Query 036837
Match_columns 122
No_of_seqs 124 out of 1327
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 7.9E-23 1.7E-27 140.4 14.0 111 9-120 24-190 (489)
2 PLN03234 cytochrome P450 83B1; 99.8 2.2E-19 4.7E-24 124.5 13.5 115 6-120 23-192 (499)
3 PLN02966 cytochrome P450 83A1 99.8 5.2E-19 1.1E-23 122.7 13.9 114 7-120 25-193 (502)
4 PLN03112 cytochrome P450 famil 99.8 8.2E-19 1.8E-23 122.0 14.4 115 5-119 26-194 (514)
5 PTZ00404 cytochrome P450; Prov 99.8 4.3E-19 9.3E-24 122.5 12.2 113 7-119 25-188 (482)
6 PLN00110 flavonoid 3',5'-hydro 99.8 9.4E-19 2E-23 121.5 12.7 113 6-118 26-192 (504)
7 PLN02687 flavonoid 3'-monooxyg 99.8 2E-18 4.3E-23 120.2 14.3 112 7-119 30-195 (517)
8 PLN02655 ent-kaurene oxidase 99.8 1.2E-18 2.7E-23 119.9 13.1 108 13-120 1-165 (466)
9 PLN02971 tryptophan N-hydroxyl 99.8 1.9E-18 4.2E-23 120.9 13.8 111 8-118 54-221 (543)
10 PF00067 p450: Cytochrome P450 99.8 7.5E-19 1.6E-23 119.3 7.3 107 13-119 1-163 (463)
11 PLN02183 ferulate 5-hydroxylas 99.8 1.5E-17 3.2E-22 115.9 13.1 112 7-120 32-196 (516)
12 PLN02290 cytokinin trans-hydro 99.8 1.3E-18 2.8E-23 121.0 7.6 113 8-120 39-222 (516)
13 PLN02394 trans-cinnamate 4-mon 99.7 6.8E-17 1.5E-21 112.2 13.7 114 7-120 26-195 (503)
14 PLN03141 3-epi-6-deoxocathaste 99.7 2.3E-17 5E-22 113.3 10.9 113 7-119 3-167 (452)
15 PLN00168 Cytochrome P450; Prov 99.7 1E-16 2.2E-21 111.7 13.7 112 9-120 33-201 (519)
16 PLN03018 homomethionine N-hydr 99.7 1.2E-16 2.6E-21 111.7 13.2 110 10-119 39-205 (534)
17 PLN02500 cytochrome P450 90B1 99.7 1.1E-16 2.3E-21 110.9 10.6 113 7-119 34-198 (490)
18 KOG0158 Cytochrome P450 CYP3/C 99.7 1.8E-16 3.9E-21 108.9 10.0 115 6-121 26-196 (499)
19 PLN02196 abscisic acid 8'-hydr 99.7 3E-16 6.4E-21 108.1 9.2 113 6-118 30-188 (463)
20 PLN02936 epsilon-ring hydroxyl 99.7 1.7E-15 3.8E-20 105.0 12.0 107 14-120 15-177 (489)
21 PLN02774 brassinosteroid-6-oxi 99.7 6.9E-16 1.5E-20 106.3 8.5 112 8-119 28-186 (463)
22 PLN02169 fatty acid (omega-1)- 99.7 2.2E-15 4.7E-20 104.8 11.0 112 9-120 29-198 (500)
23 PLN03195 fatty acid omega-hydr 99.6 3.1E-15 6.7E-20 104.3 10.9 110 10-120 29-193 (516)
24 PLN02302 ent-kaurenoic acid ox 99.6 3.1E-15 6.8E-20 103.5 10.4 113 7-119 38-203 (490)
25 PLN02648 allene oxide synthase 99.6 1.2E-15 2.6E-20 105.4 7.0 113 8-120 14-194 (480)
26 PLN02738 carotene beta-ring hy 99.6 1.2E-14 2.6E-19 103.4 12.1 98 23-120 143-291 (633)
27 PLN02987 Cytochrome P450, fami 99.6 7.7E-15 1.7E-19 101.4 8.6 111 7-119 26-188 (472)
28 KOG0157 Cytochrome P450 CYP4/C 99.6 5.1E-14 1.1E-18 97.9 10.4 106 9-115 33-192 (497)
29 KOG0159 Cytochrome P450 CYP11/ 99.4 1.6E-12 3.5E-17 89.0 9.6 113 8-120 47-223 (519)
30 KOG0684 Cytochrome P450 [Secon 99.1 3.5E-10 7.5E-15 76.6 7.5 61 11-71 31-92 (486)
31 PLN02426 cytochrome P450, fami 99.0 2.9E-08 6.2E-13 69.6 11.9 101 18-120 48-204 (502)
32 COG2124 CypX Cytochrome P450 [ 97.1 0.0017 3.8E-08 44.8 5.9 83 33-120 25-163 (411)
33 KOG0114 Predicted RNA-binding 78.5 9.9 0.00021 21.5 8.9 64 6-71 7-76 (124)
34 PF13625 Helicase_C_3: Helicas 74.2 14 0.00031 21.3 4.9 40 30-71 74-113 (129)
35 PF09926 DUF2158: Uncharacteri 70.0 5.6 0.00012 19.4 2.1 17 43-59 3-19 (53)
36 PRK02302 hypothetical protein; 55.1 34 0.00073 18.7 4.3 33 39-71 22-54 (89)
37 PF13893 RRM_5: RNA recognitio 53.8 24 0.00052 16.6 4.1 33 37-69 2-38 (56)
38 PF02681 DUF212: Divergent PAP 53.6 14 0.00031 22.0 2.2 60 55-116 76-138 (141)
39 PF01707 Peptidase_C9: Peptida 52.6 14 0.0003 23.2 2.0 23 98-120 82-104 (202)
40 PRK02886 hypothetical protein; 50.6 41 0.00088 18.3 4.4 33 39-71 20-52 (87)
41 KOG1918 3-methyladenine DNA gl 45.5 48 0.001 21.6 3.6 55 62-116 77-131 (254)
42 PF14164 YqzH: YqzH-like prote 43.8 46 0.001 17.0 4.8 39 72-110 25-63 (64)
43 COG4471 Uncharacterized protei 37.2 73 0.0016 17.4 5.0 34 38-71 20-53 (90)
44 PF09902 DUF2129: Uncharacteri 36.7 66 0.0014 16.7 4.3 33 39-71 16-48 (71)
45 COG1707 ACT domain-containing 33.3 73 0.0016 19.8 3.0 39 30-68 154-197 (218)
46 PLN03134 glycine-rich RNA-bind 31.6 1.2E+02 0.0025 18.0 6.4 49 21-71 38-95 (144)
47 COG5475 Uncharacterized small 31.3 65 0.0014 15.9 2.1 17 43-59 7-23 (60)
48 PRK02240 GTP cyclohydrolase II 28.9 1.8E+02 0.0038 19.4 4.3 62 6-71 11-75 (254)
49 TIGR00603 rad25 DNA repair hel 27.0 2E+02 0.0044 22.4 4.9 42 31-72 92-133 (732)
50 PF12419 DUF3670: SNF2 Helicas 27.0 1.4E+02 0.0031 17.6 5.0 33 33-69 86-118 (141)
51 KOG4241 Mitochondrial ribosoma 26.7 68 0.0015 20.6 2.2 29 43-71 136-164 (245)
52 TIGR01661 ELAV_HUD_SF ELAV/HuD 26.5 2.1E+02 0.0046 19.4 6.5 48 20-69 272-328 (352)
53 KOG0107 Alternative splicing f 26.4 1.7E+02 0.0038 18.4 3.9 47 20-68 13-63 (195)
54 smart00362 RRM_2 RNA recogniti 26.2 84 0.0018 14.7 5.2 37 33-69 13-56 (72)
55 cd01646 RT_Bac_retron_I RT_Bac 25.6 1.3E+02 0.0029 17.8 3.3 53 11-69 53-106 (158)
56 PF07223 DUF1421: Protein of u 25.2 1E+02 0.0022 21.7 2.9 23 72-97 332-354 (358)
57 PF12979 DUF3863: Domain of Un 24.7 33 0.00071 22.8 0.6 37 33-69 79-115 (351)
58 KOG0109 RNA-binding protein LA 24.5 1.7E+02 0.0037 20.1 3.7 49 21-71 6-55 (346)
59 PRK10597 DNA damage-inducible 24.4 1.3E+02 0.0028 16.2 4.3 28 35-62 25-55 (81)
60 COG2047 Uncharacterized protei 23.7 2.2E+02 0.0049 18.7 4.5 24 48-71 184-207 (258)
61 COG1965 CyaY Protein implicate 23.2 1.1E+02 0.0025 17.3 2.4 28 44-71 36-63 (106)
62 PF09804 DUF2347: Uncharacteri 22.1 38 0.00083 22.7 0.5 34 29-62 157-194 (280)
63 TIGR01642 U2AF_lg U2 snRNP aux 21.9 3.1E+02 0.0068 19.8 5.8 37 34-70 434-482 (509)
64 smart00360 RRM RNA recognition 21.8 1.1E+02 0.0023 14.2 4.5 37 33-69 10-55 (71)
65 PF13877 RPAP3_C: Potential Mo 21.2 1.5E+02 0.0033 15.8 3.8 55 30-88 5-59 (94)
66 PF14605 Nup35_RRM_2: Nup53/35 20.3 1.2E+02 0.0027 14.4 4.7 35 33-67 14-51 (53)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=7.9e-23 Score=140.44 Aligned_cols=111 Identities=31% Similarity=0.551 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCceeeccCCCCCC-hHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH----------------
Q 036837 9 GRQVRPGPKPYPVIGNLLEPGGK-PHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN---------------- 71 (122)
Q Consensus 9 ~~~~~p~p~~~p~~g~~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~---------------- 71 (122)
+.++||||+++|++||++++... ++..+.++.++|||++.+|+|..++|+++|+++++|++.+
T Consensus 24 ~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~ 103 (489)
T KOG0156|consen 24 RRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK 103 (489)
T ss_pred CCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence 38899999999999999999665 8999999999999999999999999999999999999988
Q ss_pred ---------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHH
Q 036837 72 ---------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNT 112 (122)
Q Consensus 72 ---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~ 112 (122)
..+.++++.+++.+.+ ...+++||+.+.+..++.++|+++
T Consensus 104 ~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~ 182 (489)
T KOG0156|consen 104 YLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRM 182 (489)
T ss_pred HhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHH
Confidence 3445677777777776 222378999999999999999999
Q ss_pred HhcCCCCC
Q 036837 113 IFSNNLVD 120 (122)
Q Consensus 113 ~fG~~~~~ 120 (122)
+||.+++.
