Query 036840
Match_columns 327
No_of_seqs 119 out of 1413
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11142 ribokinase; Provision 100.0 9.4E-39 2E-43 297.9 26.7 253 2-320 35-287 (306)
2 PRK09850 pseudouridine kinase; 100.0 2.3E-38 5.1E-43 296.8 26.7 253 2-318 36-288 (313)
3 cd01174 ribokinase Ribokinase 100.0 3.1E-38 6.6E-43 292.3 26.8 252 2-319 32-283 (292)
4 PTZ00292 ribokinase; Provision 100.0 3.1E-38 6.6E-43 297.5 26.6 255 2-319 48-307 (326)
5 PRK09954 putative kinase; Prov 100.0 8E-38 1.7E-42 298.9 26.3 253 2-318 89-341 (362)
6 cd01168 adenosine_kinase Adeno 100.0 8.8E-38 1.9E-42 292.5 23.9 248 2-319 51-306 (312)
7 TIGR02152 D_ribokin_bact ribok 100.0 1.5E-36 3.2E-41 281.4 27.0 254 2-320 27-280 (293)
8 cd01166 KdgK 2-keto-3-deoxyglu 100.0 5.1E-37 1.1E-41 284.2 23.8 251 2-319 27-290 (294)
9 PLN02967 kinase 100.0 3E-37 6.6E-42 305.4 23.6 269 2-320 239-529 (581)
10 cd01941 YeiC_kinase_like YeiC- 100.0 1.9E-36 4E-41 279.8 27.3 254 2-318 31-287 (288)
11 PTZ00247 adenosine kinase; Pro 100.0 5.7E-37 1.2E-41 291.3 23.2 253 2-320 58-332 (345)
12 PRK15074 inosine/guanosine kin 100.0 1.1E-36 2.4E-41 295.0 25.4 279 2-319 88-411 (434)
13 cd01940 Fructoselysine_kinase_ 100.0 8.2E-37 1.8E-41 279.1 22.4 242 2-319 18-260 (264)
14 PLN02323 probable fructokinase 100.0 1.4E-36 3.1E-41 286.6 24.4 251 2-320 39-309 (330)
15 cd01167 bac_FRK Fructokinases 100.0 2.8E-36 6.2E-41 279.5 22.1 248 2-319 24-291 (295)
16 PRK09434 aminoimidazole ribosi 100.0 8.3E-36 1.8E-40 278.1 24.8 247 3-320 25-291 (304)
17 PLN02341 pfkB-type carbohydrat 100.0 5.7E-36 1.2E-40 294.7 24.5 247 4-320 118-391 (470)
18 PLN02543 pfkB-type carbohydrat 100.0 2.6E-36 5.6E-41 296.0 21.7 268 2-320 168-471 (496)
19 TIGR01231 lacC tagatose-6-phos 100.0 1.4E-35 3.1E-40 277.4 24.0 249 2-320 31-287 (309)
20 cd01944 YegV_kinase_like YegV- 100.0 1.7E-35 3.7E-40 274.0 24.0 247 2-319 32-287 (289)
21 PLN02379 pfkB-type carbohydrat 100.0 1.7E-35 3.6E-40 283.1 24.6 248 2-319 82-338 (367)
22 COG0524 RbsK Sugar kinases, ri 100.0 1.7E-35 3.7E-40 276.8 23.8 252 2-319 33-290 (311)
23 PLN02813 pfkB-type carbohydrat 100.0 1.6E-35 3.4E-40 288.0 23.9 249 2-320 122-389 (426)
24 PRK13508 tagatose-6-phosphate 100.0 2.4E-35 5.2E-40 275.9 24.2 247 2-319 32-286 (309)
25 cd01945 ribokinase_group_B Rib 100.0 1.3E-35 2.9E-40 273.7 22.2 244 2-319 32-275 (284)
26 PF00294 PfkB: pfkB family car 100.0 4.6E-36 1E-40 278.3 18.5 252 2-319 32-291 (301)
27 cd01172 RfaE_like RfaE encodes 100.0 2.7E-35 5.9E-40 274.2 23.4 247 2-319 36-291 (304)
28 cd01164 FruK_PfkB_like 1-phosp 100.0 5.3E-35 1.1E-39 270.8 24.9 245 2-319 32-285 (289)
29 TIGR03828 pfkB 1-phosphofructo 100.0 6.8E-35 1.5E-39 271.5 24.9 247 2-320 31-285 (304)
30 TIGR02198 rfaE_dom_I rfaE bifu 100.0 6.7E-35 1.5E-39 273.1 24.6 247 2-319 44-299 (315)
31 cd01942 ribokinase_group_A Rib 100.0 6.4E-35 1.4E-39 268.3 21.9 240 2-319 32-275 (279)
32 cd01939 Ketohexokinase Ketohex 100.0 2.4E-34 5.2E-39 266.6 23.9 245 2-320 32-287 (290)
33 cd01947 Guanosine_kinase_like 100.0 1.4E-34 3.1E-39 264.5 22.0 231 2-320 32-262 (265)
34 PRK09813 fructoselysine 6-kina 100.0 2.1E-34 4.6E-39 263.0 22.8 236 3-319 20-256 (260)
35 PRK10294 6-phosphofructokinase 100.0 5.5E-34 1.2E-38 266.7 26.0 248 2-319 34-289 (309)
36 TIGR03168 1-PFK hexose kinase, 100.0 4.2E-34 9.2E-39 266.4 24.8 247 2-320 31-285 (303)
37 PLN02548 adenosine kinase 100.0 1.4E-33 2.9E-38 266.6 24.2 252 2-319 48-320 (332)
38 PRK09513 fruK 1-phosphofructok 100.0 2.6E-33 5.6E-38 262.5 24.8 247 2-320 35-289 (312)
39 cd01943 MAK32 MAK32 kinase. M 100.0 2.4E-34 5.3E-39 271.4 17.7 258 2-319 22-301 (328)
40 KOG2855 Ribokinase [Carbohydra 100.0 6.4E-34 1.4E-38 260.7 17.7 248 2-319 42-307 (330)
41 COG1105 FruK Fructose-1-phosph 100.0 1.7E-31 3.6E-36 244.7 25.3 247 2-320 32-287 (310)
42 PRK11316 bifunctional heptose 100.0 1.5E-31 3.2E-36 264.3 24.4 247 2-319 47-297 (473)
43 cd01946 ribokinase_group_C Rib 100.0 9.4E-32 2E-36 247.6 20.7 240 3-319 22-272 (277)
44 cd01937 ribokinase_group_D Rib 100.0 9E-31 2E-35 237.9 20.6 229 2-317 20-253 (254)
45 PLN02630 pfkB-type carbohydrat 100.0 4.6E-30 1E-34 242.2 19.7 226 2-319 33-274 (335)
46 KOG2854 Possible pfkB family c 100.0 5.2E-29 1.1E-33 225.9 19.0 256 1-315 58-327 (343)
47 COG2870 RfaE ADP-heptose synth 99.9 3.5E-25 7.7E-30 205.2 21.4 241 2-315 47-292 (467)
48 KOG2947 Carbohydrate kinase [C 99.9 1.5E-23 3.3E-28 182.3 17.6 247 4-320 39-296 (308)
49 cd00287 ribokinase_pfkB_like r 99.9 3.3E-23 7.1E-28 180.3 16.6 160 2-297 32-196 (196)
50 PRK12412 pyridoxal kinase; Rev 99.7 6.3E-16 1.4E-20 142.0 24.1 218 24-318 3-247 (268)
51 PRK12413 phosphomethylpyrimidi 99.7 3.1E-16 6.7E-21 142.7 20.9 218 22-319 3-244 (253)
52 TIGR00687 pyridox_kin pyridoxa 99.7 2.2E-16 4.7E-21 146.4 17.4 172 86-320 53-259 (286)
53 TIGR00097 HMP-P_kinase phospho 99.7 1E-15 2.3E-20 139.5 19.0 166 87-314 50-235 (254)
54 cd01173 pyridoxal_pyridoxamine 99.7 3.3E-16 7.2E-21 142.5 15.7 165 87-313 52-245 (254)
55 cd01169 HMPP_kinase 4-amino-5- 99.7 6.3E-16 1.4E-20 139.5 16.4 150 101-312 68-234 (242)
56 PRK05756 pyridoxamine kinase; 99.7 7.5E-16 1.6E-20 142.8 15.9 164 87-313 54-249 (286)
57 PRK08573 phosphomethylpyrimidi 99.7 7E-15 1.5E-19 144.4 22.7 219 23-317 3-242 (448)
58 PRK06427 bifunctional hydroxy- 99.7 1.1E-15 2.5E-20 140.0 15.8 153 101-314 73-243 (266)
59 PRK07105 pyridoxamine kinase; 99.6 5.1E-15 1.1E-19 137.1 16.1 156 101-313 75-249 (284)
60 PRK08176 pdxK pyridoxal-pyrido 99.6 5E-15 1.1E-19 137.0 14.8 156 100-318 87-267 (281)
61 PRK12616 pyridoxal kinase; Rev 99.6 1.9E-14 4.1E-19 132.4 16.7 220 23-318 4-250 (270)
62 KOG3009 Predicted carbohydrate 99.5 4.4E-13 9.6E-18 126.4 16.1 214 2-309 373-590 (614)
63 cd01171 YXKO-related B.subtili 99.5 1.5E-12 3.3E-17 118.5 16.4 160 96-318 72-234 (254)
64 PLN02898 HMP-P kinase/thiamin- 99.4 1.2E-11 2.6E-16 123.3 21.7 214 23-313 10-247 (502)
65 PTZ00344 pyridoxal kinase; Pro 99.4 3.1E-12 6.7E-17 119.2 15.3 169 86-312 56-251 (296)
66 PTZ00347 phosphomethylpyrimidi 99.4 2.8E-12 6.1E-17 127.9 15.7 218 23-318 231-479 (504)
67 PRK09517 multifunctional thiam 99.4 4.7E-11 1E-15 124.2 19.7 218 23-318 242-485 (755)
68 PF08543 Phos_pyr_kin: Phospho 99.3 1.8E-11 4E-16 111.1 14.0 148 101-310 60-225 (246)
69 TIGR00196 yjeF_cterm yjeF C-te 99.3 1.6E-10 3.5E-15 106.4 17.8 218 25-318 27-249 (272)
70 PRK14713 multifunctional hydro 99.3 5.2E-11 1.1E-15 119.4 15.1 222 20-318 27-273 (530)
71 PLN02978 pyridoxal kinase 99.2 6.5E-10 1.4E-14 104.2 17.9 180 86-320 66-270 (308)
72 COG0351 ThiD Hydroxymethylpyri 99.2 1.8E-09 3.9E-14 97.4 19.6 216 23-316 4-244 (263)
73 cd01170 THZ_kinase 4-methyl-5- 99.1 5.1E-10 1.1E-14 101.4 12.7 162 95-311 43-214 (242)
74 COG2240 PdxK Pyridoxal/pyridox 99.0 9.2E-09 2E-13 93.4 15.9 172 87-320 53-253 (281)
75 PTZ00493 phosphomethylpyrimidi 98.9 3.7E-07 8E-12 85.5 20.2 243 22-319 4-287 (321)
76 PRK09355 hydroxyethylthiazole 98.7 4.8E-07 1E-11 83.0 14.5 160 97-312 50-219 (263)
77 TIGR00694 thiM hydroxyethylthi 98.5 1.8E-06 3.9E-11 78.5 12.0 158 97-310 45-212 (249)
78 KOG2598 Phosphomethylpyrimidin 98.5 3E-06 6.5E-11 80.4 13.4 181 87-309 75-273 (523)
79 PRK14039 ADP-dependent glucoki 98.5 2E-05 4.3E-10 76.7 19.5 205 2-219 87-341 (453)
80 PRK03979 ADP-specific phosphof 98.4 1.5E-05 3.2E-10 77.7 16.3 206 3-219 99-356 (463)
81 TIGR02045 P_fruct_ADP ADP-spec 98.4 4.3E-05 9.2E-10 74.3 19.4 204 3-219 86-342 (446)
82 PRK14038 ADP-dependent glucoki 98.1 0.00054 1.2E-08 66.8 19.5 204 2-216 106-349 (453)
83 KOG2599 Pyridoxal/pyridoxine/p 98.1 0.00013 2.8E-09 65.6 13.9 173 87-318 62-264 (308)
84 PF04587 ADP_PFK_GK: ADP-speci 97.8 0.00011 2.5E-09 72.1 10.3 206 3-220 92-345 (444)
85 PRK10565 putative carbohydrate 97.5 0.003 6.6E-08 63.3 15.4 150 97-310 316-466 (508)
86 cd01938 ADPGK_ADPPFK ADP-depen 97.5 0.0048 1E-07 60.5 16.1 160 2-171 102-292 (445)
87 PF02110 HK: Hydroxyethylthiaz 97.5 0.0058 1.3E-07 55.3 15.3 155 97-307 45-209 (246)
88 PF01256 Carb_kinase: Carbohyd 97.0 0.011 2.4E-07 53.5 11.6 150 96-310 62-213 (242)
89 COG2145 ThiM Hydroxyethylthiaz 96.9 0.022 4.8E-07 51.4 12.8 77 88-167 45-131 (265)
90 COG4809 Archaeal ADP-dependent 95.9 0.21 4.6E-06 47.6 13.2 84 86-169 210-312 (466)
91 KOG3974 Predicted sugar kinase 94.6 1.3 2.9E-05 40.1 13.5 71 96-166 96-174 (306)
92 KOG4184 Predicted sugar kinase 94.3 0.7 1.5E-05 43.6 11.5 164 2-170 139-322 (478)
93 COG0063 Predicted sugar kinase 93.9 1.9 4.1E-05 40.0 13.7 69 98-166 98-169 (284)
94 PRK10076 pyruvate formate lyas 88.9 5.5 0.00012 35.3 10.5 89 101-208 38-134 (213)
95 COG1180 PflA Pyruvate-formate 83.7 10 0.00022 34.6 9.8 79 87-165 69-155 (260)
96 PRK00278 trpC indole-3-glycero 62.3 52 0.0011 30.0 8.6 58 98-157 130-188 (260)
97 PF09314 DUF1972: Domain of un 61.5 53 0.0012 28.4 8.1 37 101-137 92-128 (185)
98 PRK09722 allulose-6-phosphate 61.5 32 0.00069 30.9 6.9 55 101-155 82-136 (229)
99 PRK13397 3-deoxy-7-phosphohept 60.4 79 0.0017 28.8 9.3 93 112-211 64-160 (250)
100 TIGR02826 RNR_activ_nrdG3 anae 56.3 45 0.00097 27.6 6.5 72 86-158 45-118 (147)
101 TIGR00334 5S_RNA_mat_M5 ribonu 55.7 44 0.00095 28.6 6.4 69 92-161 14-85 (174)
102 PF10087 DUF2325: Uncharacteri 53.8 40 0.00086 25.5 5.4 40 97-136 44-84 (97)
103 PRK09206 pyruvate kinase; Prov 53.0 1.2E+02 0.0027 30.2 10.0 106 86-208 169-278 (470)
104 TIGR02494 PFLE_PFLC glycyl-rad 52.9 94 0.002 28.5 8.8 53 103-155 127-182 (295)
105 PRK06702 O-acetylhomoserine am 52.5 99 0.0022 30.5 9.3 36 100-135 146-185 (432)
106 cd00288 Pyruvate_Kinase Pyruva 52.3 1.3E+02 0.0029 30.1 10.1 106 87-209 172-280 (480)
107 KOG0053 Cystathionine beta-lya 51.5 31 0.00068 33.6 5.4 49 87-135 147-200 (409)
108 cd04726 KGPDC_HPS 3-Keto-L-gul 49.9 1.6E+02 0.0035 25.0 9.7 55 100-155 76-132 (202)
109 PRK13018 cell division protein 49.6 1.3E+02 0.0028 29.2 9.3 135 4-158 35-185 (378)
110 PF01212 Beta_elim_lyase: Beta 49.6 34 0.00073 31.8 5.2 72 85-156 104-192 (290)
111 TIGR03128 RuMP_HxlA 3-hexulose 48.6 40 0.00086 29.1 5.3 57 100-156 75-133 (206)
112 PRK06739 pyruvate kinase; Vali 48.2 1.2E+02 0.0025 29.2 8.7 107 86-209 162-272 (352)
113 PRK06354 pyruvate kinase; Prov 46.8 1.4E+02 0.0031 30.7 9.6 106 86-208 175-284 (590)
114 TIGR01361 DAHP_synth_Bsub phos 46.6 1.3E+02 0.0029 27.4 8.6 89 113-208 75-166 (260)
