765531 1 24666667652 11111110 0000000 00112233
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++.+-.++++++|++++..++||+.+.+. ||+.-++-|+|||++++
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~---------------------------------~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVANPAE---------------------------------FCKSLSALTIPNGATVL 233 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCCHHH---------------------------------HHHHHHHHcCCCcEEEE
Confidence 455433457789999999999999766332 78888888999999999
Q ss_pred EecccC
Q 036835 211 TFIGRS 216 (242)
Q Consensus 211 ~~~g~~ 216 (242)
+++.+.
T Consensus 234 st~nr~ 239 (322)
T PLN02396 234 STINRT 239 (322)
T ss_pred EECCcC
Confidence 987654
No 23
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.33 E-value=8.1e-07 Score=77.61 Aligned_cols=103 Identities=18% Similarity=0.342 Sum_probs=67.3
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.+-+|+|||||.|..|.++.+ +. |.-+++--|-. +++-.+-...-.+-.|.-+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~--------Rw-------P~A~i~GiDsS-----------~~Mla~Aa~rlp~~~f~~a- 82 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLAR--------RW-------PDAVITGIDSS-----------PAMLAKAAQRLPDATFEEA- 82 (257)
T ss_pred ccceeeecCCCCCHHHHHHHH--------hC-------CCCeEeeccCC-----------HHHHHHHHHhCCCCceecc-
Confidence 478999999999999988873 32 34555544433 2221111111111122222
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+- ...-|+...|+++|..++|||.+=|. .|.+--.+|.|||.|+
T Consensus 83 --Dl-~~w~p~~~~dllfaNAvlqWlpdH~~---------------------------------ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 83 --DL-RTWKPEQPTDLLFANAVLQWLPDHPE---------------------------------LLPRLVSQLAPGGVLA 126 (257)
T ss_pred --cH-hhcCCCCccchhhhhhhhhhccccHH---------------------------------HHHHHHHhhCCCceEE
Confidence 22 55669999999999999999876554 5556667889999999
Q ss_pred EEeccc
Q 036835 210 LTFIGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+.+..-
T Consensus 127 VQmPdN 132 (257)
T COG4106 127 VQMPDN 132 (257)
T ss_pred EECCCc
Confidence 988753
No 24
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.33 E-value=7e-07 Score=76.63 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 036835 24 IQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFN 103 (242)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn 103 (242)
+|+.+.....|.+-........-......+|+|+|||+|..+..+.... |..+|+-.|.-. +.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~-~~i 77 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE-PGV 77 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech-HHH
Confidence 4666666666766433322211111246899999999999988775221 335677777753 111
Q ss_pred HHhhcCchhHhhhhhcCCCCceeeccCCCc---ccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHH
Q 036835 104 SIFESLPDFYKRIKKDKFGPCFIAGMPGSF---YERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVC 180 (242)
Q Consensus 104 ~lf~~l~~~~~~l~~~~~~~~f~~~vp~SF---y~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~ 180 (242)
..-+. ........++. .+-++. +.+.++++++|.+++.+..+|...... +..
T Consensus 78 ~~a~~------~~~~~~~~~v~--~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-----~~~------------ 132 (202)
T PRK00121 78 GKALK------KIEEEGLTNLR--LLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-----KRR------------ 132 (202)
T ss_pred HHHHH------HHHHcCCCCEE--EEecCHHHHHHHHcCccccceEEEECCCCCCCcccc-----ccc------------
Confidence 11110 01111112322 233454 234578899999999888888543211 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCceEEEEec
Q 036835 181 QAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 181 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.+...||+.-++-|+|||++++++.
T Consensus 133 --------~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 133 --------LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred --------cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 0123377777888899999999763
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.31 E-value=2.7e-06 Score=73.01 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=70.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhc-CCCCceeecc
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKD-KFGPCFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~v 129 (242)
..+|+|+|||+|..+..+.... + +..+++..|+..+ .-...+.. .... ...++ ..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~-------------~-~~~~v~~~D~s~~-~~~~a~~~------~~~~~~~~~~--~~~ 108 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV-------------G-KTGEVVGLDFSEG-MLAVGREK------LRDLGLSGNV--EFV 108 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc-------------C-CCCeEEEEeCCHH-HHHHHHHh------hcccccccCe--EEE
Confidence 4799999999999887665322 1 1467888888531 11111111 0000 00111 123
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+..++++++|++++++++|++++.+. +|+...+-|+|||+++
T Consensus 109 ~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~---------------------------------~l~~~~~~L~~gG~li 155 (239)
T PRK00216 109 QGDAEALPFPDNSFDAVTIAFGLRNVPDIDK---------------------------------ALREMYRVLKPGGRLV 155 (239)
T ss_pred ecccccCCCCCCCccEEEEecccccCCCHHH---------------------------------HHHHHHHhccCCcEEE
Confidence 3466565567889999999999998655332 6777778899999999
Q ss_pred EEecccCC
Q 036835 210 LTFIGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+..+....
T Consensus 156 ~~~~~~~~ 163 (239)
T PRK00216 156 ILEFSKPT 163 (239)
T ss_pred EEEecCCC
Confidence 87765543
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.29 E-value=4.3e-06 Score=67.93 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=66.6
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+..+|+|+|||+|..+..+.... .|..+++.-|+-. +.-...+. ........+ +..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~~~~i~gvD~s~-~~i~~a~~------~~~~~~~~n--i~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL--------------NPGAKIIGVDISE-EMIEYAKK------RAKELGLDN--IEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS--------------TTTSEEEEEESSH-HHHHHHHH------HHHHTTSTT--EEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--------------CCCCEEEEEECcH-HHHHHhhc------ccccccccc--cceE
Confidence 46899999999999988776311 1246788888762 11111111 111111222 2222
Q ss_pred CCCccccc---CCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 130 PGSFYERL---FQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 p~SFy~~l---~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
-+++.+ + ++ +.+|++++..++||+.... .+|+.-.+-|++||
T Consensus 60 ~~d~~~-l~~~~~-~~~D~I~~~~~l~~~~~~~---------------------------------~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 60 QGDIED-LPQELE-EKFDIIISNGVLHHFPDPE---------------------------------KVLKNIIRLLKPGG 104 (152)
T ss_dssp ESBTTC-GCGCSS-TTEEEEEEESTGGGTSHHH---------------------------------HHHHHHHHHEEEEE
T ss_pred Eeehhc-cccccC-CCeeEEEEcCchhhccCHH---------------------------------HHHHHHHHHcCCCc
Confidence 345544 3 33 8999999999998865432 26777777889999
Q ss_pred eEEEEecc
Q 036835 207 RMFLTFIG 214 (242)
Q Consensus 207 ~lvl~~~g 214 (242)
.+++..+.
T Consensus 105 ~~i~~~~~ 112 (152)
T PF13847_consen 105 ILIISDPN 112 (152)
T ss_dssp EEEEEEEE
T ss_pred EEEEEECC
Confidence 99998887
No 27
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.28 E-value=7.5e-07 Score=78.50 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|+.+...+ .|..+|+--|+. .-.-.. -+.++......++ .-+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s-----~~ML~~--a~~k~~~~~~~~i--~~v 103 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDIS-----PGMLEV--ARKKLKREGLQNI--EFV 103 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES------HHHHHH--HHHHHHHTT--SE--EEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCC-----HHHHHH--HHHHHHhhCCCCe--eEE
Confidence 45799999999999888775222 134577766665 211111 1122222112232 234
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-++.-+--||++|+|.+.+++.+|-+.+.+. .|+.-.+=|+|||+++
T Consensus 104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~---------------------------------~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRER---------------------------------ALREMYRVLKPGGRLV 150 (233)
T ss_dssp E-BTTB--S-TT-EEEEEEES-GGG-SSHHH---------------------------------HHHHHHHHEEEEEEEE
T ss_pred EcCHHHhcCCCCceeEEEHHhhHHhhCCHHH---------------------------------HHHHHHHHcCCCeEEE
Confidence 4577666689999999999999998654222 4445555669999999
Q ss_pred EEecccCCC
Q 036835 210 LTFIGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+.-+++...
T Consensus 151 ile~~~p~~ 159 (233)
T PF01209_consen 151 ILEFSKPRN 159 (233)
T ss_dssp EEEEEB-SS
T ss_pred EeeccCCCC
Confidence 999988764
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.26 E-value=2.3e-06 Score=77.10 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=62.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
+-+|+|+|||+|.+++.+.+ . -.+|+.-|... ..-...+.. ...... + +..+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~-~ai~~~~~~------~~~~~l-~--v~~~~ 173 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQ-QSLENLQEI------AEKENL-N--IRTGL 173 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCH-HHHHHHHHH------HHHcCC-c--eEEEE
Confidence 35999999999999987752 1 14566666642 111111111 111111 1 11222
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.++-. ..+++++|+|+|..++|+++. .++..+|+.-.+-|+|||++++
T Consensus 174 ~D~~~-~~~~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 174 YDINS-ASIQEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred echhc-ccccCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 34422 223789999999999999742 2444588888889999999776
Q ss_pred Eec
Q 036835 211 TFI 213 (242)
Q Consensus 211 ~~~ 213 (242)
...
T Consensus 222 v~~ 224 (287)
T PRK12335 222 VCA 224 (287)
T ss_pred EEe
Confidence 543
No 29
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.25 E-value=8e-06 Score=74.28 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 036835 34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
.+|++..+++.... +...+|+|+|||+|..|..+++...+ ..+++--|+.. ++-...+
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~-~mL~~a~------ 105 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISA-DALKESA------ 105 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCH-HHHHHHH------
Confidence 34444444443221 33478999999999999988754411 26777778873 2222111
Q ss_pred hhhhhcCCCCceeeccCCCccccc-CCCC----ceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHH
Q 036835 114 KRIKKDKFGPCFIAGMPGSFYERL-FQSR----SINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQ 188 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vp~SFy~~l-~p~~----Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~ 188 (242)
..+.. ..+.+-+.++-|+|.+.+ +|.. ...++++.+++++++.
T Consensus 106 ~~l~~-~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~------------------------------- 153 (301)
T TIGR03438 106 AALAA-DYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP------------------------------- 153 (301)
T ss_pred HHHHh-hCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------------
Confidence 11111 112344555677887533 3333 4567777788888652
Q ss_pred HHHHHHHHHHHhhcccCceEEEEecccCCC
Q 036835 189 RDFSAFLSLRSEEIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
.|..+||+.-++-|+|||+|++.+-...+.
T Consensus 154 ~e~~~~L~~i~~~L~pgG~~lig~d~~~~~ 183 (301)
T TIGR03438 154 EEAVAFLRRIRQLLGPGGGLLIGVDLVKDP 183 (301)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 234458888888999999999988766554
No 30
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=1.2e-05 Score=72.06 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=33.9
Q ss_pred cccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 135 ERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 135 ~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+..+|.+++|+|+|.+++||++. | +...+|+.-++-|+|||+|+++
T Consensus 196 ~~~~~~~~fD~I~crnvl~yf~~-~------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 196 AESPPLGDFDLIFCRNVLIYFDE-P------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCCCccCCCCEEEechhHHhCCH-H------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 33346889999999999999754 1 1223666667777999999984
No 31
>PRK08317 hypothetical protein; Provisional
Probab=98.24 E-value=6.2e-06 Score=70.32 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=66.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.... .|..+++--|+..+-....-+. .......-.| +
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~-------~~~~~~~~~~---~ 74 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKER-------AAGLGPNVEF---V 74 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHH-------hhCCCCceEE---E
Confidence 46799999999998877665222 1235677777752111111000 0000001122 2
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++....++++++|++++..++||+.+.+. +|+.-.+-|+|||+++
T Consensus 75 ~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~---------------------------------~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 75 RGDADGLPFPDGSFDAVRSDRVLQHLEDPAR---------------------------------ALAEIARVLRPGGRVV 121 (241)
T ss_pred ecccccCCCCCCCceEEEEechhhccCCHHH---------------------------------HHHHHHHHhcCCcEEE
Confidence 2355444567889999999999999755222 6777778889999999
Q ss_pred EEecc
Q 036835 210 LTFIG 214 (242)
Q Consensus 210 l~~~g 214 (242)
+....
T Consensus 122 ~~~~~ 126 (241)
T PRK08317 122 VLDTD 126 (241)
T ss_pred EEecC
Confidence 98753
No 32
>PRK06922 hypothetical protein; Provisional
Probab=98.24 E-value=2.8e-06 Score=84.63 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..+..+.+. .|..+++--|+.. +.-...+ ....... .++ ..+.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~---------------~P~~kVtGIDIS~-~MLe~Ar------arl~~~g-~~i--e~I~ 473 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE---------------TEDKRIYGIDISE-NVIDTLK------KKKQNEG-RSW--NVIK 473 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHH------HHhhhcC-CCe--EEEE
Confidence 579999999999876655421 1357888888873 1111111 1110000 111 1122
Q ss_pred CCccc--ccCCCCceeEEEeccceeec-ccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCce
Q 036835 131 GSFYE--RLFQSRSINFIHSSYSVHWL-SKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 131 ~SFy~--~l~p~~Svdl~~Ss~alhWL-s~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
++... ..|+++++|++++++++||+ +.+|.. +.-+ ..+|...+|+.-.+-|+|||+
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~-----g~~f----------------~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYE-----GKKF----------------NHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccc-----cccc----------------cHHHHHHHHHHHHHHcCCCcE
Confidence 34422 23788999999999999965 556641 1000 024667788888899999999
Q ss_pred EEEEe
Q 036835 208 MFLTF 212 (242)
Q Consensus 208 lvl~~ 212 (242)
+++.-
T Consensus 533 LII~D 537 (677)
T PRK06922 533 IIIRD 537 (677)
T ss_pred EEEEe
Confidence 99974
No 33
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.24 E-value=1.2e-05 Score=71.94 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=42.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCC-ceeec
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGP-CFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~ 128 (242)
...+|+|+|||+|..+..+...+ .. ....+++-.|+.. ..-....+ ..++ .|..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~----~~--------~~~~~v~giD~s~-----------~~l~~A~~-~~~~~~~~~- 139 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL----PE--------ITTMQLFGLDISK-----------VAIKYAAK-RYPQVTFCV- 139 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc----cc--------ccCCeEEEECCCH-----------HHHHHHHH-hCCCCeEEE-
Confidence 35789999999999888776332 10 0114678788752 11110111 1112 2322
Q ss_pred cCCCcccccCCCCceeEEEecc
Q 036835 129 MPGSFYERLFQSRSINFIHSSY 150 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~ 150 (242)
++..+-.|+++++|+++|..
T Consensus 140 --~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 140 --ASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred --eecccCCCcCCceeEEEEec
Confidence 35545457889999999854
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.24 E-value=4.9e-06 Score=70.64 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=67.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.... + ...+++.-|+.. ++-...+. ... ...++- .+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~~~------~~~--~~~~i~--~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVAKK------KSE--LPLNIE--FI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHHHH------Hhc--cCCCce--EE
Confidence 46899999999999887665222 1 125677777642 11111111 000 001111 23
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+..++++++|+++++..+|+..+. ..+|+...+.|+|||+++
T Consensus 94 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 94 QADAEALPFEDNSFDAVTIAFGLRNVTDI---------------------------------QKALREMYRVLKPGGRLV 140 (223)
T ss_pred ecchhcCCCCCCcEEEEEEeeeeCCcccH---------------------------------HHHHHHHHHHcCCCcEEE
Confidence 34666666788899999999999885432 127888888899999999
Q ss_pred EEeccc
Q 036835 210 LTFIGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+.....
T Consensus 141 ~~~~~~ 146 (223)
T TIGR01934 141 ILEFSK 146 (223)
T ss_pred EEEecC
Confidence 876643
No 35
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.24 E-value=1.8e-06 Score=79.45 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=66.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.+.. . + + -+|+--|. +-.+...++..... .. ...++. .++
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~----g---~-~~V~GiD~-S~~~l~q~~a~~~~---~~--~~~~i~--~~~ 178 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------A----G---A-KLVVGIDP-SQLFLCQFEAVRKL---LG--NDQRAH--LLP 178 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEcC-CHHHHHHHHHHHHh---cC--CCCCeE--EEe
Confidence 46999999999999876641 1 1 2 24777773 32333333222111 00 011222 244
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++ +.+-.++++|+++|..++||..+. ..+|+.-++-|+|||.+++
T Consensus 179 ~d~-e~lp~~~~FD~V~s~~vl~H~~dp---------------------------------~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 179 LGI-EQLPALKAFDTVFSMGVLYHRRSP---------------------------------LDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCH-HHCCCcCCcCEEEECChhhccCCH---------------------------------HHHHHHHHHhcCCCcEEEE
Confidence 565 334337899999999999884331 2278888888999999999
Q ss_pred EecccCC
Q 036835 211 TFIGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
..+..+.
T Consensus 225 ~~~~i~~ 231 (322)
T PRK15068 225 ETLVIDG 231 (322)
T ss_pred EEEEecC
Confidence 8775543
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.17 E-value=1.7e-05 Score=71.82 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=70.4
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
....+|+|+|||+|..++.+.+.. |..+++.-|+| ..-...+. ....... .--+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~---------------p~~~~~~~D~~--~~~~~a~~------~~~~~gl-~~rv~~ 203 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF---------------PELDSTILNLP--GAIDLVNE------NAAEKGV-ADRMRG 203 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC---------------CCCEEEEEecH--HHHHHHHH------HHHhCCc-cceEEE
Confidence 345799999999998777665221 45777777987 32222221 1111110 112445
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++++|++.-+|+ .|+++.+..+|-..+ .+-..+|+.-.+-|+|||++
T Consensus 204 ~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 204 IAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred EecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 778998755665 499988888873211 12233788888899999999
Q ss_pred EEEecccCC
Q 036835 209 FLTFIGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
++.-+-.++
T Consensus 251 ~i~d~~~~~ 259 (306)
T TIGR02716 251 LILDMVIDD 259 (306)
T ss_pred EEEEeccCC
Confidence 999764443
No 37
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.13 E-value=3.1e-05 Score=67.01 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=67.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+.+.. .+.-+|+--|+-. .+ .++ ++ ..+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~------------~v--~~i 96 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIV------------GV--DFL 96 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCC------------Cc--EEE
Confidence 34689999999999887666322 1235677777642 11 111 11 123
Q ss_pred CCCcccc--------cCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 036835 130 PGSFYER--------LFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEE 201 (242)
Q Consensus 130 p~SFy~~--------l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 201 (242)
-+++.+. -++++++|+++|..+.||... |. ... ..+ .......|+.-.+-
T Consensus 97 ~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~-------------------~d~-~~~-~~~~~~~L~~~~~~ 154 (209)
T PRK11188 97 QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA-------------------VDI-PRA-MYLVELALDMCRDV 154 (209)
T ss_pred ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH-------------------HHH-HHH-HHHHHHHHHHHHHH
Confidence 4466542 257889999999999999332 11 000 000 11134567777777
Q ss_pred cccCceEEEEecccCC
Q 036835 202 IVSGGRMFLTFIGRSI 217 (242)
Q Consensus 202 L~pGG~lvl~~~g~~~ 217 (242)
|+|||++++..+....
T Consensus 155 LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 155 LAPGGSFVVKVFQGEG 170 (209)
T ss_pred cCCCCEEEEEEecCcC
Confidence 8999999998775543
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.13 E-value=1.3e-05 Score=71.29 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=64.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
..-+|+|+|||+|..++.+...+ + +..+|+--|.-. ..-...+. ........++ ..+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~-----------g---~~~~v~gvD~s~-~~l~~A~~------~~~~~g~~~v--~~~ 133 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV-----------G---PTGKVIGVDMTP-EMLAKARA------NARKAGYTNV--EFR 133 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEECCCH-HHHHHHHH------HHHHcCCCCE--EEE
Confidence 45799999999998776544211 1 235677777642 11111111 1111111121 223
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+--+|++++|+++|..++||..+.+. .|+.-.+-|+|||+++
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~---------------------------------~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLSPDKER---------------------------------VFKEAFRVLKPGGRFA 180 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCCCCHHH---------------------------------HHHHHHHHcCCCcEEE
Confidence 3466444467889999999999998533221 4555566679999999
Q ss_pred EEeccc
Q 036835 210 LTFIGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
++.+..
T Consensus 181 i~~~~~ 186 (272)
T PRK11873 181 ISDVVL 186 (272)
T ss_pred EEEeec
Confidence 986643
No 39
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.13 E-value=5.8e-06 Score=71.09 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=62.1
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCC
Q 036835 53 NVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~S 132 (242)
+|+|+|||+|..+..+.+.. +..+++--|+.. +.-...+. ......... -+..+.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---------------~~~~v~gid~s~-~~~~~a~~------~~~~~gl~~-~i~~~~~d 58 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---------------PHLQLHGYTISP-EQAEVGRE------RIRALGLQG-RIRIFYRD 58 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHH------HHHhcCCCc-ceEEEecc
Confidence 69999999999877654221 235666666632 11111111 110000000 11122334
Q ss_pred cccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEe
Q 036835 133 FYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 133 Fy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
+.+..+ ++++|+++|..++|++.+ +..+|+.-++-|+|||++++..
T Consensus 59 ~~~~~~-~~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 59 SAKDPF-PDTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred cccCCC-CCCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 433333 468999999999998643 2237888888899999999988
Q ss_pred ccc
Q 036835 213 IGR 215 (242)
Q Consensus 213 ~g~ 215 (242)
+..
T Consensus 105 ~~~ 107 (224)
T smart00828 105 FIA 107 (224)
T ss_pred ccc
Confidence 754
No 40
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=70.91 Aligned_cols=139 Identities=20% Similarity=0.322 Sum_probs=84.7
Q ss_pred chHHHhhHH---HHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEE
Q 036835 16 ASYAKNSDI---QRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQV 92 (242)
Q Consensus 16 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv 92 (242)
.-|.+||.+ |+...++++.+|.- ..+++--|+|+|||||-.+-.+- + +--++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~----------------~-~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS----------------D-SGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec----------------c-CCceE
Confidence 358888876 55555555554431 12358999999999997654321 1 23556
Q ss_pred EecCCCCCchHHHhhcCchhHh-hhhhcCCCCceeeccCCCc-ccccCCCCceeEEEeccceeecccCCCcccCCCcceE
Q 036835 93 FLNDLPGNDFNSIFESLPDFYK-RIKKDKFGPCFIAGMPGSF-YERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIY 170 (242)
Q Consensus 93 ~~nDLp~NDFn~lf~~l~~~~~-~l~~~~~~~~f~~~vp~SF-y~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~ 170 (242)
+--|.. +.+-+ .+.. ....-++.+ ++ -+--|+++++|=++|-+|+|||-+.-....
T Consensus 76 iGvDiS-----------psML~~a~~~-e~egdlil~---DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~------- 133 (270)
T KOG1541|consen 76 IGVDIS-----------PSMLEQAVER-ELEGDLILC---DMGEGLPFRPGTFDGVISISAVQWLCNADKSLH------- 133 (270)
T ss_pred EeecCC-----------HHHHHHHHHh-hhhcCeeee---ecCCCCCCCCCccceEEEeeeeeeecccCcccc-------
Confidence 666664 22111 1110 001111111 11 245579999999999999999877644221
Q ss_pred EcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccC
Q 036835 171 ITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRS 216 (242)
Q Consensus 171 ~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
.+ ++.+.+|+..-..-|++|++-|+.+.-.+
T Consensus 134 ------~P---------~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 134 ------VP---------KKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred ------Ch---------HHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 11 35677799888889999999999886443
No 41
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.11 E-value=4e-05 Score=66.08 Aligned_cols=105 Identities=11% Similarity=0.250 Sum_probs=59.4
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEE
Q 036835 14 GEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVF 93 (242)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~ 93 (242)
|.. |-+....+ ........++.+.+..+ +..-+|+|+|||+|.++..+.+.. +..+++
T Consensus 14 g~~-~~~rn~~~-~~~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQ-SLVAAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIY 71 (204)
T ss_pred cch-hhhccccH-HHHHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEE
Confidence 444 44444333 22344455666655533 345789999999998887665221 235666
Q ss_pred ecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeec
Q 036835 94 LNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWL 155 (242)
Q Consensus 94 ~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWL 155 (242)
--|+-. +.-...+. .+ .+-.+ +.++..+ .++++++|++++..++|++
T Consensus 72 giDiS~-~~l~~A~~------~~----~~~~~---~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 72 GVEINE-YAVEKAKA------YL----PNINI---IQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred EEECCH-HHHHHHHh------hC----CCCcE---EEeeccC-CCCCCCEEEEEECChhhhC
Confidence 666652 11111111 00 01112 3346655 6789999999999999875
No 42
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=3.4e-06 Score=74.47 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=69.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec-
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG- 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~- 128 (242)
....++|+|||-|..+..+...-| -+++.-|.. ...-++-++...+.+-+.-
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS-----------~~M~~s~~~~qdp~i~~~~~ 124 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTS-----------YDMIKSCRDAQDPSIETSYF 124 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch----------------hheeeeecc-----------hHHHHHhhccCCCceEEEEE
Confidence 467899999999988776653322 344555554 1222221111112222221
Q ss_pred -cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCce
Q 036835 129 -MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 129 -vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
.---|.. |-.+|+|+++|+.++||..++|. .+..+..-|||.|.
