BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036837
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
MA+ G ++ PGP P PVIGN+L+ G K KSL NL+K++G + +L GL VV+
Sbjct: 1 MAKKTSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVL 60
Query: 60 SSPSMAKAIL 69
K L
Sbjct: 61 HGYEAVKEAL 70
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
MA+ G ++ PGP P PVIGN+L+ K KSL NL+KI+G + +L GL VV+
Sbjct: 1 MAKKTSSGRGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVL 60
Query: 60 SSPSMAKAIL 69
+ K L
Sbjct: 61 HGYEVVKEAL 70
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
MA+ GR PGP P PVIGN+L+ G K KSL NL+K++G + +L GL VV+
Sbjct: 1 MAKKTSSKGRP--PGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVL 58
Query: 60 SSPSMAKAIL 69
K L
Sbjct: 59 HGYEAVKEAL 68
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVS 60
MA+ G + PGP +P+IG++L G PH +L+ +++ +G ++ +R+G VV+S
Sbjct: 1 MAKKTSSKGLKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLS 60
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 14 PGPKPYPVIGNLLE---PGG--KPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAI 68
PGP +P++G+LLE GG K H +LA K +G+I ++LG +V + SPS+ +A+
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 69 LK 70
+
Sbjct: 87 YR 88
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 42.7 bits (99), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
MA+ G+ + PGP P+P+IGN+L+ K KSL ++ +G + ++ LG+ TVV+
Sbjct: 1 MAKKTSSKGK-LPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVL 59
Query: 60 SSPSMAKAIL 69
K L
Sbjct: 60 HGYEAVKEAL 69
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic
Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVV 58
PGP P P+IGN+L+ K KS N +K++G + ++ G+ VV
Sbjct: 13 PGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVV 58
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between
Alpha- Naphthoflavone And Human Cytochrome P450 1b1
(Cyp1b1)
Length = 507
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 14 PGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVS 60
PGP +P+IGN G H S A L + +G + +RLG VV++
Sbjct: 12 PGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLN 58
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In
Complex With Alpha-Naphthoflavone
Length = 495
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 9 GRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVS 60
G + P P +P++G++L G PH +L+ +++ +G ++ +R+G +V+S
Sbjct: 14 GLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLS 65
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 PVIGNL--LEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69
P++G+L L G H + L K +G I S+R+G TTV+V +AK +L
Sbjct: 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVL 68
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 14 PGPKPYPVIGNL--LEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71
PGP P P+IGNL LE P KS L + G + +L +G VV+ K L +
Sbjct: 13 PGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLD 71
Query: 72 Y 72
Y
Sbjct: 72 Y 72
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 32.3 bits (72), Expect = 0.073, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69
PGP P P IGN L+ + + SL +++ +G + ++ LG VV+ K L
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEAL 69
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A
Closed Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A
Closed Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4
Covalently Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P PV+GNLL+ K +S L + +G + ++ LG VV+
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVL 59
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P PV+GNLL+ K +S L + +G + ++ LG VV+
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVL 59
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P PV+GNLL+ K +S L + +G + ++ LG VV+
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVL 59
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P PV+GNLL+ K +S L + +G + ++ LG VV+
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVL 59
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex
With Anti- Platelet Drug Clopidogrel
Length = 479
Score = 32.0 bits (71), Expect = 0.085, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P PV+GNLL+ K +S L + +G + ++ LG VV+
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVL 59
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6
L240cN297Q
Length = 476
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MARSGRLGGRQVRPGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
MA+ G+ + PGP P P IGN L+ + + SL +++ +G + ++ LG VV+
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVL 59
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6
N297qI300V
Length = 476
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P P IGN L+ + + SL +++ +G + ++ LG VV+
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVL 59
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P P IGN L+ + + SL +++ +G + ++ LG VV+
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVL 59
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P P IGN L+ + + SL +++ +G + ++ LG VV+
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVL 59
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN
COMPLEX WITH Pilocarpine
Length = 476
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 PGPKPYPVIGNLLEPGGKP-HKSLANLTKIHGRIMSLRLGLVTTVVV 59
PGP P P IGN L+ + + SL +++ +G + ++ LG VV+
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVL 59
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To
An Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To
An Inhibitor Ritonavir
Length = 485
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 14 PGPKPYPVIGNLLEPGGKPHKSLANLT----KIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69
PGP P P +GN+L HK K +G++ G + ++ P M K +L
Sbjct: 17 PGPTPLPFLGNILS----YHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 72
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 14 PGPKPYPVIGNLLEPGGKPHKSLANLT----KIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69
PGP P P +GN+L HK K +G++ G + ++ P M K +L
Sbjct: 18 PGPTPLPFLGNILS----YHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 73
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human
Cytochrome P450 3a4 And Desthiazolylmethyloxycarbonyl
Ritonavir
Length = 487
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 14 PGPKPYPVIGNLLEPGGKPHKSLANLT----KIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69
PGP P P +GN+L HK K +G++ G + ++ P M K +L
Sbjct: 19 PGPTPLPFLGNILS----YHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 74
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 32 PHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------YLRRKKI 78
PH + ++++G I SL LG ++TVV++ + K L + +++ K+
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 79 NDLL------GYVEEN---CPAGKAIGFGQAAFHTSLNLSSNTIFSNNLVD 120
LL G+V+ + + G+GQ +F + + T F N+ ++
Sbjct: 96 GGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFES--KILEETKFFNDAIE 144
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 32 PHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------YLRRKKI 78
PH + ++++G I SL LG ++TVV++ + K L + +++ K+
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 79 NDLL------GYVEEN---CPAGKAIGFGQAAFHTSLNLSSNTIFSNNLVD 120
LL G+V+ + + G+GQ +F + + T F N+ ++
Sbjct: 96 GGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFES--KILEETKFFNDAIE 144
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 14 PGPKPYPVIGNLLEPG-----GKPHKSLANLTKIH-GRIMSLRL 51
PGP+P P ++EPG G K AN+ K H R+ LR+
Sbjct: 294 PGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRI 337
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 56 TVVVSSPSMAKAILKNYLRRKKINDLLGYVEENCPAGKA----IGFGQAAFH---TSLNL 108
T+++S+ +M A+L+ + ++ +LLGY + C A +A I FG+ H T L+
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHK 71
Query: 109 SSNTIF 114
+ IF
Sbjct: 72 GTTYIF 77
>pdb|3B98|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B98|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B99|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
pdb|3B99|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
Length = 475
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 4 SGRLGGRQVRPGPKP------YPVIGNLLEPGGKPHKSLANLTKIHGRIMSLR-LGLVTT 56
S L GR+ R +P P +G+ LE G K L + + HG I ++R GL T
Sbjct: 6 SSVLYGRRTRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYIT 65
Query: 57 VVVSS 61
V++ S
Sbjct: 66 VLLDS 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,622,530
Number of Sequences: 62578
Number of extensions: 127142
Number of successful extensions: 342
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 41
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)