115 PRK06247 pyruvate kinase; Prov 46.5 1.4E+02 0.0031 29.8 9.3 105 87-209 171-276 (476)
116 TIGR02493 PFLA pyruvate format 45.8 1.8E+02 0.0039 25.5 9.3 55 103-157 67-126 (235)
117 COG1646 Predicted phosphate-bi 45.7 1.4E+02 0.0031 26.8 8.2 37 100-136 40-79 (240)
118 PRK12595 bifunctional 3-deoxy- 44.7 1.3E+02 0.0029 28.8 8.6 90 112-208 167-259 (360)
119 PHA00438 hypothetical protein 42.4 20 0.00043 26.3 1.9 20 278-297 43-62 (81)
120 PRK04169 geranylgeranylglycery 41.7 1.9E+02 0.004 26.0 8.5 38 99-136 30-69 (232)
121 PRK05826 pyruvate kinase; Prov 41.3 2.1E+02 0.0045 28.6 9.6 105 87-208 171-279 (465)
122 PRK09330 cell division protein 41.3 2.6E+02 0.0056 27.2 10.0 132 4-157 20-169 (384)
123 PRK11557 putative DNA-binding 41.3 2E+02 0.0043 26.0 9.0 101 87-214 113-215 (278)
124 TIGR01768 GGGP-family geranylg 41.2 1.5E+02 0.0032 26.5 7.8 60 100-165 26-91 (223)
125 PRK15452 putative protease; Pr 40.9 1.8E+02 0.0038 28.9 9.0 37 100-136 22-68 (443)
126 PF07745 Glyco_hydro_53: Glyco 40.5 1.8E+02 0.0039 27.7 8.6 81 109-212 53-134 (332)
127 TIGR02491 NrdG anaerobic ribon 40.2 90 0.002 25.8 6.0 69 86-154 45-127 (154)
128 PTZ00300 pyruvate kinase; Prov 39.7 2.5E+02 0.0053 28.0 9.7 106 87-209 145-253 (454)
129 PRK13601 putative L7Ae-like ri 39.3 87 0.0019 23.2 5.1 36 100-135 23-58 (82)
130 COG0036 Rpe Pentose-5-phosphat 38.3 62 0.0013 28.8 4.8 54 101-155 84-137 (220)
131 PRK13600 putative ribosomal pr 38.1 98 0.0021 23.1 5.2 36 101-136 29-64 (84)
132 PF00834 Ribul_P_3_epim: Ribul 37.6 1E+02 0.0023 26.9 6.2 95 101-211 80-174 (201)
133 PF10911 DUF2717: Protein of u 37.0 26 0.00057 25.6 1.9 21 278-298 43-63 (77)
134 cd03319 L-Ala-DL-Glu_epimerase 36.6 99 0.0021 28.7 6.3 70 86-156 187-258 (316)
135 PLN02623 pyruvate kinase 35.6 3.2E+02 0.007 28.1 10.0 106 86-208 275-383 (581)
136 PRK13602 putative ribosomal pr 35.2 97 0.0021 22.9 4.8 35 100-134 26-60 (82)
137 TIGR00065 ftsZ cell division p 35.0 3.2E+02 0.007 26.1 9.5 133 4-157 24-173 (349)
138 TIGR02355 moeB molybdopterin s 34.9 1.2E+02 0.0027 27.1 6.4 43 87-133 103-145 (240)
139 cd03320 OSBS o-Succinylbenzoat 34.2 1.9E+02 0.0041 26.1 7.6 70 84-156 135-206 (263)
140 PF00070 Pyr_redox: Pyridine n 34.0 81 0.0018 22.5 4.2 46 5-50 5-58 (80)
141 cd03315 MLE_like Muconate lact 34.0 1.3E+02 0.0029 27.1 6.6 70 85-155 138-209 (265)
142 COG2257 Uncharacterized homolo 33.8 51 0.0011 25.0 3.0 31 102-134 22-52 (92)
143 COG0547 TrpD Anthranilate phos 33.5 4.3E+02 0.0094 25.2 12.0 92 87-215 135-227 (338)
144 cd03318 MLE Muconate Lactonizi 33.4 1E+02 0.0022 29.4 5.9 50 85-134 197-246 (365)
145 PRK14725 pyruvate kinase; Prov 33.4 2.3E+02 0.0049 29.3 8.5 75 86-160 429-511 (608)
146 PRK08091 ribulose-phosphate 3- 33.2 2.9E+02 0.0063 24.7 8.3 53 101-154 91-145 (228)
147 PF02515 CoA_transf_3: CoA-tra 32.5 33 0.00071 29.6 2.2 58 130-214 1-60 (191)
148 COG1737 RpiR Transcriptional r 32.3 3.1E+02 0.0067 25.1 8.7 100 86-212 114-215 (281)
149 PRK08883 ribulose-phosphate 3- 31.6 2.6E+02 0.0057 24.7 7.8 55 100-155 80-134 (220)
150 PTZ00170 D-ribulose-5-phosphat 31.3 65 0.0014 28.7 4.0 54 101-154 88-143 (228)
151 PRK13396 3-deoxy-7-phosphohept 31.3 3.1E+02 0.0068 26.3 8.7 89 113-208 151-242 (352)
152 PRK05198 2-dehydro-3-deoxyphos 30.7 3.5E+02 0.0076 24.8 8.5 89 113-208 67-158 (264)
153 KOG1615 Phosphoserine phosphat 30.3 27 0.00058 30.6 1.2 93 97-210 11-113 (227)
154 cd00757 ThiF_MoeB_HesA_family 30.2 3.8E+02 0.0083 23.5 10.1 36 97-133 107-142 (228)
155 PRK01018 50S ribosomal protein 30.0 1.3E+02 0.0028 23.0 4.9 34 100-133 31-64 (99)
156 PRK13398 3-deoxy-7-phosphohept 30.0 2.5E+02 0.0055 25.7 7.7 91 113-210 77-171 (266)
157 TIGR01769 GGGP geranylgeranylg 29.9 2E+02 0.0043 25.3 6.6 36 101-136 24-62 (205)
158 PRK15482 transcriptional regul 29.8 3.4E+02 0.0075 24.6 8.7 103 86-215 119-223 (285)
159 TIGR03569 NeuB_NnaB N-acetylne 29.7 3.6E+02 0.0077 25.6 8.8 92 110-208 72-169 (329)
160 PF00218 IGPS: Indole-3-glycer 29.6 2.8E+02 0.006 25.3 7.8 67 88-159 120-188 (254)
161 PRK06683 hypothetical protein; 29.5 1.4E+02 0.003 22.1 4.8 35 100-134 26-60 (82)
162 PF01053 Cys_Met_Meta_PP: Cys/ 29.4 96 0.0021 30.1 5.0 35 101-135 140-179 (386)
163 PF00224 PK: Pyruvate kinase, 29.0 2.5E+02 0.0053 26.8 7.7 77 86-162 173-252 (348)
164 cd07265 2_3_CTD_N N-terminal d 29.0 1.5E+02 0.0034 22.5 5.4 44 35-78 75-118 (122)
165 PLN03033 2-dehydro-3-deoxyphos 28.9 4E+02 0.0086 24.8 8.5 93 113-214 73-168 (290)
166 COG2876 AroA 3-deoxy-D-arabino 28.7 2.4E+02 0.0051 26.0 6.9 99 112-219 94-195 (286)
167 TIGR01362 KDO8P_synth 3-deoxy- 28.7 3.9E+02 0.0086 24.4 8.4 89 113-208 59-150 (258)
168 TIGR03586 PseI pseudaminic aci 28.6 3.7E+02 0.008 25.5 8.7 94 110-209 73-168 (327)
169 COG0269 SgbH 3-hexulose-6-phos 28.3 1.2E+02 0.0025 27.1 4.8 41 100-140 79-119 (217)
170 TIGR03677 rpl7ae 50S ribosomal 27.8 3.1E+02 0.0066 21.7 7.3 37 100-136 41-78 (117)
171 COG1618 Predicted nucleotide k 27.7 3.9E+02 0.0085 22.9 9.3 120 33-154 20-157 (179)
172 cd00308 enolase_like Enolase-s 27.6 2.1E+02 0.0046 25.1 6.6 51 85-135 103-153 (229)
173 COG1159 Era GTPase [General fu 27.4 5.2E+02 0.011 24.2 9.7 112 20-135 3-122 (298)
174 cd07266 HPCD_N_class_II N-term 27.1 1.8E+02 0.0039 22.0 5.5 45 34-78 73-117 (121)
175 TIGR03576 pyridox_MJ0158 pyrid 27.1 4.7E+02 0.01 24.7 9.3 35 100-134 135-175 (346)
176 PF13986 DUF4224: Domain of un 26.8 1.1E+02 0.0024 20.1 3.4 34 154-208 2-35 (47)
177 PRK02412 aroD 3-dehydroquinate 26.6 4.8E+02 0.01 23.5 10.2 45 91-135 97-143 (253)
178 PRK08223 hypothetical protein; 26.6 61 0.0013 30.1 3.0 37 97-134 113-151 (287)
179 KOG3734 Predicted phosphoglyce 26.3 2.8E+02 0.0061 25.6 7.1 111 97-211 87-204 (272)
180 PRK08673 3-deoxy-7-phosphohept 26.2 3.3E+02 0.0072 25.9 7.9 89 113-208 143-234 (335)
181 cd02201 FtsZ_type1 FtsZ is a G 26.1 5.3E+02 0.012 23.9 9.5 130 4-154 7-151 (304)
182 KOG3111 D-ribulose-5-phosphate 25.8 3E+02 0.0065 24.2 6.7 62 90-154 78-139 (224)
183 PRK11145 pflA pyruvate formate 25.6 2E+02 0.0043 25.5 6.1 56 103-158 72-132 (246)
184 PF03808 Glyco_tran_WecB: Glyc 25.5 4E+02 0.0088 22.3 8.3 18 194-211 94-111 (172)
185 TIGR01928 menC_lowGC/arch o-su 25.4 3.5E+02 0.0075 25.3 7.9 68 86-155 183-252 (324)
186 TIGR03127 RuMP_HxlB 6-phospho 25.3 4E+02 0.0086 22.2 8.5 96 86-213 14-111 (179)
187 PF00464 SHMT: Serine hydroxym 25.0 2.9E+02 0.0064 26.9 7.4 51 85-136 154-206 (399)
188 KOG0257 Kynurenine aminotransf 24.4 1.6E+02 0.0035 28.8 5.4 48 85-134 158-212 (420)
189 PF02571 CbiJ: Precorrin-6x re 24.3 51 0.0011 29.9 2.0 86 29-130 6-96 (249)
190 TIGR03278 methan_mark_10 putat 24.2 3.9E+02 0.0084 26.2 8.1 53 101-153 73-132 (404)
191 KOG3361 Iron binding protein i 24.0 79 0.0017 25.8 2.7 33 280-312 85-118 (157)
192 cd03317 NAAAR N-acylamino acid 23.9 3.4E+02 0.0074 25.6 7.7 69 85-155 187-257 (354)
193 cd03325 D-galactonate_dehydrat 23.7 2.4E+02 0.0053 26.7 6.6 71 85-156 185-257 (352)
194 PRK08133 O-succinylhomoserine 23.7 4.2E+02 0.0091 25.4 8.4 36 100-135 145-184 (390)
195 TIGR00696 wecB_tagA_cpsF bacte 23.5 4.6E+02 0.01 22.3 8.9 19 114-132 35-53 (177)
196 TIGR02495 NrdG2 anaerobic ribo 23.5 4.4E+02 0.0096 22.1 10.0 104 87-208 47-160 (191)
197 PRK06598 aspartate-semialdehyd 23.4 6.1E+02 0.013 24.5 9.2 96 23-138 4-101 (369)
198 PF10678 DUF2492: Protein of u 23.3 1.8E+02 0.0039 21.5 4.3 34 13-46 27-60 (78)
199 PRK11337 DNA-binding transcrip 23.2 5E+02 0.011 23.5 8.5 103 86-215 124-228 (292)
200 TIGR01927 menC_gamma/gm+ o-suc 23.2 4.2E+02 0.0092 24.6 8.0 68 85-155 163-235 (307)
201 PRK14057 epimerase; Provisiona 23.0 2.3E+02 0.005 25.8 5.9 51 101-154 98-159 (254)
202 PRK11430 putative CoA-transfer 23.0 91 0.002 30.1 3.6 65 124-213 68-132 (381)
203 PRK12457 2-dehydro-3-deoxyphos 22.8 6.2E+02 0.013 23.5 8.7 94 113-215 73-169 (281)
204 PRK08745 ribulose-phosphate 3- 22.5 1.3E+02 0.0028 26.8 4.2 55 100-155 84-138 (223)
205 cd03316 MR_like Mandelate race 22.5 2.1E+02 0.0046 26.9 6.0 70 85-155 198-269 (357)
206 PRK08005 epimerase; Validated 22.4 1.3E+02 0.0027 26.6 4.0 53 101-154 81-133 (210)
207 TIGR02778 ligD_pol DNA polymer 22.3 1.6E+02 0.0034 26.7 4.7 37 184-220 130-166 (245)
208 TIGR03609 S_layer_CsaB polysac 22.3 5.9E+02 0.013 23.1 10.3 72 95-166 58-144 (298)
209 cd04861 LigD_Pol_like LigD_Pol 22.1 1.6E+02 0.0036 26.3 4.7 37 183-219 113-149 (227)
210 PTZ00066 pyruvate kinase; Prov 22.1 4.1E+02 0.0089 26.9 8.0 75 86-160 206-284 (513)
211 PLN02460 indole-3-glycerol-pho 22.1 2.6E+02 0.0057 26.6 6.3 60 98-160 200-262 (338)
212 PF13579 Glyco_trans_4_4: Glyc 21.9 2E+02 0.0044 22.3 5.0 34 100-136 72-105 (160)
213 PTZ00106 60S ribosomal protein 21.8 3.9E+02 0.0084 20.8 6.3 34 100-133 40-73 (108)
214 TIGR02356 adenyl_thiF thiazole 21.7 5.2E+02 0.011 22.2 10.6 36 97-133 107-142 (202)
215 COG0378 HypB Ni2+-binding GTPa 21.5 2.5E+02 0.0055 24.6 5.6 93 70-166 63-160 (202)
216 cd02191 FtsZ FtsZ is a GTPase 21.5 6.6E+02 0.014 23.3 9.4 105 4-129 7-116 (303)
217 cd04866 LigD_Pol_like_3 LigD_P 21.4 1.7E+02 0.0038 26.1 4.7 37 183-219 108-144 (223)
218 cd04865 LigD_Pol_like_2 LigD_P 21.3 1.7E+02 0.0037 26.2 4.7 37 184-220 115-151 (228)
219 PRK13307 bifunctional formalde 21.0 2.1E+02 0.0047 27.8 5.6 56 100-155 249-305 (391)
220 cd06502 TA_like Low-specificit 21.0 1.8E+02 0.0039 26.7 5.1 34 101-134 127-166 (338)
221 cd04862 PaeLigD_Pol_like PaeLi 20.9 1.8E+02 0.0039 26.1 4.7 37 184-220 114-150 (227)
222 COG0157 NadC Nicotinate-nucleo 20.9 2.2E+02 0.0048 26.4 5.3 65 90-156 196-262 (280)
223 TIGR01325 O_suc_HS_sulf O-succ 20.9 4.6E+02 0.01 25.0 8.0 35 101-135 139-177 (380)
224 PF03102 NeuB: NeuB family; I 20.7 5.1E+02 0.011 23.3 7.7 27 110-136 52-78 (241)
225 TIGR03253 oxalate_frc formyl-C 20.4 1.2E+02 0.0026 29.6 3.9 65 124-213 63-127 (415)
226 TIGR02742 TrbC_Ftype type-F co 20.4 1.9E+02 0.0042 23.4 4.4 30 104-133 2-31 (130)
227 PRK15447 putative protease; Pr 20.4 5.7E+02 0.012 23.7 8.2 64 101-164 28-104 (301)
228 PRK04175 rpl7ae 50S ribosomal 20.3 4.5E+02 0.0097 20.9 7.8 36 101-136 46-82 (122)
229 TIGR03853 matur_matur probable 20.0 2.3E+02 0.005 20.9 4.2 34 13-46 25-58 (77)
No 1
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=9.4e-39 Score=297.91 Aligned_cols=253 Identities=22% Similarity=0.336 Sum_probs=216.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++++|+|++.+..