T Consensus 125 v~DEE~Ld--f~ens~DLiisSlslHW~NdLPg---------------------------------~m~~ck~~lKPDg~ 169 (325)
T KOG2940|consen 125 VGDEEFLD--FKENSVDLIISSLSLHWTNDLPG---------------------------------SMIQCKLALKPDGL 169 (325)
T ss_pred ecchhccc--ccccchhhhhhhhhhhhhccCch---------------------------------HHHHHHHhcCCCcc
Confidence 1123333 78899999999999999999998 45567778899999
Q ss_pred EEEEecccCC
Q 036835 208 MFLTFIGRSI 217 (242)
Q Consensus 208 lvl~~~g~~~ 217 (242)
++-+++|-+.
T Consensus 170 FiasmlggdT 179 (325)
T KOG2940|consen 170 FIASMLGGDT 179 (325)
T ss_pred chhHHhcccc
Confidence 9999998765
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.11 E-value=5.5e-06 Score=62.73 Aligned_cols=100 Identities=22% Similarity=0.337 Sum_probs=57.4
Q ss_pred EeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCc
Q 036835 54 VADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSF 133 (242)
Q Consensus 54 IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SF 133 (242)
|+|+|||+|..+..+.... + ..|+.+++.-|+-. +.-...+ +.......+-.| +..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~-~~l~~~~------~~~~~~~~~~~~---~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISP-EMLELAK------KRFSEDGPKVRF---VQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-H-HHHHHHH------HHSHHTTTTSEE---EESCT
T ss_pred CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCH-HHHHHHH------HhchhcCCceEE---EECCH
Confidence 7999999999999887443 1 11347777777752 1111111 111111112233 33355
Q ss_pred ccccCCCCceeEEEeccc-eeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 134 YERLFQSRSINFIHSSYS-VHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 134 y~~l~p~~Svdl~~Ss~a-lhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
-+--++.+++|+++++.. +|++++ +++..+|+.-++-|+|||
T Consensus 59 ~~l~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 59 RDLPFSDGKFDLVVCSGLSLHHLSP-------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp TCHHHHSSSEEEEEE-TTGGGGSSH-------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred hHCcccCCCeeEEEEcCCccCCCCH-------------------------------HHHHHHHHHHHHHhCCCC
Confidence 333347779999999655 887554 456669999999999998
No 44
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.10 E-value=1.4e-05 Score=74.38 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.+.. +..+++.-|+.. ++....+.... ..++ ..+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~---------~~~i--~~i 165 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEP---------LKEC--KII 165 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhh---------ccCC--eEE
Confidence 35799999999999887665221 125677777742 22222221110 0111 124
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.++..+.-++++++|+++++.++|++.+.. ..|+.-.+-|+|||+++
T Consensus 166 ~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~---------------------------------~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------RGIKEAYRVLKIGGKAC 212 (340)
T ss_pred eccHHhCCCCCCceeEEEEcChhhhCCCHH---------------------------------HHHHHHHHhcCCCcEEE
Confidence 556655557889999999999999744311 15666677779999998
Q ss_pred EEec
Q 036835 210 LTFI 213 (242)
Q Consensus 210 l~~~ 213 (242)
+...
T Consensus 213 Ii~~ 216 (340)
T PLN02490 213 LIGP 216 (340)
T ss_pred EEEe
Confidence 8643
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.09 E-value=4.9e-06 Score=71.53 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC
Q 036835 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL 109 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l 109 (242)
....+.+.+++. .-++.+++|+|||.|+||+-+.+ + -+.|..-|....-...+-+ +
T Consensus 16 ~~~hs~v~~a~~------~~~~g~~LDlgcG~GRNalyLA~--------~---------G~~VtAvD~s~~al~~l~~-~ 71 (192)
T PF03848_consen 16 TPTHSEVLEAVP------LLKPGKALDLGCGEGRNALYLAS--------Q---------GFDVTAVDISPVALEKLQR-L 71 (192)
T ss_dssp ----HHHHHHCT------TS-SSEEEEES-TTSHHHHHHHH--------T---------T-EEEEEESSHHHHHHHHH-H
T ss_pred CCCcHHHHHHHh------hcCCCcEEEcCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHH-H
Confidence 344555666543 12468999999999999998862 1 1556666655222222211 1
Q ss_pred chhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHH
Q 036835 110 PDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQR 189 (242)
Q Consensus 110 ~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~ 189 (242)
.. ...+ + +...-.++-+. -+++..|+|+|...+|.|.. +
T Consensus 72 a~-~~~l------~--i~~~~~Dl~~~-~~~~~yD~I~st~v~~fL~~--~----------------------------- 110 (192)
T PF03848_consen 72 AE-EEGL------D--IRTRVADLNDF-DFPEEYDFIVSTVVFMFLQR--E----------------------------- 110 (192)
T ss_dssp HH-HTT-------T--EEEEE-BGCCB-S-TTTEEEEEEESSGGGS-G--G-----------------------------
T ss_pred Hh-hcCc------e--eEEEEecchhc-cccCCcCEEEEEEEeccCCH--H-----------------------------
Confidence 10 0111 1 22222344222 34578999999999998763 1
Q ss_pred HHHHHHHHHHhhcccCceEEEEecc
Q 036835 190 DFSAFLSLRSEEIVSGGRMFLTFIG 214 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
.+..+++.-.+.++|||++++..+-
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHhhcCCcEEEEEEEec
Confidence 1223677778889999998885553
No 46
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.07 E-value=5.4e-06 Score=76.24 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=63.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..+..++. . + + -.|+--|... .|-..|+..... .. ....+. ..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~--------~----g---~-~~v~GiDpS~-~ml~q~~~~~~~---~~--~~~~v~--~~~ 177 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLG--------H----G---A-KSLVGIDPTV-LFLCQFEAVRKL---LD--NDKRAI--LEP 177 (314)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEcCCH-HHHHHHHHHHHH---hc--cCCCeE--EEE
Confidence 46999999999998765541 1 1 2 2344445321 232222222111 10 001221 133
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++ +.+-+..++|+|+|..+++|+.+.. .+|+.-++-|+|||.|++
T Consensus 178 ~~i-e~lp~~~~FD~V~s~gvL~H~~dp~---------------------------------~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 178 LGI-EQLHELYAFDTVFSMGVLYHRKSPL---------------------------------EHLKQLKHQLVIKGELVL 223 (314)
T ss_pred CCH-HHCCCCCCcCEEEEcchhhccCCHH---------------------------------HHHHHHHHhcCCCCEEEE
Confidence 444 4555567899999999999953321 178888888999999999
Q ss_pred Eeccc
Q 036835 211 TFIGR 215 (242)
Q Consensus 211 ~~~g~ 215 (242)
.++..
T Consensus 224 etl~i 228 (314)
T TIGR00452 224 ETLVI 228 (314)
T ss_pred EEEEe
Confidence 87654
No 47
>PRK06202 hypothetical protein; Provisional
Probab=98.02 E-value=0.0002 Score=62.23 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
.+..+|+|+|||+|.++..+.... ++. .+..+++-.|+.. +.-...+.... ..+--+..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~-~~l~~a~~~~~--------~~~~~~~~~ 118 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP-RAVAFARANPR--------RPGVTFRQA 118 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH-HHHHHHHhccc--------cCCCeEEEE
Confidence 356899999999999888665332 111 1346888888863 22222221110 001112222
Q ss_pred cCCCcccccCCCCceeEEEeccceeeccc
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSK 157 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~ 157 (242)
....+ -++++++|+++++.++||+.+
T Consensus 119 ~~~~l---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 119 VSDEL---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred ecccc---cccCCCccEEEECCeeecCCh
Confidence 11111 136789999999999999865
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.00 E-value=1.7e-05 Score=76.02 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=63.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCC-ceeecc
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGP-CFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~v 129 (242)
..+|+|+|||+|.+|..+.... .+|+-.|+. .-+-... . .... ..++ .|+.+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~-----------------~~v~giD~s-----~~~l~~a--~-~~~~-~~~~i~~~~~- 90 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA-----------------GQVIALDFI-----ESVIKKN--E-SING-HYKNVKFMCA- 90 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC-----------------CEEEEEeCC-----HHHHHHH--H-HHhc-cCCceEEEEe-
Confidence 4589999999999998775211 245555543 2211110 0 0100 1112 23222
Q ss_pred CCCcc--cccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCce
Q 036835 130 PGSFY--ERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 130 p~SFy--~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
++. ..-+|++++|++++..++||+++ .++..+|+...+-|+|||+
T Consensus 91 --d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 91 --DVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKWLKVGGY 137 (475)
T ss_pred --cccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHhcCCCeE
Confidence 443 22368899999999999999754 1234488888889999999
Q ss_pred EEEEec
Q 036835 208 MFLTFI 213 (242)
Q Consensus 208 lvl~~~ 213 (242)
|++.-.
T Consensus 138 l~~~d~ 143 (475)
T PLN02336 138 IFFRES 143 (475)
T ss_pred EEEEec
Confidence 998643
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.00 E-value=2.5e-05 Score=60.07 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.2
Q ss_pred HHHHHHHhhcccCceEEEEec
Q 036835 193 AFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 193 ~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.+++.-.+.|+|||++++++.
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEec
Confidence 588888899999999999864
No 50
>PRK05785 hypothetical protein; Provisional
Probab=98.00 E-value=3.5e-05 Score=67.37 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=48.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|.++..+.+.. ..+|+--|+.. +.-.+-+ . + .-+ +-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S~-~Ml~~a~----------~-~--~~~---~~ 98 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYAE-NMLKMNL----------V-A--DDK---VV 98 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCCH-HHHHHHH----------h-c--cce---EE
Confidence 5799999999998887664221 14566666541 1111111 0 0 112 33
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCC
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPE 160 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~ 160 (242)
+++-..-||++|+|++++++++||+.+.+.
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCCHHH
Confidence 466555678999999999999999766443
No 51
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.97 E-value=9.8e-05 Score=61.51 Aligned_cols=110 Identities=19% Similarity=0.304 Sum_probs=64.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+... .|..+|+..|.-.+=.... +.........+ +..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~---------------~~~~~v~~vDi~~~a~~~a-------~~n~~~n~~~~--v~~~ 86 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKR---------------GPDAKVTAVDINPDALELA-------KRNAERNGLEN--VEVV 86 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHT---------------STCEEEEEEESBHHHHHHH-------HHHHHHTTCTT--EEEE
T ss_pred cCCeEEEecCChHHHHHHHHHh---------------CCCCEEEEEcCCHHHHHHH-------HHHHHhcCccc--cccc
Confidence 3578999999999988877521 2456788888762111111 11111122223 4455
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
..+.++.+- ++++|+|+|. |+-.. .... -..-+..|++.-.+-|+|||.|+
T Consensus 87 ~~d~~~~~~-~~~fD~Iv~N---------PP~~~-----------~~~~--------~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 87 QSDLFEALP-DGKFDLIVSN---------PPFHA-----------GGDD--------GLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ESSTTTTCC-TTCEEEEEE------------SBT-----------TSHC--------HHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccc-ccceeEEEEc---------cchhc-----------cccc--------chhhHHHHHHHHHHhccCCCEEE
Confidence 667777655 8999999992 32110 0010 11224457877788899999998
Q ss_pred EEe
Q 036835 210 LTF 212 (242)
Q Consensus 210 l~~ 212 (242)
+..
T Consensus 138 lv~ 140 (170)
T PF05175_consen 138 LVI 140 (170)
T ss_dssp EEE
T ss_pred EEe
Confidence 744
No 52
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.89 E-value=3.6e-05 Score=71.57 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=64.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.+.. + .|..+|+..|... ..+ ...+..+........ .++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~--------~-------~p~~~v~~vDis~---~Al----~~A~~nl~~n~l~~~---~~~ 251 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAR--------H-------SPKIRLTLSDVSA---AAL----ESSRATLAANGLEGE---VFA 251 (342)
T ss_pred CCeEEEeccCcCHHHHHHHH--------h-------CCCCEEEEEECCH---HHH----HHHHHHHHHcCCCCE---EEE
Confidence 35899999999988776542 1 1457788888752 111 111111111111111 233
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++.+.. .++++|+|+|.-.+||.-.. ...+...|++.-++-|+|||.|++
T Consensus 252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~----------------------------~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 252 SNVFSD--IKGRFDMIISNPPFHDGIQT----------------------------SLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cccccc--cCCCccEEEECCCccCCccc----------------------------cHHHHHHHHHHHHHhcCcCCEEEE
Confidence 455543 36789999999999872110 013455688888899999999988
Q ss_pred Ee
Q 036835 211 TF 212 (242)
Q Consensus 211 ~~ 212 (242)
..
T Consensus 302 Va 303 (342)
T PRK09489 302 VA 303 (342)
T ss_pred EE
Confidence 64
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.89 E-value=6.8e-05 Score=70.69 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=63.5
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCC-ceeeccC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGP-CFIAGMP 130 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~vp 130 (242)
.+|+|+|||+|..++.+. ++ .|..+|+.-|... ..+..-+..+....... .-+..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccCceEEEEE
Confidence 589999999998877654 21 1568899988862 11111111111111100 0122234
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++.+..+ ++.++|+|+|.--+|+...+.. . ...+|++.-.+-|+|||.|++
T Consensus 288 ~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~-----------------~-----------ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 288 NNALSGV-EPFRFNAVLCNPPFHQQHALTD-----------------N-----------VAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred ccccccC-CCCCEEEEEECcCcccCccCCH-----------------H-----------HHHHHHHHHHHhcccCCEEEE
Confidence 4555543 5678999999877776332211 1 112356666677899999999
Q ss_pred Ee
Q 036835 211 TF 212 (242)
Q Consensus 211 ~~ 212 (242)
..
T Consensus 339 V~ 340 (378)
T PRK15001 339 VA 340 (378)
T ss_pred EE
Confidence 84
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.87 E-value=9.2e-05 Score=63.89 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCccEEeeecCCCCcchHHHH------------HHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhh
Q 036835 49 PGCFNVADLGCSSGPNTFLVI------------SKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRI 116 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~------------~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l 116 (242)
+..-+++|+|||.|.+|..+. ...|+.-++++. ..|.+++..-|+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp------------------ 99 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVP------------------ 99 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TT------------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCC------------------
Confidence 457899999999999999875 223333333321 1233444444444
Q ss_pred hhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 036835 117 KKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLS 196 (242)
Q Consensus 117 ~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 196 (242)
. ..|++++|+++-+-.+++|+.. .|+..++.
T Consensus 100 --------------~-----~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~ 130 (201)
T PF05401_consen 100 --------------E-----FWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALD 130 (201)
T ss_dssp --------------T--------SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHH
T ss_pred --------------C-----CCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHH
Confidence 2 2588999999999999998652 35677888
Q ss_pred HHHhhcccCceEEEEec
Q 036835 197 LRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 197 ~Ra~EL~pGG~lvl~~~ 213 (242)
.-.+-|.|||.||+...
T Consensus 131 ~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 131 RLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHTEEEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEe
Confidence 88899999999999876
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.87 E-value=3.1e-05 Score=65.92 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=66.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+... .|..+++--|+-. +.-... ..........++. .+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~---------------~p~~~v~gvD~~~-~~l~~a------~~~~~~~~l~ni~--~i 71 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ---------------NPDKNFLGIEIHT-PIVLAA------NNKANKLGLKNLH--VL 71 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh---------------CCCCCEEEEEeeH-HHHHHH------HHHHHHhCCCCEE--EE
Confidence 3469999999999988866522 1446667666642 111110 1111111122332 24
Q ss_pred CCCcc---cccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 130 PGSFY---ERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 p~SFy---~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
-++.. ..++|.+++|.++..+..+|..+ ... |..+- ...||+.-++-|+|||
T Consensus 72 ~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~----~~r~~--------------------~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 72 CGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN----KRRIT--------------------QPHFLKEYANVLKKGG 126 (194)
T ss_pred ccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc----ccccC--------------------CHHHHHHHHHHhCCCC
Confidence 44553 34467789999999998888433 110 00000 1237888888899999
Q ss_pred eEEEEec
Q 036835 207 RMFLTFI 213 (242)
Q Consensus 207 ~lvl~~~ 213 (242)
.+++.+-
T Consensus 127 ~l~~~td 133 (194)
T TIGR00091 127 VIHFKTD 133 (194)
T ss_pred EEEEEeC
Confidence 9998763
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.80 E-value=0.00011 Score=61.24 Aligned_cols=125 Identities=12% Similarity=0.075 Sum_probs=67.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . + + +++..|+-. ++-..-+. .....+ +-+..+.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~--------~----~---~--~v~~vD~s~-~~~~~a~~------~~~~~~---~~~~~~~ 72 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKG--------K----G---K--CILTTDINP-FAVKELRE------NAKLNN---VGLDVVM 72 (179)
T ss_pred CCeEEEeCCChhHHHHHHHh--------c----C---C--EEEEEECCH-HHHHHHHH------HHHHcC---CceEEEE
Confidence 46899999999998776652 1 1 2 677777751 11111111 111111 1122344
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++++. +.+++|+++|....|.....+.. ++..++-.... ..-...+..||+.-.+-|+|||++++
T Consensus 73 ~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 73 TDLFKG--VRGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGG----------KDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred cccccc--cCCcccEEEECCCCCCCcchhcc--cchhhhhhhcC----------CchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 566553 34589999998877755432221 00000000000 00012245688888888999999999
Q ss_pred EecccC
Q 036835 211 TFIGRS 216 (242)
Q Consensus 211 ~~~g~~ 216 (242)
...+..
T Consensus 139 ~~~~~~ 144 (179)
T TIGR00537 139 IQSSLN 144 (179)
T ss_pred EEeccC
Confidence 876554
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.79 E-value=0.0002 Score=67.52 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=64.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+.. ..+|+--|+...-. ... ++... .. . +...
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~----------------g~~V~giDlS~~~l-~~A------~~~~~--~l-~--v~~~ 218 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY----------------GVSVVGVTISAEQQ-KLA------QERCA--GL-P--VEIR 218 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC----------------CCEEEEEeCCHHHH-HHH------HHHhc--cC-e--EEEE
Confidence 34699999999999887664211 24566667652110 000 01110 00 1 1122
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++ ..+ ++++|.++|...++|+.. +++..+++.-.+-|+|||+++
T Consensus 219 ~~D~-~~l--~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 219 LQDY-RDL--NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred ECch-hhc--CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 2343 333 578999999888877421 234447777888889999999
Q ss_pred EEecccCC
Q 036835 210 LTFIGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+..++.+.
T Consensus 265 l~~i~~~~ 272 (383)
T PRK11705 265 LHTIGSNK 272 (383)
T ss_pred EEEccCCC
Confidence 99988764
No 58
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.78 E-value=0.00019 Score=62.70 Aligned_cols=105 Identities=21% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+..-+|+|+|+|+|..+..+++ + .|..+++.=|||. +...... .-.+..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~-----v~~~~~~-----------~~rv~~ 147 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALAR--------A-------YPNLRATVFDLPE-----VIEQAKE-----------ADRVEF 147 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEE-HH-----HHCCHHH-----------TTTEEE
T ss_pred cCccEEEeccCcchHHHHHHHH--------H-------CCCCcceeeccHh-----hhhcccc-----------cccccc
Confidence 4567899999999988876652 2 2578899999992 1111111 122345
Q ss_pred cCCCcccccCCCCceeEEEecccee-ecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC--
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVH-WLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG-- 205 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG-- 205 (242)
+||+|+ .-+|. .|+++-.+.|| | ++ ++-..+|+.-++-|+||
T Consensus 148 ~~gd~f-~~~P~--~D~~~l~~vLh~~-~d-------------------------------~~~~~iL~~~~~al~pg~~ 192 (241)
T PF00891_consen 148 VPGDFF-DPLPV--ADVYLLRHVLHDW-SD-------------------------------EDCVKILRNAAAALKPGKD 192 (241)
T ss_dssp EES-TT-TCCSS--ESEEEEESSGGGS--H-------------------------------HHHHHHHHHHHHHSEECTT
T ss_pred ccccHH-hhhcc--ccceeeehhhhhc-ch-------------------------------HHHHHHHHHHHHHhCCCCC
Confidence 899999 66777 99999999997 6 21 34455999999999999
Q ss_pred ceEEEEecccCCCC
Q 036835 206 GRMFLTFIGRSIAD 219 (242)
Q Consensus 206 G~lvl~~~g~~~~~ 219 (242)
|++++.-.-.++..
T Consensus 193 g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 193 GRLLIIEMVLPDDR 206 (241)
T ss_dssp EEEEEEEEEECSSS
T ss_pred CeEEEEeeccCCCC
Confidence 99999998876654
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.74 E-value=0.00011 Score=62.29 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . .+..+|+.-|...+- -...+. ........+ +..+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~-~--------------~~~~~V~~iD~s~~~-~~~a~~------~~~~~~~~~--i~~i~ 98 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI-A--------------RPELKLTLLESNHKK-VAFLRE------VKAELGLNN--VEIVN 98 (181)
T ss_pred CCeEEEecCCCCccHHHHHH-H--------------CCCCeEEEEeCcHHH-HHHHHH------HHHHhCCCC--eEEEe
Confidence 57999999999999887641 1 023567777765321 111111 111111123 22344
Q ss_pred CCcccccCCCCceeEEEecc
Q 036835 131 GSFYERLFQSRSINFIHSSY 150 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~ 150 (242)
++.. .+.+.+++|+++|..
T Consensus 99 ~d~~-~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 99 GRAE-DFQHEEQFDVITSRA 117 (181)
T ss_pred cchh-hccccCCccEEEehh
Confidence 4653 345678999999843
No 60
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.73 E-value=0.00012 Score=61.45 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=24.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
...+|+|+|||+|..++.+.+.. |..+++.-|..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~---------------~~~~v~~vD~s 64 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF---------------PSLQVTAIERN 64 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC---------------CCCEEEEEECC
Confidence 45799999999999988775211 34667777774
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.70 E-value=0.00015 Score=61.98 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|..++.+.... |..+|+.-|... +.-...+. ........+ +..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~-~~l~~A~~------~~~~~~l~~--i~~ 99 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLG-KKIAFLRE------VAAELGLKN--VTV 99 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcH-HHHHHHHH------HHHHcCCCC--EEE
Confidence 346899999999999888775311 235677777652 11111111 111111122 333
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.++..+ +-+.+++|++++.. + .++..|++..++-|+|||++
T Consensus 100 ~~~d~~~-~~~~~~fDlV~~~~-~------------------------------------~~~~~~l~~~~~~LkpGG~l 141 (187)
T PRK00107 100 VHGRAEE-FGQEEKFDVVTSRA-V------------------------------------ASLSDLVELCLPLLKPGGRF 141 (187)
T ss_pred EeccHhh-CCCCCCccEEEEcc-c------------------------------------cCHHHHHHHHHHhcCCCeEE
Confidence 4445533 33367899999832 0 12334888889999999999
Q ss_pred EEEe
Q 036835 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
++..
