BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036840
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVS 64
GGV RN+AE +++G S LG D G ++EH K G + + T
Sbjct: 41 FGGVCRNIAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIGYHXDDSXVIEGGSTPTYL 100
Query: 65 NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAA 124
ILD NGE +A+A +SI T D+I +A ++D++ P +
Sbjct: 101 AILDENGEXVSAIADXKSIGAXNT-DFIDSKREIFENAEYTVLDSD--NPEIXEYLLKNF 157
Query: 125 ECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAE 184
+ +PVS K+ + ++K + PN E A L+G F D +
Sbjct: 158 KDKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHE----AEILAG---FPITDTDD---- 206
Query: 185 SLFQTLKPAILVLLEKGIRLVVLTLGSDGVL 215
L A L GI+ V ++L +DG+
Sbjct: 207 -----LIKASNYFLGLGIKKVFISLDADGIF 232
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVS 64
GG N ++LG+ M+ +G D GN +E+ K +STE + KD T S
Sbjct: 60 FGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTAS 119
Query: 65 NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAA 124
I VN E + V L + +R + IS A V++ ++P + +A
Sbjct: 120 II--VNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMAR 177
Query: 125 ECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAE 184
+ F P V NE E A L+G + D +
Sbjct: 178 RSGVKTLFNPAPAIADLD-PQFYTLSDVFCCNESE----AEILTGLTVGSAADAGE---- 228
Query: 185 SLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233
A LVLL++G ++V++TLG++G ++ S+ I K K
Sbjct: 229 --------AALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVK 269
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG N A +S+LG + +I+ G D+ G ++ E + AG+ D T +
Sbjct: 39 GGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFL-DRRTPSYTA 97
Query: 66 ILDVNGELAAAVASVESIEKFLTPDW--IRQFIHHISSASVLMVDANLSPPALAASCKIA 123
IL+ +G L A+A ++ + K TP +R I ++ L+ DANL L A IA
Sbjct: 98 ILERDGNLVIALADMD-LYKLFTPRRLKVRAVREAIIASDFLLCDANLPEDTLTALGLIA 156
Query: 124 AECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGEN 171
C P+ +S K+ ++ + + I ++ NE E A AL+GE
Sbjct: 157 RACEKPLAAIAISPAKAVKLKAALGDIDILFMNEAE----ARALTGET 200
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 268 AVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSV 306
A+ P L V +TGAGD + G LA+I+ G + +++
Sbjct: 237 AILHPPLIREVKDVTGAGDAMASGYLAAIAEGKTIREAL 275
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 114/325 (35%), Gaps = 101/325 (31%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVS 64
GG N+A +S+LG K +IS LG D GN LL+ K + T+GI++ K+ T +V
Sbjct: 53 FGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTIVY 112
Query: 65 NILDVNGELAAAVASVESIEKFLTPDWI--RQFIHHISSASVLMVDANLS---------- 112
+ TPDW+ R+ ++ ++ S
Sbjct: 113 -----------------VSKSTRTPDWLPYREADXYLQEDDIIFELIKRSKVFHLSTFIL 155
Query: 113 --PPALAASCK---IAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANA- 166
PA + K A E V F+P Y V+ P D+ +
Sbjct: 156 SRKPARDTAIKAFNYAREQGKIVCFDPC-------------YRKVLWPEGDDGAGVVEEI 202
Query: 167 LSGENMFRP-IDRNKHSAESLFQTLKPAILV--LLEKGIRLVVLTLGSDGVLLCSKELLS 223
+S + +P +D +H LF P V LE G++ V+LTLG +GV+ E +
Sbjct: 203 ISRADFVKPSLDDARH----LFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEI- 257
Query: 224 SMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTG 283
+ PA V +TG
Sbjct: 258 ---------------------------------------------IRIPAFSEDAVDVTG 272
Query: 284 AGDCLVGGTLASISSGLDVMQSVAV 308
AGD G + + G V +S+ +
Sbjct: 273 AGDAFWSGFICGLLDGYTVKRSIKL 297
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 1 VNYVLGGVARNVAECMSKLGSKP-YMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDID 59
+N GG N A ++K+G K ++ +G D ++L+E+++ G+ T IR
Sbjct: 46 MNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLLIENYEKLGI-TGYIRVSLPTG 104
Query: 60 TAVVSNILDVNGELAAAV---ASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPAL 116
A + +D G+ + A+ E ++ + DW + +S + +L++ N P
Sbjct: 105 RAFIE--VDKTGQNRIIIFPGANAELKKELI--DW-----NTLSESDILLLQ-NEIPFET 154
Query: 117 AASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPI 176
C A N V F+P + +Y+ ++PNE E+ A++ GE
Sbjct: 155 TLEC--AKRFNGIVIFDPAPAQGINE--EIFQYLDYLTPNEKEIEALSKDFFGE------ 204
Query: 177 DRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSK 219
F T++ A LE G++ V++ LG GVLL +K
Sbjct: 205 ----------FLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNK 237
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 62/294 (21%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG + NV C+++LG + I LG D AG L + ++ G+ +R D+ +AV+
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV 109
Query: 66 ILDVNGELAAAVASVESIEKFLTPDWIRQFIHH--ISSASVLMVDANLSPPALAASCKIA 123
L +GE + + +++P + F + +S+ + D L + +
Sbjct: 110 NLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGA-RRX 168
Query: 124 AECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSA 183
E V F+ +K T + EL+A + AL+ + + S
Sbjct: 169 REAGGYVLFDVNLRSKXWGNTDEIP----------ELIARSAALASICKVSADELCQLSG 218