T Consensus 35 ~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~-- 112 (306)
T PRK11142 35 QVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHA-- 112 (306)
T ss_pred eecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeC--
Confidence 457899999999999999999999999999999999999999999999999888888999999999988999876653
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.....+++++++.+.+.+++++++|+++..+.+.+..+++.+++.++++++|++... .....+++++|++++|++|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~~~~~~~~~~dil~~n~~Ea~ 190 (306)
T PRK11142 113 GANAALTPALVEAHRELIANADALLMQLETPLETVLAAAKIAKQHGTKVILNPAPAR--ELPDELLALVDIITPNETEAE 190 (306)
T ss_pred CccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEECCCCc--ccCHHHHhhCCEEcCCHHHHH
Confidence 234568888887666778999999999877778888999999999999999997532 223568899999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++... .+.++ ..++++.+.+.|++.+|||+|++|++++.+++
T Consensus 191 ~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~-------------------- 234 (306)
T PRK11142 191 KLTGIRV------------EDDDD----AAKAAQVLHQKGIETVLITLGSRGVWLSENGE-------------------- 234 (306)
T ss_pred HHhCCCC------------CChHH----HHHHHHHHHHhCCCeEEEEECCCcEEEEeCCc--------------------
Confidence 8876411 11111 24556777778999999999999999876543
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~~ 320 (327)
.+++|+++++++|||||||+|+|||++++++|+++++|+++|+++++++++..
T Consensus 235 --------------------------~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~~~~ 287 (306)
T PRK11142 235 --------------------------GQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAVTRK 287 (306)
T ss_pred --------------------------ceeccCCCcccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCC
Confidence 67889988999999999999999999999999999999999999999988753
No 2
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=2.3e-38 Score=296.79 Aligned_cols=253 Identities=26% Similarity=0.409 Sum_probs=212.8
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.++++++++|++.+.+.. .
T Consensus 36 ~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~ 114 (313)
T PRK09850 36 KFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAIND-M 114 (313)
T ss_pred EEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecC-c
Confidence 357899999999999999999999999999999999999999999999988777888899999999999999876643 2
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
++...+.++.++...+.++++++++++++.+.+....+++.+ .++++++|+++.|....+.++++++|++++|++|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~Ea~ 192 (313)
T PRK09850 115 NISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNA--ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAE 192 (313)
T ss_pred hHhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhc--cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHHHH
Confidence 344557777776655678899999999888777777776644 589999999876654557788999999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++... .+.++ ++++++.+.+.|++.+|||+|++|++++.++++
T Consensus 193 ~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~------------------- 237 (313)
T PRK09850 193 TLSGIAL------------SGRED----VAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGE------------------- 237 (313)
T ss_pred HHhCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCC-------------------
Confidence 9877421 11122 356677787889999999999999999875431
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAA 318 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~ 318 (327)
..++|++++++||||||||+|+|||++++++|+++++|+++|++++++++.
T Consensus 238 --------------------------~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~ 288 (313)
T PRK09850 238 --------------------------SGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALS 288 (313)
T ss_pred --------------------------eEecCCCCcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 456888888999999999999999999999999999999999999999876
No 3
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3.1e-38 Score=292.26 Aligned_cols=252 Identities=25% Similarity=0.386 Sum_probs=217.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.+|+|++..+.
T Consensus 32 ~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~-- 109 (292)
T cd01174 32 ETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVP-- 109 (292)
T ss_pred eecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeC--
Confidence 468999999999999999999999999999999999999999999999998777788999999999988988876643
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
+.+..++++.++.+.+.++.+++++++++.+.+....+++.+++.++++++|++... ....++++++|++++|++|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~~~~~~~~~~dil~~n~~E~~ 187 (292)
T cd01174 110 GANGELTPADVDAALELIAAADVLLLQLEIPLETVLAALRAARRAGVTVILNPAPAR--PLPAELLALVDILVPNETEAA 187 (292)
T ss_pred CCCCCCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEeCCCcC--cCcHHHHhhCCEEeeCHHHHH
Confidence 234457788887776788999999999988888888999999999999999997532 233678899999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++... .+.++ ++++++.+.+.|++.||+|+|++|++++.+++
T Consensus 188 ~l~~~~~------------~~~~~----~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~-------------------- 231 (292)
T cd01174 188 LLTGIEV------------TDEED----AEKAARLLLAKGVKNVIVTLGAKGALLASGGE-------------------- 231 (292)
T ss_pred HHhCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEEeCCCceEEEeCCc--------------------
Confidence 9877421 11111 35567778888999999999999999987654
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~ 319 (327)
.+++|+++++++||+||||+|+|||++++++|+++++|+++|+++++++++.
T Consensus 232 --------------------------~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~ 283 (292)
T cd01174 232 --------------------------VEHVPAFKVKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVTR 283 (292)
T ss_pred --------------------------eEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 6788988889999999999999999999999999999999999999998764
No 4
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=3.1e-38 Score=297.45 Aligned_cols=255 Identities=26% Similarity=0.355 Sum_probs=216.1
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEec-CCCCEEEEEecc
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILD-VNGELAAAVASV 80 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d-~~g~~~~~~~~~ 80 (327)
...+||.+.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.++++++ .+|++++.+..
T Consensus 48 ~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~- 126 (326)
T PTZ00292 48 HKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIP- 126 (326)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeC-
Confidence 4578999999999999999999999999999999999999999999999998777889999999998 78888876643
Q ss_pred hhhcccCCHHHHHHHHhhhcC-CcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhh---hhhhhcccccceEEeCC
Q 036840 81 ESIEKFLTPDWIRQFIHHISS-ASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTK---SRRITSVVKYITVVSPN 156 (327)
Q Consensus 81 ~~~~~~l~~~~i~~~~~~l~~-~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~dvv~~n 156 (327)
+++..+++++++...+.+.. ++++++++..+.+....+++.+++.++++++|++.... .+.+.++++++|++++|
T Consensus 127 -g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n 205 (326)
T PTZ00292 127 -GANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLDALKEAKERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVN 205 (326)
T ss_pred -CccccCCHHHHHHHHHHhhhhCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEECCCCccccccccHHHHHhcCCEEcCC
Confidence 34556888888765566777 99999988777788888999999999999999986432 24677888999999999
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCC
Q 036840 157 EDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 157 ~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
++|+..+++... .+.++ +.++.+.+++.|++.||+|+|++|++++.+++.
T Consensus 206 ~~E~~~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~-------------- 255 (326)
T PTZ00292 206 EVEAALITGMEV------------TDTES----AFKASKELQQLGVENVIITLGANGCLIVEKENE-------------- 255 (326)
T ss_pred HHHHHHHhCCCC------------CChhH----HHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCc--------------
Confidence 999999876411 11122 245567777789999999999999999876531
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYA 316 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~ 316 (327)
.+++|++++++||||||||+|+|||+++|++|+++++|+++|+++|+++
T Consensus 256 -------------------------------~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~Aa~~ 304 (326)
T PTZ00292 256 -------------------------------PVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAIS 304 (326)
T ss_pred -------------------------------eEEccCCccccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4788999899999999999999999999999999999999999999998
Q ss_pred HHH
Q 036840 317 AAN 319 (327)
Q Consensus 317 ~~~ 319 (327)
++.
T Consensus 305 v~~ 307 (326)
T PTZ00292 305 VTR 307 (326)
T ss_pred cCC
Confidence 764
No 5
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=8e-38 Score=298.94 Aligned_cols=253 Identities=26% Similarity=0.331 Sum_probs=209.1
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||.+.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++.+.++++.+.+.+.. .
T Consensus 89 ~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~-~ 167 (362)
T PRK09954 89 HCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAIND-T 167 (362)
T ss_pred EEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcC-c
Confidence 457899999999999999999999999999999999999999999999998888888899988888877666655533 2
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.+...++++.++...+.++.+++++++++.+.+....+++.+ +++++++|+.+......+.++++++|++++|++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--~~~~v~~D~~~~~~~~~~~~~l~~~dil~~n~~Ea~ 245 (362)
T PRK09954 168 HILQQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFTLA--DEIPVFVDTVSEFKAGKIKHWLAHIHTLKPTQPELE 245 (362)
T ss_pred hhhhcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHhC--CCCcEEEECCCHHHhhhhhhhhccccEEecCHHHHH
Confidence 234567888777666678889999999888877777777665 479999999864333446788999999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++... .+..+ ++++++.+++.|++.||||+|++|++++..++.
T Consensus 246 ~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~------------------- 290 (362)
T PRK09954 246 ILWGQAI------------TSDAD----RNAAVNALHQQGVQQIFVYLPDESVFCSEKDGE------------------- 290 (362)
T ss_pred HHcCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCc-------------------
Confidence 9876311 01111 256677888899999999999999988765431
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAA 318 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~ 318 (327)
.+++|++++++||||||||+|+|||++++++|+++++|+++|++++++...
T Consensus 291 --------------------------~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~Aal~~~ 341 (362)
T PRK09954 291 --------------------------QFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMACAAISRA 341 (362)
T ss_pred --------------------------eEeccCCCcccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 567788889999999999999999999999999999999999999999854
No 6
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=8.8e-38 Score=292.52 Aligned_cols=248 Identities=23% Similarity=0.335 Sum_probs=210.6
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++... +.+|+.++++++++|+|++... .
T Consensus 51 ~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~ 127 (312)
T cd01168 51 KYIAGGSAANTIRGAAALGGSAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--L 127 (312)
T ss_pred cccCCCHHHHHHHHHHHhcCCeEEEEEeccChhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--c
Confidence 467999999999999999999999999999999999999999999999988754 5789999999998899986543 2
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchh----hhhhhhcccccceEEe
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVKYITVVS 154 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~~~dvv~ 154 (327)
++...+++++++. +.+++++++|+++. .+.+....+++.+++.++++++|++..+ ..+.+.++++++|+++
T Consensus 128 ~~~~~~~~~~~~~--~~l~~~~~v~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~ 205 (312)
T cd01168 128 GAANELSPDDLDW--SLLAKAKYLYLEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILF 205 (312)
T ss_pred chhhcCChhHCCH--HHHccCCEEEEEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEE
Confidence 3345677777753 56889999999874 4557888999999999999999997532 1234678899999999
Q ss_pred CCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCC
Q 036840 155 PNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKP 234 (327)
Q Consensus 155 ~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 234 (327)
+|++|++.+++.. .. ...++++.+++.|++.||||+|++|++++.++.
T Consensus 206 ~n~~E~~~l~~~~---------------~~----~~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~------------- 253 (312)
T cd01168 206 GNEEEAEALAEAE---------------TT----DDLEAALKLLALRCRIVVITQGAKGAVVVEGGE------------- 253 (312)
T ss_pred eCHHHHHHHhCCC---------------CC----ChHHHHHHHHhcCCCEEEEecCCCCeEEEECCE-------------
Confidence 9999999987630 00 124556788888999999999999999987553
Q ss_pred CCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCC-CcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 235 YGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALP-ASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++|+++ +++||||||||+|+|||++++++|+++++|+++|++++
T Consensus 254 ---------------------------------~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~A 300 (312)
T cd01168 254 ---------------------------------VYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAA 300 (312)
T ss_pred ---------------------------------EEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78899988 89999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036840 314 VYAAAN 319 (327)
Q Consensus 314 ~~~~~~ 319 (327)
+++++.
T Consensus 301 a~~v~~ 306 (312)
T cd01168 301 AEVIQQ 306 (312)
T ss_pred HHHHhc
Confidence 999875
No 7
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.5e-36 Score=281.41 Aligned_cols=254 Identities=27% Similarity=0.372 Sum_probs=216.4
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+++++++++++++++.+..
T Consensus 27 ~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-- 104 (293)
T TIGR02152 27 QIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVA-- 104 (293)
T ss_pred eecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEEC--
Confidence 578999999999999999999999999999999999999999999999998877777899999999888888776543
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
+.+..+++++++.+.+.++.+++++++.+.+.+.+..+++.+++.++++++|++.... ....++++++|++++|++|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~~~~~d~l~~n~~E~~ 183 (293)
T TIGR02152 105 GANAELTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIAKKHGVKVILNPAPAIK-DLDDELLSLVDIITPNETEAE 183 (293)
T ss_pred CcCCcCCHHHHHHHHhhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEECCcCcc-cchHHHHhcCCEEccCHHHHH
Confidence 2345688888887767889999999998888888889999999999999999975321 122567899999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++.... +.+ .++++++.+.+.|++.+|||+|++|+++++.+.
T Consensus 184 ~l~~~~~~------------~~~----~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~-------------------- 227 (293)
T TIGR02152 184 ILTGIEVT------------DEE----DAEKAAEKLLEKGVKNVIITLGSKGALLVSKDE-------------------- 227 (293)
T ss_pred HHhCCCCC------------Ccc----hHHHHHHHHHHcCCCeEEEEeCCCceEEEeCCc--------------------
Confidence 98764210 111 235567778888999999999999999987654
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~~ 320 (327)
.+++|+++++++||+||||+|+|||++++++|+++++|+++|++++++++...
T Consensus 228 --------------------------~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~ 280 (293)
T TIGR02152 228 --------------------------SKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRK 280 (293)
T ss_pred --------------------------eeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHccc
Confidence 67888888899999999999999999999999999999999999999988653
No 8
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=5.1e-37 Score=284.17 Aligned_cols=251 Identities=24% Similarity=0.356 Sum_probs=207.2
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||++.|+|.+|++||.++.++|.+|+|.+|+.+.+.|++.||++.++.+.++.+|+.+++.++.+|+|++.+....
T Consensus 27 ~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~ 106 (294)
T cd01166 27 RKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAG 106 (294)
T ss_pred ccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCC
Confidence 46799999999999999999999999999999999999999999999999988888899999999988888877665433
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCC------HHHHHHHHHHHHhCCCCEEEecCchh-------hhhhhhcccc
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLS------PPALAASCKIAAECNIPVWFEPVSVT-------KSRRITSVVK 148 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~------~~~~~~l~~~a~~~~~~v~~d~~~~~-------~~~~~~~~l~ 148 (327)
.+...++.++++ .+.+++++++|+++..+ .+.+..+++.+++.++++++|++... ..+.+.++++
T Consensus 107 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~ 184 (294)
T cd01166 107 SAASRLTPEDLD--EAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLP 184 (294)
T ss_pred ChhHhCChhhCC--HHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHH
Confidence 333456666554 24678999999998542 26677888899999999999997532 1244567889
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
++|++++|++|++.+++.. ..++ +.+.++.+ +.|++.||||+|++|++++.+++
T Consensus 185 ~~dil~~n~~E~~~l~~~~--------------~~~~----~~~~~~~l-~~g~~~viit~G~~G~~~~~~~~------- 238 (294)
T cd01166 185 YVDIVLPSEEEAEALLGDE--------------DPTD----AAERALAL-ALGVKAVVVKLGAEGALVYTGGG------- 238 (294)
T ss_pred hCCEEEcCHHHHHHHhCCC--------------Cchh----HHHHHHhh-cCCccEEEEEEcCCceEEEECCc-------
Confidence 9999999999999886631 0111 13334444 57999999999999999987654
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhccc
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAV 308 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~ 308 (327)
.+++|+++++++||+||||+|+|||+++|++|+++++|+++
T Consensus 239 ---------------------------------------~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~ 279 (294)
T cd01166 239 ---------------------------------------RVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWDLEEALRF 279 (294)
T ss_pred ---------------------------------------eEEeCCCCcccccCCCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 78899988899999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 036840 309 DDAKTVYAAAN 319 (327)
Q Consensus 309 a~aa~~~~~~~ 319 (327)
|++++++++..