T Consensus 142 v~~~ 145 (187)
T PRK00107 142 LALK 145 (187)
T ss_pred EEEe
Confidence 9874
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00018 Score=63.79 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=36.5
Q ss_pred cCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccC
Q 036835 137 LFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRS 216 (242)
Q Consensus 137 l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
+-+++|||+|.++-|+|| -|+.+|.+.-.+=|++.|-++....=++
T Consensus 95 ~g~e~SVDlI~~Aqa~HW----------------------------------Fdle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHW----------------------------------FDLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cCCCcceeeehhhhhHHh----------------------------------hchHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 337999999999999999 3566677777788888886666665554
Q ss_pred CC
Q 036835 217 IA 218 (242)
Q Consensus 217 ~~ 218 (242)
+.
T Consensus 141 d~ 142 (261)
T KOG3010|consen 141 DF 142 (261)
T ss_pred CC
Confidence 43
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.67 E-value=0.00016 Score=61.84 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=59.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+. ...++..|+...-... .+.........+ +..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~-------a~~~~~~~~~~~--~~~~ 98 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEENIEV-------AKLHAKKDPLLK--IEYR 98 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHH-------HHHHHHHcCCCc--eEEE
Confidence 4689999999999877655311 1236666764211100 011111111101 1112
Q ss_pred CCCcccccCC-CCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 130 PGSFYERLFQ-SRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 130 p~SFy~~l~p-~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
-+++-+...+ ++++|++++..++|+..+. ..+|+.-.+-|+|||.+
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDP---------------------------------QAFIRACAQLLKPGGIL 145 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCH---------------------------------HHHHHHHHHhcCCCcEE
Confidence 2233222222 4789999998888875331 12677777778999999
Q ss_pred EEEeccc
Q 036835 209 FLTFIGR 215 (242)
Q Consensus 209 vl~~~g~ 215 (242)
+++...+
T Consensus 146 ~i~~~~~ 152 (224)
T TIGR01983 146 FFSTINR 152 (224)
T ss_pred EEEecCC
Confidence 9887644
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.66 E-value=0.00013 Score=68.89 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=65.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+++|+|||+|..++.+... .|+..++--|+-..=...+-+. ....+..++.+. .
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~---------------~P~~~~iGIEI~~~~i~~a~~k-------a~~~gL~NV~~i--~ 178 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN---------------NPNKLFIGIEIHTPSIEQVLKQ-------IELLNLKNLLII--N 178 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh---------------CCCCCEEEEECCHHHHHHHHHH-------HHHcCCCcEEEE--E
Confidence 468999999999888766522 1456777777652111111111 111222354433 2
Q ss_pred CCc--ccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 131 GSF--YERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 ~SF--y~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++. .-..+|++++|.++..+...|..+ +. .++ -...||+.-++-|+|||.+
T Consensus 179 ~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH------RRl--------------------v~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 179 YDARLLLELLPSNSVEKIFVHFPVPWDKK-PH------RRV--------------------ISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred CCHHHhhhhCCCCceeEEEEeCCCCcccc-ch------hhc--------------------cHHHHHHHHHHHcCCCcEE
Confidence 333 234689999999999887778211 00 000 1234788888888999999
Q ss_pred EEEe
Q 036835 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
.+.+
T Consensus 232 ~l~T 235 (390)
T PRK14121 232 ELRT 235 (390)
T ss_pred EEEE
Confidence 9854
No 65
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.63 E-value=0.00036 Score=60.57 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.... |..+++..|.-.. .-..-+ .........+ +..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~~-~~~~a~------~~~~~~~~~~--~~~~ 142 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISPE-ALAVAR------KNAARLGLDN--VTFL 142 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCHH-HHHHHH------HHHHHcCCCe--EEEE
Confidence 34699999999998888775221 2457777776421 111110 1111111112 2234
Q ss_pred CCCcccccCCCCceeEEEeccceeeccc---CCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSK---VPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~---~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+++.+ .++++++|++++.--.+..+. .+..+.. -.+..+.. -......++..|++.-.+.|+|||
T Consensus 143 ~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~---------~e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 143 QSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF---------HEPRLALF-GGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred ECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh---------cCCHHHHc-CCCcHHHHHHHHHHHHHHhcccCC
Confidence 556655 457889999998432221111 1110000 00000000 011234567779999999999999
Q ss_pred eEEEEe
Q 036835 207 RMFLTF 212 (242)
Q Consensus 207 ~lvl~~ 212 (242)
++++..
T Consensus 212 ~~~~~~ 217 (251)
T TIGR03534 212 WLLLEI 217 (251)
T ss_pred EEEEEE
Confidence 999854
No 66
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00079 Score=61.15 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 183 FLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 183 y~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
|..-..+-|..|++.-.+-|+|||+|++-.++...
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 33334456777999999999999999999988766
No 67
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.58 E-value=0.00033 Score=50.21 Aligned_cols=102 Identities=24% Similarity=0.240 Sum_probs=59.3
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCC
Q 036835 53 NVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~S 132 (242)
+|+|+|||.|.++..+.. .+..+++..|+..+-....-+... .....++. .+.++
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~ 55 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAA-------ALLADNVE--VLKGD 55 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHh-------cccccceE--EEEcC
Confidence 589999999998776652 123677777875422222111000 00011111 12234
Q ss_pred cccccC-CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 133 FYERLF-QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 133 Fy~~l~-p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+.+... +.+++|+++....++++ + .+...+++.-.+-|+|||.++++
T Consensus 56 ~~~~~~~~~~~~d~i~~~~~~~~~---~-----------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 56 AEELPPEADESFDVIISDPPLHHL---V-----------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhhccccCCceEEEEEccceeeh---h-----------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 443333 67789999998888875 1 12333666666667999999986
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.57 E-value=0.00073 Score=61.11 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=64.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCC-CCceeecc
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKF-GPCFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~v 129 (242)
..+|+|+|||+|..++.+.... |..+++-.|... +.-.+-+ ........ .++ ..+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~---------------~~~~v~avDis~-~al~~A~------~n~~~~~~~~~i--~~~ 177 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF---------------PEAEVDAVDISP-DALAVAE------INIERHGLEDRV--TLI 177 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCCcE--EEE
Confidence 4689999999999888776321 346778777752 1111111 11111111 121 224
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHH----HHHH--HHHHHHHHHHHHHHHhhcc
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVC----QAFL--EQFQRDFSAFLSLRSEEIV 203 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~----~ay~--~Q~~~D~~~FL~~Ra~EL~ 203 (242)
.+++++.+ |++++|+++|. |+-+..+. + ...++.+. .|.. +......+.|++.-.+-|+
T Consensus 178 ~~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~--~---~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 178 QSDLFAAL-PGRKYDLIVSN---------PPYVDAED--M---ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred ECchhhcc-CCCCccEEEEC---------CCCCCccc--h---hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 45665543 66789999993 33222100 0 00011110 0000 0112345668888888899
Q ss_pred cCceEEEEe
Q 036835 204 SGGRMFLTF 212 (242)
Q Consensus 204 pGG~lvl~~ 212 (242)
|||++++-+
T Consensus 243 ~gG~l~~e~ 251 (284)
T TIGR03533 243 ENGVLVVEV 251 (284)
T ss_pred CCCEEEEEE
Confidence 999998754
No 69
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.56 E-value=4e-05 Score=67.01 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhh--cCCCCcee
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKK--DKFGPCFI 126 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~--~~~~~~f~ 126 (242)
+...+.+|.|||-|+-|-.++..+- .++ ||. |.+.-|-.-. +..+.. .+...+|.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--------------~~V-----DlV--Ep~~~Fl~~a--~~~l~~~~~~v~~~~~ 110 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--------------DEV-----DLV--EPVEKFLEQA--KEYLGKDNPRVGEFYC 110 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---------------SEE-----EEE--ES-HHHHHHH--HHHTCCGGCCEEEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhc--------------CEe-----EEe--ccCHHHHHHH--HHHhcccCCCcceEEe
Confidence 3589999999999998875541110 112 222 4444343222 111211 12234555
Q ss_pred eccCCCcccccCCC-CceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 127 AGMPGSFYERLFQS-RSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 127 ~~vp~SFy~~l~p~-~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
.|. +..-|+ +..|+||.=|++..|++ .|+..||+++.+-|+||
T Consensus 111 ~gL-----Q~f~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 111 VGL-----QDFTPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKRCKQALKPN 154 (218)
T ss_dssp S-G-----GG----TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHHHHHHEEEE
T ss_pred cCH-----hhccCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHHHHHhCcCC
Confidence 552 333465 79999999777777665 68999999999999999
Q ss_pred ceEEEEe
Q 036835 206 GRMFLTF 212 (242)
Q Consensus 206 G~lvl~~ 212 (242)
|.+++=-
T Consensus 155 G~IvvKE 161 (218)
T PF05891_consen 155 GVIVVKE 161 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9999853
No 70
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00091 Score=59.48 Aligned_cols=152 Identities=12% Similarity=0.224 Sum_probs=83.8
Q ss_pred hHHHhhHHHHHHHHH--------HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCC
Q 036835 17 SYAKNSDIQRTVISK--------AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLP 88 (242)
Q Consensus 17 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~ 88 (242)
-|.+++..+..+.-. -..+|.+...++..-......+|+++|||-|...+-+++.. +.+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~ 96 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNN 96 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCC
Confidence 355555555554433 45677777777654322223499999999998877666222 334
Q ss_pred ceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcc
Q 036835 89 EFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRN 168 (242)
Q Consensus 89 ~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~ 168 (242)
.+.+|..|-..|- -.+.+.-..... ..-..|+.-.-.+=...-++++|+|++.-.+. ||-+|+.
T Consensus 97 ~l~v~acDfsp~A-i~~vk~~~~~~e-----~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe------- 160 (264)
T KOG2361|consen 97 RLKVYACDFSPRA-IELVKKSSGYDE-----SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE------- 160 (264)
T ss_pred CeEEEEcCCChHH-HHHHHhccccch-----hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH-------
Confidence 5999999886422 222222111100 00012222222222455667788888776433 3444441
Q ss_pred eEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCCC
Q 036835 169 IYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 169 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
-|..-+....+=|+|||.|++-=.|+.+.
T Consensus 161 ---------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 161 ---------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred ---------------------HHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 12223334444459999999998888654
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.49 E-value=0.00038 Score=60.19 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 139 QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 139 p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+++.+|+++++..+++..+. ..+|+...+-|+|||+++++.+++
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDP---------------------------------ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred cCCCccEEEEhhHhhccCCH---------------------------------HHHHHHHHHHcCCCcEEEEEecCC
Confidence 56799999998887774321 126777777789999999987754
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.45 E-value=0.0015 Score=56.03 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=43.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..|..+.+.+ . +.-+|+--|.-. +.-...+ +.+...+..+ -+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~-~-------------~~g~V~~iD~~~-~~~~~a~------~~l~~~~~~~-~v~~~~ 130 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI-E-------------RRGKVYTVEIVK-ELAIYAA------QNIERLGYWG-VVEVYH 130 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC-cEEEEE
Confidence 4799999999999987665322 0 123566666542 1111111 1111111111 112233
Q ss_pred CCcccccCCCCceeEEEeccceee
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHW 154 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhW 154 (242)
+++.+-+.+.+++|.+++..++++
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred CCcccCCccCCCccEEEEccCcch
Confidence 466444445578999999877654
No 73
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.42 E-value=0.00021 Score=64.15 Aligned_cols=29 Identities=38% Similarity=0.599 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 189 RDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|...||++..+-|+|||+|+++++-|.-
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 35556999999999999999999998754
No 74
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.39 E-value=0.00076 Score=60.17 Aligned_cols=127 Identities=12% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+..-+|+|+|||+|..++.+.+.. +..++..-++-.-......+++.. ..+ .-.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~---------------~~a~I~~VEiq~~~a~~A~~nv~l--n~l------~~ri~v 99 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRT---------------EKAKIVGVEIQEEAAEMAQRNVAL--NPL------EERIQV 99 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccC---------------CCCcEEEEEeCHHHHHHHHHHHHh--Ccc------hhceeE
Confidence 348999999999999999887442 112333333321111111111110 000 011111
Q ss_pred cCCCc--ccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 129 MPGSF--YERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vp~SF--y~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
+-.++ +.+-.+..++|+|+| .|+-...++. ..+.+..+..+.+..-++..+++.-++=|+|||
T Consensus 100 ~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 100 IEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ehhhHHHhhhcccccccCEEEe---------CCCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 22233 133334448899999 5664443221 224455666677788889999999999999999
Q ss_pred eEEEEec
Q 036835 207 RMFLTFI 213 (242)
Q Consensus 207 ~lvl~~~ 213 (242)
.+.+...
T Consensus 165 ~l~~V~r 171 (248)
T COG4123 165 RLAFVHR 171 (248)
T ss_pred EEEEEec
Confidence 9998654
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00045 Score=63.08 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=63.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||-|...+.+.+. .|..++.+.|.- + +.+...+.-+..+...+. ..+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDvn---~----~Av~~ar~Nl~~N~~~~~--~v~~ 214 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDVN---A----RAVESARKNLAANGVENT--EVWA 214 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHh---------------CCCCeEEEEecC---H----HHHHHHHHhHHHcCCCcc--EEEE
Confidence 349999999999988877522 257888888875 2 222222222322222331 1122
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.+-|+.+.. ++|+|+| .|+-.. |. ..+..+ . .++++.=++.|++||.|.+
T Consensus 215 s~~~~~v~~--kfd~Iis---------NPPfh~---G~--------~v~~~~-~-------~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 215 SNLYEPVEG--KFDLIIS---------NPPFHA---GK--------AVVHSL-A-------QEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ecccccccc--cccEEEe---------CCCccC---Cc--------chhHHH-H-------HHHHHHHHHhhccCCEEEE
Confidence 355666666 8999999 344211 11 011100 0 1367777788899999998
Q ss_pred Eec
Q 036835 211 TFI 213 (242)
Q Consensus 211 ~~~ 213 (242)
..-
T Consensus 265 Van 267 (300)
T COG2813 265 VAN 267 (300)
T ss_pred EEc
Confidence 765
No 76
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.38 E-value=0.00027 Score=62.60 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=63.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
-.+|+|+|||-|..|..+. +. | ..|+-.|+-. . .+. ..+++-.+ ..+.+--.+
T Consensus 60 g~~vLDvGCGgG~Lse~mA--------r~----G-----a~VtgiD~se-~------~I~--~Ak~ha~e-~gv~i~y~~ 112 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA--------RL----G-----ASVTGIDASE-K------PIE--VAKLHALE-SGVNIDYRQ 112 (243)
T ss_pred CCeEEEecCCccHhhHHHH--------HC----C-----CeeEEecCCh-H------HHH--HHHHhhhh-ccccccchh
Confidence 5899999999997766553 11 2 7788888862 0 000 01111000 011100011
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
..--+-....+++|+|.| ++=|.++|.+ ..|++.+++-++|||.|++
T Consensus 113 ~~~edl~~~~~~FDvV~c---mEVlEHv~dp------------------------------~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 113 ATVEDLASAGGQFDVVTC---MEVLEHVPDP------------------------------ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred hhHHHHHhcCCCccEEEE---hhHHHccCCH------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 122133334489999998 5555556652 1199999999999999999
Q ss_pred EecccCC
Q 036835 211 TFIGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
+++-|.-
T Consensus 160 STinrt~ 166 (243)
T COG2227 160 STINRTL 166 (243)
T ss_pred eccccCH
Confidence 9998643
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.37 E-value=0.0022 Score=54.97 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.5
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
...+|+|+|||+|..|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCEEEEECCCccHHHHHHH
Confidence 45899999999999987443
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.36 E-value=0.0012 Score=56.84 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=42.3
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+.... .++.+|+-.|.-. +.-..- +..+......++ ..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~-~~~~~A------~~~~~~~g~~~v--~~~ 133 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP-ELAEKA------ERRLRKLGLDNV--IVI 133 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHH------HHHHHHCCCCCe--EEE
Confidence 45799999999999998665322 0235666666641 111111 111111111221 223
Q ss_pred CCCcccccCCCCceeEEEeccc
Q 036835 130 PGSFYERLFQSRSINFIHSSYS 151 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~a 151 (242)
.++..+-+.+.+.+|++++..+
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCC
Confidence 4466554445568999987544
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.33 E-value=0.0044 Score=53.12 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.7
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
...+|+|+|||+|..+..+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 45799999999999887664
No 80
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.32 E-value=0.0028 Score=58.88 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=93.7
Q ss_pred ccc-ccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhc
Q 036835 6 VPC-MNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVN 84 (242)
Q Consensus 6 ~~~-m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~ 84 (242)
+.. |.||-+..+|.-+-.+|+..- ....++.+.+.+.+.. +...-..+|.|-|.|..+-.+++..
T Consensus 134 ~~G~~l~~~~~~~~~~~~~~~~sm~-~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~f------------ 199 (342)
T KOG3178|consen 134 AHGMMLGGYGGADERFSKDFNGSMS-FLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKY------------ 199 (342)
T ss_pred ccchhhhhhcccccccHHHHHHHHH-HHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhC------------
Confidence 344 567767666665566664433 3333333333334333 4457899999999999888776422
Q ss_pred CCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccC
Q 036835 85 KKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLET 164 (242)
Q Consensus 85 ~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~ 164 (242)
|.+..+==||| .+...-+... +. +.-+.|+++.. .|.+- +||--|.||-+.+
T Consensus 200 ---p~ik~infdlp-----~v~~~a~~~~--------~g--V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD------- 251 (342)
T KOG3178|consen 200 ---PHIKGINFDLP-----FVLAAAPYLA--------PG--VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD------- 251 (342)
T ss_pred ---CCCceeecCHH-----HHHhhhhhhc--------CC--cceeccccccc-CCCcC--eEEEEeecccCCh-------
Confidence 44666655555 1222222110 01 33477899988 88875 9999888883222
Q ss_pred CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 165 NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 165 nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|+..||+++.+-|.|||.+++.-.-.++
T Consensus 252 ------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 252 ------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 68888999999999999999998874443
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.31 E-value=0.002 Score=55.71 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=43.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+...+ . +.-+|+--|.-. ++-...+ ..+......+ +..+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~-~-------------~~~~V~~vE~~~-~~~~~a~------~~l~~~g~~~--v~~~ 132 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV-G-------------KSGKVVTIERIP-ELAEKAK------KTLKKLGYDN--VEVI 132 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC--eEEE
Confidence 35799999999999997665322 1 123455444431 2222222 1111111122 2234
Q ss_pred CCCcccccCCCCceeEEEeccce
Q 036835 130 PGSFYERLFQSRSINFIHSSYSV 152 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~al 152 (242)
-++...-..+.+.+|+|++..++
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCCc
Confidence 45665555567889999886654
No 82
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.31 E-value=0.0063 Score=52.25 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=29.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 18 YAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
|+.-..++..+..-..++.++.+..+.. ......+|+|+|||+|..+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la 74 (219)
T TIGR02021 24 GDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELA 74 (219)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHH
Confidence 4444444444433333444444433321 12346899999999998877664
No 83
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.24 E-value=0.0029 Score=54.97 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=62.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchh--Hhhhhh-cCCCCcee
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDF--YKRIKK-DKFGPCFI 126 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~--~~~l~~-~~~~~~f~ 126 (242)
...+|+|+|||.|.|++.+.+ + -.+|+--|+...=-..+++...-. ...+.. ......-+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~--------~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE--------Q---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 347999999999999998862 1 155666665432111111100000 000000 00000111
Q ss_pred eccCCCcccccC-CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 127 AGMPGSFYERLF-QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 127 ~~vp~SFy~~l~-p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
..+-++|++.-. +...+|+++-..++| .+|+ .+..++++.-.+-|+||
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~---~l~~----------------------------~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALI---ALPE----------------------------EMRQRYAAHLLALLPPG 145 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhc---cCCH----------------------------HHHHHHHHHHHHHcCCC
Confidence 123335544221 134688888877776 3443 23344677777888999
Q ss_pred ceEEEEecccC
Q 036835 206 GRMFLTFIGRS 216 (242)
Q Consensus 206 G~lvl~~~g~~ 216 (242)
|++++.++...
T Consensus 146 G~~ll~~~~~~ 156 (213)
T TIGR03840 146 ARQLLITLDYD 156 (213)
T ss_pred CeEEEEEEEcC
Confidence 98777766553
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.23 E-value=0.003 Score=57.87 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=41.4
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~ 131 (242)
.+|+|+|||+|..++.+.... |..+|+..|+-. +.-.+.+. .....+..+ -+..+-+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~---------------p~~~V~avDis~-~al~~A~~------n~~~~~l~~-~i~~~~~ 191 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF---------------PDAEVDAVDISP-DALAVAEI------NIERHGLED-RVTLIES 191 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHH------HHHHhCCCC-cEEEEEC
Confidence 689999999999887765221 346788888752 11111111 111111111 1223445
Q ss_pred CcccccCCCCceeEEEec
Q 036835 132 SFYERLFQSRSINFIHSS 149 (242)
Q Consensus 132 SFy~~l~p~~Svdl~~Ss 149 (242)
++.+.+ |++++|+++|.
T Consensus 192 D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 192 DLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred chhhhC-CCCCccEEEEC
Confidence 765543 66789999994
No 85
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.22 E-value=0.0016 Score=58.72 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 189 RDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+++..|++.-++-|+|||++++-.++..+
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 35566999999999999999998887654
No 86
>PRK04266 fibrillarin; Provisional
Probab=97.22 E-value=0.0023 Score=56.21 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.9
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
...+|+|+|||+|..|+.+.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la 91 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS 91 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH
Confidence 34799999999999987765
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.22 E-value=0.0019 Score=54.36 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcccCceEEEEec
Q 036835 190 DFSAFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
+...+|+.-.+-|+|||++++..+
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEc
Confidence 456688888889999999999754
No 88
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.21 E-value=0.00059 Score=66.04 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=60.0
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhh---cCchhHhhhhhcCCCCce
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFE---SLPDFYKRIKKDKFGPCF 125 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~---~l~~~~~~l~~~~~~~~f 125 (242)
...-+++|+|||+|.....+++.=| ..+.+-.+|--. +.-.|. .+|. .+
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V--------------~t~s~a~~d~~~--~qvqfaleRGvpa------------~~ 167 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNV--------------TTMSFAPNDEHE--AQVQFALERGVPA------------MI 167 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCc--------------eEEEcccccCCc--hhhhhhhhcCcch------------hh
Confidence 4567889999999988876652111 123333333321 111111 1221 11
Q ss_pred eeccCCCcccccCCCCceeEEEecccee-ecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036835 126 IAGMPGSFYERLFQSRSINFIHSSYSVH-WLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 126 ~~~vp~SFy~~l~p~~Svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 204 (242)
++-|+- .-.||++++|++|++-|+- |.+.- | +|. -|+.+.| +|
T Consensus 168 --~~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~~--------g-~~l-----------------~evdRvL-------Rp 211 (506)
T PF03141_consen 168 --GVLGSQ-RLPFPSNAFDMVHCSRCLIPWHPND--------G-FLL-----------------FEVDRVL-------RP 211 (506)
T ss_pred --hhhccc-cccCCccchhhhhcccccccchhcc--------c-cee-----------------ehhhhhh-------cc
Confidence 233343 6667999999999999875 74441 2 222 2333455 99
Q ss_pred CceEEEEecccC
Q 036835 205 GGRMFLTFIGRS 216 (242)
Q Consensus 205 GG~lvl~~~g~~ 216 (242)
||+++++..-..