T Consensus 183 ~fG~rf~~ 190 (489)
T KOG0156|consen 183 LFGRRFEE 190 (489)
T ss_pred HhCCcccc
Confidence 99999985
No 2
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.83 E-value=2.2e-19 Score=124.45 Aligned_cols=115 Identities=22% Similarity=0.391 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCC-ChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-------------
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEPGG-KPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN------------- 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~------------- 71 (122)
.+++.+.||||+++|++||+..+.. ++..++.+++++||+++++++|+.++|+++||+++++|+.+
T Consensus 23 ~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~ 102 (499)
T PLN03234 23 TKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKG 102 (499)
T ss_pred cCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchh
Confidence 3455678999999999999987743 67788999999999999999999999999999999999975
Q ss_pred -----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHH
Q 036837 72 -----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 -----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~ 110 (122)
+.+.+.++++++.+.+.+..++++|+.+.+..+++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~ 182 (499)
T PLN03234 103 QQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVC 182 (499)
T ss_pred hhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHH
Confidence 223444556666665544556789999999999999999
Q ss_pred HHHhcCCCCC
Q 036837 111 NTIFSNNLVD 120 (122)
Q Consensus 111 ~~~fG~~~~~ 120 (122)
+++||.++++
T Consensus 183 ~~~fG~~~~~ 192 (499)
T PLN03234 183 RQAFGKRYNE 192 (499)
T ss_pred HHHhCCcccc
Confidence 9999998764
No 3
>PLN02966 cytochrome P450 83A1
Probab=99.82 E-value=5.2e-19 Score=122.72 Aligned_cols=114 Identities=26% Similarity=0.459 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCCceeeccCCC-CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEP-GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------- 71 (122)
++..+.||||+++|++|++..+ ..++...+.+|+++||+++++++++.+.|+++||+++++|+.+
T Consensus 25 ~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~ 104 (502)
T PLN02966 25 TKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGH 104 (502)
T ss_pred cCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccc
Confidence 3445679999999999999877 4468889999999999999999999999999999999999865
Q ss_pred ----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHH
Q 036837 72 ----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSN 111 (122)
Q Consensus 72 ----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~ 111 (122)
+.+.++++++++.+.+.+..++++|+.+++.++++|+|+.
T Consensus 105 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~ 184 (502)
T PLN02966 105 EFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCR 184 (502)
T ss_pred eeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHH
Confidence 2234556667777765544566899999999999999999
Q ss_pred HHhcCCCCC
Q 036837 112 TIFSNNLVD 120 (122)
Q Consensus 112 ~~fG~~~~~ 120 (122)
++||.+++.
T Consensus 185 ~~fG~~~~~ 193 (502)
T PLN02966 185 QAFGKKYNE 193 (502)
T ss_pred HHhCCccCc
Confidence 999998764
No 4
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.82 E-value=8.2e-19 Score=121.99 Aligned_cols=115 Identities=28% Similarity=0.471 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-------------
Q 036837 5 GRLGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN------------- 71 (122)
Q Consensus 5 ~~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~------------- 71 (122)
+.+++.+.||||+++|++||+..+..+++..+.+++++||+++++++++.+.++++||+++++|+.+
T Consensus 26 ~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~ 105 (514)
T PLN03112 26 SMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLA 105 (514)
T ss_pred cccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCccc
Confidence 4556667899999999999998876667888999999999999999999999999999999999965
Q ss_pred -----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHH
Q 036837 72 -----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 -----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~ 110 (122)
+.+.++++.+++.+.+....++++|+.+.+.++++|+++
T Consensus 106 ~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~ 185 (514)
T PLN03112 106 AVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVT 185 (514)
T ss_pred ceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHH
Confidence 112233455555554433346789999999999999999
Q ss_pred HHHhcCCCC
Q 036837 111 NTIFSNNLV 119 (122)
Q Consensus 111 ~~~fG~~~~ 119 (122)
+++||.++.
T Consensus 186 ~~~fG~~~~ 194 (514)
T PLN03112 186 RMLLGKQYF 194 (514)
T ss_pred HHHcCCccc
Confidence 999999863
No 5
>PTZ00404 cytochrome P450; Provisional
Probab=99.82 E-value=4.3e-19 Score=122.55 Aligned_cols=113 Identities=21% Similarity=0.363 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH---------------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN--------------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~--------------- 71 (122)
+.....+|||+++|++|++..+..+++..+.+++++||+++++++++.++|+++||+++++|+.+
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 104 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK 104 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence 44567789999999999998876678889999999999999999999999999999999999975
Q ss_pred ------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhc
Q 036837 72 ------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFS 115 (122)
Q Consensus 72 ------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG 115 (122)
+.+.+.+..+++.+.+....++++|+.+.+.++++|++++++||
T Consensus 105 ~~~~~~~l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG 184 (482)
T PTZ00404 105 HGTFYHGIVTSSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFN 184 (482)
T ss_pred eeccCCceeccChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777655445667999999999999999999999
Q ss_pred CCCC
Q 036837 116 NNLV 119 (122)
Q Consensus 116 ~~~~ 119 (122)
.+++
T Consensus 185 ~~~~ 188 (482)
T PTZ00404 185 EDIS 188 (482)
T ss_pred cccc
Confidence 9875
No 6
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.81 E-value=9.4e-19 Score=121.51 Aligned_cols=113 Identities=28% Similarity=0.472 Sum_probs=92.9
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------- 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------- 71 (122)
.....+.||||+++|++|++..+..+++..+.++.++||+++++++|+.+.|+++||+++++++.+
T Consensus 26 ~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~ 105 (504)
T PLN00110 26 PKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGA 105 (504)
T ss_pred hcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccch
Confidence 445567899999999999987765567889999999999999999999999999999999999975
Q ss_pred ----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHH
Q 036837 72 ----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSN 111 (122)
Q Consensus 72 ----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~ 111 (122)
+.+.+++..+++.+.+...+++++|+.+++..+++|+|++
T Consensus 106 ~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~ 185 (504)
T PLN00110 106 THLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQ 185 (504)
T ss_pred hhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHH
Confidence 1112334455555554444567899999999999999999
Q ss_pred HHhcCCC
Q 036837 112 TIFSNNL 118 (122)
Q Consensus 112 ~~fG~~~ 118 (122)
++||.++
T Consensus 186 ~~fg~~~ 192 (504)
T PLN00110 186 VILSRRV 192 (504)
T ss_pred HHhCCcc
Confidence 9999876
No 7
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.81 E-value=2e-18 Score=120.20 Aligned_cols=112 Identities=29% Similarity=0.502 Sum_probs=92.7
Q ss_pred CCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH---------------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN--------------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~--------------- 71 (122)
++..+.||||.++|++|++..+..+++..+.+|.++||+++++++|+.++++++||+++++++.+
T Consensus 30 ~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~ 109 (517)
T PLN02687 30 KHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAE 109 (517)
T ss_pred CCCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchh
Confidence 34456789999999999998876678889999999999999999999999999999999999865
Q ss_pred ---------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHH
Q 036837 72 ---------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNT 112 (122)
Q Consensus 72 ---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~ 112 (122)
+.+.+++.++++.+.+.. +++++|+.+++..+++|+++.+
T Consensus 110 ~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~t~dvi~~~ 188 (517)
T PLN02687 110 HMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH-GTAPVNLGQLVNVCTTNALGRA 188 (517)
T ss_pred hhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCceeHHHHHHHHHHHHHHHH
Confidence 222344556666665432 3568999999999999999999
Q ss_pred HhcCCCC
Q 036837 113 IFSNNLV 119 (122)
Q Consensus 113 ~fG~~~~ 119 (122)
+||.++.