T Consensus 280 a~~~aa~~i~~ 290 (294)
T cd01166 280 ANAAAALVVTR 290 (294)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 9
>PLN02967 kinase
Probab=100.00 E-value=3e-37 Score=305.44 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=207.1
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||+++|+|.+|++||.++.|+|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.++++++++|++++.+.. .
T Consensus 239 ~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~-~ 317 (581)
T PLN02967 239 VRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVK-P 317 (581)
T ss_pred eeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEec-C
Confidence 356899999999999999999999999999999999999999999999999988888999999999999988775433 4
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecC-----CCHHHHHHHHHHHHhCCCCEEEecCch---hh-----hhhhhcccc
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDAN-----LSPPALAASCKIAAECNIPVWFEPVSV---TK-----SRRITSVVK 148 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~-----~~~~~~~~l~~~a~~~~~~v~~d~~~~---~~-----~~~~~~~l~ 148 (327)
+++..+.+++++. ..+.+++++|+.+. .+.+.+..+++.+++.|++|+||++.+ |. .+.+.++++
T Consensus 318 gAd~~L~~~di~~--~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~ 395 (581)
T PLN02967 318 CAEDSLSKSEINI--DVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWN 395 (581)
T ss_pred ChhhhCChhhcCH--hHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHH
Confidence 4456677777653 46789999999873 233678889999999999999999843 31 234678999
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
++|+|++|++|+..+++.... +++...+ .....+.....+.+..++..|++.||||+|++|++++..+..
T Consensus 396 ~aDILk~NeeEl~~LtG~~~~-~e~~~~~---~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~------ 465 (581)
T PLN02967 396 LADIIEVTKQELEFLCGIEPT-EEFDTKD---NDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHN------ 465 (581)
T ss_pred hCCEEEECHHHHHHHhCCCcc-ccccccc---cchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCc------
Confidence 999999999999998763110 0000000 000000000123345666679999999999999999876431
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCc--ccccCCCchhHHHHHHHHHHcC-------
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPAS--VVRLTGAGDCLVGGTLASISSG------- 299 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vvdttGAGDaF~ag~l~~l~~g------- 299 (327)
+ ....+|+++++ +||||||||+|+||||++|+++
T Consensus 466 ---------------------------------~----~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~ 508 (581)
T PLN02967 466 ---------------------------------G----AVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDK 508 (581)
T ss_pred ---------------------------------e----eEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCccccc
Confidence 0 03445556665 5999999999999999999974
Q ss_pred CCchhhcccchHHHHHHHHHH
Q 036840 300 LDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 300 ~~~~~al~~a~aa~~~~~~~~ 320 (327)
+++++|++||++++|++++.+
T Consensus 509 ~~LeeaLrfAnAaAAL~vt~~ 529 (581)
T PLN02967 509 GYLEKTIKYAIDCGVIDQWLL 529 (581)
T ss_pred ccHHHHHHHHHHHHHHHhccC
Confidence 679999999999999998754
No 10
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.9e-36 Score=279.77 Aligned_cols=254 Identities=37% Similarity=0.562 Sum_probs=208.6
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++. .++.+|+.++++++.++++++.....
T Consensus 31 ~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~- 108 (288)
T cd01941 31 KQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALADM- 108 (288)
T ss_pred EEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEech-
Confidence 3568999999999999999999999999999999999999999999999887 66778999999999889988644322
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.....+.+++++.+.+.+.+++++++++..+.+.+..+++.+++.+.++++|++.......+.++++++|++++|++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~dii~~n~~E~~ 188 (288)
T cd01941 109 DIYELLTPDFLRKIREALKEAKPIVVDANLPEEALEYLLALAAKHGVPVAFEPTSAPKLKKLFYLLHAIDLLTPNRAELE 188 (288)
T ss_pred HhhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhhhhcCCcEEEEccchHHhccchhhcccceEEeCCHHHHH
Confidence 22334666666666677899999999988888888899999999999999998753322222258899999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEe--ccchhhhhcccCCCCCCCcc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSK--ELLSSMRIGLRKTKPYGFSR 239 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~ 239 (327)
.+++.... +... ..++++.+.+.|++.+|+|+|++|++++.+ ++.
T Consensus 189 ~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~----------------- 235 (288)
T cd01941 189 ALAGALIE------------NNED----ENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVE----------------- 235 (288)
T ss_pred HHhCcccC------------Cchh----HHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCce-----------------
Confidence 98764211 0111 133456667789999999999999999876 221
Q ss_pred cccccccccccCCCccCCCCCCCCCcceeEeecC-CCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHH
Q 036840 240 DLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPA-LPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAA 318 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~ 318 (327)
.+++|+ ++++++|||||||+|.|||++++++|+++++|+++|++++++++.
T Consensus 236 ----------------------------~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 236 ----------------------------TKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred ----------------------------eEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 678888 578899999999999999999999999999999999999999875
No 11
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=5.7e-37 Score=291.25 Aligned_cols=253 Identities=22% Similarity=0.257 Sum_probs=204.9
Q ss_pred ceecCCchHHHHHHHHHcC---C-CceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEE
Q 036840 2 NYVLGGVARNVAECMSKLG---S-KPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAV 77 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG---~-~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~ 77 (327)
+.++||++.|+|.++++|| . ++.++|.+|+|.+|+.+++.|++.||++.++. .++.+|+.+++++++ ++|++..
T Consensus 58 ~~~~GG~~~N~A~~la~lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~ 135 (345)
T PTZ00247 58 SYVPGGSALNTARVAQWMLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVA 135 (345)
T ss_pred eecCCCHHHHHHHHHHHHhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCccccc
Confidence 5679999999999999875 5 89999999999999999999999999998775 567789999998875 6777654
Q ss_pred ecchhhcccCCHHHHHHH--HhhhcCCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchh----hhhhhhcccc
Q 036840 78 ASVESIEKFLTPDWIRQF--IHHISSASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVK 148 (327)
Q Consensus 78 ~~~~~~~~~l~~~~i~~~--~~~l~~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~ 148 (327)
+ .+++..+++++++.. .+.+++++++|+++. .+.+....+++.+++.++++++|++... ....+.++++
T Consensus 136 ~--~ga~~~l~~~~i~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~ 213 (345)
T PTZ00247 136 N--LGAANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP 213 (345)
T ss_pred C--cchhhcCChHHcCcHHHHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh
Confidence 3 234556788777642 346889999999983 4678899999999999999999987432 2245788999
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHH------cCCCEEEEEeCCCceEEEEeccc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLE------KGIRLVVLTLGSDGVLLCSKELL 222 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~ 222 (327)
++|++++|++|++.|++..... ..+. +++++.+.+ .+.+.||||+|++|++++.+++
T Consensus 214 ~~Dil~~N~~Ea~~l~g~~~~~---------~~~~-------~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~- 276 (345)
T PTZ00247 214 YVDILFGNEEEAKTFAKAMKWD---------TEDL-------KEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDG- 276 (345)
T ss_pred hCCEEEeCHHHHHHHhhccCCC---------ccCH-------HHHHHHHHhccccccCCCCEEEEecCCCceEEEECCE-
Confidence 9999999999999998742110 0112 333444432 2578999999999999988654
Q ss_pred hhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCC---cccccCCCchhHHHHHHHHHHcC
Q 036840 223 SSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPA---SVVRLTGAGDCLVGGTLASISSG 299 (327)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~vvdttGAGDaF~ag~l~~l~~g 299 (327)
..++|++++ ++||||||||+|+|||+++|++|
T Consensus 277 ---------------------------------------------~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g 311 (345)
T PTZ00247 277 ---------------------------------------------VTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANG 311 (345)
T ss_pred ---------------------------------------------EEEEeccccCCCCccCCCChHHHHHHHHHHHHHcC
Confidence 567888776 59999999999999999999999
Q ss_pred CCchhhcccchHHHHHHHHHH
Q 036840 300 LDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 300 ~~~~~al~~a~aa~~~~~~~~ 320 (327)
+++++|+++|++++++.++..
T Consensus 312 ~~~~~al~~a~~aAa~~v~~~ 332 (345)
T PTZ00247 312 KDIDRCVEAGHYSAQVIIQHN 332 (345)
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998753
No 12
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=294.96 Aligned_cols=279 Identities=17% Similarity=0.176 Sum_probs=226.4
Q ss_pred ceecCCchHHHHHHHHHcC-CCceEEEeecCC-cchHHHHHHHH--hcCCCccCeeecCCCCceEEEEEecCCCCEEEEE
Q 036840 2 NYVLGGVARNVAECMSKLG-SKPYMISALGLD-MAGNILLEHWK--SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAV 77 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG-~~v~~i~~vG~D-~~g~~i~~~l~--~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~ 77 (327)
+.++||++.|+|.+|++|| .++.|+|++|+| .+|+.+.+.|+ +.||++.++...+ .+|+.++++++++|+|++..
T Consensus 88 ~~~~GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t 166 (434)
T PRK15074 88 HEFAGGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAI 166 (434)
T ss_pred cccCCCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEE
Confidence 3468999999999999996 999999999999 79999999997 6899999886554 58999999999999999876
Q ss_pred ecchhhcccCCHHHHHHHHhhhcCCcEEEEecCC--------CHHHHHHHHHHHHhCCCCEEEecCchhh----hhhh-h
Q 036840 78 ASVESIEKFLTPDWIRQFIHHISSASVLMVDANL--------SPPALAASCKIAAECNIPVWFEPVSVTK----SRRI-T 144 (327)
Q Consensus 78 ~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~--------~~~~~~~l~~~a~~~~~~v~~d~~~~~~----~~~~-~ 144 (327)
+. +++..+++++++. +.+++++++|+++.. ..+....+++.|++.|++|++|++.+.. ...+ .
T Consensus 167 ~~--GA~~~Lt~edld~--~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e 242 (434)
T PRK15074 167 SP--GHMNQLRPESIPE--DVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQE 242 (434)
T ss_pred ec--ChhhcCChhHCCH--hHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHH
Confidence 53 4456788888774 578999999998742 2577889999999999999999987531 1222 3
Q ss_pred cccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccc--
Q 036840 145 SVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELL-- 222 (327)
Q Consensus 145 ~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~-- 222 (327)
.+++++|++++|++|+..+++. .++ +++++.+.+ +++.||||+|++|++++.....
T Consensus 243 ~l~~~vDILf~NeeEa~~LtG~--------------~d~-------eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~ 300 (434)
T PRK15074 243 FLKEHVSILAMNEDEAEALTGE--------------SDP-------LLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEA 300 (434)
T ss_pred HHHhcCCEEEcCHHHHHHHhCC--------------CCH-------HHHHHHHHc-CCCEEEEEECCCCEEEEecccccc
Confidence 3557999999999999998763 112 344555554 5789999999999999753321
Q ss_pred ---hhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCC---CCcccccCCCchhHHHHHHHHH
Q 036840 223 ---SSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPAL---PASVVRLTGAGDCLVGGTLASI 296 (327)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vvdttGAGDaF~ag~l~~l 296 (327)
..++..++....++..++..++++--|+.+..+ ..++|++ ++++||||||||+|+|||||+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l 368 (434)
T PRK15074 301 KRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRV------------YSHIAPYMGGPEKIMNTNGAGDGALSALLHDI 368 (434)
T ss_pred cCceeeeccccccccccchhcccchhcccccccccc------------ccccCcccCCCCcceeCCCcHHHHHHHHHHHH
Confidence 112345666777889999999988888888777 8999999 7899999999999999999999
Q ss_pred HcCC--------------------CchhhcccchHHHHHHHHH
Q 036840 297 SSGL--------------------DVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 297 ~~g~--------------------~~~~al~~a~aa~~~~~~~ 319 (327)
++|+ ++.+|+++|+.+++.-.+.
T Consensus 369 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~ 411 (434)
T PRK15074 369 TANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQ 411 (434)
T ss_pred HCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhh
Confidence 9998 7999999999998876554
No 13
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=8.2e-37 Score=279.05 Aligned_cols=242 Identities=20% Similarity=0.239 Sum_probs=197.9
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.+ .+|+.++++ .++|+|++.+...+
T Consensus 18 ~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~-~~t~~~~~~-~~~g~r~~~~~~~~ 95 (264)
T cd01940 18 KMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKE-GENAVADVE-LVDGDRIFGLSNKG 95 (264)
T ss_pred eecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcC-CCCceEEEE-ecCCceEEEeecCC
Confidence 4679999999999999999999999999999999999999999999999888765 468887744 56788887654322
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
... ...+.. .....+.+++++|+++..+.+....+++.+++.+++|++|++.++..+.+.++++++|++++|++|..
T Consensus 96 ~~~-~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 172 (264)
T cd01940 96 GVA-REHPFE--ADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGALISFDFSDRWDDDYLQLVCPYVDFAFFSASDLS 172 (264)
T ss_pred cHH-hcccCc--ccHhHHhcCCEEEEcccccHHHHHHHHHHHHHcCCEEEEcCcccCCHHHHHhhcccCCEEEechhhcC
Confidence 211 122211 11245689999999976556778889999999999999999987655556788999999999987642
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
. + .+.++++.+++.+++.+|||+|++|++++.+++
T Consensus 173 ~---------------------~----~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~-------------------- 207 (264)
T cd01940 173 D---------------------E----EVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAV-------------------- 207 (264)
T ss_pred c---------------------c----hHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCe--------------------
Confidence 1 1 124456677788999999999999999987543
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCC-chhhcccchHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLD-VMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~-~~~al~~a~aa~~~~~~~ 319 (327)
.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++++++++.
T Consensus 208 --------------------------~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~ 260 (264)
T cd01940 208 --------------------------FYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGH 260 (264)
T ss_pred --------------------------EEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcc
Confidence 7788988999999999999999999999999999 999999999999999864
No 14
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.4e-36 Score=286.61 Aligned_cols=251 Identities=22% Similarity=0.307 Sum_probs=204.7
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|+.++++++++|+|++.+....
T Consensus 39 ~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~ 118 (330)
T PLN02323 39 KKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNP 118 (330)
T ss_pred eecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCC
Confidence 46789999999999999999999999999999999999999999999999988888889999998888899987765433
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCC-----CHHHHHHHHHHHHhCCCCEEEecCch---h-----hhhhhhcccc
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANL-----SPPALAASCKIAAECNIPVWFEPVSV---T-----KSRRITSVVK 148 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~a~~~~~~v~~d~~~~---~-----~~~~~~~~l~ 148 (327)
+++..+++++++. +.+++++++|+.+.. +......+++.+++.+++|++|++.+ | ..+.+.++++
T Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~ 196 (330)
T PLN02323 119 SADMLLRESELDL--DLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWD 196 (330)
T ss_pred chhccCChHHCCh--HHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHH
Confidence 3444567776653 467889998886531 12445678888999999999999742 1 1244667889
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
++|++++|++|+..+++... .+. .++. .+++.|++.||||+|++|++++.+++
T Consensus 197 ~~dil~~n~~E~~~l~g~~~------------~~~-------~~~~-~~~~~g~~~vvvt~G~~G~~~~~~~~------- 249 (330)
T PLN02323 197 EADIIKVSDEEVEFLTGGDD------------PDD-------DTVV-KLWHPNLKLLLVTEGEEGCRYYTKDF------- 249 (330)
T ss_pred hCCEEEcCHHHHHHHhCCCC------------ccH-------HHHH-HHHhcCCCEEEEecCCCceEEEeCCC-------
Confidence 99999999999999876310 001 1122 34457999999999999999987653
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCC-------
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLD------- 301 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~------- 301 (327)
.+++|+++++++|||||||+|+|||++++++|++
T Consensus 250 ---------------------------------------~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~ 290 (330)
T PLN02323 250 ---------------------------------------KGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEER 290 (330)
T ss_pred ---------------------------------------ceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHH
Confidence 5688999899999999999999999999999986
Q ss_pred chhhcccchHHHHHHHHHH
Q 036840 302 VMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 302 ~~~al~~a~aa~~~~~~~~ 320 (327)
+++|+++|++++++.++.+
T Consensus 291 l~~al~~a~a~Aa~~v~~~ 309 (330)
T PLN02323 291 LREALRFANACGAITTTER 309 (330)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8999999999999988754
No 15
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=2.8e-36 Score=279.47 Aligned_cols=248 Identities=27% Similarity=0.390 Sum_probs=202.9
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||.+.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||++.++.+.++.+|+.++++++++|+|++.+....