T Consensus 212 GGyfv~S~ppv~ 223 (506)
T PF03141_consen 212 GGYFVLSGPPVY 223 (506)
T ss_pred CceEEecCCccc
Confidence 999999877554
No 89
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.19 E-value=0.002 Score=61.56 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+... .|..+++..|+.. +.-.+-+ ....... .-+..+-
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~---------------~p~a~VtAVDiS~-~ALe~Ar------eNa~~~g---~rV~fi~ 306 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALE---------------RPDAFVRASDISP-PALETAR------KNAADLG---ARVEFAH 306 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHH------HHHHHcC---CcEEEEE
Confidence 358999999999998866521 1346777777741 1111111 1111111 1223345
Q ss_pred CCcccccCC-CCceeEEEeccceeecccCCCcccCCCcceEE--cCCCChHHHHHHH--HHHHHHHHHHHHHHHhhcccC
Q 036835 131 GSFYERLFQ-SRSINFIHSSYSVHWLSKVPENLETNKRNIYI--TKSSPPSVCQAFL--EQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 ~SFy~~l~p-~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~--~~~s~~~v~~ay~--~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
+++.+..+| .+++|+++|. |+-+...+....- .+-.|. .|.. +-....++++++.-.+-|+||
T Consensus 307 gDl~e~~l~~~~~FDLIVSN---------PPYI~~~e~~l~~~~v~~EP~---~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 307 GSWFDTDMPSEGKWDIIVSN---------PPYIENGDKHLLQGDLRFEPQ---IALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred cchhccccccCCCccEEEEC---------CCCCCcchhhhcchhhhcCHH---HHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 677665554 4689999993 4332211100000 000010 1111 011233566887777889999
Q ss_pred ceEEE
Q 036835 206 GRMFL 210 (242)
Q Consensus 206 G~lvl 210 (242)
|++++
T Consensus 375 G~lil 379 (423)
T PRK14966 375 GFLLL 379 (423)
T ss_pred cEEEE
Confidence 99876
No 90
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.19 E-value=0.004 Score=54.09 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCcc-EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc
Q 036835 30 SKAWPFLEETIKDMFSSSFPGCF-NVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES 108 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~-~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~ 108 (242)
++-+.-|.+.++++.. ..- +|+|+|||||--+..+.+.+ |.+++.=+|...+-+.++-.-
T Consensus 8 eRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~ 68 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAW 68 (204)
T ss_pred hhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHH
Confidence 3334444445554432 222 69999999997776665333 678899999987666565443
Q ss_pred CchhHhhhhhcCCCCceeec-cCCCccc--ccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHH
Q 036835 109 LPDFYKRIKKDKFGPCFIAG-MPGSFYE--RLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLE 185 (242)
Q Consensus 109 l~~~~~~l~~~~~~~~f~~~-vp~SFy~--~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~ 185 (242)
+... .+.+ ...++.+-. -+..=.. -.++.+++|.+++.+.+|-.+- +.+
T Consensus 69 ~~~~--~~~N-v~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~~~------ 120 (204)
T PF06080_consen 69 IAEA--GLPN-VRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPW-------------------SAV------ 120 (204)
T ss_pred HHhc--CCcc-cCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCH-------------------HHH------
Confidence 3221 1111 111222211 1100001 1126779999999999997432 111
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 186 QFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 186 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
..+++.-++-|++||.|++--+=..+
T Consensus 121 ------~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 121 ------EGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred ------HHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 22677778899999999886654433
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=97.17 E-value=0.0038 Score=57.11 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=60.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.+-+|+|+|||.|+.|..++..- -.|.-++.--|.-. +-+.+-+.+..-...+.+ .=.|..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~-------------~~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL~~---rV~F~~~- 184 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH-------------HLPTTSFHNFDIDP-SANDVARRLVSSDPDLSK---RMFFHTA- 184 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh-------------cCCCCEEEEEeCCH-HHHHHHHHHhhhccCccC---CcEEEEC-
Confidence 56899999999999877655211 11334555555542 223222222110011110 1233333
Q ss_pred CCCcccccC-CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 130 PGSFYERLF-QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 130 p~SFy~~l~-p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+-.+ +. +.+.+|++++. ++|-+++.+. ...|+.-++-|+|||.+
T Consensus 185 --Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k-------------------------------~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 185 --DVMD-VTESLKEYDVVFLA-ALVGMDKEEK-------------------------------VKVIEHLGKHMAPGALL 229 (296)
T ss_pred --chhh-cccccCCcCEEEEe-cccccccccH-------------------------------HHHHHHHHHhcCCCcEE
Confidence 2212 23 24689999999 6665443221 12677778889999999
Q ss_pred EEEe
Q 036835 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
++..
T Consensus 230 vlr~ 233 (296)
T PLN03075 230 MLRS 233 (296)
T ss_pred EEec
Confidence 9987
No 92
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.13 E-value=0.00099 Score=58.15 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC-CchHHHhhcCchhHhhhhhcCCCCcee
Q 036835 48 FPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPG-NDFNSIFESLPDFYKRIKKDKFGPCFI 126 (242)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~-NDFn~lf~~l~~~~~~l~~~~~~~~f~ 126 (242)
.|+..+|||+|||.+..+..+ . ....|+-=||.. || +|
T Consensus 70 ~~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n~-----------------------~V 108 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPNP-----------------------RV 108 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SST-----------------------TE
T ss_pred cCCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCCC-----------------------CE
Confidence 356789999999999876221 1 125566667752 11 11
Q ss_pred eccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 127 AGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 127 ~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+ -+.-.-..+++|+|+++-+-||+= .||..||+--.+=|+|||
T Consensus 109 ta--cdia~vPL~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~RvLK~~G 152 (219)
T PF05148_consen 109 TA--CDIANVPLEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRVLKPGG 152 (219)
T ss_dssp EE--S-TTS-S--TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHHEEEEE
T ss_pred EE--ecCccCcCCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHheeccCc
Confidence 11 233334458999999998777653 367779988889999999
Q ss_pred eEEEEecccC
Q 036835 207 RMFLTFIGRS 216 (242)
Q Consensus 207 ~lvl~~~g~~ 216 (242)
.|.+......
T Consensus 153 ~L~IAEV~SR 162 (219)
T PF05148_consen 153 ILKIAEVKSR 162 (219)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEEEeccc
Confidence 9999887554
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.12 E-value=0.0035 Score=61.20 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=64.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.... |..+++.-|+.. +.-.+.+.- ........ .+..+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~~N------~~~~~l~~-~v~~~~ 195 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAKSN------AIKYEVTD-RIQIIH 195 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHHHH------HHHcCCcc-ceeeee
Confidence 4689999999999888665322 346788888852 222222211 11011000 122345
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHH-HHHHHHHHHHHHHHHhhcccCceEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFL-EQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~-~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+++++. ++.+++|+++|.--....+..+....+ + ..-.| ..+-+. +.....++.+++.-.+-|+|||+++
T Consensus 196 ~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~----v--~~~EP--~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 196 SNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE----T--INYEP--SIALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred cchhhh-CcCCCccEEEECCCCCCchhhhhcCch----h--hccCc--HHHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 576554 356789999994211111111100000 0 00000 000010 1122345568888888899999998
Q ss_pred EE
Q 036835 210 LT 211 (242)
Q Consensus 210 l~ 211 (242)
+-
T Consensus 267 lE 268 (506)
T PRK01544 267 LE 268 (506)
T ss_pred EE
Confidence 74
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.11 E-value=0.0048 Score=55.54 Aligned_cols=127 Identities=15% Similarity=0.272 Sum_probs=63.0
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~ 131 (242)
.+|+|+|||+|..++.+.... |..+|+..|.-. +--.+.+ .........+ -+..+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~-~al~~a~------~n~~~~~~~~-~v~~~~~ 172 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISP-DALAVAE------ENAEKNQLEH-RVEFIQS 172 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEEC
Confidence 689999999998887765221 346788888752 1111111 0011111111 1223445
Q ss_pred CcccccCCCCceeEEEeccceeecccCCCcccCCCc-ce-EEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 132 SFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKR-NI-YITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 132 SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg-~i-~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
++++. ++.+++|+++|. |+-+..+.- .. -+..-.|..+... -.-...+.+.+++.-.+-|+|||+|+
T Consensus 173 d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 173 NLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVG-GDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred chhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcC-CCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 66654 355589999993 222211000 00 0000001000000 00123456678888888899999998
Q ss_pred EEe
Q 036835 210 LTF 212 (242)
Q Consensus 210 l~~ 212 (242)
+-.
T Consensus 242 ~e~ 244 (284)
T TIGR00536 242 CEI 244 (284)
T ss_pred EEE
Confidence 754
No 95
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.11 E-value=0.0009 Score=56.61 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.8
Q ss_pred CCCCceeEEEeccceeeccc
Q 036835 138 FQSRSINFIHSSYSVHWLSK 157 (242)
Q Consensus 138 ~p~~Svdl~~Ss~alhWLs~ 157 (242)
++++++|+++++.++||+.+
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 57889999999999999865
No 96
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.10 E-value=0.0028 Score=60.40 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=65.3
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|.-|+.+.+.. +...|+-.|+-.. .-... +........... .+.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~-~l~~~------~~n~~~~g~~~~---~~~ 299 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQ-RLERV------RENLQRLGLKAT---VIV 299 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHH-HHHHH------HHHHHHcCCCeE---EEE
Confidence 4689999999999998776322 1256777777531 11111 111111111111 223
Q ss_pred CCccc--ccCCCCceeEEEe---ccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 131 GSFYE--RLFQSRSINFIHS---SYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 ~SFy~--~l~p~~Svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
++..+ ..++++++|.+++ ++...-+.+-|.. -|. . .++- ...+......+|..-.+-|+||
T Consensus 300 ~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~-------~~~-~--~~~~----l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 300 GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDI-------KWL-R--RPED----IAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred cCcccchhhcccCCCCEEEECCCCCcccccccCccc-------ccc-C--CHHH----HHHHHHHHHHHHHHHHHhcCCC
Confidence 34422 2245678999985 1111112222221 011 0 1111 1223344556888888999999
Q ss_pred ceEEEEeccc
Q 036835 206 GRMFLTFIGR 215 (242)
Q Consensus 206 G~lvl~~~g~ 215 (242)
|+|+.++..-
T Consensus 366 G~lvystcs~ 375 (427)
T PRK10901 366 GTLLYATCSI 375 (427)
T ss_pred CEEEEEeCCC
Confidence 9999988644
No 97
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.08 E-value=0.009 Score=52.10 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
..|.|.+.+..+. .+...+|+|+|||.|.|++.+.
T Consensus 22 p~~~L~~~~~~~~---~~~~~rvL~~gCG~G~da~~LA 56 (218)
T PRK13255 22 VNPLLQKYWPALA---LPAGSRVLVPLCGKSLDMLWLA 56 (218)
T ss_pred CCHHHHHHHHhhC---CCCCCeEEEeCCCChHhHHHHH
Confidence 4556666554332 1334799999999999999886
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.07 E-value=0.0021 Score=56.82 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcccCceEEEEe
Q 036835 189 RDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
.++..|++.-.+-|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 456678888888899999999843
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.06 E-value=0.0051 Score=58.62 Aligned_cols=130 Identities=13% Similarity=0.147 Sum_probs=70.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|.-|..+.+.+ +.-+|+-.|.-.+=...+-+. ++..+.. +-+..+.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n-------~~r~g~~-~~v~~~~ 295 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYEN-------LKRLGLT-IKAETKD 295 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHH-------HHHcCCC-eEEEEec
Confidence 4799999999999999776322 135677777753211111111 1111111 2222233
Q ss_pred CCccccc--CCCCceeEEEe---ccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 131 GSFYERL--FQSRSINFIHS---SYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 ~SFy~~l--~p~~Svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
++...-. .+.+++|.++. +++..-+.+.|+.. |. .++..+. +..+.-..+|..=++-|+||
T Consensus 296 ~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~-------~~--~~~~~~~-----~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIK-------WL--RKPRDIA-----ELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cccccccccccccccCEEEEcCCCCCCcccccCcchh-------hc--CCHHHHH-----HHHHHHHHHHHHHHHhcCCC
Confidence 3332212 25678999986 33444444444421 10 1122221 22223345787778889999
Q ss_pred ceEEEEecccCC
Q 036835 206 GRMFLTFIGRSI 217 (242)
Q Consensus 206 G~lvl~~~g~~~ 217 (242)
|+|+.++..-..
T Consensus 362 G~lvystcs~~~ 373 (426)
T TIGR00563 362 GTLVYATCSVLP 373 (426)
T ss_pred cEEEEEeCCCCh
Confidence 999999887643
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=97.02 E-value=0.0036 Score=56.81 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=68.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. + . +..+|+..|+-. ++-.+.+.. + ++ +..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~--------r------~-~~~~V~gVDisp-~al~~Ar~n------~-----~~--v~~v~ 115 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH--------R------C-KPEKIVCVELNP-EFARIGKRL------L-----PE--AEWIT 115 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------h------C-CCCEEEEEECCH-HHHHHHHHh------C-----cC--CEEEE
Confidence 46899999999987765541 1 0 126778888753 233222211 1 11 11244
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHH----HHH--HHHHHHHHHHhhccc
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQ----FQR--DFSAFLSLRSEEIVS 204 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q----~~~--D~~~FL~~Ra~EL~p 204 (242)
+++.+ +.+..++|+|+|.-..+++..... .+.|+.+ ..+ .+..||+..+.=|+|
T Consensus 116 ~D~~e-~~~~~kFDlIIsNPPF~~l~~~d~-------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 116 SDVFE-FESNEKFDVVISNPPFGKINTTDT-------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred Cchhh-hcccCCCcEEEEcCCccccCchhh-------------------hhhhhhccCccccccccHHHHHhhhHheecC
Confidence 56643 335678999999877777532111 0111110 001 146788888999999
Q ss_pred CceEEEEecccCC
Q 036835 205 GGRMFLTFIGRSI 217 (242)
Q Consensus 205 GG~lvl~~~g~~~ 217 (242)
+|...+..-|+.-
T Consensus 176 ~G~~~~~yss~~~ 188 (279)
T PHA03411 176 TGSAGFAYSGRPY 188 (279)
T ss_pred CceEEEEEecccc
Confidence 9988888666543
No 101
>PTZ00146 fibrillarin; Provisional
Probab=97.01 E-value=0.011 Score=54.02 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=17.0
Q ss_pred ccEEeeecCCCCcchHHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~ 70 (242)
-.+|+|+|||+|..|..+..
T Consensus 133 G~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHH
Confidence 46999999999998887763
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.99 E-value=0.0022 Score=57.93 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHhhcccCceEEEEecccC
Q 036835 194 FLSLRSEEIVSGGRMFLTFIGRS 216 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
++..-.+-|+|||+++++.+...
T Consensus 241 ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeCcHh
Confidence 55555667799999999877653
No 103
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.85 E-value=0.0046 Score=55.57 Aligned_cols=121 Identities=13% Similarity=0.209 Sum_probs=74.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
..++++|.+||||-.|+.++..+-. +. ++. +-+|+..| +|.---....-+..-...+..++ +.-+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s----~~---~~~--~~~V~v~D-----inp~mL~vgkqRa~~~~l~~~~~-~~w~ 164 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKS----QF---GDR--ESKVTVLD-----INPHMLAVGKQRAKKRPLKASSR-VEWV 164 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhcc----cc---CCC--CceEEEEe-----CCHHHHHHHHHHHhhcCCCcCCc-eEEE
Confidence 4699999999999999999865522 11 111 24455444 44432222221210011111221 2234
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.++--.--||+++.|...+++.+--..+++.. ..+||+ =|||||++.
T Consensus 165 ~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~-----------------l~EAYR----------------VLKpGGrf~ 211 (296)
T KOG1540|consen 165 EGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------LREAYR----------------VLKPGGRFS 211 (296)
T ss_pred eCCcccCCCCCCcceeEEEecceecCCCHHHH-----------------HHHHHH----------------hcCCCcEEE
Confidence 45665666899999999999998866665542 345555 359999999
Q ss_pred EEecccCCC
Q 036835 210 LTFIGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+..|..-+.
T Consensus 212 cLeFskv~~ 220 (296)
T KOG1540|consen 212 CLEFSKVEN 220 (296)
T ss_pred EEEcccccc
Confidence 999988774
No 104
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.79 E-value=0.0069 Score=58.02 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=71.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|.-|+.+.+.. .+..+|+-+|+-.+=-..+ ++.+...+..++ ..+-
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~rl~~~-------~~n~~r~g~~~v--~~~~ 294 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISREKIQLV-------EKHAKRLKLSSI--EIKI 294 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHH-------HHHHHHcCCCeE--EEEE
Confidence 4689999999999999876322 0236888888863111111 111111111221 1122
Q ss_pred CCccccc-CCCCceeEEEe---ccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 131 GSFYERL-FQSRSINFIHS---SYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 ~SFy~~l-~p~~Svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++...-. +.++++|.|+. ++.+..+.+.|.... ..+ ++ -.++..+.-..+|..-++-|+|||
T Consensus 295 ~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~~-~~----~~~~l~~~Q~~iL~~a~~~LkpGG 360 (431)
T PRK14903 295 ADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RVN-KE----DFKKLSEIQLRIVSQAWKLLEKGG 360 (431)
T ss_pred CchhhhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hCC-HH----HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2321101 23567899886 344444444443211 011 11 123344455668988899999999
Q ss_pred eEEEEecccCCC
Q 036835 207 RMFLTFIGRSIA 218 (242)
Q Consensus 207 ~lvl~~~g~~~~ 218 (242)
+|+.++.....+
T Consensus 361 ~LvYsTCs~~~e 372 (431)
T PRK14903 361 ILLYSTCTVTKE 372 (431)
T ss_pred EEEEEECCCChh
Confidence 999999886543
No 105
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.76 E-value=0.0044 Score=57.48 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=34.1
Q ss_pred CceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecc
Q 036835 141 RSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIG 214 (242)
Q Consensus 141 ~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
..+|++-+-.|||..=.-. +-.+.||+.-++-|+|||+++.+++-
T Consensus 144 ~~FDvVScQFalHY~Fese-----------------------------~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFESE-----------------------------EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp S-EEEEEEES-GGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCcceeehHHHHHHhcCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 4999999999999843311 23456999999999999999999983
No 106
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.75 E-value=0.0031 Score=48.17 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=59.5
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCC-CCceeeccC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKF-GPCFIAGMP 130 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~vp 130 (242)
.+|+|+|||+|..++.+.... ..+++..|+-. ..-.+.+. .+..... .+ +..+-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~----------------~~~~~gvdi~~-~~~~~a~~------~~~~~~~~~~--~~~~~ 56 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG----------------AARVTGVDIDP-EAVELARR------NLPRNGLDDR--VEVIV 56 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC----------------TCEEEEEESSH-HHHHHHHH------HCHHCTTTTT--EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC----------------CCeEEEEEECH-HHHHHHHH------HHHHccCCce--EEEEE
Confidence 589999999998877665221 26666666641 11111111 0111100 11 11233
Q ss_pred CCccccc--CCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 131 GSFYERL--FQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 ~SFy~~l--~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++..-. ++.+++|++++. |+-.... .. .+...++...|++.-.+-|+|||.+
T Consensus 57 ~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~~--------~~--------~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 57 GDARDLPEPLPDGKFDLIVTN---------PPYGPRS--------GD--------KAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp SHHHHHHHTCTTT-EEEEEE-----------STTSBT--------T------------GGCHHHHHHHHHHHHEEEEEEE
T ss_pred CchhhchhhccCceeEEEEEC---------CCCcccc--------cc--------chhhHHHHHHHHHHHHHHcCCCeEE
Confidence 3554433 788999999992 2211100 00 0000115566999999999999999
Q ss_pred EEEec
Q 036835 209 FLTFI 213 (242)
Q Consensus 209 vl~~~ 213 (242)
++.+.
T Consensus 112 ~~~~~ 116 (117)
T PF13659_consen 112 VFITP 116 (117)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 98764
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.74 E-value=0.0088 Score=57.34 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=69.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.. . ..-+|+-.|+-..=...+-+.+ +.....+ +..+-
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~-~-------------~~~~V~avD~s~~~l~~~~~~~-------~~~g~~~--v~~~~ 307 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM-Q-------------NRGQITAVDRYPQKLEKIRSHA-------SALGITI--IETIE 307 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh-C-------------CCcEEEEEECCHHHHHHHHHHH-------HHhCCCe--EEEEe
Confidence 4689999999999998776332 0 1257888888632111111111 1111112 22233
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccC----CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLET----NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++. ..+.|++++|.++. ++|+.-.. +.+.-|. .++.. .++..+.-..+|..-++-|+|||
T Consensus 308 ~Da-~~~~~~~~fD~Vl~--------D~Pcsg~g~~~r~p~~~~~--~~~~~-----~~~l~~~q~~iL~~a~~~lkpgG 371 (445)
T PRK14904 308 GDA-RSFSPEEQPDAILL--------DAPCTGTGVLGRRAELRWK--LTPEK-----LAELVGLQAELLDHAASLLKPGG 371 (445)
T ss_pred Ccc-cccccCCCCCEEEE--------cCCCCCcchhhcCcchhhc--CCHHH-----HHHHHHHHHHHHHHHHHhcCCCc
Confidence 344 23346778999984 34432110 0000010 11111 12233345568988899999999
Q ss_pred eEEEEecccCC
Q 036835 207 RMFLTFIGRSI 217 (242)
Q Consensus 207 ~lvl~~~g~~~ 217 (242)
+|+.++.....
T Consensus 372 ~lvystcs~~~ 382 (445)
T PRK14904 372 VLVYATCSIEP 382 (445)
T ss_pred EEEEEeCCCCh
Confidence 99999887653
No 108
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.71 E-value=0.019 Score=49.21 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=26.8
Q ss_pred cceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 167 RNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 167 g~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+.|+|.++.. +...|+...+-|+|||+||.+..-..+
T Consensus 104 daiFIGGg~~--------------i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 104 DAIFIGGGGN--------------IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CEEEECCCCC--------------HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 5677776533 233788888889999999998765544
No 109
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.69 E-value=0.0033 Score=56.67 Aligned_cols=53 Identities=9% Similarity=0.220 Sum_probs=40.1
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++-++-+--++++|+|+++.+-+|+= .||..|++--.+=|+|||.|
T Consensus 215 ~~cDm~~vPl~d~svDvaV~CLSLMg----------------------------------tn~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 215 IACDMRNVPLEDESVDVAVFCLSLMG----------------------------------TNLADFIKEANRILKPGGLL 260 (325)
T ss_pred eeccccCCcCccCcccEEEeeHhhhc----------------------------------ccHHHHHHHHHHHhccCceE
Confidence 34455555678999999988666542 36667888888899999999
Q ss_pred EEEeccc
Q 036835 209 FLTFIGR 215 (242)
Q Consensus 209 vl~~~g~ 215 (242)
.+...-.
T Consensus 261 ~IAEv~S 267 (325)
T KOG3045|consen 261 YIAEVKS 267 (325)
T ss_pred EEEehhh
Confidence 9987744
No 110
>PRK14967 putative methyltransferase; Provisional
Probab=96.68 E-value=0.0065 Score=52.58 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=62.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . ..-+++..|+.. ..-...+ ........ + +..+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~-~~l~~a~------~n~~~~~~-~--~~~~~ 90 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISR-RAVRSAR------LNALLAGV-D--VDVRR 90 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCH-HHHHHHH------HHHHHhCC-e--eEEEE
Confidence 46999999999998776541 1 113566666652 1111111 01111111 1 22344
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccC-CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLET-NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+++.+ .++.+++|++++.--.+.-+ +....+ +....|..+. -...++..|++.-.+-|+|||+++
T Consensus 91 ~d~~~-~~~~~~fD~Vi~npPy~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 91 GDWAR-AVEFRPFDVVVSNPPYVPAP--PDAPPSRGPARAWDAGP-----------DGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred Cchhh-hccCCCeeEEEECCCCCCCC--cccccccChhHhhhCCC-----------cHHHHHHHHHHHHHHhcCCCcEEE
Confidence 57755 45778999999853211111 100000 0000111000 012345668887788899999999
Q ss_pred EEeccc
Q 036835 210 LTFIGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+..-..