T Consensus 189 ~fG~~~~ 195 (517)
T PLN02687 189 MVGRRVF 195 (517)
T ss_pred HhCcccc
Confidence 9998863
No 8
>PLN02655 ent-kaurene oxidase
Probab=99.81 E-value=1.2e-18 Score=119.93 Aligned_cols=108 Identities=25% Similarity=0.375 Sum_probs=87.8
Q ss_pred CCCCCCCceeeccCCCC-CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------------
Q 036837 13 RPGPKPYPVIGNLLEPG-GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------------- 71 (122)
Q Consensus 13 ~p~p~~~p~~g~~~~~~-~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------------- 71 (122)
||||+++|++||++++. .+++..+.+|+++||+++++++++.++++++||+++++|+.+
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999998874 457889999999999999999999999999999999999975
Q ss_pred ----------------------------------HHhHHHHHHHHHHHHHhCC--CCceeeHHHHHHHHHHHHHHHHHhc
Q 036837 72 ----------------------------------YLRRKKINDLLGYVEENCP--AGKAIGFGQAAFHTSLNLSSNTIFS 115 (122)
Q Consensus 72 ----------------------------------~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ii~~~~fG 115 (122)
+.+++.++.+++.+.+.+. .++++|+.+.+.++++|+++.++||
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 160 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG 160 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence 1112233444444443322 4568999999999999999999999
Q ss_pred CCCCC
Q 036837 116 NNLVD 120 (122)
Q Consensus 116 ~~~~~ 120 (122)
.+++.
T Consensus 161 ~~~~~ 165 (466)
T PLN02655 161 EDVES 165 (466)
T ss_pred ccccc
Confidence 98764
No 9
>PLN02971 tryptophan N-hydroxylase
Probab=99.80 E-value=1.9e-18 Score=120.89 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCCceeeccCCCCC-C-hHHHHHHHHHhcC-CeEEEecCCeeEEEecCHHHHHHHHHH-------------
Q 036837 8 GGRQVRPGPKPYPVIGNLLEPGG-K-PHKSLANLTKIHG-RIMSLRLGLVTTVVVSSPSMAKAILKN------------- 71 (122)
Q Consensus 8 ~~~~~~p~p~~~p~~g~~~~~~~-~-~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~------------- 71 (122)
++.+.||||+++|++||+..+.. . .+..+.++.++|| +++++++|+.++|+++||++++++|.+
T Consensus 54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~ 133 (543)
T PLN02971 54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA 133 (543)
T ss_pred CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence 34578999999999999877632 2 3567889999999 899999999999999999999999976
Q ss_pred -----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHH
Q 036837 72 -----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 -----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~ 110 (122)
....++++.+.+.+.+.+..++++|+.+.+.++++|+++
T Consensus 134 ~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 213 (543)
T PLN02971 134 QKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIK 213 (543)
T ss_pred hhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Confidence 111223334444444433445689999999999999999
Q ss_pred HHHhcCCC
Q 036837 111 NTIFSNNL 118 (122)
Q Consensus 111 ~~~fG~~~ 118 (122)
+++||.++
T Consensus 214 ~~~fG~~~ 221 (543)
T PLN02971 214 RLMFGTRT 221 (543)
T ss_pred HHHhCCcc
Confidence 99999986
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.78 E-value=7.5e-19 Score=119.28 Aligned_cols=107 Identities=27% Similarity=0.475 Sum_probs=90.5
Q ss_pred CCCCCCCceeeccCCCC--CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-------------------
Q 036837 13 RPGPKPYPVIGNLLEPG--GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN------------------- 71 (122)
Q Consensus 13 ~p~p~~~p~~g~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~------------------- 71 (122)
||||+++|++|++..+. ++++..+.+++++||+++++++++.+.++++||+++++|+.+
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 78999999999998874 567888999999999999999999999999999999999977
Q ss_pred -----------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcC
Q 036837 72 -----------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSN 116 (122)
Q Consensus 72 -----------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~ 116 (122)
+.+.+.++.+++.+.+....++++|+.+++..+++|++++++||.
T Consensus 81 ~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~ 160 (463)
T PF00067_consen 81 PFGGKGLFFSDGERWRRQRRLLAPAFSSKKILKLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGK 160 (463)
T ss_dssp HHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 122334556666666655444579999999999999999999999
Q ss_pred CCC
Q 036837 117 NLV 119 (122)
Q Consensus 117 ~~~ 119 (122)
+++
T Consensus 161 ~~~ 163 (463)
T PF00067_consen 161 DFG 163 (463)
T ss_dssp HHH
T ss_pred eee
Confidence 865
No 11
>PLN02183 ferulate 5-hydroxylase
Probab=99.77 E-value=1.5e-17 Score=115.88 Aligned_cols=112 Identities=30% Similarity=0.529 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH---------------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN--------------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~--------------- 71 (122)
.++.+.||||+++|++|++..+....+..+.+|+++||++|++++++.++|+++||+++++|+.+
T Consensus 32 ~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 111 (516)
T PLN02183 32 RRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAIS 111 (516)
T ss_pred cCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchh
Confidence 34467899999999999987764455678899999999999999999999999999999999975
Q ss_pred ----------------------HH----------------hHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHH
Q 036837 72 ----------------------YL----------------RRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTI 113 (122)
Q Consensus 72 ----------------------~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 113 (122)
.+ ..++++.+++.+.+ ..++++|+.+++.++++|++++++
T Consensus 112 ~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~~vi~~~~ 189 (516)
T PLN02183 112 YLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVRDEVDSMVRSVSS--NIGKPVNIGELIFTLTRNITYRAA 189 (516)
T ss_pred ccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh--cCCCcEeHHHHHHHHHHHHHHhHh
Confidence 00 01233444444432 246789999999999999999999
Q ss_pred hcCCCCC
Q 036837 114 FSNNLVD 120 (122)
Q Consensus 114 fG~~~~~ 120 (122)
||.+++.
T Consensus 190 fG~~~~~ 196 (516)
T PLN02183 190 FGSSSNE 196 (516)
T ss_pred hcCcccc
Confidence 9987653
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=99.77 E-value=1.3e-18 Score=121.03 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCCceeeccCCCC-------------------CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHH
Q 036837 8 GGRQVRPGPKPYPVIGNLLEPG-------------------GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAI 68 (122)
Q Consensus 8 ~~~~~~p~p~~~p~~g~~~~~~-------------------~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~i 68 (122)
...+.||||+++|++||+..+. .+....+.+|.++||+++++++|+.+.|+++||++++++
T Consensus 39 ~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~i 118 (516)
T PLN02290 39 MERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKEL 118 (516)
T ss_pred HHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHH
Confidence 3456799999999999986652 122235678999999999999999999999999999999
Q ss_pred HHH---------------------------------------------------HHhHHHHHHHHHHHHHhCCCC-ceee
Q 036837 69 LKN---------------------------------------------------YLRRKKINDLLGYVEENCPAG-KAIG 96 (122)
Q Consensus 69 l~~---------------------------------------------------~~~~~~~~~~~~~l~~~~~~~-~~~~ 96 (122)
+.+ +.+.++++++++.+.+.+..+ .++|
T Consensus 119 l~~~~~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd 198 (516)
T PLN02290 119 LTKYNTVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVE 198 (516)
T ss_pred HhcCCCCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 975 333455677777776543333 5899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 036837 97 FGQAAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 97 ~~~~~~~~~~~ii~~~~fG~~~~~ 120 (122)
+.+.+.++++|++++++||.+++.
T Consensus 199 ~~~~~~~~~~~vi~~~~fG~~~~~ 222 (516)
T PLN02290 199 IGEYMTRLTADIISRTEFDSSYEK 222 (516)
T ss_pred hHHHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999998753
No 13
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.75 E-value=6.8e-17 Score=112.20 Aligned_cols=114 Identities=27% Similarity=0.419 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCCCceeeccCCCCCC-hHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEPGGK-PHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------- 71 (122)
.++.+.||||++.|++|++..+..+ .+..+.+|+++||+++++++++.+.|+++||+++++++.+
T Consensus 26 ~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~ 105 (503)
T PLN02394 26 GKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVF 105 (503)
T ss_pred cCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchH
Confidence 3456789999999999998776433 5678899999999999999999999999999999999964
Q ss_pred ----------------------------------------HHhHHHHHHHHHHHHHhCC-CCceeeHHHHHHHHHHHHHH
Q 036837 72 ----------------------------------------YLRRKKINDLLGYVEENCP-AGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 ----------------------------------------~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ii~ 110 (122)
+.+.++++++++.+.+... .++.+++.+.+..+++|+++
T Consensus 106 ~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~ 185 (503)
T PLN02394 106 DIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMY 185 (503)
T ss_pred hHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHH
Confidence 2224455666666654322 24569999999999999999
Q ss_pred HHHhcCCCCC
Q 036837 111 NTIFSNNLVD 120 (122)
Q Consensus 111 ~~~fG~~~~~ 120 (122)
+++||.+++.