T Consensus 24 ~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~ 103 (295)
T cd01167 24 TKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGP 103 (295)
T ss_pred cccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCC
Confidence 46799999999999999999999999999999999999999999999998887778899999999988899988775432
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCC-----CHHHHHHHHHHHHhCCCCEEEecCch---hh-----hhhhhcccc
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANL-----SPPALAASCKIAAECNIPVWFEPVSV---TK-----SRRITSVVK 148 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~a~~~~~~v~~d~~~~---~~-----~~~~~~~l~ 148 (327)
........+ + ..+.+++++++++.+.. ..+....+++.+++.++++++|++.. |. .+.+.++++
T Consensus 104 ~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~ 180 (295)
T cd01167 104 AADLLLDTE-L--NPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLE 180 (295)
T ss_pred cHhhhcCcc-C--ChhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHH
Confidence 211111111 1 12457889999997531 13557788889999999999999742 11 234677899
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
++|++++|++|+..+++.. .. .++++.+.+.|++.+|||+|++|++++.+++
T Consensus 181 ~~d~l~~n~~E~~~l~~~~--------------~~-------~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~------- 232 (295)
T cd01167 181 LADIVKLSDEELELLFGEE--------------DP-------EEIAALLLLFGLKLVLVTRGADGALLYTKGG------- 232 (295)
T ss_pred hCCEEEecHHHHHHHhCCC--------------CH-------HHHHHHHhhcCCCEEEEecCCcceEEEECCc-------
Confidence 9999999999999886631 11 2344667778999999999999999987654
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCC-------C
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGL-------D 301 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-------~ 301 (327)
.+++|+++++++|||||||+|+|||+++|++|+ +
T Consensus 233 ---------------------------------------~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~ 273 (295)
T cd01167 233 ---------------------------------------VGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDE 273 (295)
T ss_pred ---------------------------------------ceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHH
Confidence 688899999999999999999999999999999 9
Q ss_pred chhhcccchHHHHHHHHH
Q 036840 302 VMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 302 ~~~al~~a~aa~~~~~~~ 319 (327)
+++|+++|+++++++++.
T Consensus 274 ~~~a~~~a~~~aa~~~~~ 291 (295)
T cd01167 274 LAEALRFANAVGALTCTK 291 (295)
T ss_pred HHHHHHHHHHhhHHHhcc
Confidence 999999999999998864
No 16
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=8.3e-36 Score=278.08 Aligned_cols=247 Identities=26% Similarity=0.320 Sum_probs=203.6
Q ss_pred eecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchh
Q 036840 3 YVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVES 82 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~ 82 (327)
..+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++.+.++.+|+.+++.++++|+|++.+....+
T Consensus 25 ~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~ 104 (304)
T PRK09434 25 KCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPS 104 (304)
T ss_pred eCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCc
Confidence 46999999999999999999999999999999999999999999999998888888999999999888988875543333
Q ss_pred hcccCCHHHHHHHHhhhcCCcEEEEecCC-----CHHHHHHHHHHHHhCCCCEEEecCch---h-----hhhhhhccccc
Q 036840 83 IEKFLTPDWIRQFIHHISSASVLMVDANL-----SPPALAASCKIAAECNIPVWFEPVSV---T-----KSRRITSVVKY 149 (327)
Q Consensus 83 ~~~~l~~~~i~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~a~~~~~~v~~d~~~~---~-----~~~~~~~~l~~ 149 (327)
+...++.++++. +.+++++|+.+.. ..+...++++.+++.++++++|++.+ | ..+.+.+++++
T Consensus 105 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~ 180 (304)
T PRK09434 105 ADLFLQPQDLPP----FRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALAL 180 (304)
T ss_pred hhhhCCHHHhhh----hcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHh
Confidence 333455666542 5679999997531 12456678888999999999999743 1 12345677899
Q ss_pred ceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHH-cCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 150 ITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLE-KGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 150 ~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
+|++++|++|+..+++. . ..+++++.+.+ .|++.||||+|++|++++.+++
T Consensus 181 ~dil~~n~~e~~~l~g~--------------~-------~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~------- 232 (304)
T PRK09434 181 ADVVKLSEEELCFLSGT--------------S-------QLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQ------- 232 (304)
T ss_pred cceeeCCHHHHHHHhCC--------------C-------CHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCc-------
Confidence 99999999999988663 1 12455677766 6899999999999999987654
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCC------Cc
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGL------DV 302 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~------~~ 302 (327)
.+++|+++++++|||||||+|+|||++++++|+ ++
T Consensus 233 ---------------------------------------~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~ 273 (304)
T PRK09434 233 ---------------------------------------VQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAEL 273 (304)
T ss_pred ---------------------------------------eeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCccchHHH
Confidence 688999999999999999999999999999997 89
Q ss_pred hhhcccchHHHHHHHHHH
Q 036840 303 MQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 303 ~~al~~a~aa~~~~~~~~ 320 (327)
++|+++|+++|+++++..
T Consensus 274 ~~a~~~a~~~Aa~~v~~~ 291 (304)
T PRK09434 274 AEIIAQAQACGALATTAK 291 (304)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 999999999999988753
No 17
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5.7e-36 Score=294.68 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=199.8
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecC--------CCCceEEEEEecCCCCEEE
Q 036840 4 VLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQK--------DIDTAVVSNILDVNGELAA 75 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~--------~~~t~~~~~~~d~~g~~~~ 75 (327)
.+|| ++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++...+ +.+|+.++++++++|++.+
T Consensus 118 ~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~ 196 (470)
T PLN02341 118 EAGG-NCNFAIAAARLGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGF 196 (470)
T ss_pred cCCh-HHHHHHHHHHcCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCcee
Confidence 3577 799999999999999999999999999999999999999999887654 3579999999998888764
Q ss_pred EEecchhhcccCCHHHH----HHHHhhhcCCcEEEEecC----CCHHHHHHHHHHHHhCCCCEEEecCchh---------
Q 036840 76 AVASVESIEKFLTPDWI----RQFIHHISSASVLMVDAN----LSPPALAASCKIAAECNIPVWFEPVSVT--------- 138 (327)
Q Consensus 76 ~~~~~~~~~~~l~~~~i----~~~~~~l~~~~~v~~~g~----~~~~~~~~l~~~a~~~~~~v~~d~~~~~--------- 138 (327)
.... . .......+.+ +...+.+++++++|+++. ++.+.+..+++.+++.+++|++|++...
T Consensus 197 ~~~~-~-~~~~~~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~ 274 (470)
T PLN02341 197 CSRA-D-FGPEPAFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPD 274 (470)
T ss_pred eecc-c-cccccchhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHH
Confidence 3211 1 0111111111 123356789999999974 5678888999999999999999997531
Q ss_pred hhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcC--CCEEEEEeCCCceEE
Q 036840 139 KSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKG--IRLVVLTLGSDGVLL 216 (327)
Q Consensus 139 ~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~vvvt~G~~G~~~ 216 (327)
..+.+.++++++|++++|++|++.+++. .+ .+++++.+++.| .+.||||+|++|+++
T Consensus 275 ~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~--------------~~-------~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~ 333 (470)
T PLN02341 275 ERRALEHLLRMSDVLLLTSEEAEALTGI--------------RN-------PILAGQELLRPGIRTKWVVVKMGSKGSIL 333 (470)
T ss_pred HHHHHHHHHhhCCEEEecHHHHHHHhCC--------------CC-------HHHHHHHHHhcCCCCCEEEEeeCCCCeEE
Confidence 1245778999999999999999998763 11 244566676666 589999999999999
Q ss_pred EEeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHH
Q 036840 217 CSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASI 296 (327)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l 296 (327)
+++++ .+++|++++++||||||||+|+|||++++
T Consensus 334 ~~~~~----------------------------------------------~~~vpa~~v~vVDTtGAGDaF~Agfl~gl 367 (470)
T PLN02341 334 VTRSS----------------------------------------------VSCAPAFKVNVVDTVGCGDSFAAAIALGY 367 (470)
T ss_pred EECCe----------------------------------------------eEEeCCCCcCCCCCcCccHHHHHHHHHHH
Confidence 88764 68899999999999999999999999999
Q ss_pred HcCCCchhhcccchHHHHHHHHHH
Q 036840 297 SSGLDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 297 ~~g~~~~~al~~a~aa~~~~~~~~ 320 (327)
++|+++++|+++|++++++.++..
T Consensus 368 l~G~~l~eal~~A~a~aA~~v~~~ 391 (470)
T PLN02341 368 IHNLPLVNTLTLANAVGAATAMGC 391 (470)
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999987654
No 18
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.6e-36 Score=295.98 Aligned_cols=268 Identities=15% Similarity=0.182 Sum_probs=199.3
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEec--CCCCEEEEEec
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILD--VNGELAAAVAS 79 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d--~~g~~~~~~~~ 79 (327)
..++||+++|+|++|++||.++.|+|++|+|.+|+.+++.|++.||+++++.+.++.+|+.+++.++ .+| +.+.+..
T Consensus 168 ~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~ 246 (496)
T PLN02543 168 ARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETV 246 (496)
T ss_pred EeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEec
Confidence 4679999999999999999999999999999999999999999999999999988889999998874 455 4444222
Q ss_pred chhhcccCCHHHHHHHHhhhcCCcEEEEecCC---C--HHHHHHHHHHHHhCCCCEEEecCc---hhh-----hhhhhcc
Q 036840 80 VESIEKFLTPDWIRQFIHHISSASVLMVDANL---S--PPALAASCKIAAECNIPVWFEPVS---VTK-----SRRITSV 146 (327)
Q Consensus 80 ~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~---~--~~~~~~l~~~a~~~~~~v~~d~~~---~~~-----~~~~~~~ 146 (327)
..+++..+.+++++. +.+++++++|+++.. + .+....+++.|++.|++|+||++. .|. .+.+.++
T Consensus 247 ~~gA~~~L~~~di~~--~~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~ 324 (496)
T PLN02543 247 KEAAEDSLLASELNL--AVLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKA 324 (496)
T ss_pred CCCHHHhCChhhcCH--hHhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHH
Confidence 344455677777664 467899999998742 1 367788899999999999999984 332 2346778
Q ss_pred cccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHH--------------hcHHHHHHHHHHcCCCEEEEEeCCC
Q 036840 147 VKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLF--------------QTLKPAILVLLEKGIRLVVLTLGSD 212 (327)
Q Consensus 147 l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~g~~~vvvt~G~~ 212 (327)
++++|++++|++|+..|++.... +... ..+++.+. ...+. +..+++.|++.||||+|.+
T Consensus 325 l~~aDIl~~SeeEa~~Ltg~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~VVVT~G~~ 397 (496)
T PLN02543 325 WNEADIIEVSRQELEFLLDEDYY-ERKR-----NYPPQYYAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKLLLVTDGTL 397 (496)
T ss_pred HHhCCEEEecHHHHHHHhCCCcc-cccc-----cccchhhhhhhhhhhcccccccCCHHH-HHHHHHCCCCEEEEEcCCC
Confidence 89999999999999998763100 0000 00011000 01122 3566677999999999999
Q ss_pred ceEEEEeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHH
Q 036840 213 GVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGT 292 (327)
Q Consensus 213 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~ 292 (327)
|+++++++... ...+.. ..+++++ +||||||||+|+|||
T Consensus 398 Ga~~~t~~~~g-----------------------------~v~~~~---------~~~v~~~---~VDTTGAGDAF~AGf 436 (496)
T PLN02543 398 RIHYYTPKFDG-----------------------------VVVGTE---------DVLITPF---TCDRTGSGDAVVAAI 436 (496)
T ss_pred cEEEEECCCcc-----------------------------cccccc---------cccCCCC---CcCCCchHHHHHHHH
Confidence 99998764210 000000 1223332 489999999999999
Q ss_pred HHHHHc-------CCCchhhcccchHHHHHHHHHH
Q 036840 293 LASISS-------GLDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 293 l~~l~~-------g~~~~~al~~a~aa~~~~~~~~ 320 (327)
|++|+. ++++++|++||++++++.++.+
T Consensus 437 L~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~ 471 (496)
T PLN02543 437 MRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTI 471 (496)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHHcCC
Confidence 999985 7899999999999999998754
No 19
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.4e-35 Score=277.38 Aligned_cols=249 Identities=18% Similarity=0.241 Sum_probs=197.5
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+| +|+.+++.|++.||++.++...+ .|+.+..+++ +|++++.+....
T Consensus 31 ~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~~~~~--~t~~~~~~~~-~g~~~~~~~~~~ 106 (309)
T TIGR01231 31 SKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFYKISG--ETRNCIAILH-EGQQTEILEQGP 106 (309)
T ss_pred eecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEEECCC--CCEEeEEEEe-CCCEEEEeCCCC
Confidence 4679999999999999999999999999975 89999999999999999876543 5777766664 577876554321
Q ss_pred hhcccCCH----HHHHHHHhhhcCCcEEEEecCC----CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTP----DWIRQFIHHISSASVLMVDANL----SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~----~~i~~~~~~l~~~~~v~~~g~~----~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
.+.. ..++...+.+++++++|+++.. +...+..+++.+++.++++++|++.... ..+.+.+.++|++
T Consensus 107 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~dil 181 (309)
T TIGR01231 107 ----EISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGATL-QTVLENPAKPTVI 181 (309)
T ss_pred ----CCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHHH-HHHHhccCCCeEE
Confidence 1222 2233344567899999999853 4567889999999999999999986432 2344556789999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|++.+++.... .+.++ +.++++.+++.|++.|++|+|++|++++.+++
T Consensus 182 ~~n~~E~~~l~g~~~~-----------~~~~~----~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~------------ 234 (309)
T TIGR01231 182 KPNIEELSQLLNQELT-----------EDLES----LKQALSQPLFSGIEWIIVSLGAQGAFAKHGHT------------ 234 (309)
T ss_pred cCCHHHHHHHhCCCCC-----------CCHHH----HHHHHHHHHHcCCCEEEEccCCCceEEEeCCe------------
Confidence 9999999998763110 11222 24455666678999999999999999987543
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++|+++++++|||||||+|+|||+++|++|+++++|+++|++++
T Consensus 235 ----------------------------------~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~a 280 (309)
T TIGR01231 235 ----------------------------------FYKVNIPTISVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLG 280 (309)
T ss_pred ----------------------------------eEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6788888889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 314 VYAAANV 320 (327)
Q Consensus 314 ~~~~~~~ 320 (327)
+++++..
T Consensus 281 a~~~~~~ 287 (309)
T TIGR01231 281 MLNAQEA 287 (309)
T ss_pred HHHhcCc
Confidence 9998643
No 20
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.7e-35 Score=273.95 Aligned_cols=247 Identities=19% Similarity=0.273 Sum_probs=198.9
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+. +.+|+.++++++++|+|++....
T Consensus 32 ~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~-- 107 (289)
T cd01944 32 SYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFISIS-- 107 (289)
T ss_pred eeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEEEeC--
Confidence 467999 99999999999999999999999999999999999999999987764 56788888888888999876553
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCC------CHHHHHHHHHHHHhCCCCEEEecCchh---hhhhhhcccccceE
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANL------SPPALAASCKIAAECNIPVWFEPVSVT---KSRRITSVVKYITV 152 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~------~~~~~~~l~~~a~~~~~~v~~d~~~~~---~~~~~~~~l~~~dv 152 (327)
+.+..+++++++.. .+.+++++|+++.. +.+.+..+++.++ .++++++|++.+. ..+.+.++++++|+
T Consensus 108 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~ 184 (289)
T cd01944 108 GAEQDWSTEWFATL--TVAPYDYVYLSGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRISDIPDTILQALMAKRPI 184 (289)
T ss_pred CccCCCCHHHhccc--cCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccccCHHHHHHHHhcCCE
Confidence 22345677766542 36789999998742 2344445555433 5789999998643 23457788999999
Q ss_pred EeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 153 VSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 153 v~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
+++|++|++.+++... +. ...+++.+.+.+++.||||+|++|++++.+++.