T Consensus 157 ~~~~~~ 162 (223)
T PRK14967 157 LVQSEL 162 (223)
T ss_pred EEEecc
Confidence 865444
No 111
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.66 E-value=0.016 Score=52.65 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcccCceEEEEecccCCC
Q 036835 191 FSAFLSLRSEEIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
+..|+.--.+-|+|||.+.+.+.+++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecccccC
Confidence 4457778888999999999999988443
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.64 E-value=0.012 Score=56.16 Aligned_cols=127 Identities=9% Similarity=0.072 Sum_probs=66.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.. . ..-+|+-.|.-..= .+.+ +..+...+..++ ..+.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~-~-------------~~g~v~a~D~~~~r----l~~~---~~n~~r~g~~~v--~~~~ 309 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELM-G-------------DQGEIWAVDRSASR----LKKL---QENAQRLGLKSI--KILA 309 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHh-C-------------CCceEEEEcCCHHH----HHHH---HHHHHHcCCCeE--EEEe
Confidence 4789999999999998876332 1 13567777774211 1111 111111122221 1222
Q ss_pred CCccccc----CCCCceeEEEeccceeecccCCCcccC----CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036835 131 GSFYERL----FQSRSINFIHSSYSVHWLSKVPENLET----NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEI 202 (242)
Q Consensus 131 ~SFy~~l----~p~~Svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 202 (242)
++.-.-. ++++++|.++. ++|+.-.. +.+.-| ..++.. .+...+.-..+|..-++-|
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~G~~~r~p~~~~--~~~~~~-----~~~l~~~Q~~iL~~a~~~l 374 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILL--------DAPCSGLGTLHRHPDARW--RQTPEK-----IQELAPLQAELLESLAPLL 374 (434)
T ss_pred CChhhcccccccccccCCEEEE--------eCCCCcccccccCcchhh--hCCHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 3332111 34678888886 55553211 000001 011111 1223334456888888999
Q ss_pred ccCceEEEEeccc
Q 036835 203 VSGGRMFLTFIGR 215 (242)
Q Consensus 203 ~pGG~lvl~~~g~ 215 (242)
+|||+|+.++..-
T Consensus 375 kpgG~lvystcsi 387 (434)
T PRK14901 375 KPGGTLVYATCTL 387 (434)
T ss_pred CCCCEEEEEeCCC
Confidence 9999999887654
No 113
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.62 E-value=0.0099 Score=54.62 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=68.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
--+|+|+||+.|.-++.+. ++ | + -.|+--| |+=.|..-|+.+..+.. ....+|.. |
T Consensus 116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~lg-----~~~~~~~l--p 171 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFLG-----QDPPVFEL--P 171 (315)
T ss_pred CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHhC-----CCccEEEc--C
Confidence 4799999999999988775 11 1 2 3344444 43367776766654321 01234433 3
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
-.. +.|-..+++|.++|.- |.+...+|-. .|+.-..-|+|||.|+|
T Consensus 172 lgv-E~Lp~~~~FDtVF~MG------------------VLYHrr~Pl~---------------~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 172 LGV-EDLPNLGAFDTVFSMG------------------VLYHRRSPLD---------------HLKQLKDSLRPGGELVL 217 (315)
T ss_pred cch-hhccccCCcCEEEEee------------------ehhccCCHHH---------------HHHHHHHhhCCCCEEEE
Confidence 333 5555578999999932 3334445532 56666778899999999
Q ss_pred EecccCCC
Q 036835 211 TFIGRSIA 218 (242)
Q Consensus 211 ~~~g~~~~ 218 (242)
=++..+.+
T Consensus 218 ETlvi~g~ 225 (315)
T PF08003_consen 218 ETLVIDGD 225 (315)
T ss_pred EEeeecCC
Confidence 88866544
No 114
>PRK14968 putative methyltransferase; Provisional
Probab=96.60 E-value=0.015 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcccCceEEEEec
Q 036835 190 DFSAFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
....|++.-.+-|+|||.+++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356688888899999999988764
No 115
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.014 Score=51.23 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCC--ceee
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGP--CFIA 127 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~--~f~~ 127 (242)
...-++++|||+|+|=-.. ...|.-.|++-|=- .-|..... .+....++.+ .|+.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy----------------~~~p~~svt~lDpn-----~~mee~~~--ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFY----------------PWKPINSVTCLDPN-----EKMEEIAD--KSAAEKKPLQVERFVV 132 (252)
T ss_pred CccceEEecccCCCCcccc----------------cCCCCceEEEeCCc-----HHHHHHHH--HHHhhccCcceEEEEe
Confidence 3677899999999993211 11234555555533 11221110 1111122222 4666
Q ss_pred ccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCce
Q 036835 128 GMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 128 ~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
|-+.+. -|| ++.|+|.++...+|-= -.++ .+ -|+.-.+=|+|||+
T Consensus 133 a~ge~l-~~l-~d~s~DtVV~TlvLCS------------------ve~~--------~k-------~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 133 ADGENL-PQL-ADGSYDTVVCTLVLCS------------------VEDP--------VK-------QLNEVRRLLRPGGR 177 (252)
T ss_pred echhcC-ccc-ccCCeeeEEEEEEEec------------------cCCH--------HH-------HHHHHHHhcCCCcE
Confidence 655554 233 9999999999655432 1111 12 23333344599999
Q ss_pred EEEEecccCCC
Q 036835 208 MFLTFIGRSIA 218 (242)
Q Consensus 208 lvl~~~g~~~~ 218 (242)
+++..-++..-
T Consensus 178 iifiEHva~~y 188 (252)
T KOG4300|consen 178 IIFIEHVAGEY 188 (252)
T ss_pred EEEEecccccc
Confidence 99998887654
No 116
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.57 E-value=0.0079 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.9
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
...+|+|+|||+|..++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 45799999999998888665
No 117
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.53 E-value=0.027 Score=53.92 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=65.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.. . +.-+|+-.|+-.+=- ...+ ..+......+ +..+-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~-------------~-~~~~v~avDi~~~~l-~~~~------~n~~~~g~~~--v~~~~ 307 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL-------------K-NTGKVVALDIHEHKL-KLIE------ENAKRLGLTN--IETKA 307 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh-------------C-CCCEEEEEeCCHHHH-HHHH------HHHHHcCCCe--EEEEe
Confidence 4689999999999999776332 0 235778788753111 1111 1111111112 22333
Q ss_pred CCcccc--cCCCCceeEEEe---ccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 131 GSFYER--LFQSRSINFIHS---SYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 ~SFy~~--l~p~~Svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
+++.+- .++ +++|++++ ++....+.+-|... |. .++..+ +...+--..+|+.-.+-|+||
T Consensus 308 ~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~--~~~~~~-----~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 308 LDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YN--KTKEDI-----ESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred CCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchh-------hc--CCHHHH-----HHHHHHHHHHHHHHHHHcCCC
Confidence 454321 123 78999986 22333333333311 10 011111 112222345788888889999
Q ss_pred ceEEEEeccc
Q 036835 206 GRMFLTFIGR 215 (242)
Q Consensus 206 G~lvl~~~g~ 215 (242)
|+|+.++..-
T Consensus 373 G~lvystcs~ 382 (444)
T PRK14902 373 GILVYSTCTI 382 (444)
T ss_pred CEEEEEcCCC
Confidence 9999876544
No 118
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.45 E-value=0.0032 Score=51.98 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=41.1
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++..+--++++++|++++.+++||+.+.. .+|+.-.+-|+|||.+++
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVDRL---------------------------------RAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCCHH---------------------------------HHHHHHHHHcCcCeEEEE
Confidence 35544446888999999999999974322 267777777899999999
Q ss_pred EecccCC
Q 036835 211 TFIGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
.-++..+
T Consensus 80 ~d~~~~~ 86 (160)
T PLN02232 80 LDFNKSN 86 (160)
T ss_pred EECCCCC
Confidence 9887654
No 119
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.41 E-value=0.0064 Score=59.42 Aligned_cols=138 Identities=10% Similarity=0.135 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 036835 24 IQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFN 103 (242)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn 103 (242)
.|++.++...|.+.=....+.. .....++|+|||.|..++.+.. ..|+..++--|.-.+
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A~---------------~~p~~~~iGiE~~~~--- 382 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQAK---------------MNPDALFIGVEVYLN--- 382 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHHH---------------hCCCCCEEEEEeeHH---
Confidence 7888888888876644333321 3478999999999988776652 124455555555432
Q ss_pred HHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHH
Q 036835 104 SIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAF 183 (242)
Q Consensus 104 ~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay 183 (242)
.+-+.+.. .......++.+..-...+....||++|||-++-.+.=-|-.+-= .|.++.. +
T Consensus 383 ~~~~~~~~----~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh-----~krRl~~-----~------ 442 (506)
T PRK01544 383 GVANVLKL----AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ-----KKKRIFN-----K------ 442 (506)
T ss_pred HHHHHHHH----HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC-----ccccccC-----H------
Confidence 22222211 11123346554332333457789999999999988777722211 1222211 1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 184 LEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 184 ~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.||+.-++-|+|||.+.+.
T Consensus 443 ---------~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 443 ---------ERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ---------HHHHHHHHhcCCCCEEEEE
Confidence 1788888888999999874
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.38 E-value=0.037 Score=49.12 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcccCceEEEEe
Q 036835 191 FSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
++.+++.=.+-|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 5567877788899999999864
No 121
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.38 E-value=0.034 Score=51.39 Aligned_cols=142 Identities=16% Similarity=0.246 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 036835 34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
.+|++...++... .+...+|+|||||+|.-|..+++.+. +. . ..+..+=-|+.. ++ | ....
T Consensus 61 ~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL~----~~------~-~~~~Y~plDIS~-~~--L----~~a~ 121 (319)
T TIGR03439 61 EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEALE----RQ------K-KSVDYYALDVSR-SE--L----QRTL 121 (319)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHH----hc------C-CCceEEEEECCH-HH--H----HHHH
Confidence 3444444444322 24456899999999999998886552 21 1 136777777763 11 1 1111
Q ss_pred hhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHH
Q 036835 114 KRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSA 193 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~ 193 (242)
..+.....+.+-+.++-|+|. ..++||.+ |. ...++..++.-++|=.... ..+-..
T Consensus 122 ~~L~~~~~p~l~v~~l~gdy~---------------~~l~~l~~-~~-~~~~~r~~~flGSsiGNf~-------~~ea~~ 177 (319)
T TIGR03439 122 AELPLGNFSHVRCAGLLGTYD---------------DGLAWLKR-PE-NRSRPTTILWLGSSIGNFS-------RPEAAA 177 (319)
T ss_pred HhhhhccCCCeEEEEEEecHH---------------HHHhhccc-cc-ccCCccEEEEeCccccCCC-------HHHHHH
Confidence 122212345577778888884 34444432 00 0001112222222110000 011223
Q ss_pred HHHHHHh-hcccCceEEEEecccCCC
Q 036835 194 FLSLRSE-EIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 194 FL~~Ra~-EL~pGG~lvl~~~g~~~~ 218 (242)
||+.-++ -|.|||.|++++=+.++.
T Consensus 178 fL~~~~~~~l~~~d~lLiG~D~~k~~ 203 (319)
T TIGR03439 178 FLAGFLATALSPSDSFLIGLDGCKDP 203 (319)
T ss_pred HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 7766666 889999999987655554
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.03 Score=50.70 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=64.0
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCC
Q 036835 53 NVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~S 132 (242)
+|+|+|||||..++.+.... |...|+..|+.. |--.+-+. -.......+++ .... +
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~-~Al~~A~~------Na~~~~l~~~~-~~~~-d 168 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP-DALALARE------NAERNGLVRVL-VVQS-D 168 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH-HHHHHHHH------HHHHcCCccEE-EEee-e
Confidence 89999999999988776322 457899999862 11111110 01111111211 1222 6
Q ss_pred cccccCCCCceeEEEeccceeecccCCCcccCCCcceEEc---CCCChHHHHHHHH-HHHHHHHHHHHHHHhhcccCceE
Q 036835 133 FYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYIT---KSSPPSVCQAFLE-QFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 133 Fy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~---~~s~~~v~~ay~~-Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++.+-. .+|+++| .|+-+..+ ...... .-.| ....+.. -.....++|+..=..-|+|||.+
T Consensus 169 lf~~~~~--~fDlIVs---------NPPYip~~-~~~~~~~~~~~EP--~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l 234 (280)
T COG2890 169 LFEPLRG--KFDLIVS---------NPPYIPAE-DPELLPEVVRYEP--LLALVGGGDGLEVYRRILGEAPDILKPGGVL 234 (280)
T ss_pred cccccCC--ceeEEEe---------CCCCCCCc-ccccChhhhccCH--HHHHccCccHHHHHHHHHHhhHHHcCCCcEE
Confidence 6666655 8999999 56655432 000000 0001 0111111 12234555787777888998888
Q ss_pred EEE
Q 036835 209 FLT 211 (242)
Q Consensus 209 vl~ 211 (242)
++-
T Consensus 235 ~le 237 (280)
T COG2890 235 ILE 237 (280)
T ss_pred EEE
Confidence 873
No 123
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.34 E-value=0.016 Score=54.16 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=71.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.--.|+|.|||+|..|+..++.=- -.||--. -+. ..+....+...+--.-.+..+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA----------------~~vYAvE-----AS~----MAqyA~~Lv~~N~~~~rItVI 231 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA----------------KKVYAVE-----ASE----MAQYARKLVASNNLADRITVI 231 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc----------------ceEEEEe-----hhH----HHHHHHHHHhcCCccceEEEc
Confidence 356899999999999987663211 1222111 111 111112222211113456789
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
||-. +.+-.|+.+|+++| -|-+ .+-+ -++=+..+|.+| +-|+|.|.|+
T Consensus 232 ~GKi-EdieLPEk~DviIS---------EPMG------~mL~---------------NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 232 PGKI-EDIELPEKVDVIIS---------EPMG------YMLV---------------NERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred cCcc-ccccCchhccEEEe---------ccch------hhhh---------------hHHHHHHHHHHH-hhcCCCCccc
Confidence 9988 88888899999999 2332 1211 135677899999 9999999997
Q ss_pred EEecccCCCCCCCch
Q 036835 210 LTFIGRSIADPSSKD 224 (242)
Q Consensus 210 l~~~g~~~~~~~~~~ 224 (242)
= ++|+-...|.+.+
T Consensus 280 P-T~gdiHlAPFsDE 293 (517)
T KOG1500|consen 280 P-TVGDIHLAPFSDE 293 (517)
T ss_pred C-cccceeecccchH
Confidence 5 4566666676654
No 124
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.27 E-value=0.058 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcccCceEEEEecccC
Q 036835 192 SAFLSLRSEEIVSGGRMFLTFIGRS 216 (242)
Q Consensus 192 ~~FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
..+|+.-++-|+|||++++.+....
T Consensus 274 ~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 274 ERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHHHccCCcEEEEEEcCCC
Confidence 4577777788899999999887543
No 125
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.25 E-value=0.019 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHhhcccCceEEEEeccc
Q 036835 194 FLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
++..-.+-|+|||+++++.+..
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcH
Confidence 4555556679999999986654
No 126
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.20 E-value=0.021 Score=47.76 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=55.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHhhhhhcCCCCceeec
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYKRIKKDKFGPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~ 128 (242)
+..+|+|||||+|--++.+.... ..-.|+++|++ +...+.+. +..... ....++-+..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~---------------~~~~Vv~TD~~--~~l~~l~~Ni~~N~~----~~~~~v~v~~ 103 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF---------------GAARVVLTDYN--EVLELLRRNIELNGS----LLDGRVSVRP 103 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S---HHHHHHHHHHTT------------EEEE
T ss_pred CCceEEEECCccchhHHHHHhcc---------------CCceEEEeccc--hhhHHHHHHHHhccc----cccccccCcE
Confidence 46899999999998877665220 13789999998 32222221 110000 0011222221
Q ss_pred --cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 129 --MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 --vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++.........++++|+|+.+=++.+=+ .+..|++.-.+=|+|+|
T Consensus 104 L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~---------------------------------~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 104 LDWGDELDSDLLEPHSFDVILASDVLYDEE---------------------------------LFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp --TTS-HHHHHHS-SSBSEEEEES--S-GG---------------------------------GHHHHHHHHHHHBTT-T
T ss_pred EEecCcccccccccccCCEEEEecccchHH---------------------------------HHHHHHHHHHHHhCCCC
Confidence 2232333445667889988866665511 12225555566679999
Q ss_pred eEEEEeccc
Q 036835 207 RMFLTFIGR 215 (242)
Q Consensus 207 ~lvl~~~g~ 215 (242)
.++++..-|
T Consensus 151 ~vl~~~~~R 159 (173)
T PF10294_consen 151 KVLLAYKRR 159 (173)
T ss_dssp TEEEEEE-S
T ss_pred EEEEEeCEe
Confidence 977777666
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.20 E-value=0.0081 Score=51.52 Aligned_cols=113 Identities=18% Similarity=0.348 Sum_probs=63.4
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec-cC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG-MP 130 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-vp 130 (242)
..++|+|||.|...+.+.. ..|+..++--|.-.+=.....+.+ ......++.+.- -.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~---------------~~Pd~n~iGiE~~~~~v~~a~~~~-------~~~~l~Nv~~~~~da 76 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAK---------------RNPDINFIGIEIRKKRVAKALRKA-------EKRGLKNVRFLRGDA 76 (195)
T ss_dssp EEEEEET-TTSHHHHHHHH---------------HSTTSEEEEEES-HHHHHHHHHHH-------HHHTTSSEEEEES-C
T ss_pred CeEEEecCCCCHHHHHHHH---------------HCCCCCEEEEecchHHHHHHHHHH-------HhhcccceEEEEccH
Confidence 3999999999988665541 125677777776532222221111 112335655543 44
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
..+...++|++||+-++=.+-=-|-.+-= .|.++. .+ .||..-++-|+|||.+.+
T Consensus 77 ~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----~krRl~-----~~---------------~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 77 RELLRRLFPPGSVDRIYINFPDPWPKKRH-----HKRRLV-----NP---------------EFLELLARVLKPGGELYF 131 (195)
T ss_dssp TTHHHHHSTTTSEEEEEEES-----SGGG-----GGGSTT-----SH---------------HHHHHHHHHEEEEEEEEE
T ss_pred HHHHhhcccCCchheEEEeCCCCCcccch-----hhhhcC-----Cc---------------hHHHHHHHHcCCCCEEEE
Confidence 56678899999999998876666632211 111111 11 188888888999999877
Q ss_pred E
Q 036835 211 T 211 (242)
Q Consensus 211 ~ 211 (242)
.
T Consensus 132 ~ 132 (195)
T PF02390_consen 132 A 132 (195)
T ss_dssp E
T ss_pred E
Confidence 4
No 128
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.047 Score=50.09 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 31 KAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
..+.+|++... +..+|+|+|||||-.++...
T Consensus 151 lcL~~Le~~~~--------~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 151 LCLEALEKLLK--------KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred HHHHHHHHhhc--------CCCEEEEecCChhHHHHHHH
Confidence 44555665532 56899999999998888654
No 129
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.08 E-value=0.084 Score=48.70 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+|+|+|||+|.+++.+.
T Consensus 145 ~~~VLDlGcGtG~~a~~la 163 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA 163 (315)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 5799999999999988776
No 130
>PRK00811 spermidine synthase; Provisional
Probab=96.02 E-value=0.017 Score=52.23 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHhhhhhcCCCCc-ee
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYKRIKKDKFGPC-FI 126 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~-f~ 126 (242)
+++-+|+|+|||+|..+..+++. ++.-+|...|+-. ..-.+.+. ++...... ...+++ ++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~---------------~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~--~~d~rv~v~ 136 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH---------------PSVEKITLVEIDE-RVVEVCRKYLPEIAGGA--YDDPRVELV 136 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC---------------CCCCEEEEEeCCH-HHHHHHHHHhHHhcccc--ccCCceEEE
Confidence 56789999999999887766411 1224667777753 22222222 11110000 011222 22
Q ss_pred eccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 127 AGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 127 ~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+-+..|-.+ +++++|+|++-.+-+| .|. ...|. ..|++...+-|+|||
T Consensus 137 ~~Da~~~l~~--~~~~yDvIi~D~~dp~---~~~-------------------~~l~t-------~ef~~~~~~~L~~gG 185 (283)
T PRK00811 137 IGDGIKFVAE--TENSFDVIIVDSTDPV---GPA-------------------EGLFT-------KEFYENCKRALKEDG 185 (283)
T ss_pred ECchHHHHhh--CCCcccEEEECCCCCC---Cch-------------------hhhhH-------HHHHHHHHHhcCCCc
Confidence 3322333333 5678999998544333 011 01121 247777778889999
Q ss_pred eEEEE
Q 036835 207 RMFLT 211 (242)
Q Consensus 207 ~lvl~ 211 (242)
++++.
T Consensus 186 vlv~~ 190 (283)
T PRK00811 186 IFVAQ 190 (283)
T ss_pred EEEEe
Confidence 99874
No 131
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.00 E-value=0.01 Score=57.31 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=58.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|+.+...++.. .+. + -.++||--.--.|=+-++=+ .+..++++.. |..+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~----~~~----~---~a~~VyAVEkn~~A~~~l~~-------~v~~n~w~~~-V~vi~ 247 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG----ARA----G---GAVKVYAVEKNPNAVVTLQK-------RVNANGWGDK-VTVIH 247 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT----HHH----C---CESEEEEEESSTHHHHHHHH-------HHHHTTTTTT-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHH----HHh----C---CCeEEEEEcCCHhHHHHHHH-------HHHhcCCCCe-EEEEe
Confidence 5899999999999988776433 222 1 12555544332111111111 1111223222 45677
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
|+. +.+-++..+|+++| -||=. ..+|+ .+| + .|.+|.+=|+|||.++
T Consensus 248 ~d~-r~v~lpekvDIIVS----ElLGs----fg~nE-------l~p-E---------------~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 248 GDM-REVELPEKVDIIVS----ELLGS----FGDNE-------LSP-E---------------CLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-T-TTSCHSS-EEEEEE-------BT----TBTTT-------SHH-H---------------HHHHGGGGEEEEEEEE
T ss_pred Ccc-cCCCCCCceeEEEE----eccCC----ccccc-------cCH-H---------------HHHHHHhhcCCCCEEe
Confidence 777 88888889999999 44421 22232 111 2 5778888999999886
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.96 E-value=0.037 Score=49.40 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 188 QRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
.+.-..+|+.=++-|+|||+|+.++.....
T Consensus 175 ~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 175 SALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 334455888888889999999998876543
No 133
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.78 E-value=0.011 Score=55.05 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=64.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhh-cCCCCceeec
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKK-DKFGPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~-~~~~~~f~~~ 128 (242)
+.-+|+|.|||+|..|+.-++. | . ..+..+ |++.+..... .+.. ++. ..-+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA------------G-A-~~V~aV-------e~S~ia~~a~----~iv~~N~~-~~ii~v 113 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA------------G-A-RKVYAV-------EASSIADFAR----KIVKDNGL-EDVITV 113 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh------------C-c-ceEEEE-------echHHHHHHH----HHHHhcCc-cceEEE
Confidence 4679999999999998866521 1 0 112222 5555443221 1111 111 223344
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.|.--+-..|...||+++|=|-=.||- +..=+...|-+|-+-|+|||.+
T Consensus 114 i~gkvEdi~LP~eKVDiIvSEWMGy~Ll------------------------------~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 114 IKGKVEDIELPVEKVDIIVSEWMGYFLL------------------------------YESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred eecceEEEecCccceeEEeehhhhHHHH------------------------------HhhhhhhhhhhhhhccCCCceE
Confidence 5666656667889999999955444432 2334556899999999999998
Q ss_pred E
Q 036835 209 F 209 (242)
Q Consensus 209 v 209 (242)
+
T Consensus 164 ~ 164 (346)
T KOG1499|consen 164 Y 164 (346)
T ss_pred c
Confidence 5
No 134
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.64 E-value=0.053 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcccCceEEEEecc
Q 036835 191 FSAFLSLRSEEIVSGGRMFLTFIG 214 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
+..+|+.-.+-|+|||++++....