T Consensus 186 ~~~fG~~~~~ 195 (503)
T PLN02394 186 RMMFDRRFES 195 (503)
T ss_pred HHHhCCCccc
Confidence 9999998754
No 14
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.75 E-value=2.3e-17 Score=113.26 Aligned_cols=113 Identities=12% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCCCceeeccCCC-----CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH----------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEP-----GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN---------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~---------- 71 (122)
+++.+.||||.++|++|+++.+ ..+++.++.++.++||+||++++++.+.|+++||+++++++.+
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 3556788999999999998776 2467888999999999999999999999999999999999976
Q ss_pred -----------------------------HHh--------HHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHh
Q 036837 72 -----------------------------YLR--------RKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIF 114 (122)
Q Consensus 72 -----------------------------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~f 114 (122)
.+. .+.+.+.+..+.+....++++|+.+.+..++++++++++|
T Consensus 83 ~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 162 (452)
T PLN03141 83 KSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWRDDPPVLVQDETKKIAFEVLVKALI 162 (452)
T ss_pred hhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCCCEEhHHHHHHHHHHHHHHHHc
Confidence 000 1111122221212122456799999999999999999999
Q ss_pred cCCCC
Q 036837 115 SNNLV 119 (122)
Q Consensus 115 G~~~~ 119 (122)
|.+.+
T Consensus 163 G~~~~ 167 (452)
T PLN03141 163 SLEPG 167 (452)
T ss_pred CCCch
Confidence 98653
No 15
>PLN00168 Cytochrome P450; Provisional
Probab=99.74 E-value=1e-16 Score=111.74 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCceeeccCCCC---CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------
Q 036837 9 GRQVRPGPKPYPVIGNLLEPG---GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------- 71 (122)
Q Consensus 9 ~~~~~p~p~~~p~~g~~~~~~---~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------- 71 (122)
..+.||||+++|++|++..+. .+++..+.+|+++||+++++++|+.+.|+++||+++++++.+
T Consensus 33 ~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~ 112 (519)
T PLN00168 33 GRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASS 112 (519)
T ss_pred CCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccch
Confidence 346789999999999987552 346788899999999999999999999999999999999975
Q ss_pred ----------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHH
Q 036837 72 ----------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSN 111 (122)
Q Consensus 72 ----------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~ 111 (122)
+.+.++++++++.+.+....++.+|+.+.+..++.++++.
T Consensus 113 ~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~ 192 (519)
T PLN00168 113 RLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVL 192 (519)
T ss_pred hhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 2223445566666655433445689999999999999999
Q ss_pred HHhcCCCCC
Q 036837 112 TIFSNNLVD 120 (122)
Q Consensus 112 ~~fG~~~~~ 120 (122)
++||.++++
T Consensus 193 ~~fG~~~~~ 201 (519)
T PLN00168 193 MCFGERLDE 201 (519)
T ss_pred HHcCCCcCh
Confidence 999998753
No 16
>PLN03018 homomethionine N-hydroxylase
Probab=99.73 E-value=1.2e-16 Score=111.70 Aligned_cols=110 Identities=20% Similarity=0.360 Sum_probs=85.7
Q ss_pred CCCCCCCCCCceeeccCCCC-CChH-HHHHHHHHhc-CCeEEEecCCeeEEEecCHHHHHHHHHH---------------
Q 036837 10 RQVRPGPKPYPVIGNLLEPG-GKPH-KSLANLTKIH-GRIMSLRLGLVTTVVVSSPSMAKAILKN--------------- 71 (122)
Q Consensus 10 ~~~~p~p~~~p~~g~~~~~~-~~~~-~~~~~~~~~~-g~i~~~~~~~~~~v~i~~p~~~~~il~~--------------- 71 (122)
...||||+++|++|+++.+. ..+. ..+..+.++| |+++++++|+.++|+++||+++++++.+
T Consensus 39 ~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~ 118 (534)
T PLN03018 39 RQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIME 118 (534)
T ss_pred CCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhh
Confidence 45789999999999998763 2222 3455556665 7999999999999999999999999975
Q ss_pred ---------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHH
Q 036837 72 ---------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNT 112 (122)
Q Consensus 72 ---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~ 112 (122)
.+...++.++++.+.+.+..++++|+.+.+.++++|+++++
T Consensus 119 ~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 198 (534)
T PLN03018 119 TIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRM 198 (534)
T ss_pred hhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHH
Confidence 12223455677777654444567999999999999999999
Q ss_pred HhcCCCC
Q 036837 113 IFSNNLV 119 (122)
Q Consensus 113 ~fG~~~~ 119 (122)
+||.+++
T Consensus 199 ~fG~~~~ 205 (534)
T PLN03018 199 LFGRRHV 205 (534)
T ss_pred HhCCccc
Confidence 9999874
No 17
>PLN02500 cytochrome P450 90B1
Probab=99.71 E-value=1.1e-16 Score=110.94 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCceeeccCCC-----CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH----------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEP-----GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN---------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~---------- 71 (122)
....+.||||+++|++||+..+ ...+...+.+++++||+++++++|+.++|+++||+++++++.+
T Consensus 34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~ 113 (490)
T PLN02500 34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP 113 (490)
T ss_pred cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence 3445789999999999997533 1345677899999999999999999999999999999999965
Q ss_pred -----------------------------HHhHH--------HHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHh
Q 036837 72 -----------------------------YLRRK--------KINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIF 114 (122)
Q Consensus 72 -----------------------------~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~f 114 (122)
.+... .+.+.+..+.+....++++|+.+.+.++++|++++++|
T Consensus 114 ~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~vi~~~~f 193 (490)
T PLN02500 114 RSIGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWKENSTFSAQDEAKKFTFNLMAKHIM 193 (490)
T ss_pred hHHHHHhCcccccccCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCCCCEEehHHHHHHHHHHHHHHHh
Confidence 01111 11111111111123456799999999999999999999
Q ss_pred cCCCC
Q 036837 115 SNNLV 119 (122)
Q Consensus 115 G~~~~ 119 (122)
|.+.+
T Consensus 194 g~~~~ 198 (490)
T PLN02500 194 SMDPG 198 (490)
T ss_pred CCCCC
Confidence 98764
No 18
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=1.8e-16 Score=108.91 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCCceeeccCCCC--CChHHHH-HHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-----------
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEPG--GKPHKSL-ANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN----------- 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~~--~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~----------- 71 (122)
.++.++-.|+|+++|++||+..+. +...... ..|.++ |+++.++.+.+|.++|+||+++++|+.+
T Consensus 26 ~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~ 104 (499)
T KOG0158|consen 26 SYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRP 104 (499)
T ss_pred hhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCC
Confidence 456677889999999999998772 2233333 444444 9999999999999999999999999988
Q ss_pred ------------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHH
Q 036837 72 ------------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLS 109 (122)
Q Consensus 72 ------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii 109 (122)
+.+++.+.++++.+.+....++.+++.+.+.++|.|+|
T Consensus 105 ~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI 184 (499)
T KOG0158|consen 105 IYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVI 184 (499)
T ss_pred CcCCCCCcccccCchhccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHH
Confidence 56677888999999886543467899999999999999
Q ss_pred HHHHhcCCCCCC
Q 036837 110 SNTIFSNNLVDP 121 (122)
Q Consensus 110 ~~~~fG~~~~~~ 121 (122)
++++||.+.++.
T Consensus 185 ~~~AfG~~~~s~ 196 (499)
T KOG0158|consen 185 GSCAFGLDANSL 196 (499)
T ss_pred hHhhcccchhhh
Confidence 999999998764
No 19
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.68 E-value=3e-16 Score=108.15 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCceeeccCCC-CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-------------
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEP-GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN------------- 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~------------- 71 (122)
.....+.||||+++|++|++..+ ..+++.++.+++++||+++++++++.+.|+++||+++++++.+
T Consensus 30 ~~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~ 109 (463)
T PLN02196 30 SSTKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFPASK 109 (463)
T ss_pred CCCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCchHH
Confidence 33446678888889999998765 5678889999999999999999999999999999999999976
Q ss_pred --------------------------HHhHHHHHHHHHHHHHhC------CCCceeeHHHHHHHHHHHHHHHHHhcCCC
Q 036837 72 --------------------------YLRRKKINDLLGYVEENC------PAGKAIGFGQAAFHTSLNLSSNTIFSNNL 118 (122)
Q Consensus 72 --------------------------~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~ii~~~~fG~~~ 118 (122)
.+..+.++.+...+.+.+ -.++++|+.+++..+++|+++.++||.+.
T Consensus 110 ~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~fG~~~ 188 (463)
T PLN02196 110 ERMLGKQAIFFHQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLSIFGKDE 188 (463)
T ss_pred HHHcCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCeEEeHHHHHHHHHHHHHHHHcCCCC
Confidence 111222222333222211 12457999999999999999999999875
No 20
>PLN02936 epsilon-ring hydroxylase
Probab=99.67 E-value=1.7e-15 Score=104.98 Aligned_cols=107 Identities=25% Similarity=0.309 Sum_probs=88.6
Q ss_pred CCCCCCceeeccCCC-----CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH-----------------
Q 036837 14 PGPKPYPVIGNLLEP-----GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN----------------- 71 (122)
Q Consensus 14 p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~----------------- 71 (122)
.|-.+||++|..+.. .+..+..+.+|+++||+++++++++.++++++||+++++|+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~ 94 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFL 94 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHH
Confidence 456689999998776 3567788999999999999999999999999999999999864
Q ss_pred ------------------------------H----HhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcCC
Q 036837 72 ------------------------------Y----LRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSNN 117 (122)
Q Consensus 72 ------------------------------~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~~ 117 (122)
. .+.++++.+++.+.+....++++|+.+++.++++|+++.++||.+
T Consensus 95 ~~~~i~~~~g~~wk~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~ 174 (489)
T PLN02936 95 FGSGFAIAEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYN 174 (489)
T ss_pred hcCccccCCchHHHHHHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCC
Confidence 1 223345667777766544567899999999999999999999999
Q ss_pred CCC
Q 036837 118 LVD 120 (122)
Q Consensus 118 ~~~ 120 (122)
++.