T Consensus 185 ~~~n~~E~~~l~g~~~--------------~~-----~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~---------- 235 (289)
T cd01944 185 WSCNREEAAIFAERGD--------------PA-----AEASALRIYAKTAAPVVVRLGSNGAWIRLPDGN---------- 235 (289)
T ss_pred EccCHHHHHHHhCCCC--------------cc-----hHHHHHHHHhccCCeEEEEECCCcEEEEecCCC----------
Confidence 9999999999877411 11 023356677788999999999999999875432
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++|+++++++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 236 -----------------------------------~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~ 280 (289)
T cd01944 236 -----------------------------------THIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAA 280 (289)
T ss_pred -----------------------------------eEEecCCCCCCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 577888888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 313 TVYAAAN 319 (327)
Q Consensus 313 ~~~~~~~ 319 (327)
++++++.
T Consensus 281 aa~~~~~ 287 (289)
T cd01944 281 AAIVVTR 287 (289)
T ss_pred HHhhhcc
Confidence 9999864
No 21
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.7e-35 Score=283.06 Aligned_cols=248 Identities=21% Similarity=0.265 Sum_probs=200.2
Q ss_pred ceecCCchHHHHHHHHH-cCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecc
Q 036840 2 NYVLGGVARNVAECMSK-LGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASV 80 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~-LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~ 80 (327)
+.++||++.|++.+|++ ||.++.++|++|+|.+|+.+++.|++.||+++++... +.+|+.++++++++|+|++...
T Consensus 82 ~~~~GGsa~N~a~~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~-~~~Tg~~~v~v~~dgert~~~~-- 158 (367)
T PLN02379 82 KTMAGGSVANTIRGLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAK-KGPTAQCVCLVDALGNRTMRPC-- 158 (367)
T ss_pred eecCCCHHHHHHHHHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccC-CCCCceEEEEECCCCCccccCC--
Confidence 35689999999999996 9999999999999999999999999999999877554 4589999999999999886422
Q ss_pred hhhcccCCHHHHHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHHHhCCCCEEEecCchh----hhhhhhcccc--cceEE
Q 036840 81 ESIEKFLTPDWIRQFIHHISSASVLMVDAN-LSPPALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVK--YITVV 153 (327)
Q Consensus 81 ~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~-~~~~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~--~~dvv 153 (327)
.+....++++++.. +.+++++++|++.. .+.+...++++.|++.+++|++|++... .++.+.++++ ++|++
T Consensus 159 lg~~~~l~~~~~~~--~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDil 236 (367)
T PLN02379 159 LSSAVKLQADELTK--EDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLC 236 (367)
T ss_pred ccccccCChhHCCH--HHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEE
Confidence 12233455655542 46789999999942 4678899999999999999999998642 2344566664 89999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|+..+++.... .+ .+++.+ +++.+++.+|||+|++|++++.+++
T Consensus 237 f~Ne~Ea~~l~~~~~~-----------~~-------~~~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~~------------ 285 (367)
T PLN02379 237 FANEDEARELLRGEQE-----------SD-------PEAALE-FLAKYCNWAVVTLGSKGCIARHGKE------------ 285 (367)
T ss_pred EcCHHHHHHHhcCCCC-----------CC-------HHHHHH-HHHhcCCEEEEEECCCCeEEEECCE------------
Confidence 9999999998763110 01 122333 4456789999999999999987654
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCC-CcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALP-ASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++|+++ .++||||||||+|+|||++++++|+++++|+++|+++
T Consensus 286 ----------------------------------~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~~g~~a 331 (367)
T PLN02379 286 ----------------------------------VVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACS 331 (367)
T ss_pred ----------------------------------EEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 78889887 4799999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 313 TVYAAAN 319 (327)
Q Consensus 313 ~~~~~~~ 319 (327)
++..+..
T Consensus 332 Aa~vi~~ 338 (367)
T PLN02379 332 GGSVVRA 338 (367)
T ss_pred HHHHHhc
Confidence 9887654
No 22
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=276.79 Aligned_cols=252 Identities=26% Similarity=0.384 Sum_probs=211.3
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
++.+||++.|+|+++++||.++.++|++|+|.+|+.+++.|++.||+++++......+|+.+.++++++|+|.+.+....
T Consensus 33 ~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~ 112 (311)
T COG0524 33 KVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGA 112 (311)
T ss_pred eecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCc
Confidence 45788889999999999999999999999999999999999999999999988888789999999999999999887644
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchhh---hhhhhcccccceEEeC
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVTK---SRRITSVVKYITVVSP 155 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~dvv~~ 155 (327)
+...+.++.++. ..+...+++|+.+. .+++....+++.+++.++++++|++.+.. .+.+..+++++|++++
T Consensus 113 -a~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~ 189 (311)
T COG0524 113 -AALLLTPEDLDE--DELAGADVLHISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWDRELLEELLALADILFP 189 (311)
T ss_pred -ccccCChHHcCh--HHHhhcCeeeEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccchhhHHHHHhhCCEEeC
Confidence 455578877764 45678999998763 34478899999999999999999987543 3667889999999999
Q ss_pred CHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCC
Q 036840 156 NEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPY 235 (327)
Q Consensus 156 n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~ 235 (327)
|++|+..+++. . .+. .++...++..+++.+|+|+|++|+++++.++.
T Consensus 190 n~~E~~~l~g~-~------------~~~-------~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~------------- 236 (311)
T COG0524 190 NEEEAELLTGL-E------------EDA-------EAAAALLLAKGVKTVVVTLGAEGAVVFTGGGE------------- 236 (311)
T ss_pred CHHHHHHHhCC-C------------ccH-------HHHHHHHhhcCCCEEEEEeCCCcEEEEeCCCc-------------
Confidence 99999998773 0 011 22335567789999999999999999987541
Q ss_pred CCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHH
Q 036840 236 GFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVY 315 (327)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~ 315 (327)
.+....+.+++++||||||||+|+|||++++++|+++++|+++|++++++
T Consensus 237 ------------------------------~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~ 286 (311)
T COG0524 237 ------------------------------VTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAAL 286 (311)
T ss_pred ------------------------------eeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhh
Confidence 01333446778999999999999999999999999999999999999998
Q ss_pred HHHH
Q 036840 316 AAAN 319 (327)
Q Consensus 316 ~~~~ 319 (327)
.++.
T Consensus 287 ~~~~ 290 (311)
T COG0524 287 AVTR 290 (311)
T ss_pred hhcc
Confidence 8754
No 23
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-35 Score=287.95 Aligned_cols=249 Identities=22% Similarity=0.217 Sum_probs=201.5
Q ss_pred ceecCCchHHHHHHHHHcC--------CCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCE
Q 036840 2 NYVLGGVARNVAECMSKLG--------SKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGEL 73 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG--------~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~ 73 (327)
+.++||++.|+|.+|++|| .++.++|.+|+|.+|+.+++.|++.||++.++.+ .+.+|+.++++++++|+|
T Consensus 122 ~~~~GG~~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~ger 200 (426)
T PLN02813 122 KASAGGSLSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQR 200 (426)
T ss_pred eEecCcHHHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCc
Confidence 4679999999999999999 7999999999999999999999999999987764 456899999999999999
Q ss_pred EEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC---CC--HHHHHHHHHHHHhCCCCEEEecCchh----hh-hhh
Q 036840 74 AAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN---LS--PPALAASCKIAAECNIPVWFEPVSVT----KS-RRI 143 (327)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~---~~--~~~~~~l~~~a~~~~~~v~~d~~~~~----~~-~~~ 143 (327)
++.++. +++..++++++. .+.+++++++|+++. .+ .+.+..+++.+++.++++++|++... .+ ..+
T Consensus 201 tii~~~--Ga~~~l~~~~~~--~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~ 276 (426)
T PLN02813 201 TMLSYQ--GTSSTVNYDSCL--ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFW 276 (426)
T ss_pred eeeecc--CchhhCCccccC--HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHH
Confidence 887654 223345544432 356789999999873 23 25678889999999999999987531 11 223
Q ss_pred hcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccch
Q 036840 144 TSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLS 223 (327)
Q Consensus 144 ~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~ 223 (327)
..+++++|++++|++|+..+++.... .+ .+++.+.|. .+++.||||+|++|++++.+++
T Consensus 277 ~~ll~~vDil~~Ne~Ea~~l~g~~~~-----------~~-------~~~a~~~L~-~~~~~VVVT~G~~Ga~~~~~~~-- 335 (426)
T PLN02813 277 DVMGNYADILFANSDEARALCGLGSE-----------ES-------PESATRYLS-HFCPLVSVTDGARGSYIGVKGE-- 335 (426)
T ss_pred HHHHhcCCEEEeCHHHHHHHhCCCCC-----------CC-------HHHHHHHHH-cCCCEEEEEeCCCCeEEEECCE--
Confidence 44568999999999999998764100 11 134444444 6889999999999998877654
Q ss_pred hhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCC-Cc
Q 036840 224 SMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGL-DV 302 (327)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~-~~ 302 (327)
.+++|++++++||||||||+|+|||++++++|+ ++
T Consensus 336 --------------------------------------------~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~l 371 (426)
T PLN02813 336 --------------------------------------------AVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSDL 371 (426)
T ss_pred --------------------------------------------EEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCCH
Confidence 788999999999999999999999999999999 99
Q ss_pred hhhcccchHHHHHHHHHH
Q 036840 303 MQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 303 ~~al~~a~aa~~~~~~~~ 320 (327)
++|+++|++++++.+...
T Consensus 372 ~~al~~A~a~Aa~~v~~~ 389 (426)
T PLN02813 372 RGMGELAARVAATVVGQQ 389 (426)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 999999999999988653
No 24
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=2.4e-35 Score=275.87 Aligned_cols=247 Identities=19% Similarity=0.249 Sum_probs=194.7
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||++.|+|.+|++||.++.++|.+|+ .+|+.+++.|++ ||++.++.. + .+|+.+.++++ +|++++.+.. +
T Consensus 32 ~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~-~-~~t~~~~~~~~-~g~~~~~~~~-~ 105 (309)
T PRK13508 32 SKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAFYKI-K-GETRNCIAILH-EGQQTEILEK-G 105 (309)
T ss_pred eecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceEEEC-C-CCCeeeEEEEe-CCCEEEEECC-C
Confidence 467999999999999999999999999996 689999999999 999987544 3 35777777765 6777765533 2
Q ss_pred hhcccCCHHHH----HHHHhhhcCCcEEEEecCCC----HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTPDWI----RQFIHHISSASVLMVDANLS----PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~~~i----~~~~~~l~~~~~v~~~g~~~----~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
..+..++. ..+.+.+++++++|+++..+ .+....+++.+++.|+++++|++.... ..+...+..+|++
T Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~dii 181 (309)
T PRK13508 106 ---PEISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAAL-QAVLESPYKPTVI 181 (309)
T ss_pred ---CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHHH-HHHHhccCCceEE
Confidence 12444433 23345678999999998542 466788899999999999999986432 2233345789999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|+..+++.... .+.++ +.+.++.+++.|++.||||+|++|++++.+++
T Consensus 182 ~~n~~E~~~l~g~~~~-----------~~~~~----~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~------------ 234 (309)
T PRK13508 182 KPNIEELSQLLGKEVS-----------EDLDE----LKEVLQQPLFEGIEWIIVSLGADGAFAKHNDT------------ 234 (309)
T ss_pred ccCHHHHHHHhCCCCC-----------CCHHH----HHHHHHHHHHcCCCEEEEecCCCceEEEeCCc------------
Confidence 9999999998763110 11222 24555666677999999999999998876543
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++|++++++||||||||+|+|||+++|++|+++++|+++|++++
T Consensus 235 ----------------------------------~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~a 280 (309)
T PRK13508 235 ----------------------------------FYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLG 280 (309)
T ss_pred ----------------------------------eEEEeCCCccccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6788998999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036840 314 VYAAAN 319 (327)
Q Consensus 314 ~~~~~~ 319 (327)
+++++.
T Consensus 281 a~~~~~ 286 (309)
T PRK13508 281 MLNAQE 286 (309)
T ss_pred HHHhcC
Confidence 999854
No 25
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.3e-35 Score=273.68 Aligned_cols=244 Identities=23% Similarity=0.336 Sum_probs=197.7
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++...++.+|+.+++ .+.++++......
T Consensus 32 ~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~-- 108 (284)
T cd01945 32 AVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISIT-- 108 (284)
T ss_pred EEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEec--
Confidence 4679999999999999999999999999999999999999999999999998877777888765 3445655554332
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.....+..++++. ..+++++++|+++.. ++....+++.+++.++++.+|........ +.++++++|++++|++|+.
T Consensus 109 ~~~~~~~~~~~~~--~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~~dil~~n~~e~~ 184 (284)
T cd01945 109 AIDTQAAPDSLPD--AILGGADAVLVDGRQ-PEAALHLAQEARARGIPIPLDLDGGGLRV-LEELLPLADHAICSENFLR 184 (284)
T ss_pred CCCCCCCcccCCH--HHhCcCCEEEEcCCC-HHHHHHHHHHHHHcCCCeeEeccCCcccc-hHHHhccCCEEEeChhHHh
Confidence 1223344555543 347899999999865 46678899999999998777765433323 6788999999999999998
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+++.. + .++++.+.+.|++.||||+|++|+++++++++
T Consensus 185 ~l~~~~--------------~--------~~~~~~l~~~~~~~vivt~G~~G~~~~~~~~~------------------- 223 (284)
T cd01945 185 PNTGSA--------------D--------DEALELLASLGIPFVAVTLGEAGCLWLERDGE------------------- 223 (284)
T ss_pred hhcCCC--------------H--------HHHHHHHHhcCCcEEEEEECCCCeEEEcCCCC-------------------
Confidence 875530 0 13456677789999999999999999873321
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~ 319 (327)
.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|+++++.
T Consensus 224 --------------------------~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~ 275 (284)
T cd01945 224 --------------------------LFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRG 275 (284)
T ss_pred --------------------------EEecCCCccccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 7888998999999999999999999999999999999999999999998875
No 26
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=4.6e-36 Score=278.27 Aligned_cols=252 Identities=28% Similarity=0.424 Sum_probs=209.8
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++.+|++++++++++|+|++.....
T Consensus 32 ~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~- 110 (301)
T PF00294_consen 32 KRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPG- 110 (301)
T ss_dssp EEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEG-
T ss_pred EEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccc-
Confidence 4689999999999999999999999999999999999999999999999999888889999999999888898776542
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEec-----CCCHHHHHHHHHHHHhCC--CCEEEecCchhhhhhhhcccccceEEe
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDA-----NLSPPALAASCKIAAECN--IPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g-----~~~~~~~~~l~~~a~~~~--~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
....++++.+ ..+.+.+++++++++ ..+......+.+.+++.+ .+++.++......+.+.++++++|+++
T Consensus 111 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~ 187 (301)
T PF00294_consen 111 -ANSDLTPDEL--DEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWDDLREDLKELLPYADILK 187 (301)
T ss_dssp -GGGGGGHHHH--HHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSHHHHHHHHHHHHTSSEEE
T ss_pred -cccccccccc--cccccccccceeecccccccccccceeeecccccccccccccccccccccccchhhhhhccccchhc
Confidence 2344566655 346788999999999 556677778888888777 355555544323567888889999999
Q ss_pred CCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCC
Q 036840 155 PNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKP 234 (327)
Q Consensus 155 ~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 234 (327)
+|++|+..+++... .+.+++ .+.+..++..|++.+|+|+|++|++++++++
T Consensus 188 ~n~~E~~~l~~~~~------------~~~~~~----~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~------------- 238 (301)
T PF00294_consen 188 PNEEEAEALTGSKI------------DDPEDA----LAALRELQARGVKIVIVTLGEDGALYYTNDE------------- 238 (301)
T ss_dssp EEHHHHHHHHTCST------------SSHHHH----HHHHHHHHHTTSSEEEEEEGGGEEEEEETTE-------------
T ss_pred cccccccccccccc------------cchhhh----hccccccchhhhhhhhccccccCcccccccc-------------
Confidence 99999999987521 123332 4555667778999999999999999998654
Q ss_pred CCCcccccccccccccCCCccCCCCCCCCCcceeEeecC-CCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 235 YGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPA-LPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++++ ++++++|||||||+|+|||++++++|+++++|+++|++++
T Consensus 239 ---------------------------------~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~a 285 (301)
T PF00294_consen 239 ---------------------------------SYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAA 285 (301)
T ss_dssp ---------------------------------EEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---------------------------------cccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678888 5679999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036840 314 VYAAAN 319 (327)
Q Consensus 314 ~~~~~~ 319 (327)
++++..