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeec
Confidence 344777777779999999998753
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.39 E-value=0.029 Score=50.15 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.7
Q ss_pred HHHHHHHhhcccCceEEEE
Q 036835 193 AFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 193 ~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|++.-++-|+|||++++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 3777777888999999986
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.35 E-value=0.13 Score=47.54 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.2
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
+..+|+|+|||+|.+|..+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH
Confidence 34799999999999998775
No 137
>PRK04457 spermidine synthase; Provisional
Probab=95.20 E-value=0.056 Score=48.34 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.7
Q ss_pred HHHHHHhhcccCceEEEEecccC
Q 036835 194 FLSLRSEEIVSGGRMFLTFIGRS 216 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
|++...+-|+|||++++...+++
T Consensus 159 fl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 159 FFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHhcCCCcEEEEEcCCCc
Confidence 78888888999999999876553
No 138
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.17 E-value=0.048 Score=49.63 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=83.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecC
Q 036835 17 SYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLND 96 (242)
Q Consensus 17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nD 96 (242)
-|++.+..=...-...+|+..+.+... +.-..+.|.|||.|.-+. .. |...++-.|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~------------------~~-p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLG------------------VN-PLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCc------------------CC-Ccceeeecc
Confidence 366655553333344566777766533 446889999999996532 12 346777777
Q ss_pred CCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCC
Q 036835 97 LPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSP 176 (242)
Q Consensus 97 Lp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~ 176 (242)
++. ..+. .-+. .....- +-.+...-.+++.|+|.+.|.+.+||||.--.
T Consensus 73 ~c~-------~l~~----~ak~-~~~~~~---~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R---------------- 121 (293)
T KOG1331|consen 73 LCT-------GLLG----GAKR-SGGDNV---CRADALKLPFREESFDAALSIAVIHHLSTRER---------------- 121 (293)
T ss_pred hhh-------hhcc----cccc-CCCcee---ehhhhhcCCCCCCccccchhhhhhhhhhhHHH----------------
Confidence 772 1111 1111 111101 11245577789999999999999999886322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCCCCC
Q 036835 177 PSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIADP 220 (242)
Q Consensus 177 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~ 220 (242)
++ +-++.-.+.|+|||.+.+..-+.....+
T Consensus 122 -------R~-------~~l~e~~r~lrpgg~~lvyvwa~~q~~~ 151 (293)
T KOG1331|consen 122 -------RE-------RALEELLRVLRPGGNALVYVWALEQHQS 151 (293)
T ss_pred -------HH-------HHHHHHHHHhcCCCceEEEEehhhccCc
Confidence 11 1456666788999999999888766544
No 139
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.32 Score=41.90 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 036835 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
++..||+...++-. ..+.-++|+|||||--|-.+.+.+. |....+-.|+-. ..
T Consensus 28 LlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiNp----------~A 80 (209)
T KOG3191|consen 28 LLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDINP----------EA 80 (209)
T ss_pred HHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCCH----------HH
Confidence 56777877776643 2367899999999987777765552 346677777741 11
Q ss_pred hHhhhhhcCCCCceeeccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHH--HHHHH
Q 036835 112 FYKRIKKDKFGPCFIAGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFL--EQFQR 189 (242)
Q Consensus 112 ~~~~l~~~~~~~~f~~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~--~Q~~~ 189 (242)
....+...+-+.+-+-.|-.|+..-|-+ +++|+..= .|+-+....+.|- ......+|+ +-.++
T Consensus 81 ~~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~aGG~~Gr~ 145 (209)
T KOG3191|consen 81 LEATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWAGGKDGRE 145 (209)
T ss_pred HHHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHhcCcchHH
Confidence 1111211111233344556677666666 88887654 2443322112220 111233444 44445
Q ss_pred HHHHHHHHHHhhcccCceEEEEecccCCC
Q 036835 190 DFSAFLSLRSEEIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
=..+||..--.=|.|-|++.+....++..
T Consensus 146 v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 146 VTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred HHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 56678877777789999999988877553
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=94.90 E-value=0.05 Score=48.42 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~ 70 (242)
..+|+|+|||+|..++.+..
T Consensus 50 ~grVLDlG~GSG~Lalala~ 69 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVH 69 (241)
T ss_pred CCEEEEccChHHHHHHHHHH
Confidence 47999999999988887653
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=94.77 E-value=0.075 Score=50.18 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHhhcccCceEEEE
Q 036835 194 FLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~ 211 (242)
|++...+-|+|||+|++.
T Consensus 250 Fy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHhcCCCcEEEEe
Confidence 677777788999999886
No 142
>PLN02672 methionine S-methyltransferase
Probab=94.58 E-value=0.084 Score=56.05 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=24.2
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
.+|+|+|||+|..++.+.... +..+|+.-|+-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis 151 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDIN 151 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECC
Confidence 589999999999988776322 23577777775
No 143
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.57 E-value=0.56 Score=42.43 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=68.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHh---hhhh---cCCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYK---RIKK---DKFGP 123 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~---~l~~---~~~~~ 123 (242)
+++||--.|||||-=.-.+.-.+.+.... .....++|+-.|+-. ..|=+.-...+. .+++ ..-.+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId~---~~L~~A~~G~Y~~~~~~~~~~~~~~~r 166 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDIDL---SVLEKARAGIYPSRELLRGLPPELLRR 166 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECCH---HHHHHHhcCCCChhHhhccCCHHHHhh
Confidence 58999999999996544333222222221 122359999999952 222221111111 0011 11135
Q ss_pred ceeeccCCCcc--------------cccC---CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHH
Q 036835 124 CFIAGMPGSFY--------------ERLF---QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQ 186 (242)
Q Consensus 124 ~f~~~vp~SFy--------------~~l~---p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q 186 (242)
+|.-+..|+|- +-+. ..+-+|+|+|=+.|=.+++.- +
T Consensus 167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~------------------------q-- 220 (268)
T COG1352 167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET------------------------Q-- 220 (268)
T ss_pred hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH------------------------H--
Confidence 66666555442 2222 446799999955554443311 1
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEecccCCCC
Q 036835 187 FQRDFSAFLSLRSEEIVSGGRMFLTFIGRSIAD 219 (242)
Q Consensus 187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~ 219 (242)
.+.++.-+.-|+|||+|++ |..+..
T Consensus 221 -----~~il~~f~~~L~~gG~Lfl---G~sE~~ 245 (268)
T COG1352 221 -----ERILRRFADSLKPGGLLFL---GHSETI 245 (268)
T ss_pred -----HHHHHHHHHHhCCCCEEEE---ccCccc
Confidence 1256666777899999999 665543
No 144
>PLN02366 spermidine synthase
Probab=94.23 E-value=0.13 Score=47.31 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.0
Q ss_pred CCccEEeeecCCCCcchHHH
Q 036835 49 PGCFNVADLGCSSGPNTFLV 68 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~ 68 (242)
+++-+|+++|||.|.....+
T Consensus 90 ~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred CCCCeEEEEcCCccHHHHHH
Confidence 56789999999999865444
No 145
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.84 E-value=0.21 Score=46.60 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=64.6
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.--.+.|||||-|.--+.-- +.. -.. -+-+-..|...||-..-++..-.... +..+...|+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~-------kAg-----I~~-~igiDIAevSI~qa~~RYrdm~~r~~---~~~f~a~f~~-- 178 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWD-------KAG-----IGE-YIGIDIAEVSINQARKRYRDMKNRFK---KFIFTAVFIA-- 178 (389)
T ss_pred cccccceeccCCcccHhHhh-------hhc-----ccc-eEeeehhhccHHHHHHHHHHHHhhhh---cccceeEEEE--
Confidence 34567889999998644321 111 000 12333333344444444443221111 1112334433
Q ss_pred CCCccccc---C--CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036835 130 PGSFYERL---F--QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 130 p~SFy~~l---~--p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 204 (242)
+-+|+++| + +.-++|++=|=+|+|+-=. +. + -...+|+.-++-|+|
T Consensus 179 ~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------te--------e----~ar~~l~Nva~~Lkp 229 (389)
T KOG1975|consen 179 ADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------TE--------E----SARIALRNVAKCLKP 229 (389)
T ss_pred eccchhHHHHhccCCCCCcceeeeeeeEeeeec-----------------cH--------H----HHHHHHHHHHhhcCC
Confidence 34666433 2 3334999999999998111 11 1 123488899999999
Q ss_pred CceEEEEeccc
Q 036835 205 GGRMFLTFIGR 215 (242)
Q Consensus 205 GG~lvl~~~g~ 215 (242)
||.++-|++-.
T Consensus 230 GG~FIgTiPds 240 (389)
T KOG1975|consen 230 GGVFIGTIPDS 240 (389)
T ss_pred CcEEEEecCcH
Confidence 99999887643
No 146
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.63 E-value=0.2 Score=43.12 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=26.3
Q ss_pred cCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 137 LFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 137 l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
..+.+.+|+|++-+.|-.++..- =.+.++.-++-|+|||+|+++
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~~-------------------------------~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPET-------------------------------QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ------EEEEEE-SSGGGS-HHH-------------------------------HHHHHHHHGGGEEEEEEEEE-
T ss_pred CcccCCccEEEecCEEEEeCHHH-------------------------------HHHHHHHHHHHcCCCCEEEEe
Confidence 44677899999977666544311 123778888999999999993
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.28 Score=42.78 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.2
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
...+|+|+|||||.+|..+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 46899999999999988654
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.33 E-value=0.063 Score=46.29 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=22.1
Q ss_pred cCCCccccc--CCCCceeEEEeccceeeccc
Q 036835 129 MPGSFYERL--FQSRSINFIHSSYSVHWLSK 157 (242)
Q Consensus 129 vp~SFy~~l--~p~~Svdl~~Ss~alhWLs~ 157 (242)
+.++-.+-| ||++|+|.++-+-|||=+.+
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 444554444 89999999999999988755
No 149
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.31 E-value=0.49 Score=39.25 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=27.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGN 100 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~N 100 (242)
+..+++|+|||.|.-|-.+++.. .+.-.|+--|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 57999999999999988766222 13578888888754
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.30 E-value=0.61 Score=47.49 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEec
Q 036835 187 FQRDFSAFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
..+|+..++..-.+-|+|||.++++..
T Consensus 631 ~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 631 VQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 456677788777888999999988654
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.30 E-value=0.61 Score=41.96 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 139 QSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 139 p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
-..-+|+|.+.+--.| ||..-. ..-+.+||++-+.-|.|||+||+
T Consensus 163 ~~~~fDiIlcLSiTkW--------------IHLNwg-------------D~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKW--------------IHLNWG-------------DDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccccEEEEEEeeee--------------Eecccc-------------cHHHHHHHHHHHHhhCcCcEEEE
Confidence 4456788888888888 333221 14578899999999999999998
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.15 E-value=0.21 Score=44.03 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=64.3
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~ 131 (242)
..++|||||.|...+.+. + ..|+.-++--+.-.+ .+-+.+. .......+++.+.-..+
T Consensus 50 pi~lEIGfG~G~~l~~~A--------~-------~nP~~nfiGiEi~~~---~v~~~l~----k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA--------K-------KNPEKNFLGIEIRVP---GVAKALK----KIKELGLKNLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHH--------H-------HCCCCCEEEEEEehH---HHHHHHH----HHHHcCCCcEEEEcCCH
Confidence 689999999997765544 1 124443333333321 1111111 11112233556554333
Q ss_pred -CcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 132 -SFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 132 -SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.+.+.++|++|+|=++=.+.=-|-.+-= +|.++-. + .||+.-++=|+|||.+.+
T Consensus 108 ~~~l~~~~~~~sl~~I~i~FPDPWpKkRH-----~KRRl~~----~----------------~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 108 VEVLDYLIPDGSLDKIYINFPDPWPKKRH-----HKRRLTQ----P----------------EFLKLYARKLKPGGVLHF 162 (227)
T ss_pred HHHHHhcCCCCCeeEEEEECCCCCCCccc-----cccccCC----H----------------HHHHHHHHHccCCCEEEE
Confidence 4457777778999999887777722211 2333321 1 188888888899999998
Q ss_pred E
Q 036835 211 T 211 (242)
Q Consensus 211 ~ 211 (242)
.
T Consensus 163 a 163 (227)
T COG0220 163 A 163 (227)
T ss_pred E
Confidence 4
No 153
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.06 E-value=0.63 Score=44.24 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEEEe
Q 036835 186 QFQRDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 186 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
.+.+++..++..-.+-|+|||.+++..
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 455677778888888899999999755
No 154
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.04 E-value=0.19 Score=44.08 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=25.3
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
++-+|+|+||++|..++.+...+ ++.-+++.-|..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d 102 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDID 102 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence 46799999999999988776332 123567777765
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.00 E-value=0.3 Score=42.41 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=15.4
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
.-.+|+|+|||||.+|..+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 35899999999999998765
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.92 E-value=0.042 Score=49.27 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=67.3
Q ss_pred ccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH------------H
Q 036835 5 SVPCMNGGRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISK------------I 72 (242)
Q Consensus 5 ~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~------------i 72 (242)
+.|.|.|=....+|.+|-..+..++..+...+. .....+|+|+|||+|..|..+.+. .
T Consensus 7 ~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~ 76 (272)
T PRK00274 7 ELLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDL 76 (272)
T ss_pred HHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHH
Confidence 345555544556677766665555544333221 123468999999999999988763 2
Q ss_pred HHHHHHHHhhhcCCCCceEEEecCCCCCchHHH-----hhcCchhHh-h-hhh---cCC-CCceeeccCCCcccccC-CC
Q 036835 73 IETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSI-----FESLPDFYK-R-IKK---DKF-GPCFIAGMPGSFYERLF-QS 140 (242)
Q Consensus 73 i~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~l-----f~~l~~~~~-~-l~~---~~~-~~~f~~~vp~SFy~~l~-p~ 140 (242)
++.+++.. . . +.++++..|...-++..+ +.++|-... . +.+ ... -...+..+...|-+|+. ++
T Consensus 77 ~~~~~~~~---~-~-~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~p 151 (272)
T PRK00274 77 APILAETF---A-E-DNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKP 151 (272)
T ss_pred HHHHHHhh---c-c-CceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCC
Confidence 33333321 1 1 358888888765555432 333331110 0 000 111 12344567777777876 55
Q ss_pred CceeE
Q 036835 141 RSINF 145 (242)
Q Consensus 141 ~Svdl 145 (242)
++-+.
T Consensus 152 g~~~y 156 (272)
T PRK00274 152 GSKAY 156 (272)
T ss_pred CCccc
Confidence 65443
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=92.75 E-value=0.13 Score=42.34 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.6
Q ss_pred CccEEeeecCCCCcchHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~ 70 (242)
..-+|+|+|||+|..|..+++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred CcCEEEEECCCccHHHHHHHh
Confidence 346899999999999998763
No 158
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=92.61 E-value=0.45 Score=46.30 Aligned_cols=129 Identities=12% Similarity=0.173 Sum_probs=70.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|++||.|.-|..+.+.+ . .+-.|+-||.-.+-...|-+.+..+ +..++-+....
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l-~-------------~~g~lvA~D~~~~R~~~L~~nl~r~-------G~~nv~v~~~D 172 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALM-N-------------NQGAIVANEYSASRVKVLHANISRC-------GVSNVALTHFD 172 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHc-C-------------CCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEeCc
Confidence 4799999999999998876433 1 1357888888754444444444321 12232222211
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccC----CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLET----NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
+.=+...+ ++++|.|.- ++|++-.. +.+..+ ..++..+.+.-..| +.+|..-++-|+|||
T Consensus 173 ~~~~~~~~-~~~fD~ILv--------DaPCSG~G~~rk~p~~~~--~~s~~~v~~l~~lQ-----~~iL~~A~~~LkpGG 236 (470)
T PRK11933 173 GRVFGAAL-PETFDAILL--------DAPCSGEGTVRKDPDALK--NWSPESNLEIAATQ-----RELIESAFHALKPGG 236 (470)
T ss_pred hhhhhhhc-hhhcCeEEE--------cCCCCCCcccccCHHHhh--hCCHHHHHHHHHHH-----HHHHHHHHHHcCCCc
Confidence 11112222 245677764 56664321 111111 12233333333333 348888888899999
Q ss_pred eEEEEecccC
Q 036835 207 RMFLTFIGRS 216 (242)
Q Consensus 207 ~lvl~~~g~~ 216 (242)
+||-++..-.
T Consensus 237 ~LVYSTCT~~ 246 (470)
T PRK11933 237 TLVYSTCTLN 246 (470)
T ss_pred EEEEECCCCC
Confidence 9999887643
No 159
>PRK03612 spermidine synthase; Provisional
Probab=92.57 E-value=0.34 Score=47.56 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=16.6
Q ss_pred CCccEEeeecCCCCcchHHHH
Q 036835 49 PGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~ 69 (242)
+++-+|+|+|||+|..+..+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 456899999999998765544
No 160
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=92.07 E-value=0.44 Score=43.48 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.2
Q ss_pred CCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 140 SRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 140 ~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.+.+|+|+|-+.+..++. .+-.+.++.-++-|+|||+|+++
T Consensus 221 ~~~fD~I~cRNvliyF~~-------------------------------~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-------------------------------TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcCCH-------------------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 578888888777666533 12233677778888999999873
No 161
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=92.05 E-value=0.68 Score=40.80 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 036835 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
.-|.|.+.+.++.. +...+|++.|||.|.+...+.+ + -.+|+-.|+...=-...|+....
T Consensus 28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~ 87 (226)
T PRK13256 28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTI 87 (226)
T ss_pred CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCC
Confidence 34666666554321 3457999999999999887762 1 15566666653222233332110
Q ss_pred hHhhhhh----cCCCCceeeccCCCcccccCC---CCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHH
Q 036835 112 FYKRIKK----DKFGPCFIAGMPGSFYERLFQ---SRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFL 184 (242)
Q Consensus 112 ~~~~l~~----~~~~~~f~~~vp~SFy~~l~p---~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~ 184 (242)
.+. +.. ......-+.-+-|+|++--.+ -+.+|+|+=..+++=| |+ +.+..|.
T Consensus 88 ~~~-~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp-----------------~~R~~Y~ 146 (226)
T PRK13256 88 NYE-VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL---PN-----------------DLRTNYA 146 (226)
T ss_pred Ccc-eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC---CH-----------------HHHHHHH
Confidence 000 000 000111122344577653211 2468888877777653 32 3344444
Q ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 185 EQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 185 ~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+ +-++=|+|||.+++.++-.
T Consensus 147 ~-----------~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 147 K-----------MMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred H-----------HHHHHhCCCcEEEEEEEec
Confidence 4 3344459999999999854
No 162
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.83 E-value=0.16 Score=45.27 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcccCceEEEEecccCCCC
Q 036835 190 DFSAFLSLRSEEIVSGGRMFLTFIGRSIAD 219 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~ 219 (242)
++..++-.-+.-|+|||.++++.=.-..++
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCC
Confidence 455588888999999999999876554443
No 163
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.15 E-value=1 Score=40.66 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=17.4
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
+..+++|+|.|.|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 46889999999999988775
No 164
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=89.82 E-value=0.57 Score=37.64 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHH
Q 036835 29 ISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~ 70 (242)
++++..++...++... ......+|+|+|||.|..|+.+..
T Consensus 6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH
Confidence 3455566666555331 124589999999999999998874
No 165
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=89.36 E-value=1.8 Score=38.03 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=80.8
Q ss_pred ccccCCCCcchHHHhhHHHHHHHHH---HHHHHHHHHHhhhccC--CCCccEEeeecCCCCcchHHHHHHHHHHHHHHHh
Q 036835 7 PCMNGGRGEASYAKNSDIQRTVISK---AWPFLEETIKDMFSSS--FPGCFNVADLGCSSGPNTFLVISKIIETIHKLYH 81 (242)
Q Consensus 7 ~~m~gg~g~~sY~~nS~~Q~~~~~~---~~~~l~~ai~~~~~~~--~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~ 81 (242)
+...|| -..|-..|.. .+...+ .--++-+.+++..... .+..++++|+||=+..|.+.-.
T Consensus 6 i~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~------------ 70 (219)
T PF11968_consen 6 IEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS------------ 70 (219)
T ss_pred HHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCccccc------------
Confidence 445555 6677666655 222222 2333333333332221 2346999999999988865321
Q ss_pred hhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCCCcccccCC---CCceeEEEeccceeecccC
Q 036835 82 QVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPGSFYERLFQ---SRSINFIHSSYSVHWLSKV 158 (242)
Q Consensus 82 ~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~SFy~~l~p---~~Svdl~~Ss~alhWLs~~ 158 (242)
+.+.|.--||-+.+ +. + .--+|.++-.| .+++|+|..|-.|.+ +
T Consensus 71 ------~~fdvt~IDLns~~--------~~----I------------~qqDFm~rplp~~~~e~FdvIs~SLVLNf---V 117 (219)
T PF11968_consen 71 ------GWFDVTRIDLNSQH--------PG----I------------LQQDFMERPLPKNESEKFDVISLSLVLNF---V 117 (219)
T ss_pred ------CceeeEEeecCCCC--------CC----c------------eeeccccCCCCCCcccceeEEEEEEEEee---C
Confidence 24667777886311 11 1 12278887665 779999999888776 5
Q ss_pred CCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCce-----EEEEecccCC
Q 036835 159 PENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGR-----MFLTFIGRSI 217 (242)
Q Consensus 159 P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~-----lvl~~~g~~~ 217 (242)
|.+.. + -..|++-.+-|+|+|. |++.++-+.-
T Consensus 118 P~p~~--------------------R-------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv 154 (219)
T PF11968_consen 118 PDPKQ--------------------R-------GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV 154 (219)
T ss_pred CCHHH--------------------H-------HHHHHHHHHHhCCCCccCcceEEEEeCchHh
Confidence 54210 1 1145555566699999 9999886653
No 166
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=88.47 E-value=0.43 Score=43.68 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
..++.+|++.. .+.-+|+|+|||||-.++...
T Consensus 149 ~lcl~~l~~~~--------~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 149 RLCLELLEKYV--------KPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHHHHHHHS--------STTSEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHhc--------cCCCEEEEeCCcHHHHHHHHH
Confidence 44555555552 123599999999998887654
No 167
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=87.86 E-value=6.9 Score=34.04 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=13.1
Q ss_pred ccEEeeecCCCCcchHH
Q 036835 51 CFNVADLGCSSGPNTFL 67 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~ 67 (242)
..+|+|||||.|..-+.
T Consensus 68 A~~VlDLGtGNG~~L~~ 84 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQ 84 (227)
T ss_pred ccceeeccCCchHHHHH
Confidence 34999999999965443
No 168
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=87.21 E-value=0.79 Score=40.41 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=17.2
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
+.-+|+|+|||+|..|..+.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~ 94 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL 94 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH
Confidence 45689999999999998776
No 169
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.74 E-value=0.82 Score=41.75 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+|+|+|||+|..++.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la 192 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA 192 (315)
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 4789999999999998776
No 170
>PRK04148 hypothetical protein; Provisional
Probab=86.45 E-value=2.3 Score=34.60 Aligned_cols=19 Identities=11% Similarity=-0.092 Sum_probs=14.1
Q ss_pred CccEEeeecCCCCc-chHHH
Q 036835 50 GCFNVADLGCSSGP-NTFLV 68 (242)
Q Consensus 50 ~~~~IaDlGCs~G~-nt~~~ 68 (242)
+..+|+|+|||+|. .+..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L 35 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL 35 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH
Confidence 35789999999996 44333
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.11 E-value=0.45 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.3
Q ss_pred ccEEeeecCCCCcchHHH
Q 036835 51 CFNVADLGCSSGPNTFLV 68 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~ 68 (242)
--+|+|+|||||..++..