Query: 184 ESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYK 243
S +Q + L + G +++LG+DG LL + E
Sbjct: 219 ASHWQDAR---YYLRDLGCDTTIISLGADGALLITAE----------------------- 252
Query: 244 TVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASIS 297
+F HFPA VV TGAGD VGG L ++S
Sbjct: 253 --------------------GEF---HFPAPRVDVVDTTGAGDAFVGGLLFTLS 283
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 82/304 (26%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG + NV C+++LG + I LG D AG L + ++ G+ +R D+ +AV+
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV 109
Query: 66 ILDVNGELAAAVASVESIEKFLTPDWIRQFIHH--ISSASVLMVDANLSPPALAASCKIA 123
L +GE + + +++P + F + +S+ + D PA A
Sbjct: 110 NLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDR----PAREA----- 160
Query: 124 AECNIPVWFEPVSVTKSRRITSVVKYI-------TVVSPNED---ELVAMANALSGENMF 173
+ +RR+ Y+ + + N D EL+A + AL+
Sbjct: 161 ------------CLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKV 208
Query: 174 RPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233
+ + S S +Q + L + G +++LG+DG LL + E
Sbjct: 209 SADELCQLSGASHWQDAR---YYLRDLGCDTTIISLGADGALLITAE------------- 252
Query: 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTL 293
+F HFPA VV TGAGD VGG L
Sbjct: 253 ------------------------------GEF---HFPAPRVDVVDTTGAGDAFVGGLL 279
Query: 294 ASIS 297
++S
Sbjct: 280 FTLS 283
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG A N A +S+LG + + S +G D AG +L+H + + + +++ IDT++
Sbjct: 43 GGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVG 102
Query: 66 ILDVNGE 72
++ +GE
Sbjct: 103 LVTEDGE 109
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 15/178 (8%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG NVA +++LG + LG D G+ L + + AG+ T+GI R TA+
Sbjct: 36 GGAPANVAVAVARLGGAVQFVGXLGSDXFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFV 95
Query: 66 ILDVNGELA------AAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSP------ 113
LD +GE + A + +E F + I H S S DA+++
Sbjct: 96 ALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNS--XTDADIAEVTFEGX 153
Query: 114 -PALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGE 170
A AA ++ + N P + R+ + VV + +EL +AN L+ +
Sbjct: 154 RRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAAD 211
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVS 64
GG N A + G+ I+ G D G + + + + + K T V
Sbjct: 40 FGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVA- 98
Query: 65 NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAA 124
++ VNGE + L+P + I++AS L++ ++ A+ KIA
Sbjct: 99 -LIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAH 157
Query: 125 ECNIPVWFEPVSVTKSRRI-TSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSA 183
+ V P +R + ++ + +++PNE E A L+G R ++ ++ +A
Sbjct: 158 QNKTIVALNPA---PARELPDELLALVDIITPNETE----AEKLTG---IR-VENDEDAA 206
Query: 184 ESLFQTLKPAILVLLEKGIRLVVLTLGSDGV 214
+ A VL EKGIR V++TLGS GV
Sbjct: 207 K--------AAQVLHEKGIRTVLITLGSRGV 229
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 20/214 (9%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSN 65
GG N A +++ + I+ +G D + +LE +K A + T I + + T
Sbjct: 40 GGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTG--QA 97
Query: 66 ILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAE 125
+ VN E + +TP+ + I +A ++ + PA+ ++ +IA
Sbjct: 98 FITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKA 157
Query: 126 CNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAES 185
+ P ++ I ++ PNE E A LSG +
Sbjct: 158 HGVTTVLNPAPAKALPN--ELLSLIDIIVPNETE----AELLSGIKVTNE---------- 201
Query: 186 LFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSK 219
Q++K L GI+ V++TLG G +K
Sbjct: 202 --QSMKDNANYFLSIGIKTVLITLGKQGTYFATK 233
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVV 63
GG NVA +S+LG K +IS +G D G L+E + T GI + + T +V
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIV 90
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 6 GGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVV 63
GG NVA +S+LG K +IS +G D G L+E + T GI + + T +V
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIV 90
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 62/153 (40%)
Query: 153 VSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD 212
+ PN+DEL M N + S +K L L++KG + V+++LG D
Sbjct: 178 IKPNKDELEVMFNT---------------TVNSDADVIKYGRL-LVDKGAQSVIVSLGGD 221
Query: 213 GVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFP 272
G + KE I ++ P G
Sbjct: 222 GAIYIDKE------ISIKAVNPQG------------------------------------ 239
Query: 273 ALPASVVRLTGAGDCLVGGTLASISSGLDVMQS 305
VV G+GD V G +A I+SGL + ++
Sbjct: 240 ----KVVNTVGSGDSTVAGMVAGIASGLSIEKA 268
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 34/230 (14%)
Query: 3 YVLGGVARN---VAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDID 59
Y+ GG +N VA+ + + +G D IL E S G++ ++ Q+