T Consensus 286 a~~v~~ 291 (301)
T PF00294_consen 286 ALKVQQ 291 (301)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 998864
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=2.7e-35 Score=274.21 Aligned_cols=247 Identities=25% Similarity=0.375 Sum_probs=196.2
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++ ..++.+|+.++++++++ .+.+.+....
T Consensus 36 ~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~~~ 112 (304)
T cd01172 36 EIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDTDGI-VDEGRPTTTKTRVIARN-QQLLRVDRED 112 (304)
T ss_pred EecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCCCCcceE-ecCCCCceEEEEEecCC-cEEEEEecCC
Confidence 346888 69999999999999999999999999999999999999999984 55677798888887754 4544443211
Q ss_pred hhcccCCHHHH----HHHHhhhcCCcEEEEec----CCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTPDWI----RQFIHHISSASVLMVDA----NLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~~~i----~~~~~~l~~~~~v~~~g----~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
...++.... +...+.+++++++++++ .++++....+++.+++.++++++|++.... ..++++|++
T Consensus 113 --~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~-----~~~~~~d~l 185 (304)
T cd01172 113 --DSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRDY-----SKYRGATLL 185 (304)
T ss_pred --CCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcch-----hhccCCcEe
Confidence 223443322 33345688999999975 346678889999999999999999986422 567899999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHH-HcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLL-EKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
++|++|++.+++.... +.++ ++++++.++ +.|++.||||+|++|+++++++++
T Consensus 186 ~~n~~E~~~l~~~~~~------------~~~~----~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~---------- 239 (304)
T cd01172 186 TPNEKEAREALGDEIN------------DDDE----LEAAGEKLLELLNLEALLVTLGEEGMTLFERDGE---------- 239 (304)
T ss_pred CCCHHHHHHHhCCCCC------------ChHH----HHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCc----------
Confidence 9999999998764211 1122 244556565 368999999999999999873321
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++
T Consensus 240 -----------------------------------~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~ 284 (304)
T cd01172 240 -----------------------------------VQHIPALAKEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAA 284 (304)
T ss_pred -----------------------------------EEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 313 TVYAAAN 319 (327)
Q Consensus 313 ~~~~~~~ 319 (327)
|++.++.
T Consensus 285 Aa~~~~~ 291 (304)
T cd01172 285 AGVVVGK 291 (304)
T ss_pred hheeeec
Confidence 9987764
No 28
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=5.3e-35 Score=270.76 Aligned_cols=245 Identities=21% Similarity=0.296 Sum_probs=199.1
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||.++|+|.+|++||.++.++|.+|+| +|+.+++.|++.||++.++... .+|+..+.+.+.+++++.....
T Consensus 32 ~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~-- 106 (289)
T cd01164 32 RKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDFVEVA--GETRINVKIKEEDGTETEINEP-- 106 (289)
T ss_pred cccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceEEECC--CCCEEEEEEEeCCCCEEEEeCC--
Confidence 4679999999999999999999999999999 8999999999999999987664 3577787787776665544321
Q ss_pred hhcccCCHHHHHHH----HhhhcCCcEEEEecCCCH----HHHHHHHHHHHhCCCCEEEecCchhhhhhhhccc-ccceE
Q 036840 82 SIEKFLTPDWIRQF----IHHISSASVLMVDANLSP----PALAASCKIAAECNIPVWFEPVSVTKSRRITSVV-KYITV 152 (327)
Q Consensus 82 ~~~~~l~~~~i~~~----~~~l~~~~~v~~~g~~~~----~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l-~~~dv 152 (327)
...+++++++.+ .+.+++++++|+++..+. +....+++.+++.++++++|++... +.+.+ +++|+
T Consensus 107 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~----~~~~~~~~~di 180 (289)
T cd01164 107 --GPEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGEA----LLAALAAKPFL 180 (289)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH----HHHHHhcCCcE
Confidence 123666665543 245678999999986653 6788899999999999999998632 22333 68999
Q ss_pred EeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 153 VSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 153 v~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
+++|++|+..+++... .+.++ ++++++.+++.+++.+|||+|++|++++..++
T Consensus 181 l~~n~~E~~~l~~~~~------------~~~~~----~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~----------- 233 (289)
T cd01164 181 IKPNREELEELFGRPL------------GDEED----VIAAARKLIERGAENVLVSLGADGALLVTKDG----------- 233 (289)
T ss_pred ECCCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEecCCCCCEEEcCCc-----------
Confidence 9999999999876421 11222 35667788888999999999999999886643
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++++++++++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 234 -----------------------------------~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~ 278 (289)
T cd01164 234 -----------------------------------VYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAA 278 (289)
T ss_pred -----------------------------------EEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678888888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 313 TVYAAAN 319 (327)
Q Consensus 313 ~~~~~~~ 319 (327)
++++++.
T Consensus 279 Aa~~~~~ 285 (289)
T cd01164 279 GSATAFS 285 (289)
T ss_pred HHHHhcC
Confidence 9999864
No 29
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=6.8e-35 Score=271.53 Aligned_cols=247 Identities=23% Similarity=0.295 Sum_probs=199.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+| +|+.+++.|++.||+++++...+ .|+.++++++.+|+++.... .+
T Consensus 31 ~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~~~-~~ 106 (304)
T TIGR03828 31 RIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRVPG--ETRINVKIKEPSGTETKLNG-PG 106 (304)
T ss_pred cccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEECCC--CCeeeEEEEeCCCCEEEEEC-CC
Confidence 4689999999999999999999999999999 69999999999999999887653 57778888887887765432 22
Q ss_pred hhcccCCHHHHHHH----HhhhcCCcEEEEecC----CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTPDWIRQF----IHHISSASVLMVDAN----LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~~~i~~~----~~~l~~~~~v~~~g~----~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
..+++..++.+ .+.+++++++|+++. .+.+.+..+++.+++.++++++|++.... ...+....|++
T Consensus 107 ---~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~---~~~~~~~~~i~ 180 (304)
T TIGR03828 107 ---PEISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKVILDTSGEAL---RDGLKAKPFLI 180 (304)
T ss_pred ---CCCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChHHH---HHHHhcCCcEE
Confidence 23566555543 246789999999874 34677889999999999999999986321 11222357899
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|+..+++... .+.++ +.++++.+++.|++.||||+|++|++++.+++
T Consensus 181 ~~n~~E~~~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~------------ 232 (304)
T TIGR03828 181 KPNDEELEELFGREL------------KTLEE----IIEAARELLDLGAENVLISLGADGALLVTKEG------------ 232 (304)
T ss_pred CcCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEccCCCCcEEEcCCc------------
Confidence 999999999876421 11222 35667778888999999999999999987654
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++|+++++++|||||||+|.|||+++|++|+++++|+++|++++
T Consensus 233 ----------------------------------~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~A 278 (304)
T TIGR03828 233 ----------------------------------ALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAG 278 (304)
T ss_pred ----------------------------------eEEEeCCCccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 314 VYAAANV 320 (327)
Q Consensus 314 ~~~~~~~ 320 (327)
+++++..
T Consensus 279 a~~~~~~ 285 (304)
T TIGR03828 279 SAAAFSE 285 (304)
T ss_pred HHHhcCc
Confidence 9988653
No 30
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=6.7e-35 Score=273.13 Aligned_cols=247 Identities=25% Similarity=0.368 Sum_probs=197.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++|| ++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++.+.++.+|+.++.++++++... .+ ...
T Consensus 44 ~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~-~~~ 120 (315)
T TIGR02198 44 EDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLL-RV-DFE 120 (315)
T ss_pred EecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEE-Ee-cCC
Confidence 356888 899999999999999999999999999999999999999999888888888999998888643222 22 211
Q ss_pred hhcccCC----HHHHHHHHhhhcCCcEEEEec----CCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLT----PDWIRQFIHHISSASVLMVDA----NLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~----~~~i~~~~~~l~~~~~v~~~g----~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
. ...++ .+.++.+.+.+++++++++++ .++++....+++.+++.+++|++|++... ...++.+|++
T Consensus 121 ~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~d~l 194 (315)
T TIGR02198 121 E-RDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD-----FSRYRGATLI 194 (315)
T ss_pred C-CCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-----hhhcCCCcEE
Confidence 1 11233 233444456688999999975 34677888999999999999999998531 2357889999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHH-HcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLL-EKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
++|++|++.+++.. .+.+++ ++++..++ +.|++.||||+|++|++++.+++.
T Consensus 195 ~~n~~E~~~l~~~~-------------~~~~~~----~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~---------- 247 (315)
T TIGR02198 195 TPNRKEAEAAVGAC-------------DTEAEL----VQAAEKLLEELDLEALLVTRSEKGMTLFTREGE---------- 247 (315)
T ss_pred CCCHHHHHHHhCCC-------------CCHHHH----HHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCC----------
Confidence 99999999997721 111222 34455555 468999999999999998874321
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++|+++++++|||||||+|.|||++++++|+++++|+++|+++
T Consensus 248 -----------------------------------~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~ 292 (315)
T TIGR02198 248 -----------------------------------PIHIPAQAREVYDVTGAGDTVIATLALALAAGASLEEACRLANAA 292 (315)
T ss_pred -----------------------------------eEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678898888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 313 TVYAAAN 319 (327)
Q Consensus 313 ~~~~~~~ 319 (327)
++++++.
T Consensus 293 aa~~~~~ 299 (315)
T TIGR02198 293 AGVVVGK 299 (315)
T ss_pred hhhhhcc
Confidence 9998764
No 31
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6.4e-35 Score=268.33 Aligned_cols=240 Identities=25% Similarity=0.349 Sum_probs=195.3
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++++...++.+|+.++++++.++++++.... +
T Consensus 32 ~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~ 110 (279)
T cd01942 32 RREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYP-G 110 (279)
T ss_pred eecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecC-C
Confidence 468999999999999999999999999999999999999999999999998777777899999999888888765432 2
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchh---hhhhhhcccccceEEeCCHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVT---KSRRITSVVKYITVVSPNED 158 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~---~~~~~~~~l~~~dvv~~n~~ 158 (327)
....+++++ ....+++++++|+++.. ....+++.+++.++++++|++... ..+.+.++++++|++++|++
T Consensus 111 -~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~ 183 (279)
T cd01942 111 -AMDELEPND---EADPDGLADIVHLSSGP---GLIELARELAAGGITVSFDPGQELPRLSGEELEEILERADILFVNDY 183 (279)
T ss_pred -cccccccCC---chhhhcccCEEEeCCch---HHHHHHHHHHHcCCeEEEcchhhhhhccHHHHHHHHhhCCEEecCHH
Confidence 233444443 12467899999998753 466777788888999999998642 22456788999999999999
Q ss_pred HHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCc
Q 036840 159 ELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFS 238 (327)
Q Consensus 159 E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
|+..+.... +. .+. . ...+++.||+|+|++|++++.++.
T Consensus 184 E~~~l~~~~-~~----------~~~-------~------~~~~~~~vvvt~G~~G~~~~~~~~----------------- 222 (279)
T cd01942 184 EAELLKERT-GL----------SEA-------E------LASGVRVVVVTLGPKGAIVFEDGE----------------- 222 (279)
T ss_pred HHHHHHhhc-CC----------ChH-------H------HhcCCCEEEEEECCCceEEEECCc-----------------
Confidence 996442221 10 000 0 127899999999999999987654
Q ss_pred ccccccccccccCCCccCCCCCCCCCcceeEeecCC-CCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHH
Q 036840 239 RDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPAL-PASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAA 317 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~ 317 (327)
.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|++++
T Consensus 223 -----------------------------~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~ 273 (279)
T cd01942 223 -----------------------------EVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKV 273 (279)
T ss_pred -----------------------------eEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7888887 8899999999999999999999999999999999999999988
Q ss_pred HH
Q 036840 318 AN 319 (327)
Q Consensus 318 ~~ 319 (327)
+.
T Consensus 274 ~~ 275 (279)
T cd01942 274 ER 275 (279)
T ss_pred cc
Confidence 65
No 32
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=2.4e-34 Score=266.59 Aligned_cols=245 Identities=19% Similarity=0.170 Sum_probs=193.4
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
..++||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++...++..++.++++.+++|+|++.+....
T Consensus 32 ~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~ 111 (290)
T cd01939 32 RWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNN 111 (290)
T ss_pred eEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCC
Confidence 46799999999999999999999999999999999999999999999998766655556667777777888877664422
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCC-------CCEEEecCchhhhhhhhcccccceEEe
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECN-------IPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~-------~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
...++.++++. ..+++++++|+++..+ +....+++.+++.+ +++++|+.... +.+.++++++|+++
T Consensus 112 --~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~--~~~~~~l~~~di~~ 184 (290)
T cd01939 112 --LPEVTYDDFSK--IDLTQYGWIHFEGRNP-DETLRMMQHIEEHNNRRPEIRITISVEVEKPR--EELLELAAYCDVVF 184 (290)
T ss_pred --CCCCCHHHHhh--hhhccCCEEEEeccCH-HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc--hhhhhHHhhCCEEE
Confidence 34677777765 2458899999998765 34556667777665 68889986532 34568999999999
Q ss_pred CCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHH--HHcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 155 PNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVL--LEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 155 ~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
+|++|+..+ +. .+++ +++..+ ...+++.||||+|++|++++.+++.
T Consensus 185 ~n~~~~~~~-~~--------------~~~~-------~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~---------- 232 (290)
T cd01939 185 VSKDWAQSR-GY--------------KSPE-------ECLRGEGPRAKKAALLVCTWGDQGAGALGPDGE---------- 232 (290)
T ss_pred EEhHHHHhc-Cc--------------CCHH-------HHHHhhhhhccCCcEEEEEcccCCeEEEcCCCC----------
Confidence 999887653 31 1122 222222 2358899999999999998865432
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCC-cccccCCCchhHHHHHHHHHHcCCC-chhhcccch
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPA-SVVRLTGAGDCLVGGTLASISSGLD-VMQSVAVDD 310 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvdttGAGDaF~ag~l~~l~~g~~-~~~al~~a~ 310 (327)
.+++|+++. ++||||||||+|+|||++++++|++ +++|+++|+
T Consensus 233 -----------------------------------~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~ 277 (290)
T cd01939 233 -----------------------------------YVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGN 277 (290)
T ss_pred -----------------------------------EEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 678898865 6999999999999999999999995 999999999
Q ss_pred HHHHHHHHHH
Q 036840 311 AKTVYAAANV 320 (327)
Q Consensus 311 aa~~~~~~~~ 320 (327)
++++++++..
T Consensus 278 a~aa~~i~~~ 287 (290)
T cd01939 278 RVASQKCTGV 287 (290)
T ss_pred HHHHHHHhhh
Confidence 9999998764
No 33
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.4e-34 Score=264.55 Aligned_cols=231 Identities=20% Similarity=0.229 Sum_probs=188.8
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ ++++.++... +..|+.++++++++|+|++.... .
T Consensus 32 ~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~-~ 108 (265)
T cd01947 32 RESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITVPG-E 108 (265)
T ss_pred eeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEecC-C
Confidence 5679999999999999999999999999999999999999999 9999877654 56899999999988998876532 1
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.. +++++ .+.+++++++|+++..+ ..++++.+++.+ ++++|+........+.++++++|++++|++|+.
T Consensus 109 ~~-----~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~-~~~~d~~~~~~~~~~~~~~~~~d~~~~n~~e~~ 177 (265)
T cd01947 109 RL-----EDDLK--WPILDEGDGVFITAAAV---DKEAIRKCRETK-LVILQVTPRVRVDELNQALIPLDILIGSRLDPG 177 (265)
T ss_pred CC-----cccCC--HhHhccCCEEEEecccc---cHHHHHHHHHhC-CeEeccCccccchhHHHHhhhCCEEEeCHHHHH
Confidence 11 11111 13567899999998642 245566777664 678888765443456788999999999999987
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.+.+ .+.+.+.+++.+|+|+|++|+++++++.