T Consensus 175 ~~~ 177 (489)
T PLN02936 175 FDS 177 (489)
T ss_pred ccc
Confidence 874
No 21
>PLN02774 brassinosteroid-6-oxidase
Probab=99.65 E-value=6.9e-16 Score=106.31 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH----------------
Q 036837 8 GGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN---------------- 71 (122)
Q Consensus 8 ~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~---------------- 71 (122)
...+.||||+++|++||+..+..++..++.+++++||+++++++++.++++++||+++++++.+
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 107 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDI 107 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 4456788999999999987765667788999999999999999999999999999999999965
Q ss_pred -----------------------HHh--------HHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcCCCC
Q 036837 72 -----------------------YLR--------RKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSNNLV 119 (122)
Q Consensus 72 -----------------------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~~~~ 119 (122)
.+. .+.+.+.+..+.+....++++|+.+.+..++++++++++||.+.+
T Consensus 108 lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~ 186 (463)
T PLN02774 108 LGTCNIAAVHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWDGLKTIDIQEKTKEMALLSALKQIAGTLSK 186 (463)
T ss_pred hCccchhhcCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEeeHHHHHHHHHHHHHHHcCCCCh
Confidence 000 111112222222222334679999999999999999999998653
No 22
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.65 E-value=2.2e-15 Score=104.78 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCceeeccCCCC---CChHHHHHHHHHhcCCeEE---EecCCeeEEEecCHHHHHHHHHH-----------
Q 036837 9 GRQVRPGPKPYPVIGNLLEPG---GKPHKSLANLTKIHGRIMS---LRLGLVTTVVVSSPSMAKAILKN----------- 71 (122)
Q Consensus 9 ~~~~~p~p~~~p~~g~~~~~~---~~~~~~~~~~~~~~g~i~~---~~~~~~~~v~i~~p~~~~~il~~----------- 71 (122)
.++..|+|+++|++|++..+. ....+.+.+...+||..+. .|+|+.++++++||+++++||.+
T Consensus 29 ~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~ 108 (500)
T PLN02169 29 KPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEF 108 (500)
T ss_pred ccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHH
Confidence 344678999999999986552 2233445555556886655 67888999999999999999976
Q ss_pred ----------------------------HHh-------------HHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHH
Q 036837 72 ----------------------------YLR-------------RKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 ----------------------------~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~ 110 (122)
.+. .+.++.+++.+.+.+..++++|+.+.+.++|+|+|+
T Consensus 109 ~~~~~~~g~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~ 188 (500)
T PLN02169 109 KKIFDVLGEGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSS 188 (500)
T ss_pred HHHHHhhcCcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHH
Confidence 111 122344556665544456789999999999999999
Q ss_pred HHHhcCCCCC
Q 036837 111 NTIFSNNLVD 120 (122)
Q Consensus 111 ~~~fG~~~~~ 120 (122)
+++||.+.++
T Consensus 189 ~~~fG~~~~~ 198 (500)
T PLN02169 189 ILMTGYDPMS 198 (500)
T ss_pred hheeCCCccc
Confidence 9999998753
No 23
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.64 E-value=3.1e-15 Score=104.31 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=82.3
Q ss_pred CCCCCCCCCCceeeccCCCCCChHHHHHHHHHhc---CCeEEEecCCeeEEEecCHHHHHHHHHH---------------
Q 036837 10 RQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIH---GRIMSLRLGLVTTVVVSSPSMAKAILKN--------------- 71 (122)
Q Consensus 10 ~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~---g~i~~~~~~~~~~v~i~~p~~~~~il~~--------------- 71 (122)
.+.+|||+++|++|++..+..+ +..+.+|.++| |+++.+++++.+.++++||+++++|+.+
T Consensus 29 ~~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 107 (516)
T PLN03195 29 QRNRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM 107 (516)
T ss_pred ccccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence 3457899999999998654222 33456677777 8999999999999999999999999864
Q ss_pred ------------------------------------HH-hHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHh
Q 036837 72 ------------------------------------YL-RRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIF 114 (122)
Q Consensus 72 ------------------------------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~f 114 (122)
+. ..+.++.+.+.+.+....++++|+.+++..+++|+++.++|
T Consensus 108 ~~~~g~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~f 187 (516)
T PLN03195 108 EVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGF 187 (516)
T ss_pred HHHhcCeeeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHh
Confidence 11 12223344444443333467899999999999999999999
Q ss_pred cCCCCC
Q 036837 115 SNNLVD 120 (122)
Q Consensus 115 G~~~~~ 120 (122)
|.+++.
T Consensus 188 G~~~~~ 193 (516)
T PLN03195 188 GVEIGT 193 (516)
T ss_pred CCCccc
Confidence 998763
No 24
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.64 E-value=3.1e-15 Score=103.54 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCceeeccCCC-----CCChHHHHHHHHHhcCC--eEEEecCCeeEEEecCHHHHHHHHHH--------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEP-----GGKPHKSLANLTKIHGR--IMSLRLGLVTTVVVSSPSMAKAILKN-------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~--i~~~~~~~~~~v~i~~p~~~~~il~~-------- 71 (122)
....++||||.++|++|++..+ ..+++.++.+++++||+ ++++++++.+.++++||+++++|+.+
T Consensus 38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~~~f~~~~ 117 (490)
T PLN02302 38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDDDAFEPGW 117 (490)
T ss_pred cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCCCccccCC
Confidence 3445689999999999998755 24678889999999997 78999999999999999999999854
Q ss_pred ------------------------------HHh-HHHHHHHHHHHHH-------hCCCCceeeHHHHHHHHHHHHHHHHH
Q 036837 72 ------------------------------YLR-RKKINDLLGYVEE-------NCPAGKAIGFGQAAFHTSLNLSSNTI 113 (122)
Q Consensus 72 ------------------------------~~~-~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~ii~~~~ 113 (122)
.+. .+.++.+...+.+ ....++.+|+.+.+..++++++++++
T Consensus 118 ~~~~~~~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~~~v~~~~~~~~~~~~vi~~~~ 197 (490)
T PLN02302 118 PESTVELIGRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSKMGEIEFLTELRKLTFKIIMYIF 197 (490)
T ss_pred chhHHHHhccccccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEehHHHHHHHHHHHHHHHH
Confidence 111 1122222222211 11234569999999999999999999
Q ss_pred hcCCCC
Q 036837 114 FSNNLV 119 (122)
Q Consensus 114 fG~~~~ 119 (122)
||.+++
T Consensus 198 ~G~~~~ 203 (490)
T PLN02302 198 LSSESE 203 (490)
T ss_pred cCCCCh
Confidence 998764
No 25
>PLN02648 allene oxide synthase
Probab=99.62 E-value=1.2e-15 Score=105.45 Aligned_cols=113 Identities=8% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCCceeeccCCC-----CCChHHHHHHHHHhcCC-eEEEecCCeeE-------EEecCHHHHHHHHH----
Q 036837 8 GGRQVRPGPKPYPVIGNLLEP-----GGKPHKSLANLTKIHGR-IMSLRLGLVTT-------VVVSSPSMAKAILK---- 70 (122)
Q Consensus 8 ~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~-i~~~~~~~~~~-------v~i~~p~~~~~il~---- 70 (122)
.+.+.|||+.++|++|++..+ ..++..++.+..++||+ ||+.+++|.|. |+++||++++.++.
T Consensus 14 ~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~ 93 (480)
T PLN02648 14 LPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKV 93 (480)
T ss_pred CCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhc
Confidence 445678999999999999764 34557899999999999 99999988655 99999999999886
Q ss_pred -H--------------------------------------------------HHhHHHHHHHHHHHHHhCCCCceeeHHH
Q 036837 71 -N--------------------------------------------------YLRRKKINDLLGYVEENCPAGKAIGFGQ 99 (122)
Q Consensus 71 -~--------------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 99 (122)
+ +.+.+.+.++++.|......++++|+.+
T Consensus 94 ~~~~~~~~~~~~~~~l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~ 173 (480)
T PLN02648 94 DKRDVFTGTYMPSTAFTGGYRVLSYLDPSEPKHAKLKSFLFELLKSRHRRFIPEFRAAFAELFDTWEAELAKKGKAEFND 173 (480)
T ss_pred cccccceeeeccCccccCCceeeeecCCCCchHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 1 2334455666666644323455799999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 036837 100 AAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 100 ~~~~~~~~ii~~~~fG~~~~~ 120 (122)
.+.++++|++++++||.+.+.
T Consensus 174 ~~~~lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 174 PLDQMAFNFLCKALTGKDPSE 194 (480)
T ss_pred hHHHHHHHHHHHHHcCCCcch
Confidence 999999999999999987653
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.62 E-value=1.2e-14 Score=103.39 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=81.0
Q ss_pred eccCCC-CCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH------------------------------
Q 036837 23 GNLLEP-GGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN------------------------------ 71 (122)
Q Consensus 23 g~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~------------------------------ 71 (122)
|++..+ .+..+..+.+++++||+|+++++|+.+.++++||+.+++|+.+
T Consensus 143 G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~dge~w 222 (633)
T PLN02738 143 GSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIW 222 (633)
T ss_pred CcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCCcHHH
Confidence 444334 3456788899999999999999999999999999999999975
Q ss_pred --------------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcCCCCC
Q 036837 72 --------------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 72 --------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~~~~~ 120 (122)
+.+.++++.+++.+.+....++++|+.+.+..+++|+|+.++||.+++.