Sbjct: 77 YIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVN---VQYQRSAT 133
Query: 60 TAVVSNILDVNGELAAAVASVESIEKFLTPDWIR-----------QFIHHISSASVLMVD 108
+ + + V G + A++ + F TP+ +R QF + + +
Sbjct: 134 SPTGTCAVLVTGTQRSLCANLAAANDF-TPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFE 192
Query: 109 ANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALS 168
+ LS AA+ N+ F P + + + Y+ V+ NE E +A+A +
Sbjct: 193 SALSVAKEAAATGRMFMMNLSAPFVPQFYKNN--LEEIFPYVDVLFGNETEAIALAKEFN 250
Query: 169 GENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIR--LVVLTLGSDGVLL 216
+ E L + K + E G R +V++T GSD VLL
Sbjct: 251 ------------YGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLL 288
>pdb|3BQA|A Chain A, Crystal Structure Of An E.Coli Phoq Sensor Domain Mutant
pdb|3BQA|B Chain B, Crystal Structure Of An E.Coli Phoq Sensor Domain Mutant
Length = 148
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 39 LEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHH 98
L W++ L E + D + ++ I D NG+L A V + K + PDW++ H
Sbjct: 20 LAKWENNKLHVE-LPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFH 78
Query: 99 ISSASV 104
A V
Sbjct: 79 EIEADV 84
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 278 VVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311
+V GAGD VGG L ++S G V Q + +A
Sbjct: 310 IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNA 343
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 278 VVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311
+V GAGD VGG L ++S G V Q + +A
Sbjct: 330 IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNA 363
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVS 64
+GG N A +S+ G ++SA+G D G+ + E +K L + I R D T V
Sbjct: 23 IGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIXEVFKEKQLKNQ-IERV-DYPTGTVQ 80
Query: 65 NILDVNG 71
LD G
Sbjct: 81 VTLDDEG 87
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 255 SGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311
GA + QF H + P V TGAGDC G +A G D +++ +A
Sbjct: 232 QGASYYSANEQF---HVESYPVEEVDPTGAGDCFGGAWIACRQLGFDAHRALQYANA 285
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDN|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|G Chain G, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|H Chain H, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|I Chain I, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|J Chain J, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
Length = 133
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 86 FLTPDWIRQFIHHISSASVLMVDANLSPP 114
+LTP+ Q +H++S A LM+D L P
Sbjct: 75 YLTPESFDQKVHNVSFAFELMLDGGLKKP 103
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 278 VVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311
+V GAGD VGG L +S G V Q + +A
Sbjct: 310 IVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNA 343
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 278 VVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311
+V GAGD VGG L +S G V Q + +A
Sbjct: 310 IVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNA 343
>pdb|3BQ8|A Chain A, Crystal Structure Of The E.Coli Phoq Sensor Domain
pdb|3BQ8|B Chain B, Crystal Structure Of The E.Coli Phoq Sensor Domain
Length = 148
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 39 LEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHH 98
L W++ L E + D + + I D NG+L A V + K + PDW++ H
Sbjct: 20 LAKWENNKLHVE-LPENIDKQSPTXTLIYDENGQLLWAQRDVPWLXKXIQPDWLKSNGFH 78
Query: 99 ISSASV 104
A V
Sbjct: 79 EIEADV 84
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 151 TVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLG 210
TV+ PN EL + N +P+D ESL ++LK A+ L +GI ++++LG
Sbjct: 200 TVIKPNISELYQLLN--------QPLD------ESL-ESLKQAVSQPLFEGIEWIIVSLG 244
Query: 211 SDGVL 215
+ G
Sbjct: 245 AQGAF 249
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 151 TVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLG 210
TV+ PN EL + N +P+D ESL ++LK A+ L +GI ++++LG
Sbjct: 200 TVIKPNISELYQLLN--------QPLD------ESL-ESLKQAVSQPLFEGIEWIIVSLG 244
Query: 211 SDGVL 215
+ G
Sbjct: 245 AQGAF 249
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 7 GVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNI 66
G A + A + + G + + A+G D G +L +G+ T G +A+ + I
Sbjct: 67 GXASSAAYAVHRXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTII 126
Query: 67 LDVNGE 72
+D GE
Sbjct: 127 IDNRGE 132
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 5 LGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRR 54
+GG NVA +++LG K + +G D G ++ E ++ G+ RR
Sbjct: 32 VGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,830,719
Number of Sequences: 62578
Number of extensions: 327663
Number of successful extensions: 944
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 61
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)