T Consensus 46 g~~V~DlG~GTG~La~ga 63 (198)
T COG2263 46 GKTVLDLGAGTGILAIGA 63 (198)
T ss_pred CCEEEEcCCCcCHHHHHH
Confidence 457999999999998844
No 172
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=86.00 E-value=3.9 Score=36.82 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=64.4
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHhhhhhcCCCCceeecc
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~v 129 (242)
-.||+|-|.|||..|..+...+ . |+-+|+-=|.-. ||-..-+. +..+ .+ .+. +.-.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~v-g-------------~~G~v~tyE~r~-d~~k~A~~Nl~~~--~l-----~d~-v~~~ 151 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAV-G-------------PEGHVTTYEIRE-DFAKTARENLSEF--GL-----GDR-VTLK 151 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhh-C-------------CCceEEEEEecH-HHHHHHHHHHHHh--cc-----ccc-eEEE
Confidence 4899999999999999776433 1 234444334332 55444331 1111 12 111 2222
Q ss_pred CCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEE
Q 036835 130 PGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 p~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-|+..+-.++. .+|.++= ++|.+- +.|..-++.|+|||.++
T Consensus 152 ~~Dv~~~~~~~-~vDav~L--------Dmp~PW------------------------------~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 152 LGDVREGIDEE-DVDAVFL--------DLPDPW------------------------------NVLEHVSDALKPGGVVV 192 (256)
T ss_pred ecccccccccc-ccCEEEE--------cCCChH------------------------------HHHHHHHHHhCCCcEEE
Confidence 37888888877 8888876 666631 17889999999999998
Q ss_pred EEeccc
Q 036835 210 LTFIGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+-.+.-
T Consensus 193 ~y~P~v 198 (256)
T COG2519 193 VYSPTV 198 (256)
T ss_pred EEcCCH
Confidence 866544
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=84.72 E-value=1.2 Score=39.25 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=18.8
Q ss_pred CccEEeeecCCCCcchHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISK 71 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ 71 (242)
+.-+|+|+|||+|..|..+.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~ 50 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR 50 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh
Confidence 4579999999999999988753
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=84.58 E-value=1.3 Score=40.40 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCch
Q 036835 50 GCFNVADLGCSSGPNTFLVISK------------IIETIHKLYHQVNKKLPEFQVFLNDLPGNDF 102 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDF 102 (242)
..-+|+|+|||+|..|..+++. .++.+++.....+ ....++++..|....|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTEF 99 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhcc
Confidence 3468999999999999988764 3444444432211 12358888888755444
No 175
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.03 E-value=1 Score=35.54 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=32.0
Q ss_pred eeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 143 INFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 143 vdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|+|.+.+...| || ......-+.+|++.-+.-|+|||.|++=
T Consensus 2 yDvilclSVtkW--------------IH-------------Ln~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------IH-------------LNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHH--------------HH-------------HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEE--------------EE-------------ecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 588888888888 22 2233456888999999999999999993
No 176
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=82.79 E-value=1.4 Score=37.99 Aligned_cols=19 Identities=16% Similarity=-0.005 Sum_probs=15.7
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+|+|+|||+|..++..+
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3599999999998887544
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=82.34 E-value=0.73 Score=40.88 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=31.1
Q ss_pred CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 036835 50 GCFNVADLGCSSGPNTFLVISK------------IIETIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
..-+|+|+|||+|..|..+.+. .++.+++.... .+.+.++..|.-..+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD 88 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC
Confidence 3478999999999999988864 33333333211 234777777764433
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=81.57 E-value=15 Score=34.27 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=77.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
--+|+|+=++-|+=|..+.+.. . + ....|+-+|...+-...|..++.-+ +..++-+.-..
T Consensus 157 ge~VlD~cAAPGGKTthla~~~----~--------~-~~~iV~A~D~~~~Rl~~l~~nl~Rl-------G~~nv~~~~~d 216 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELM----E--------N-EGAIVVAVDVSPKRLKRLRENLKRL-------GVRNVIVVNKD 216 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhc----C--------C-CCceEEEEcCCHHHHHHHHHHHHHc-------CCCceEEEecc
Confidence 4899999999999999887333 1 1 1256899999865555555554321 22233333333
Q ss_pred CCcccccCCCC-ceeEEEeccceeecccCCCcccC----CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 131 GSFYERLFQSR-SINFIHSSYSVHWLSKVPENLET----NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 ~SFy~~l~p~~-Svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
++.+....+.+ .+|-|.- +.|++-.. |.+.-|-. ++..+.+.-.-|.. +|.+=.+=|+||
T Consensus 217 ~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~--~~~~i~~l~~lQ~~-----iL~~a~~~lk~G 281 (355)
T COG0144 217 ARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRR--TPEDIAELAKLQKE-----ILAAALKLLKPG 281 (355)
T ss_pred cccccccccccCcCcEEEE--------CCCCCCCcccccCccccccC--CHHHHHHHHHHHHH-----HHHHHHHhcCCC
Confidence 44444444444 4777755 77776442 11111211 12222222222333 777777888999
Q ss_pred ceEEEEecccCCC
Q 036835 206 GRMFLTFIGRSIA 218 (242)
Q Consensus 206 G~lvl~~~g~~~~ 218 (242)
|.|+-++.....+
T Consensus 282 G~LVYSTCS~~~e 294 (355)
T COG0144 282 GVLVYSTCSLTPE 294 (355)
T ss_pred CEEEEEccCCchh
Confidence 9999999877543
No 179
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=80.23 E-value=11 Score=34.22 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcc--CCCCccEEeeecCCCCcchHHHH
Q 036835 32 AWPFLEETIKDMFSS--SFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~--~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
+.+-|.+++.++... ...+..+|+==|||-|+.+..++
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHh
Confidence 344444555555442 13457999999999999987654
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=80.09 E-value=4.3 Score=36.15 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.6
Q ss_pred CccEEeeecCCCCcchHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISK 71 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ 71 (242)
++-+|+|+|+++|..|+.+.+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~a 100 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALA 100 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhh
Confidence 4679999999999999977633
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=80.06 E-value=5.4 Score=36.76 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 31 KAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
.+..+|++++..+.. ...+++|+|+=||+|+- +++++.+. ...+ .++.++|..
T Consensus 118 ~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys 170 (311)
T PF12147_consen 118 HLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYS 170 (311)
T ss_pred HHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCC
Confidence 456667777765533 25789999999999965 44555543 1113 688888876
No 182
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=79.52 E-value=12 Score=33.51 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=16.4
Q ss_pred ccEEeeecCCCCcchHHHHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~i 72 (242)
-.+|+|-|.|||..|..+...+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHh
Confidence 4899999999999999887555
No 183
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=77.19 E-value=8.4 Score=34.63 Aligned_cols=135 Identities=17% Similarity=0.271 Sum_probs=61.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeecc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|-.||+|..-+..+..+.+.-.+ .+..+++-.|.- +.......+ .-.++.... ...- ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~--~~~~~la~~---nl~l~~~~~-~~~~-i~ 110 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEID--PEAVALAKL---NLLLHGIDN-SNIN-II 110 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHH---HHHHTTHHC-BGCE-EE
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCc--HHHHHHHHh---hhhhhcccc-cccc-cc
Confidence 35689999999998876666444322111 136888877774 222222111 111111000 1000 12
Q ss_pred CCC-cccccCC-CCceeEEEec--ccee-ecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036835 130 PGS-FYERLFQ-SRSINFIHSS--YSVH-WLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 130 p~S-Fy~~l~p-~~Svdl~~Ss--~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 204 (242)
.++ |...... ...+|++++. +... |-.. .+..++ -|... .++.. ..|| .|+..--+-|++
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~---~~~~~~--~~~~~-~~~~~--------~~~~-~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDE---ELEKDE--RFKKY-FPPKS--------NAEY-AFIEHALSLLKP 175 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-STG---GGCTTC--CCTTC-SSSTT--------EHHH-HHHHHHHHTEEE
T ss_pred ccccccccccccccccccccCCCCccccccccc---cccccc--ccccc-CCCcc--------chhh-hhHHHHHhhccc
Confidence 223 3333333 6789999883 1122 3110 000000 01000 00100 1122 288888899999
Q ss_pred CceEEEEecc
Q 036835 205 GGRMFLTFIG 214 (242)
Q Consensus 205 GG~lvl~~~g 214 (242)
||++++.++.
T Consensus 176 ~G~~~~Ilp~ 185 (311)
T PF02384_consen 176 GGRAAIILPN 185 (311)
T ss_dssp EEEEEEEEEH
T ss_pred ccceeEEecc
Confidence 9999988874
No 184
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=76.95 E-value=3.9 Score=39.15 Aligned_cols=19 Identities=32% Similarity=0.266 Sum_probs=16.5
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 4689999999999988765
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=76.79 E-value=5.6 Score=34.64 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 036835 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
..|.|.+.+.++. .+..-+|+.-|||.|.....+. ++ -.+|+--|+...=-...|+....
T Consensus 22 ~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 22 PNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp STHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCTT
T ss_pred CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhcc
Confidence 4577777766532 2346799999999999877665 21 26677666653222222221110
Q ss_pred hHhhhhhc----CCCCceeeccCCCcccccCCC--CceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHH
Q 036835 112 FYKRIKKD----KFGPCFIAGMPGSFYERLFQS--RSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLE 185 (242)
Q Consensus 112 ~~~~l~~~----~~~~~f~~~vp~SFy~~l~p~--~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~ 185 (242)
....... ....--+.-+-|+||+ +-|. +++|+|+=..+++=| |+ +.++.|++
T Consensus 82 -~~~~~~~~~~~~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp-----------------~~R~~Ya~ 139 (218)
T PF05724_consen 82 -EPTVTSVGGFKRYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PP-----------------EMRERYAQ 139 (218)
T ss_dssp -EEECTTCTTEEEETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS----G-----------------GGHHHHHH
T ss_pred -CCCcccccceeeecCCceEEEEccccc-CChhhcCCceEEEEecccccC---CH-----------------HHHHHHHH
Confidence 0000000 0001112345568876 2222 358999988887653 32 33555655
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEEEec
Q 036835 186 QFQRDFSAFLSLRSEEIVSGGRMFLTFI 213 (242)
Q Consensus 186 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.-++=|+|||.+++.++
T Consensus 140 -----------~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 140 -----------QLASLLKPGGRGLLITL 156 (218)
T ss_dssp -----------HHHHCEEEEEEEEEEEE
T ss_pred -----------HHHHHhCCCCcEEEEEE
Confidence 33455799999544444
No 186
>PRK00536 speE spermidine synthase; Provisional
Probab=76.73 E-value=24 Score=31.81 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=59.0
Q ss_pred CCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHhhhhhcCCCCcee
Q 036835 48 FPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYKRIKKDKFGPCFI 126 (242)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~ 126 (242)
.|++-+|+=+|=|.|.....++ ..++ +|.+-|+-. ..-.+.+. +|.+...+.+ +++=+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvL----------------kh~~-~v~mVeID~-~Vv~~~k~~lP~~~~~~~D---pRv~l 128 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLF----------------KYDT-HVDFVQADE-KILDSFISFFPHFHEVKNN---KNFTH 128 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHH----------------CcCC-eeEEEECCH-HHHHHHHHHCHHHHHhhcC---CCEEE
Confidence 4778999999999997655544 1133 888888864 34444454 6654443322 22222
Q ss_pred eccCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 127 AGMPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 127 ~~vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.. ++... ..++.|+|+.=+ +++ ..|.+...+-|+|||
T Consensus 129 ~~----~~~~~-~~~~fDVIIvDs------------------------~~~--------------~~fy~~~~~~L~~~G 165 (262)
T PRK00536 129 AK----QLLDL-DIKKYDLIICLQ------------------------EPD--------------IHKIDGLKRMLKEDG 165 (262)
T ss_pred ee----hhhhc-cCCcCCEEEEcC------------------------CCC--------------hHHHHHHHHhcCCCc
Confidence 11 22211 235677777632 111 126677788889999
Q ss_pred eEEEE
Q 036835 207 RMFLT 211 (242)
Q Consensus 207 ~lvl~ 211 (242)
.|+..
T Consensus 166 i~v~Q 170 (262)
T PRK00536 166 VFISV 170 (262)
T ss_pred EEEEC
Confidence 99874
No 187
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=76.69 E-value=24 Score=31.65 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.0
Q ss_pred CccEEeeecCCCCcchH
Q 036835 50 GCFNVADLGCSSGPNTF 66 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~ 66 (242)
.+-+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 47899999999997544
No 188
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=76.34 E-value=3 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=15.6
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
.+...+|+|||.|-..-.+.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCceEEccCCchHHHHHHH
Confidence 57889999999996655443
No 189
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.07 E-value=35 Score=32.17 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=31.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
+.+.|+|||.+.|..=..+ |+++.++. ..+|.+.++--+.|...
T Consensus 110 ~~vHIID~~i~~G~QW~~L----iqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSL----IQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred cceEEEeccCCcchHHHHH----HHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 5899999999999654444 46555542 34678999999997543
No 190
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=74.96 E-value=7.4 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcccCceEEEEe
Q 036835 189 RDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
.|+..-|..+..+|++|-++| ++
T Consensus 135 ~~l~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARII-ST 157 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EC
Confidence 466667888999999876654 44
No 191
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=74.83 E-value=11 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=16.6
Q ss_pred CccEEeeecCCCCcchHHHHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIE 74 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~ 74 (242)
.-.+|+-||.|+|.. ..-++.|+.
T Consensus 73 ~gskVLYLGAasGTT-VSHvSDIvg 96 (229)
T PF01269_consen 73 PGSKVLYLGAASGTT-VSHVSDIVG 96 (229)
T ss_dssp TT-EEEEETTTTSHH-HHHHHHHHT
T ss_pred CCCEEEEecccCCCc-cchhhhccC
Confidence 357999999999964 445556644
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=73.73 E-value=7.9 Score=34.92 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=63.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHH------------HHHHHHHhhhcCCCCceEEEecCCCCCchHHHh------hcCchh
Q 036835 51 CFNVADLGCSSGPNTFLVISKII------------ETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF------ESLPDF 112 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii------------~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf------~~l~~~ 112 (242)
.-+|+|+|+|.|..|..+++..- ..++++. .....++|+..|--.=||..++ .+||=.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 58999999999999999887643 2333321 1234699999998777888754 333310
Q ss_pred H-hh----h-hhcCCCCceeeccCCCcccccC-CCCceeEEEeccceeecc
Q 036835 113 Y-KR----I-KKDKFGPCFIAGMPGSFYERLF-QSRSINFIHSSYSVHWLS 156 (242)
Q Consensus 113 ~-~~----l-~~~~~~~~f~~~vp~SFy~~l~-p~~Svdl~~Ss~alhWLs 156 (242)
- .. + .........+.++-+-|-+|++ .++|=+.+.-+-.+||.-
T Consensus 107 Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~ 157 (259)
T COG0030 107 ISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYA 157 (259)
T ss_pred ccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheE
Confidence 0 01 1 1111112456667777778888 666666666655666544
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=72.72 E-value=4.9 Score=38.03 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=41.4
Q ss_pred CCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceE
Q 036835 12 GRGEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQ 91 (242)
Q Consensus 12 g~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~q 91 (242)
..++..|+-|...-+.+...+...+... ....+|+|++||+|.-++.+.... +.-+
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~~---------~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~ 83 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAFGPK---------LPRESVLDALSASGIRGIRYALET---------------GVEK 83 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHHHhh---------cCCCEEEECCCcccHHHHHHHHHC---------------CCCE
Confidence 3456788888777666555554443210 023689999999999998875322 1246
Q ss_pred EEecCCC
Q 036835 92 VFLNDLP 98 (242)
Q Consensus 92 v~~nDLp 98 (242)
|+.||.-
T Consensus 84 V~a~Din 90 (382)
T PRK04338 84 VTLNDIN 90 (382)
T ss_pred EEEEeCC
Confidence 8888885
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=72.35 E-value=5.1 Score=37.62 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=16.2
Q ss_pred cEEeeecCCCCcchHHHH
Q 036835 52 FNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~ 69 (242)
.+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999998776
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=71.42 E-value=4.9 Score=34.05 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=16.6
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+++|++||+|..++.++
T Consensus 50 g~~vLDLfaGsG~lglea~ 68 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEAL 68 (189)
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4689999999999988776
No 196
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=71.34 E-value=13 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.1
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~i 72 (242)
++-+|+|+|.+.|..|+.+...+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhC
Confidence 57899999999999999888554
No 197
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=69.43 E-value=7.3 Score=37.03 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~ 69 (242)
..+|+|+|||+|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999765
No 198
>PLN02823 spermine synthase
Probab=69.17 E-value=15 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.3
Q ss_pred CCccEEeeecCCCCcchHHHH
Q 036835 49 PGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~ 69 (242)
+++-+|+.+|+|.|.....++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 456799999999997765444
No 199
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=69.17 E-value=5.8 Score=35.45 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.2
Q ss_pred CCCccEEeeecCCCCcchHHHH
Q 036835 48 FPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
..+.-+++|+|.|||..|..++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lL 98 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLL 98 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHH
Confidence 3567899999999999999877
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=66.39 E-value=9.2 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.3
Q ss_pred cEEeeecCCCCcchHHHHH
Q 036835 52 FNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~ 70 (242)
.+|+|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999996654
No 201
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=66.20 E-value=12 Score=35.36 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=64.2
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccCC
Q 036835 52 FNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMPG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp~ 131 (242)
..+.|.||+-|+-+..+ +.+++ .+ ..|+-.|++...-.........+++ .+.+ +-+
T Consensus 112 ~~~~~~~~g~~~~~~~i-----~~f~~-----------~~--~~Gl~~n~~e~~~~~~~~~~~~l~~----k~~~--~~~ 167 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYI-----AVFKK-----------AG--VVGLDNNAYEAFRANELAKKAYLDN----KCNF--VVA 167 (364)
T ss_pred ccccccCcCcCchhHHH-----HHhcc-----------CC--ccCCCcCHHHHHHHHHHHHHHHhhh----hcce--ehh
Confidence 37889999999886644 22221 11 1345555544322222222222222 2222 556
Q ss_pred CcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEE
Q 036835 132 SFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 132 SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|-...|++++.|++.+.-+.+.+.+ -.++|++++. .++|||+.+.-
T Consensus 168 ~~~~~~fedn~fd~v~~ld~~~~~~~---------------------~~~~y~Ei~r------------v~kpGG~~i~~ 214 (364)
T KOG1269|consen 168 DFGKMPFEDNTFDGVRFLEVVCHAPD---------------------LEKVYAEIYR------------VLKPGGLFIVK 214 (364)
T ss_pred hhhcCCCCccccCcEEEEeecccCCc---------------------HHHHHHHHhc------------ccCCCceEEeH
Confidence 88899999999999999766665333 1244555433 37999999988
Q ss_pred ecccCC
Q 036835 212 FIGRSI 217 (242)
Q Consensus 212 ~~g~~~ 217 (242)
...+..
T Consensus 215 e~i~~~ 220 (364)
T KOG1269|consen 215 EWIKTA 220 (364)
T ss_pred HHHHhh
Confidence 776544
No 202
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=64.84 E-value=9.8 Score=35.48 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.2
Q ss_pred cEEeeecCCCCcchHHHHH
Q 036835 52 FNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 52 ~~IaDlGCs~G~nt~~~~~ 70 (242)
.+|+|+|||+|..|+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQ 217 (353)
T ss_pred CcEEEEeccccHHHHHHHH
Confidence 3699999999999996654
No 203
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=56 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCccEEeeecCCCCcchHHHHHHH
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~i 72 (242)
|.++.|+|+|.|+|..+.-++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHH
Confidence 678999999999998765554443
No 204
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=62.30 E-value=14 Score=33.42 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=41.3
Q ss_pred ccCCCccc--ccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036835 128 GMPGSFYE--RLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 128 ~vp~SFy~--~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 205 (242)
.+.|+-|+ +=|+++|+|+++- +.|.- | -+.+.|.+.|-+.+-+.| +||
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiH--------DPPRf-------------S--~AgeLYseefY~El~RiL-------krg 238 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIH--------DPPRF-------------S--LAGELYSEEFYRELYRIL-------KRG 238 (287)
T ss_pred EecccHHHHHhcCCccccceEee--------CCCcc-------------c--hhhhHhHHHHHHHHHHHc-------CcC
Confidence 46778775 4579999999875 44431 1 123678887777777777 999
Q ss_pred ceEE--EEecccCCCC
Q 036835 206 GRMF--LTFIGRSIAD 219 (242)
Q Consensus 206 G~lv--l~~~g~~~~~ 219 (242)
|+|+ ++.+|....+
T Consensus 239 GrlFHYvG~Pg~ryrG 254 (287)
T COG2521 239 GRLFHYVGNPGKRYRG 254 (287)
T ss_pred CcEEEEeCCCCccccc
Confidence 9997 4444544443
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.79 E-value=5.8 Score=33.28 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.5
Q ss_pred CccEEeeecCCCCcchH
Q 036835 50 GCFNVADLGCSSGPNTF 66 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~ 66 (242)
+...++|+|||.|-.++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 45789999999998874
No 206
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=61.63 E-value=48 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhccC-C-CCccEEeeecCCCCcchHHHH
Q 036835 33 WPFLEETIKDMFSSS-F-PGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 33 ~~~l~~ai~~~~~~~-~-~~~~~IaDlGCs~G~nt~~~~ 69 (242)
+|+|++ +.++..+. . ...++|+==|||.|+.+.-+.
T Consensus 132 kpii~~-l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla 169 (369)
T KOG2798|consen 132 KPIIEE-LNSLFPSRGKERTKIRILVPGAGLGRLAYDLA 169 (369)
T ss_pred hhHHHH-HHhhCCCccccccCceEEecCCCchhHHHHHH
Confidence 455554 34443322 2 248999999999999987553
No 207
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.44 E-value=8.7 Score=32.51 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEE
Q 036835 131 GSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 ~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++-.++.|-++|+|+|.....+-.|. .+....+|+.+.+=|+|||+|-+
T Consensus 36 ~As~e~~F~dns~d~iyaeHvlEHlt-------------------------------~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 36 RASNESMFEDNSVDAIYAEHVLEHLT-------------------------------YDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hhhhhccCCCcchHHHHHHHHHHHHh-------------------------------HHHHHHHHHHHHHHhCcCcEEEE
Confidence 34448889999999887632222211 12334466667777799999999
Q ss_pred Eeccc
Q 036835 211 TFIGR 215 (242)
Q Consensus 211 ~~~g~ 215 (242)
+.+--
T Consensus 85 AvPdl 89 (185)
T COG4627 85 AVPDL 89 (185)
T ss_pred EcCCc
Confidence 88743
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=61.18 E-value=9.8 Score=35.85 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.5
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
.-.+++|+|||+|.-|-.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46899999999999997776
No 209
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=59.84 E-value=13 Score=32.47 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=16.5
Q ss_pred CccEEeeecCCCCcchHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~ 69 (242)
.--+|+|+||+.|.=|...+
T Consensus 69 p~~~VlD~G~APGsWsQVav 88 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAV 88 (232)
T ss_pred CCCEEEEccCCCChHHHHHH
Confidence 46899999999998776555
No 210
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=57.98 E-value=7.4 Score=36.07 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=14.8
Q ss_pred CccEEeeecCCCCcchHHH
Q 036835 50 GCFNVADLGCSSGPNTFLV 68 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~ 68 (242)
...+|+|+|||+|.-..++
T Consensus 114 ~~~~vLDIGtGag~I~~lL 132 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI 132 (321)
T ss_pred CCceEEEecCCccHHHHHH
Confidence 4689999999999555444
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=57.96 E-value=6.1 Score=30.90 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.5
Q ss_pred EEeeecCCCCcchHHHH
Q 036835 53 NVADLGCSSGPNTFLVI 69 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~ 69 (242)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999887665
No 212
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=57.43 E-value=11 Score=33.92 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=33.7
Q ss_pred CceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecccCC
Q 036835 141 RSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGRSI 217 (242)
Q Consensus 141 ~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
...|.+.|++||-=.++-++ .|. +=|+.-+.-|||||.|++...-..+
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~---------------------~y~--------~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD---------------------EYR--------RALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH---------------------HHH--------HHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred cchhhhhhhHHHHHHcCCHH---------------------HHH--------HHHHHHHHHcCCCcEEEEEEEcCce
Confidence 46999999999877554322 233 3566667888999999998885544
No 213
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=57.21 E-value=6 Score=34.90 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.8
Q ss_pred ccEEeeecCCCCcchHHH
Q 036835 51 CFNVADLGCSSGPNTFLV 68 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~ 68 (242)
..-+||||||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 478999999999876644
No 214
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=51.43 E-value=1.3e+02 Score=29.24 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=69.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec-
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG- 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~- 128 (242)
.--||+|.=++.|.-|..+. ++.+- +-.||-||--.|--..|-.++..+ ...++-++-
T Consensus 241 ~gERIlDmcAAPGGKTt~IA-----alMkn---------~G~I~AnD~n~~r~~~l~~n~~rl-------Gv~ntiv~n~ 299 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIA-----ALMKN---------TGVIFANDSNENRLKSLKANLHRL-------GVTNTIVSNY 299 (460)
T ss_pred CCCeecchhcCCCchHHHHH-----HHHcC---------CceEEecccchHHHHHHHHHHHHh-------CCCceEEEcc
Confidence 36899999999999996554 22221 478899998766666655555432 112222222
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccC--CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLET--NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~--nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 206 (242)
=+..|=+..||+ |+|=|. =+.|+.-+. +|+.......+ ......|.. .+ +..|-.--+-+++||
T Consensus 300 D~~ef~~~~~~~-~fDRVL--------LDAPCSGtgvi~K~~~vkt~k~-~~di~~~~~-LQ---r~LllsAi~lv~~GG 365 (460)
T KOG1122|consen 300 DGREFPEKEFPG-SFDRVL--------LDAPCSGTGVISKDQSVKTNKT-VKDILRYAH-LQ---RELLLSAIDLVKAGG 365 (460)
T ss_pred CcccccccccCc-ccceee--------ecCCCCCCcccccccccccchh-HHHHHHhHH-HH---HHHHHHHHhhccCCc
Confidence 122333344444 555442 244654321 23322211111 111111111 11 224445567789999
Q ss_pred eEEEEecccCC
Q 036835 207 RMFLTFIGRSI 217 (242)
Q Consensus 207 ~lvl~~~g~~~ 217 (242)
+||-++.....