T Consensus 223 r~rRr~l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~ 291 (633)
T PLN02738 223 RVRRRAIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDS 291 (633)
T ss_pred HHHHHhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3445566777777776555677899999999999999999999998863
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.59 E-value=7.7e-15 Score=101.44 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCCceeeccCCCC-----CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH----------
Q 036837 7 LGGRQVRPGPKPYPVIGNLLEPG-----GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN---------- 71 (122)
Q Consensus 7 ~~~~~~~p~p~~~p~~g~~~~~~-----~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~---------- 71 (122)
..+.+.||||.++|++|+++.+. .+++.++.++.++||+++++++++.+.++++||+++++++.+
T Consensus 26 ~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~ 105 (472)
T PLN02987 26 YRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYP 105 (472)
T ss_pred cCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCc
Confidence 34456788999999999987652 457888899999999999999999999999999999999975
Q ss_pred ----------------------------HHhH-HH--------HHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHh
Q 036837 72 ----------------------------YLRR-KK--------INDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIF 114 (122)
Q Consensus 72 ----------------------------~~~~-~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~f 114 (122)
++.. .. +.+++....+ ..++++++.+.+.+++++++++++|
T Consensus 106 ~~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~t~~vi~~~~f 183 (472)
T PLN02987 106 GSISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLD--SWSSRVLLMEEAKKITFELTVKQLM 183 (472)
T ss_pred HHHHHHhCcccccccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH--hhccceehHHHHHHHHHHHHHHHHc
Confidence 1100 00 1111111111 1124699999999999999999999
Q ss_pred cCCCC
Q 036837 115 SNNLV 119 (122)
Q Consensus 115 G~~~~ 119 (122)
|.+.+
T Consensus 184 g~~~~ 188 (472)
T PLN02987 184 SFDPG 188 (472)
T ss_pred CCCCh
Confidence 98754
No 28
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.56 E-value=5.1e-14 Score=97.90 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCceeeccCCCC---CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH--------------
Q 036837 9 GRQVRPGPKPYPVIGNLLEPG---GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN-------------- 71 (122)
Q Consensus 9 ~~~~~p~p~~~p~~g~~~~~~---~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~-------------- 71 (122)
....+|||+++|++|++..+. .+...++.++..+||++++.|+++.+.++++||+.+++|+.+
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 356789999999999988773 245567788999999999999999999999999999999963
Q ss_pred --------------------------HHhHHHHHHHHHH-----------HHHhCCCCceeeHHHHHHHHHHHHHHHHHh
Q 036837 72 --------------------------YLRRKKINDLLGY-----------VEENCPAGKAIGFGQAAFHTSLNLSSNTIF 114 (122)
Q Consensus 72 --------------------------~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~~~~~~~ii~~~~f 114 (122)
.++.+.++.++.. +... ..+..+|+++.+.++|+|+|++++|
T Consensus 113 ~~~~lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~tld~i~~~~~ 191 (497)
T KOG0157|consen 113 LKPWLGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELA-ASGEEVDLQDLLKRLTLDIICKTAM 191 (497)
T ss_pred HHHHhcCccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCeEcHHHHHHHHHHHHHHHHhc
Confidence 2222333333322 2221 2333499999999999999999999
Q ss_pred c
Q 036837 115 S 115 (122)
Q Consensus 115 G 115 (122)
|
T Consensus 192 G 192 (497)
T KOG0157|consen 192 G 192 (497)
T ss_pred C
Confidence 9
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.43 E-value=1.6e-12 Score=89.01 Aligned_cols=113 Identities=22% Similarity=0.247 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCceeeccCCC----CCChHHHHHHHHHhcCCeEEEe-cCCeeEEEecCHHHHHHHHHH-----------
Q 036837 8 GGRQVRPGPKPYPVIGNLLEP----GGKPHKSLANLTKIHGRIMSLR-LGLVTTVVVSSPSMAKAILKN----------- 71 (122)
Q Consensus 8 ~~~~~~p~p~~~p~~g~~~~~----~~~~~~~~~~~~~~~g~i~~~~-~~~~~~v~i~~p~~~~~il~~----------- 71 (122)
++....|+|+.+|++|.+..+ ..+.++.....+++|||||+.. +|+...|++.||+.++.++.+
T Consensus 47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~~P~Rp~~~ 126 (519)
T KOG0159|consen 47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGKYPFRPLLI 126 (519)
T ss_pred CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCCCCCccccc
Confidence 445567899999999988733 3567888899999999999999 778889999999999999987
Q ss_pred ---------------------------------------------HHhHHHHHHHHHHHHHhCC---CCceeeHHHHHHH
Q 036837 72 ---------------------------------------------YLRRKKINDLLGYVEENCP---AGKAIGFGQAAFH 103 (122)
Q Consensus 72 ---------------------------------------------~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ 103 (122)
+..++..++++..+....+ ...+-|+.+.+.+
T Consensus 127 ~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~ 206 (519)
T KOG0159|consen 127 EPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYR 206 (519)
T ss_pred chhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 4446667788888877643 3346799999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 036837 104 TSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 104 ~~~~ii~~~~fG~~~~~ 120 (122)
++++.||.++||.+++.
T Consensus 207 wslEsi~~V~l~~rlG~ 223 (519)
T KOG0159|consen 207 WSLESICLVLLGTRLGL 223 (519)
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999999999999874
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=3.5e-10 Score=76.62 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=55.8
Q ss_pred CCCCCCC-CCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 11 QVRPGPK-PYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 11 ~~~p~p~-~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
..||.-. ++|++|+...+.+++.++++++.+|||+||++.++|+.+.++.+|+....++.+
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~ 92 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKA 92 (486)
T ss_pred CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcC
Confidence 4677644 579999999999999999999999999999999999999999999999999866
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=98.96 E-value=2.9e-08 Score=69.61 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=70.5
Q ss_pred CCceeeccCCCCCChHHHHHHHHHhcC-CeEEEecCCeeEEEecCHHHHHHHHHH-------------------------
Q 036837 18 PYPVIGNLLEPGGKPHKSLANLTKIHG-RIMSLRLGLVTTVVVSSPSMAKAILKN------------------------- 71 (122)
Q Consensus 18 ~~p~~g~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~v~i~~p~~~~~il~~------------------------- 71 (122)
..++.|+......+..+.+..+.++++ .+++++.++. ++++||+++++|+.+
T Consensus 48 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~ 125 (502)
T PLN02426 48 RAYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFN 125 (502)
T ss_pred CCCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceee
Confidence 345777775543455666666777776 6777776554 889999999999965
Q ss_pred ---------------H-------------HhHHHHHHHHHHHHHhCC--CCceeeHHHHHHHHHHHHHHHHHhcCCCCC
Q 036837 72 ---------------Y-------------LRRKKINDLLGYVEENCP--AGKAIGFGQAAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 72 ---------------~-------------~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ii~~~~fG~~~~~ 120 (122)
. +..+.++.+++.+.+.+. .++++|+.+++.++++|+|+.++||.+++.
T Consensus 126 ~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~ 204 (502)
T PLN02426 126 VDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPGC 204 (502)
T ss_pred cCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 0 111222345555554432 246799999999999999999999998764
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.13 E-value=0.0017 Score=44.82 Aligned_cols=83 Identities=24% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCeEEEecCCee--EEEecCHHHHHHHHHH---------------------------------------
Q 036837 33 HKSLANLTKIHGRIMSLRLGLVT--TVVVSSPSMAKAILKN--------------------------------------- 71 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~~~~--~v~i~~p~~~~~il~~--------------------------------------- 71 (122)
......+.+.||.++.++..+.- .+++++++.+++++.+
T Consensus 25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~Rk 104 (411)
T COG2124 25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPRFFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLRK 104 (411)
T ss_pred hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcccccccccccccccchhhhccccceeecCCHHHHHHHH
Confidence 34455667778888777765543 7888999999999866
Q ss_pred ---------------HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcCCCCC
Q 036837 72 ---------------YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 72 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~~~~~ 120 (122)
+.+.+.+.++++.+ ..++.+++.+.+..+++++|+ .+||.+.++
T Consensus 105 l~~~~F~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~ 163 (411)
T COG2124 105 LLAPAFTPRALRGYRPLIREIADRLLDDL----WQGGADLVLDFAAELTLRVIA-ELLGVPLED 163 (411)
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHHHhc----ccCCchhHHHHhhhhhHHHHH-HHhCCCHHH
Confidence 12222233333333 123678899999999999999 999987653
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=78.51 E-value=9.9 Score=21.54 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCC------eeEEEecCHHHHHHHHHH
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGL------VTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------~~~v~i~~p~~~~~il~~ 71 (122)
.+...++||....+.++-|++.- =..+-.-+++-+||.|.++++|. ...||-.|-..++.....
T Consensus 7 ~~~~~rlppevnriLyirNLp~~--ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFK--ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred ccCCCCCChhhheeEEEecCCcc--ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 34445666666667777776532 12445667888999999999885 346666676666666655
No 34
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=74.23 E-value=14 Score=21.28 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 30 GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 30 ~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
.+....+++|.++||.+--.. +...+...|++.++++...
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhC
Confidence 344567889999999865532 4678888999999998854
No 35
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=70.01 E-value=5.6 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.8
Q ss_pred cCCeEEEecCCeeEEEe
Q 036837 43 HGRIMSLRLGLVTTVVV 59 (122)
Q Consensus 43 ~g~i~~~~~~~~~~v~i 59 (122)
-|++++++.|++.|.+.