T Consensus 366 vLVYSTCSI~~ 376 (460)
T KOG1122|consen 366 VLVYSTCSITV 376 (460)
T ss_pred EEEEEeeecch
Confidence 99999987654
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=49.23 E-value=21 Score=34.85 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=26.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
...+|+|.+||+|...+.++..+. ... .....+..++.-|.-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~----~~~---~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNE----EIN---YFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHH----hcC---Ccccceeeeeeechh
Confidence 468999999999998777765432 110 001124677777764
No 216
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=48.44 E-value=28 Score=31.45 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=66.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeeccC
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAGMP 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+-+|.|.-|..+.+.. . ..-.++-+|.-.+-...|-..+.. .+..++-+. -
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~-------------~-~~g~i~A~D~~~~Rl~~l~~~~~r-------~g~~~v~~~--~ 142 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELM-------------G-NKGEIVANDISPKRLKRLKENLKR-------LGVFNVIVI--N 142 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHT-------------T-TTSEEEEEESSHHHHHHHHHHHHH-------TT-SSEEEE--E
T ss_pred cccccccccCCCCceeeeeecc-------------c-chhHHHHhccCHHHHHHHHHHHHh-------cCCceEEEE--e
Confidence 4679999999999998776332 1 136788888874444433332221 111222222 1
Q ss_pred CCccccc---CCCCceeEEEeccceeecccCCCcccC----CCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 036835 131 GSFYERL---FQSRSINFIHSSYSVHWLSKVPENLET----NKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEI- 202 (242)
Q Consensus 131 ~SFy~~l---~p~~Svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL- 202 (242)
.+. .++ .+...+|.+.- ++|++-.. +.+.-|. .++..+ +.+. +-=...|+.-++-+
T Consensus 143 ~D~-~~~~~~~~~~~fd~Vlv--------DaPCSg~G~i~r~p~~~~~--~~~~~~-~~l~----~~Q~~iL~~a~~~~~ 206 (283)
T PF01189_consen 143 ADA-RKLDPKKPESKFDRVLV--------DAPCSGLGTIRRNPDIKWR--RSPEDI-EKLA----ELQREILDNAAKLLN 206 (283)
T ss_dssp SHH-HHHHHHHHTTTEEEEEE--------ECSCCCGGGTTTCTTHHHH--E-TTHH-HHHH----HHHHHHHHHHHHCEH
T ss_pred ecc-ccccccccccccchhhc--------CCCccchhhhhhccchhhc--cccccc-chHH----HHHHHHHHHHHHhhc
Confidence 222 222 33445777765 66664321 1111110 011111 1111 11234777777888
Q ss_pred ---ccCceEEEEecccCC
Q 036835 203 ---VSGGRMFLTFIGRSI 217 (242)
Q Consensus 203 ---~pGG~lvl~~~g~~~ 217 (242)
+|||+||-++..-..
T Consensus 207 ~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 207 IDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp HHBEEEEEEEEEESHHHG
T ss_pred ccccCCCeEEEEeccHHH
Confidence 899999999986643
No 217
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=48.32 E-value=24 Score=30.99 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=16.6
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~i 72 (242)
.+++|+|+|.|+|.++.-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 36999999999998877666444
No 218
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=47.59 E-value=12 Score=31.38 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.0
Q ss_pred EEeeecCCCCcchHHHHHH
Q 036835 53 NVADLGCSSGPNTFLVISK 71 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~~ 71 (242)
+|+|.-||.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999988754
No 219
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=44.30 E-value=18 Score=35.46 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHhhhccCCCCccEEeeecCCCCcchHHHHH
Q 036835 36 LEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 36 l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~ 70 (242)
|+++|.+....+.....-++|+|.|||-.|+..+.
T Consensus 52 i~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 52 IEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred HHHHhcccceeccCceEEEEEccCCccHHHHHHHH
Confidence 34444433222234578899999999999986654
No 220
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.51 E-value=27 Score=32.42 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 179 VCQAFLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 179 v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+...|..+-...+..+|.+--+-|+|||+|++..|-.
T Consensus 211 AiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 211 AIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred hheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 3445666778899999999999999999999988854
No 221
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=43.48 E-value=18 Score=31.16 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=18.7
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~i 72 (242)
++-+|+|+||++|..|+.+...+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 46799999999999999887433
No 222
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=43.06 E-value=51 Score=30.42 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 183 FLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 183 y~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+..+-...+.++|..-.+-|+|||+|++..|-.
T Consensus 211 ~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 211 YVNDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 344566779999999999999999999988743
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=42.85 E-value=51 Score=30.24 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 183 FLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 183 y~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+..+-...++.+|..-.+-|+|||+|++..|-.
T Consensus 207 ~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 207 EVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 444566779999999999999999999988754
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=40.66 E-value=65 Score=28.29 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHH--------HHHhhhc---CCCCceEEEecCCCCCc
Q 036835 33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISKIIETIH--------KLYHQVN---KKLPEFQVFLNDLPGND 101 (242)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~i~--------~~~~~~~---~~~~~~qv~~nDLp~ND 101 (242)
+.++.++|.+.-. -+++|||.|||..|+.....+ +.+. .+|.+.+ ...-+++|+-.|--.=|
T Consensus 21 lavF~~ai~~va~------d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~ 93 (252)
T COG4076 21 LAVFTSAIAEVAE------DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD 93 (252)
T ss_pred HHHHHHHHHHHhh------hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc
Confidence 3445555554432 678999999999999776553 2221 1222212 12246889999998888
Q ss_pred h
Q 036835 102 F 102 (242)
Q Consensus 102 F 102 (242)
|
T Consensus 94 f 94 (252)
T COG4076 94 F 94 (252)
T ss_pred c
Confidence 8
No 225
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=40.40 E-value=87 Score=28.90 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCccEEeeecCCCCcchHHHHHHH------------HHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 036835 49 PGCFNVADLGCSSGPNTFLVISKI------------IETIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~~~~~i------------i~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
..+-.|+|+|-|||..|..+++.. +..+.++...... ....||++.|.-..|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~-~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK-SGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-cceeeEEecccccCC
Confidence 457899999999999999888753 3444444321111 135999999876666
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=40.32 E-value=32 Score=32.58 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.4
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH
Q 036835 14 GEASYAKNSDIQRTVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVISK 71 (242)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ 71 (242)
++..||-.+.+-+...-.+...+.+... ....++|+|+-||+|.-++...+.
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e 65 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHE 65 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhh
Confidence 4678998888877765554444433211 112589999999999999988743
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=40.26 E-value=23 Score=31.90 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
+|.|++..+++... .+.+-+|+|+|||-=|.++..+
T Consensus 89 l~~Ld~fY~~if~~-~~~p~sVlDigCGlNPlalp~~ 124 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWM 124 (251)
T ss_dssp GGGHHHHHHHHCCC-S---SEEEEET-TTCHHHHHTT
T ss_pred hhhHHHHHHHHHhc-CCCCchhhhhhccCCceehhhc
Confidence 34455555544432 3458999999999988887544
No 228
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=37.71 E-value=94 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=23.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
..-+|+|.-||-|+.|+...+ . . ..-.|+-+|+-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak--------~------~-~~~~V~A~d~N 134 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAK--------H------G-KAKRVYAVDLN 134 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHH--------H------T--SSEEEEEES-
T ss_pred cceEEEEccCCccHHHHHHhh--------h------c-CccEEEEecCC
Confidence 357999999999999997652 1 0 12678888886
No 229
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=36.97 E-value=30 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCce
Q 036835 181 QAFLEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 181 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
+.+++-|..||..++...+.+|+.-|+
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778888999999999999998775
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.36 E-value=35 Score=31.33 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=18.8
Q ss_pred ccEEeeecCCCCcchHHHHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~i 72 (242)
..+++|.+||.|.-|..+++.+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC
Confidence 3699999999999999888554
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=35.59 E-value=64 Score=28.90 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcccCceEEEE
Q 036835 191 FSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+..+|..-.+=|+|||.|++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 456777778889999999985
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=35.49 E-value=61 Score=28.62 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=50.4
Q ss_pred CccEEeeecCCCCcchHHHHHHH------------HHHHHHHHhhhcCCCCceEEEecCCCCCchHH--------HhhcC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKI------------IETIHKLYHQVNKKLPEFQVFLNDLPGNDFNS--------IFESL 109 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~i------------i~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~--------lf~~l 109 (242)
+...|+|+|.|.|..|..+.+.. ++.++++.. ..+.++++..|--.=|... ++.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcCCceEEEEEe
Confidence 46899999999999999887543 344444321 3356999999986444443 33444
Q ss_pred chhHh-h-----hhhcCCC-CceeeccCCCcccccCC
Q 036835 110 PDFYK-R-----IKKDKFG-PCFIAGMPGSFYERLFQ 139 (242)
Q Consensus 110 ~~~~~-~-----l~~~~~~-~~f~~~vp~SFy~~l~p 139 (242)
|-... . +.....+ ...+..++..+++|+..
T Consensus 106 Py~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 106 PYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp TGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHT
T ss_pred cccchHHHHHHHhhcccccccceEEEEehhhhhhccC
Confidence 42110 0 1101221 34555678888888874
No 233
>smart00400 ZnF_CHCC zinc finger.
Probab=31.94 E-value=41 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.5
Q ss_pred ccEEeeecCCCCcchHHHHHHH
Q 036835 51 CFNVADLGCSSGPNTFLVISKI 72 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~i 72 (242)
.-..=++||+.|.+.+-+++.+
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH
Confidence 4556789999999998887655
No 234
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=31.35 E-value=24 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=22.4
Q ss_pred HHHHHHHHHH-HhhhccCCCCccEEeeecCCCCcchHHH
Q 036835 31 KAWPFLEETI-KDMFSSSFPGCFNVADLGCSSGPNTFLV 68 (242)
Q Consensus 31 ~~~~~l~~ai-~~~~~~~~~~~~~IaDlGCs~G~nt~~~ 68 (242)
.+.+.+.+++ ..+. -.--||+||||++|--.+..
T Consensus 100 dl~~~l~~e~~~~~~----~~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMS----FSGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHhhhheE----ecCceeEecCCcccccchhh
Confidence 4667777665 3221 12468999999999766644
No 235
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=30.43 E-value=55 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 183 FLEQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 183 y~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+..+-...+..+|..-.+-|+|||+|++..|-.
T Consensus 212 ~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 212 AVNDELEELERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHCTHHHHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HhccHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 333455679999999999999999999998843
No 236
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=29.81 E-value=58 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhh
Q 036835 175 SPPSVCQAFLEQFQRDFSAFLSLRSEE 201 (242)
Q Consensus 175 s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 201 (242)
.|..+.+.|.+||++||...|+.|..+
T Consensus 9 n~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 9 NPGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345678999999999999999988654
No 237
>PLN02476 O-methyltransferase
Probab=29.26 E-value=40 Score=30.68 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred CccEEeeecCCCCcchHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~ 70 (242)
++-+|+|+||++|..|+.+..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 467999999999999998763
No 238
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=28.78 E-value=80 Score=27.16 Aligned_cols=113 Identities=18% Similarity=0.117 Sum_probs=59.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHhhhhhcCCCCceeec--
Q 036835 51 CFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYKRIKKDKFGPCFIAG-- 128 (242)
Q Consensus 51 ~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-- 128 (242)
-.-|+|||-|||..|-.+++.= ..+...+.+ .=-| ||-.+.+.+-... + ++.|
T Consensus 49 glpVlElGPGTGV~TkaIL~~g------------v~~~~L~~i-E~~~--dF~~~L~~~~p~~---------~-ii~gda 103 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRG------------VRPESLTAI-EYSP--DFVCHLNQLYPGV---------N-IINGDA 103 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcC------------CCccceEEE-EeCH--HHHHHHHHhCCCc---------c-ccccch
Confidence 5689999999999887665322 111112222 2223 7766655443211 1 1111
Q ss_pred cCCCcccccCCCCceeEEEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCceE
Q 036835 129 MPGSFYERLFQSRSINFIHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vp~SFy~~l~p~~Svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.-+=|--.++..-+|-++| ++--|+= |..+.-+ +|+.--.-|.+||.+
T Consensus 104 ~~l~~~l~e~~gq~~D~viS--~lPll~~------------------P~~~~ia-----------ile~~~~rl~~gg~l 152 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVIS--GLPLLNF------------------PMHRRIA-----------ILESLLYRLPAGGPL 152 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEe--ccccccC------------------cHHHHHH-----------HHHHHHHhcCCCCeE
Confidence 11111233456677888888 2222221 1222233 344444557899999
Q ss_pred EEEecccCCCC
Q 036835 209 FLTFIGRSIAD 219 (242)
Q Consensus 209 vl~~~g~~~~~ 219 (242)
+.-..|.-+..
T Consensus 153 vqftYgp~s~v 163 (194)
T COG3963 153 VQFTYGPLSPV 163 (194)
T ss_pred EEEEecCCCcc
Confidence 99999865543
No 239
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=27.05 E-value=2.1e+02 Score=20.47 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHh-hhcCCCCceEEEecCCCCCc
Q 036835 59 CSSGPNTFLVISKIIETIHKLYH-QVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 59 Cs~G~nt~~~~~~ii~~i~~~~~-~~~~~~~~~qv~~nDLp~ND 101 (242)
|--|..+-..-..+++.|.+... .+|.++..+.|+++|.+..|
T Consensus 8 ~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~ 51 (69)
T COG1942 8 LFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPEN 51 (69)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhh
Confidence 44477777655555555555432 25667778999999999433
No 240
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=26.85 E-value=1.1e+02 Score=22.90 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=22.9
Q ss_pred EEeccceeecccCCCcccCCCcceEEcCCCChHHHHHHHHH----HHHHHHHHHHHHHhh
Q 036835 146 IHSSYSVHWLSKVPENLETNKRNIYITKSSPPSVCQAFLEQ----FQRDFSAFLSLRSEE 201 (242)
Q Consensus 146 ~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~Q----~~~D~~~FL~~Ra~E 201 (242)
.|++--|+||+++|-- ....+...|.++ -++-+..||++-+++
T Consensus 4 ~f~~kvlt~L~~~PLl-------------kN~~AVq~~~e~~~~~nqktL~vFl~ALa~~ 50 (81)
T PF09119_consen 4 KFKSKVLTWLGKIPLL-------------KNTNAVQKYVENQRVENQKTLQVFLEALAER 50 (81)
T ss_dssp -BTTB-EEEEE----T-------------T-HHHHHHHHHCS--S-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCccc-------------ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566779999999962 123344555543 445688898887765
No 241
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.18 E-value=48 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=15.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHH
Q 036835 50 GCFNVADLGCSSGPNTFLVISKII 73 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii 73 (242)
.+..-+|+||+.| ++..+.+.+
T Consensus 211 ~p~~f~d~gcgng--llvhllna~ 232 (529)
T KOG3790|consen 211 KPNKFVDIGCGNG--LLVHLLNAI 232 (529)
T ss_pred cccchhccccCch--hHHHHHHHH
Confidence 5788999999999 444444443
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=26.07 E-value=1e+02 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=18.9
Q ss_pred HHHHHHhhcccCceEEEEecccCCC
Q 036835 194 FLSLRSEEIVSGGRMFLTFIGRSIA 218 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
.+....+-++|||.+++........
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCC
Confidence 5566666689999999998876543
No 243
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=1.3e+02 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=29.7
Q ss_pred chHHHhhHHHH---HHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 036835 16 ASYAKNSDIQR---TVISKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTFLVI 69 (242)
Q Consensus 16 ~sY~~nS~~Q~---~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~~~ 69 (242)
.-|.+-+..+. ++.-+++.+.++. .....-.+|+||||+-|.=|..+.
T Consensus 14 D~Y~~~Ak~~gyRSRAa~KL~el~~k~------~i~~~~~~ViDLGAAPGgWsQva~ 64 (205)
T COG0293 14 DPYYKKAKKEGYRSRAAYKLLELNEKF------KLFKPGMVVVDLGAAPGGWSQVAA 64 (205)
T ss_pred CHHHHHHhhccccchHHHHHHHHHHhc------CeecCCCEEEEcCCCCCcHHHHHH
Confidence 34555555543 3344455555544 123456899999999999877655
No 244
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.59 E-value=40 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=27.1
Q ss_pred EeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCc
Q 036835 54 VADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP 110 (242)
Q Consensus 54 IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~ 110 (242)
|||+||=+|...+.+++ ....-.++..|+-...+...-.++.
T Consensus 1 vaDIGtDHgyLpi~L~~---------------~~~~~~~ia~DI~~gpL~~A~~~i~ 42 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLK---------------NGKAPKAIAVDINPGPLEKAKENIA 42 (205)
T ss_dssp EEEET-STTHHHHHHHH---------------TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHh---------------cCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 79999999998887662 1133567777776655555544443
No 245
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.28 E-value=1.5e+02 Score=19.95 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHHHHHHHHhh-hcCCCCceEEEecCCCC
Q 036835 62 GPNTFLVISKIIETIHKLYHQ-VNKKLPEFQVFLNDLPG 99 (242)
Q Consensus 62 G~nt~~~~~~ii~~i~~~~~~-~~~~~~~~qv~~nDLp~ 99 (242)
|. |-.-.+.+++.|.+...+ .+.+...+.|+++|.|.
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~ 48 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPE 48 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCh
Confidence 44 454555555555554332 45566679999999993
No 246
>PRK13699 putative methylase; Provisional
Probab=24.01 E-value=88 Score=27.25 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcccCceEEE
Q 036835 192 SAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 192 ~~FL~~Ra~EL~pGG~lvl 210 (242)
..+++.-.+-|+|||.|++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 3566777778999999886
No 247
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.52 E-value=80 Score=26.68 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=35.2
Q ss_pred cccccCCCCcchHHHhhHHHHHHHHH-HHHH---HHHHHHhhhccCCC-CccEEeeecCCCCcchHH
Q 036835 6 VPCMNGGRGEASYAKNSDIQRTVISK-AWPF---LEETIKDMFSSSFP-GCFNVADLGCSSGPNTFL 67 (242)
Q Consensus 6 ~~~m~gg~g~~sY~~nS~~Q~~~~~~-~~~~---l~~ai~~~~~~~~~-~~~~IaDlGCs~G~nt~~ 67 (242)
.+...||.|-.-|+--+.+-+-++.+ ..|. -.+.+..+..-... ...+.+|+|.|.|+--+.
T Consensus 23 l~~aagg~gla~sav~a~fvaPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVla 89 (199)
T KOG4058|consen 23 LLQAAGGSGLAASAVWALFVAPAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLA 89 (199)
T ss_pred HHHhccchhHHHHHHHHHHhhHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehh
Confidence 34556777877777666665444443 1222 22333333221112 348999999999986543
No 248
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=21.82 E-value=2.6e+02 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeccc
Q 036835 185 EQFQRDFSAFLSLRSEEIVSGGRMFLTFIGR 215 (242)
Q Consensus 185 ~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
.++.+|+...+...-+=|+|||.+++++..+
T Consensus 309 ~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 309 FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 5677888889999999999999999977654
No 249
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=21.54 E-value=2.2e+02 Score=24.02 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=21.4
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 036835 53 NVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
+|+|+|+|-|-=.+.+. |+. |+.++++-|=-
T Consensus 51 ~~lDiGSGaGfPGipLa--I~~-------------p~~~~~LvEs~ 81 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA--IAR-------------PDLQVTLVESV 81 (184)
T ss_dssp EEEEETSTTTTTHHHHH--HH--------------TTSEEEEEESS
T ss_pred eEEecCCCCCChhHHHH--HhC-------------CCCcEEEEeCC
Confidence 89999999997766442 211 56777776653
No 250
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=1.8e+02 Score=27.70 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=32.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC
Q 036835 50 GCFNVADLGCSSGPNTFLVISKIIETIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL 109 (242)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l 109 (242)
.--+|+|+=.|-|.-|+.+++.+ .+. .. .-.|.-||.-..--+.|-..+
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal----~~~------~~-~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEAL----HKD------PT-RGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHH----hcC------CC-CCeeEecccCHHHHHHHHHHH
Confidence 35899999999999999887444 322 11 247888888654444444443
No 251
>PHA03297 envelope glycoprotein L; Provisional
Probab=21.23 E-value=27 Score=29.12 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=37.0
Q ss_pred CCccEEeeecCCCCcchH------HHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC----CchHHH
Q 036835 49 PGCFNVADLGCSSGPNTF------LVISKIIETIHKLYHQVNKKLPEFQVFLNDLPG----NDFNSI 105 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~------~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~----NDFn~l 105 (242)
.++-||++-.||+|+-.- -.++++...+....-+..+++||.-+.+.|-+. |.|-.+
T Consensus 38 gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvvi 104 (185)
T PHA03297 38 GEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAVI 104 (185)
T ss_pred CCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHHH
Confidence 468999999999998532 234444444333222234688999999999653 555543
No 252
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=20.39 E-value=4.2e+02 Score=20.67 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecC
Q 036835 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGC 59 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGC 59 (242)
..+..-+.+.+..+..+..+....+.||||
T Consensus 24 ~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl 53 (133)
T TIGR03357 24 EQLRESIRRHLERLLNTRRGSCASLPDYGL 53 (133)
T ss_pred HHHHHHHHHHHHHHHccCCCccccccccCC
Confidence 344455555666666655567889999999
No 253
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=20.27 E-value=1.3e+02 Score=27.92 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.1
Q ss_pred EEeeecCCCCcchHHHHH
Q 036835 53 NVADLGCSSGPNTFLVIS 70 (242)
Q Consensus 53 ~IaDlGCs~G~nt~~~~~ 70 (242)
+|+|+=||+|..|+.+.+
T Consensus 199 ~vlDlycG~G~fsl~la~ 216 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK 216 (352)
T ss_dssp EEEEES-TTTCCHHHHHC
T ss_pred cEEEEeecCCHHHHHHHh
Confidence 799999999999998754
Done!