T Consensus 3 ~GDvV~LKSGGp~MTV~ 19 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVT 19 (53)
T ss_pred CCCEEEEccCCCCeEEE
Confidence 48999999999988876
No 36
>PRK02302 hypothetical protein; Provisional
Probab=55.07 E-value=34 Score=18.70 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=24.2
Q ss_pred HHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 39 LTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 39 ~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
-.++||+|....--....++-.|-+.+.++..+
T Consensus 22 ~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 22 KLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 345799998886555566666788888888765
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=53.80 E-value=24 Score=16.64 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=21.2
Q ss_pred HHHHHhcCCeEEEecCC----eeEEEecCHHHHHHHH
Q 036837 37 ANLTKIHGRIMSLRLGL----VTTVVVSSPSMAKAIL 69 (122)
Q Consensus 37 ~~~~~~~g~i~~~~~~~----~~~v~i~~p~~~~~il 69 (122)
.++..+||+|..+.+.. .-.|-..+++.++...
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~ 38 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAI 38 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHH
Confidence 45678899998876543 2355556777776655
No 38
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=53.55 E-value=14 Score=21.96 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred eEEEecCHHHHHHHHHHHHhHHHHHHHHHHHHHhCC---CCceeeHHHHHHHHHHHHHHHHHhcC
Q 036837 55 TTVVVSSPSMAKAILKNYLRRKKINDLLGYVEENCP---AGKAIGFGQAAFHTSLNLSSNTIFSN 116 (122)
Q Consensus 55 ~~v~i~~p~~~~~il~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~ii~~~~fG~ 116 (122)
-.|++.|...+|.-- .-..+.++++++.+.+... ......+.+.+.+.-.++++-+++|.
T Consensus 76 a~IVmyDA~GVRr~a--G~qA~~lN~l~~~~~~~~~~~~~~~~~~LKE~lGHtp~EV~~G~llGi 138 (141)
T PF02681_consen 76 ALIVMYDAMGVRRAA--GKQAKVLNQLIEELEEEHQSEPPIQEKKLKELLGHTPLEVFAGALLGI 138 (141)
T ss_pred HHhheeehHHHHHHH--HHHHHHHHHHHHHHHhhhccccchhhhcccccCCCCHHHHHHHHHHHH
Confidence 356677877777655 4455667788887776531 22346788999999999999999885
No 39
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=52.58 E-value=14 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 036837 98 GQAAFHTSLNLSSNTIFSNNLVD 120 (122)
Q Consensus 98 ~~~~~~~~~~ii~~~~fG~~~~~ 120 (122)
..+...+++|.||.-.||.|+++
T Consensus 82 ka~S~e~ALn~ictr~fG~DLdS 104 (202)
T PF01707_consen 82 KAYSPEVALNEICTRFFGVDLDS 104 (202)
T ss_dssp ----HHHHHHHHHHHHHSS-GGG
T ss_pred cccCHHHHHHHHHHHHhccccCc
Confidence 45667789999999999999986
No 40
>PRK02886 hypothetical protein; Provisional
Probab=50.60 E-value=41 Score=18.31 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=24.0
Q ss_pred HHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 39 LTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 39 ~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
-.++||+|....--....++-.|-+.+.++..+
T Consensus 20 ~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 345799998886545566666788888888765
No 41
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]
Probab=45.54 E-value=48 Score=21.58 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHHHHHhcC
Q 036837 62 PSMAKAILKNYLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSSNTIFSN 116 (122)
Q Consensus 62 p~~~~~il~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~~~~fG~ 116 (122)
-.+++.|+.+.+..+.++....++.+.++++..+-.-+....+.+..+-.|.|+.
T Consensus 77 ~~LiraIlsQQLs~kAansI~~Rfvsl~~g~~~~~~pe~i~~~~~~~lrkcG~S~ 131 (254)
T KOG1918|consen 77 ERLIRAILSQQLSGKAANSIYNRFVSLCGGAEKFPTPEFIDPLDCEELRKCGFSK 131 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCchhcCcCCHHHHHHhCcch
Confidence 3567888877788888888888888876554445555555566666666666654
No 42
>PF14164 YqzH: YqzH-like protein
Probab=43.76 E-value=46 Score=16.96 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHHHH
Q 036837 72 YLRRKKINDLLGYVEENCPAGKAIGFGQAAFHTSLNLSS 110 (122)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ii~ 110 (122)
++...+-+.++..+...-......|+++.+...+.+.|.
T Consensus 25 pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvVY~yiT 63 (64)
T PF14164_consen 25 PLSDEEWEELCKHIQERKNEEPDEDLHEIVEDVVYDYIT 63 (64)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence 445566667777776654445567888888777766553
No 43
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.20 E-value=73 Score=17.39 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=25.3
Q ss_pred HHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 38 NLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 38 ~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
+..++||+|....--.+..+.-.+-+.+++++.+
T Consensus 20 RqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 20 RQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred HHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 4456799998775545567777788889988876
No 44
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=36.72 E-value=66 Score=16.74 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=21.6
Q ss_pred HHHhcCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 39 LTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 39 ~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
-.++||+|....--....++-.|-+.+.++..+
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred hHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 345799998775444556666677777776644
No 45
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=33.34 E-value=73 Score=19.82 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHhcC-CeEEEecCC-ee---EEEecCHHHHHHH
Q 036837 30 GKPHKSLANLTKIHG-RIMSLRLGL-VT---TVVVSSPSMAKAI 68 (122)
Q Consensus 30 ~~~~~~~~~~~~~~g-~i~~~~~~~-~~---~v~i~~p~~~~~i 68 (122)
+...+...++.+++| ++.++.+++ .| -++++||-.+--+
T Consensus 154 GkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAGvl 197 (218)
T COG1707 154 GKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAGVL 197 (218)
T ss_pred chHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhhhh
Confidence 556778899999999 999998665 33 5788888766533
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=31.56 E-value=1.2e+02 Score=18.01 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=32.3
Q ss_pred eeeccCCCCCChHHHHHHHHHhcCCeEEEecC---------CeeEEEecCHHHHHHHHHH
Q 036837 21 VIGNLLEPGGKPHKSLANLTKIHGRIMSLRLG---------LVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 21 ~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 71 (122)
+++++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 38 fVgnL~~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 38 FIGGLSW--GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred EEeCCCC--CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4555542 22456788888999998776542 2246667788888877743
No 47
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.28 E-value=65 Score=15.93 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.8
Q ss_pred cCCeEEEecCCeeEEEe
Q 036837 43 HGRIMSLRLGLVTTVVV 59 (122)
Q Consensus 43 ~g~i~~~~~~~~~~v~i 59 (122)
.|++++++-|++.+++.
T Consensus 7 tgdvV~lKsGGP~Mtvs 23 (60)
T COG5475 7 TGDVVTLKSGGPRMTVS 23 (60)
T ss_pred cCcEEEeecCCceEEEe
Confidence 48999999998877764
No 48
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=28.94 E-value=1.8e+02 Score=19.44 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCeeEEEe---cCHHHHHHHHHH
Q 036837 6 RLGGRQVRPGPKPYPVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLVTTVVV---SSPSMAKAILKN 71 (122)
Q Consensus 6 ~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i---~~p~~~~~il~~ 71 (122)
.+.++..-|+|..-+.+..+ ..+.+..+.+...++|.+ .+++++-.++.+ .+++.+.+++.+
T Consensus 11 ~YgpWT~t~~prRE~dlQ~l---QsrLya~L~~~~~~~ggl-~Ff~RgDN~iavtNGI~~~~~~~i~e~ 75 (254)
T PRK02240 11 NYGPWTVTPNPRRESDLQAL---QSRLYADLAQQFGARDGY-VFFTRFDNMIAVTNGIDLEDHARIQES 75 (254)
T ss_pred CCCcCcCCCCCccHHHHHHH---HHHHHHHHHHHHHhCCCE-EEeccCceEEEEcCCCCHHHHHHHHHH
Confidence 35566667777754444332 233444555555566653 444556667777 577788888766
No 49
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.03 E-value=2e+02 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHHH
Q 036837 31 KPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKNY 72 (122)
Q Consensus 31 ~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~ 72 (122)
....++..+..+||.+..+---+...+-..+++.+++++...
T Consensus 92 ~i~~~i~~~~~~ygk~klv~~~~~~~~es~~~~~l~~l~~~~ 133 (732)
T TIGR00603 92 GIIEFIRLCTQSYGKVKLVLKHNRYFVESPHPEVLQRLLKDP 133 (732)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCCceEEecCCHHHHHHHHhch
Confidence 445677889999998766544455577778999999999763
No 50
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=26.99 E-value=1.4e+02 Score=17.58 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHH
Q 036837 33 HKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il 69 (122)
.+-+.++.+...+++++ .-.+|.+ ||+.++.++
T Consensus 86 ~eEf~~L~~~~~~LV~~---rg~WV~l-d~~~l~~~~ 118 (141)
T PF12419_consen 86 EEEFEQLVEQKRPLVRF---RGRWVEL-DPEELRRAL 118 (141)
T ss_pred HHHHHHHHHcCCCeEEE---CCEEEEE-CHHHHHHHH
Confidence 45678888888899888 3345544 999888877
No 51
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=26.73 E-value=68 Score=20.64 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=23.3
Q ss_pred cCCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 43 HGRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 43 ~g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
|..+..+..|+..+++..|++.+++++.-
T Consensus 136 y~~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 136 YSSLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred hhhhhhheeccceEEEcCChHHHHHHHHH
Confidence 34556667777889999999999999966
No 52
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=26.46 E-value=2.1e+02 Score=19.36 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=31.0
Q ss_pred ceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCe---------eEEEecCHHHHHHHH
Q 036837 20 PVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLV---------TTVVVSSPSMAKAIL 69 (122)
Q Consensus 20 p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~---------~~v~i~~p~~~~~il 69 (122)
-++||+.. .--.+.+.+++.+||+|..+++... =.|...+++.+...+
T Consensus 272 lfV~NL~~--~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 272 IFVYNLSP--DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred EEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 35566642 2245577888899999988765422 256666777766554
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=26.43 E-value=1.7e+02 Score=18.40 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=28.2
Q ss_pred ceeeccCCCCCChHHHHHHHHHhcCCeEEEecCCe----eEEEecCHHHHHHH
Q 036837 20 PVIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLV----TTVVVSSPSMAKAI 68 (122)
Q Consensus 20 p~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~----~~v~i~~p~~~~~i 68 (122)
-++|||..- ---..++..+.+||++..+|+.-. ..|=.-||..+.+.
T Consensus 13 VYVGnL~~~--a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DA 63 (195)
T KOG0107|consen 13 VYVGNLGSR--ATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDA 63 (195)
T ss_pred EEeccCCCC--cchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHH
Confidence 356776422 223456788889999999986532 24444455555443
No 54
>smart00362 RRM_2 RNA recognition motif.
Probab=26.18 E-value=84 Score=14.68 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCeEEEecCC-------eeEEEecCHHHHHHHH
Q 036837 33 HKSLANLTKIHGRIMSLRLGL-------VTTVVVSSPSMAKAIL 69 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~~-------~~~v~i~~p~~~~~il 69 (122)
...+.++.++||++..+.+.. .-.+-..+++.++.++
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~ 56 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAI 56 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHH
Confidence 456777888999876654332 2245556777666654
No 55
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=25.60 E-value=1.3e+02 Score=17.80 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=28.4
Q ss_pred CCCCCCCCCceeeccCCCCCChHHHHHHHHHh-cCCeEEEecCCeeEEEecCHHHHHHHH
Q 036837 11 QVRPGPKPYPVIGNLLEPGGKPHKSLANLTKI-HGRIMSLRLGLVTTVVVSSPSMAKAIL 69 (122)
Q Consensus 11 ~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~v~i~~p~~~~~il 69 (122)
..|.|....|+++++.. ..+.....+ .+.+...+...--+++..+.+.+++++
T Consensus 53 GlpqG~~lS~~L~~~~l------~~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~ 106 (158)
T cd01646 53 GLPIGPLTSRFLANIYL------NDVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEIL 106 (158)
T ss_pred eEccCcchHHHHHHHHH------HHHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHH
Confidence 44555555666666432 123333333 455666665555566666766665554
No 56
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=25.21 E-value=1e+02 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHHHhCCCCceeeH
Q 036837 72 YLRRKKINDLLGYVEENCPAGKAIGF 97 (122)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (122)
.|..+.+...+.+|.+ +|..||+
T Consensus 332 Gf~rDqV~a~v~rl~E---~GQ~vD~ 354 (358)
T PF07223_consen 332 GFRRDQVRATVRRLTE---NGQPVDL 354 (358)
T ss_pred CCcHHHHHHHHHHHHh---cCCcccc
Confidence 7889999999999987 5777775
No 57
>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=24.74 E-value=33 Score=22.80 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHH
Q 036837 33 HKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAIL 69 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il 69 (122)
..++.++.++||+-+++..|-.|..++..-+..+++-
T Consensus 79 R~y~v~c~~k~GDevsyfPGyFpamYlpR~rVnRems 115 (351)
T PF12979_consen 79 RDYVVECQQKYGDEVSYFPGYFPAMYLPRERVNREMS 115 (351)
T ss_dssp HHHHHHHHHHH--EEEE---S-HHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCceeeccccchhhcCcHHHHHHHHH
Confidence 4467789999999888877766655555555555554
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=24.47 E-value=1.7e+02 Score=20.08 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=32.7
Q ss_pred eeeccCCCCCChHHHHHHHHHhcCCeEEEecCCe-eEEEecCHHHHHHHHHH
Q 036837 21 VIGNLLEPGGKPHKSLANLTKIHGRIMSLRLGLV-TTVVVSSPSMAKAILKN 71 (122)
Q Consensus 21 ~~g~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~v~i~~p~~~~~il~~ 71 (122)
++||+.. ......+..++++||.|.-+.+--. -.|.|-|-.+.+++..+
T Consensus 6 FIGNLp~--~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairN 55 (346)
T KOG0109|consen 6 FIGNLPR--EATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRN 55 (346)
T ss_pred hccCCCc--ccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhh
Confidence 5677653 2335567788999999887765433 36777677666766665
No 59
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=24.35 E-value=1.3e+02 Score=16.15 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCe---EEEecCCeeEEEecCH
Q 036837 35 SLANLTKIHGRI---MSLRLGLVTTVVVSSP 62 (122)
Q Consensus 35 ~~~~~~~~~g~i---~~~~~~~~~~v~i~~p 62 (122)
...++...|.++ ++++.++...+-|.+.
T Consensus 25 L~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~ 55 (81)
T PRK10597 25 LSRRIQYAFPDNEGHVSVRYAAANNLSVIGA 55 (81)
T ss_pred HHHHHHhhCCCCCccEEEeecCCCceEecCC
Confidence 335577778876 8888887776666433
No 60
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=23.70 E-value=2.2e+02 Score=18.72 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=15.7
Q ss_pred EEecCCeeEEEecCHHHHHHHHHH
Q 036837 48 SLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 48 ~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
...+++-..=++.||.+++.+|..
T Consensus 184 gaCLMGeT~GY~vDpkaAkaVL~v 207 (258)
T COG2047 184 GACLMGETPGYLVDPKAAKAVLEV 207 (258)
T ss_pred ceeeccCCCccccChHHHHHHHHH
Confidence 334444333345699999999966
No 61
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=23.21 E-value=1.1e+02 Score=17.29 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=25.0
Q ss_pred CCeEEEecCCeeEEEecCHHHHHHHHHH
Q 036837 44 GRIMSLRLGLVTTVVVSSPSMAKAILKN 71 (122)
Q Consensus 44 g~i~~~~~~~~~~v~i~~p~~~~~il~~ 71 (122)
|.|.++.+.....++|+.-+..++|...
T Consensus 36 g~VlTl~f~ngs~iiINkQ~P~~qiWlA 63 (106)
T COG1965 36 GGVLTLTFDNGSQIIINKQEPLQQIWLA 63 (106)
T ss_pred CCEEEEEECCCcEEEEeCCChHHHHHhh
Confidence 7899999988889999999999999865
No 62
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=22.10 E-value=38 Score=22.69 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHhcCC-eEEEe---cCCeeEEEecCH
Q 036837 29 GGKPHKSLANLTKIHGR-IMSLR---LGLVTTVVVSSP 62 (122)
Q Consensus 29 ~~~~~~~~~~~~~~~g~-i~~~~---~~~~~~v~i~~p 62 (122)
..++...+..+.+.+|| ||.+| ++.++++++++|
T Consensus 157 ~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~ 194 (280)
T PF09804_consen 157 PYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPP 194 (280)
T ss_pred CCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCC
Confidence 35677889999999997 45554 666777777655
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=21.94 E-value=3.1e+02 Score=19.77 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCeEEEecC------------CeeEEEecCHHHHHHHHH
Q 036837 34 KSLANLTKIHGRIMSLRLG------------LVTTVVVSSPSMAKAILK 70 (122)
Q Consensus 34 ~~~~~~~~~~g~i~~~~~~------------~~~~v~i~~p~~~~~il~ 70 (122)
+.+.+.+.+||.|..+.+. |.-.|...+.+.++..+.
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 4567888999999887753 222566667777776654
No 64
>smart00360 RRM RNA recognition motif.
Probab=21.76 E-value=1.1e+02 Score=14.21 Aligned_cols=37 Identities=30% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCeEEEecCC---------eeEEEecCHHHHHHHH
Q 036837 33 HKSLANLTKIHGRIMSLRLGL---------VTTVVVSSPSMAKAIL 69 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~~---------~~~v~i~~p~~~~~il 69 (122)
.+.+.++..+||++..+.+.. .-.|-..+++.+..++
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~ 55 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKAL 55 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHH
Confidence 356677778899887665432 2245556777666554
No 65
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=21.24 E-value=1.5e+02 Score=15.84 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHhcCCeEEEecCCeeEEEecCHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 036837 30 GKPHKSLANLTKIHGRIMSLRLGLVTTVVVSSPSMAKAILKNYLRRKKINDLLGYVEEN 88 (122)
Q Consensus 30 ~~~~~~~~~~~~~~g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~l~~~ 88 (122)
.+..++...|.+-.+.--. ....+...+|+.+..|+.+.+-.+.+.+++..+...
T Consensus 5 ~~~~eF~~~w~~~~~~~~~----~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~ 59 (94)
T PF13877_consen 5 KNSYEFERDWRRLKKDPEE----RYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEH 59 (94)
T ss_pred CCHHHHHHHHHHHcCCHHH----HHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4566666666665442110 112333347888888887755555666666666654
No 66
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=20.31 E-value=1.2e+02 Score=14.43 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCeEEEecC-CeeEEEec--CHHHHHH
Q 036837 33 HKSLANLTKIHGRIMSLRLG-LVTTVVVS--SPSMAKA 67 (122)
Q Consensus 33 ~~~~~~~~~~~g~i~~~~~~-~~~~v~i~--~p~~~~~ 67 (122)
.+.+..-...+|.|...... ..+.+++. +...++.
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~ 51 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEK 51 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHh
Confidence 34444455568999998877 34554444 6655544
Done!