T Consensus 178 ~l~~----------------------------~~~~~~~~~~~viit~G~~Ga~~~~~~~-------------------- 209 (265)
T cd01947 178 ELVV----------------------------AEKIAGPFPRYLIVTEGELGAILYPGGR-------------------- 209 (265)
T ss_pred Hhhh----------------------------HHHHHhccCCEEEEEeCCCCeEEEECCe--------------------
Confidence 7543 1345567899999999999999987653
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAANV 320 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~~ 320 (327)
.+++|+++++++|||||||+|.|||++++++|+++++|+++|++++++.+...
T Consensus 210 --------------------------~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~ 262 (265)
T cd01947 210 --------------------------YNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHF 262 (265)
T ss_pred --------------------------eEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999999999999999999999988653
No 34
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=2.1e-34 Score=263.00 Aligned_cols=236 Identities=18% Similarity=0.172 Sum_probs=190.0
Q ss_pred eecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchh
Q 036840 3 YVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVES 82 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~ 82 (327)
.++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++.+.++ +|+.+++.++ +++|++.....+.
T Consensus 20 ~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~~~ 97 (260)
T PRK09813 20 AFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYTEGV 97 (260)
T ss_pred cccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccCCCc
Confidence 5789999999999999999999999999999999999999999999999887665 6888777765 5777765432221
Q ss_pred -hcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 83 -IEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 83 -~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
....+++.++ +.+.++++++++... ....+++.++++++++++|++..+....+.++++++|+++.|+++..
T Consensus 98 ~~~~~~~~~~~----~~l~~~~~v~~~~~~---~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 170 (260)
T PRK09813 98 MADFALSEEDY----AWLAQYDIVHAAIWG---HAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQED 170 (260)
T ss_pred ccccccCHHHH----HHHHhCCEEEEeccc---hHHHHHHHHHHcCCeEEEEcCCCccHHHHHHhCCceeEEEecCCcch
Confidence 1122343333 346789999996422 23466777888999999999876544456788999999988765311
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
. .++++++.+.+.|++.+|||+|++|++++.+++
T Consensus 171 ----------------------~----~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~~-------------------- 204 (260)
T PRK09813 171 ----------------------E----FLRLKMKAIVARGAGVVIVTLGENGSIAWDGAQ-------------------- 204 (260)
T ss_pred ----------------------H----HHHHHHHHHHHcCCCEEEEEECCCceEEEECCE--------------------
Confidence 1 124556777788999999999999999987653
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~~ 319 (327)
.+++|+++++++|||||||+|+|||++++++|+++++|+++|+++++++++.
T Consensus 205 --------------------------~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 205 --------------------------FWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQY 256 (260)
T ss_pred --------------------------EEecCCcccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999998864
No 35
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=5.5e-34 Score=266.66 Aligned_cols=248 Identities=22% Similarity=0.276 Sum_probs=197.5
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||++.|+|.+|++||.++.+++.+|+ .+|+.+++.|++.||++.++...+. .++..+++++++|++++.+.. +
T Consensus 34 ~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~-~ 110 (309)
T PRK10294 34 VFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDW-TRQNLHVHVEASGEQYRFVMP-G 110 (309)
T ss_pred eecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEEECC-C
Confidence 467899999999999999999999999997 6899999999999999998877543 344445566777887655432 2
Q ss_pred hhcccCCHHHHHHHH---hhhcCCcEEEEecCCC----HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe
Q 036840 82 SIEKFLTPDWIRQFI---HHISSASVLMVDANLS----PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~---~~l~~~~~v~~~g~~~----~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
..++.++++.+. +.+++++++++++..+ .+.+..+++.+++.|+++++|++....... ..++++|+++
T Consensus 111 ---~~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~--~~~~~~~~i~ 185 (309)
T PRK10294 111 ---AALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDALSAA--LAIGNIELVK 185 (309)
T ss_pred ---CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHHHHHH--HhcCCCeEEC
Confidence 136666665533 2467899999988654 477889999999999999999986332111 1246799999
Q ss_pred CCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcC-CCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 155 PNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKG-IRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 155 ~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
+|++|+..+++... .+.++ ++++++.+++.+ ++.+|||+|++|++++.+++
T Consensus 186 ~n~~E~~~l~g~~~------------~~~~~----~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~------------ 237 (309)
T PRK10294 186 PNQKELSALVNRDL------------TQPDD----VRKAAQELVNSGKAKRVVVSLGPQGALGVDSEN------------ 237 (309)
T ss_pred CCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHcCCCCEEEEecCCCceEEEcCCc------------
Confidence 99999999876421 11222 356677887776 89999999999999987654
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++++++++++|||||||+|+|||+++|++|+++++|+++|++++
T Consensus 238 ----------------------------------~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~a 283 (309)
T PRK10294 238 ----------------------------------CIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAG 283 (309)
T ss_pred ----------------------------------cEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5677888889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036840 314 VYAAAN 319 (327)
Q Consensus 314 ~~~~~~ 319 (327)
+++++.
T Consensus 284 a~~v~~ 289 (309)
T PRK10294 284 SAATLN 289 (309)
T ss_pred HHHhcC
Confidence 999875
No 36
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=4.2e-34 Score=266.43 Aligned_cols=247 Identities=23% Similarity=0.303 Sum_probs=200.2
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||.+.|+|.++++||.++.++|.+|+| +|+.+++.|++.||++.++... ..|+.++++.+++|.++..... +
T Consensus 31 ~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~--~~t~~~~~~~~~~g~~~~~~~~-~ 106 (303)
T TIGR03168 31 RKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVK--GETRINVKIKESSGEETELNEP-G 106 (303)
T ss_pred cccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECC--CCCEEeEEEEeCCCCEEEEeCc-C
Confidence 4678999999999999999999999999999 7999999999999999988764 3577777777877776644322 1
Q ss_pred hhcccCCHHHHHHH----HhhhcCCcEEEEecC----CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTPDWIRQF----IHHISSASVLMVDAN----LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~~~i~~~----~~~l~~~~~v~~~g~----~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
..+++++++.+ .+.+++++++|+++. ++.+....+++.+++.+++++||++... ....+..++|++
T Consensus 107 ---~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~~---~~~~~~~~~dil 180 (303)
T TIGR03168 107 ---PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGEA---LREALAAKPFLI 180 (303)
T ss_pred ---CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcHH---HHHHHhcCCcEE
Confidence 23666666543 245889999999874 4567788999999999999999998631 112233579999
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|+..+++... .+.++ ++++++.+++.|++.+|||+|++|++++.+++
T Consensus 181 ~~n~~E~~~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~~------------ 232 (303)
T TIGR03168 181 KPNHEELEELFGREL------------KTEEE----IIEAARELLDRGAENVLVSLGADGALLVTKEG------------ 232 (303)
T ss_pred CCCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHcCCCEEEEeecCCCcEEEeCCc------------
Confidence 999999999887521 11122 35567778888999999999999999987654
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.+++|+++++++|||||||+|.|||++++++|+++++|+++|++++
T Consensus 233 ----------------------------------~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~a 278 (303)
T TIGR03168 233 ----------------------------------ALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAG 278 (303)
T ss_pred ----------------------------------eEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6788988889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 314 VYAAANV 320 (327)
Q Consensus 314 ~~~~~~~ 320 (327)
+++++..
T Consensus 279 a~~~~~~ 285 (303)
T TIGR03168 279 SAAAFSP 285 (303)
T ss_pred HHHhcCC
Confidence 9988753
No 37
>PLN02548 adenosine kinase
Probab=100.00 E-value=1.4e-33 Score=266.57 Aligned_cols=252 Identities=19% Similarity=0.281 Sum_probs=194.0
Q ss_pred ceecCCchHHHHH---HHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEe
Q 036840 2 NYVLGGVARNVAE---CMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVA 78 (327)
Q Consensus 2 ~~~~GG~~~N~a~---~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~ 78 (327)
+..+||++.|++. .|+++|.++.|+|.+|+|.+|+.+++.|++.||+++++. .++.+|+.++++++ +|+|.+...
T Consensus 48 ~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~~~~~ 125 (332)
T PLN02548 48 EYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERSLVAN 125 (332)
T ss_pred eecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCceeeec
Confidence 5679999999854 446679999999999999999999999999999999875 46678999988886 688876543
Q ss_pred cchhhcccCCHHHHHH--HHhhhcCCcEEEEec---CCCHHHHHHHHHHHHhCCCCEEEecCch-hh---hhhhhccccc
Q 036840 79 SVESIEKFLTPDWIRQ--FIHHISSASVLMVDA---NLSPPALAASCKIAAECNIPVWFEPVSV-TK---SRRITSVVKY 149 (327)
Q Consensus 79 ~~~~~~~~l~~~~i~~--~~~~l~~~~~v~~~g---~~~~~~~~~l~~~a~~~~~~v~~d~~~~-~~---~~~~~~~l~~ 149 (327)
. .....++.+.+.. ..+.+..++++|+++ ..+++....+++.+++.+.++.+|++.. +. .+.+.+++++
T Consensus 126 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~ 203 (332)
T PLN02548 126 L--SAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPY 203 (332)
T ss_pred c--chhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhh
Confidence 2 2233455555432 224578899999986 3467788888999999999888888642 21 2457788999
Q ss_pred ceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHH----c--CCCEEEEEeCCCceEEEEeccch
Q 036840 150 ITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLE----K--GIRLVVLTLGSDGVLLCSKELLS 223 (327)
Q Consensus 150 ~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~--g~~~vvvt~G~~G~~~~~~~~~~ 223 (327)
+|++++|++|+..+++....+ ..+. ++++..+.+ . +++.||||+|++|++++.++.
T Consensus 204 ~dil~~n~~E~~~l~g~~~~~---------~~~~-------~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~-- 265 (332)
T PLN02548 204 VDFLFGNETEARTFAKVQGWE---------TEDV-------EEIALKISALPKASGTHKRTVVITQGADPTVVAEDGK-- 265 (332)
T ss_pred CCEEEecHHHHHHHhCccCCC---------cccH-------HHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCe--
Confidence 999999999999987642110 0111 222222322 2 588999999999999886543
Q ss_pred hhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCC---CCcccccCCCchhHHHHHHHHHHcCC
Q 036840 224 SMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPAL---PASVVRLTGAGDCLVGGTLASISSGL 300 (327)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vvdttGAGDaF~ag~l~~l~~g~ 300 (327)
.+++|++ +++++|||||||+|+|||++++++|+
T Consensus 266 --------------------------------------------~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~ 301 (332)
T PLN02548 266 --------------------------------------------VKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGK 301 (332)
T ss_pred --------------------------------------------EEEeccccCCcCccccCCCchHHHHHHHHHHHHcCC
Confidence 5666653 45799999999999999999999999
Q ss_pred CchhhcccchHHHHHHHHH
Q 036840 301 DVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 301 ~~~~al~~a~aa~~~~~~~ 319 (327)
++++|+++|+++|+++++.
T Consensus 302 ~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 302 DIEECVRAGNYAANVIIQR 320 (332)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 38
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=2.6e-33 Score=262.48 Aligned_cols=247 Identities=20% Similarity=0.227 Sum_probs=196.4
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++||++.|+|.+|++||.++.++|.+|+|.+|+. .+.|++.||++.++ +.++ +|+.++.+++++++++..... .
T Consensus 35 ~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~-~ 110 (312)
T PRK09513 35 GLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANRFQ-VVQG-RTRINVKLTEKDGEVTDFNFS-G 110 (312)
T ss_pred eecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCccEE-ECCC-CCEEEEEEEeCCCcEEEEeCC-C
Confidence 578999999999999999999999999999999987 57899999998765 4344 688888888888887754322 1
Q ss_pred hhcccCCHHHHHHH----HhhhcCCcEEEEecCCC----HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE
Q 036840 82 SIEKFLTPDWIRQF----IHHISSASVLMVDANLS----PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV 153 (327)
Q Consensus 82 ~~~~~l~~~~i~~~----~~~l~~~~~v~~~g~~~----~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv 153 (327)
..+++.+.+.+ .+.+++++++|+++..+ .+.+..+++.+++.+.++++|++.... ...+....|++
T Consensus 111 ---~~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~~~~l 184 (312)
T PRK09513 111 ---FEVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREAL---VAGLKAAPWLV 184 (312)
T ss_pred ---CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHHH---HHHhccCCeEE
Confidence 23555554332 35688999999998543 467788888999999999999985321 22234568899
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCC
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~ 233 (327)
++|++|+..+++.... +.+ .+.++++.+.+.|++.||||+|++|++++..++
T Consensus 185 ~~n~~E~~~l~g~~~~------------~~~----~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~------------ 236 (312)
T PRK09513 185 KPNRRELEIWAGRKLP------------ELK----DVIEAAHALREQGIAHVVISLGAEGALWVNASG------------ 236 (312)
T ss_pred cCCHHHHHHHhCCCCC------------CHH----HHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCc------------
Confidence 9999999998774210 111 224566778888999999999999999877654
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
..+.++++++++|||||||+|+|||+++|++|+++++|+++|++++
T Consensus 237 ----------------------------------~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~A 282 (312)
T PRK09513 237 ----------------------------------EWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVS 282 (312)
T ss_pred ----------------------------------eEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5667777889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 036840 314 VYAAANV 320 (327)
Q Consensus 314 ~~~~~~~ 320 (327)
++++...
T Consensus 283 a~~~~~~ 289 (312)
T PRK09513 283 ALAVSQS 289 (312)
T ss_pred HHHhhCC
Confidence 9998753
No 39
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2.4e-34 Score=271.42 Aligned_cols=258 Identities=18% Similarity=0.154 Sum_probs=200.2
Q ss_pred ceecCCchHHHHHHHHHc-CC--Cc--eEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEE
Q 036840 2 NYVLGGVARNVAECMSKL-GS--KP--YMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAA 76 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~L-G~--~v--~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~ 76 (327)
+.++||+++|+|+++++| |. ++ .+++.+|+| +|+.+++.|++.||++.+ ...++.+|+.++++++++++|.+.
T Consensus 22 ~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~ 99 (328)
T cd01943 22 TNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFK 99 (328)
T ss_pred ccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceee
Confidence 467999999999999999 54 66 889999999 999999999999999998 666778899999888888888766
Q ss_pred EecchhhcccCCHHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHHHHHh------CCCCEEEecCchh----hhhhhh
Q 036840 77 VASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSP--PALAASCKIAAE------CNIPVWFEPVSVT----KSRRIT 144 (327)
Q Consensus 77 ~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~--~~~~~l~~~a~~------~~~~v~~d~~~~~----~~~~~~ 144 (327)
+.. ..+..+++++++. ..+..++++|+.+..+. +....+++.+++ .+.++++|++... ..+.+.
T Consensus 100 ~~~--~~~~~~~~~~l~~--~~~~~a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~ 175 (328)
T cd01943 100 YLT--PKKRIDVSDDLNS--TPLIRSSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLL 175 (328)
T ss_pred ecC--ccccccccccccc--ccccCCCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHH
Confidence 543 2235567777664 35778999999886533 677788888888 7888999987531 124577
Q ss_pred cccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcH-HHHHHHHHHcCCCEEEEEeCCCceEEEEe-ccc
Q 036840 145 SVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTL-KPAILVLLEKGIRLVVLTLGSDGVLLCSK-ELL 222 (327)
Q Consensus 145 ~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~vvvt~G~~G~~~~~~-~~~ 222 (327)
++++++|++++|++|+..+++...... ...+.....+ ......+...+++.||||+|++|++++.. ++.
T Consensus 176 ~~l~~~dil~~n~~Ea~~l~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~ 246 (328)
T cd01943 176 QALPRVDVFSPNLEEAARLLGLPTSEP---------SSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGP 246 (328)
T ss_pred HHhccCCEECCCHHHHHHHhCCCCCCc---------cchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCc
Confidence 899999999999999999977421100 0001000000 00111234568999999999999999874 221
Q ss_pred hhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCC---cccccCCCchhHHHHHHHHHHcC
Q 036840 223 SSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPA---SVVRLTGAGDCLVGGTLASISSG 299 (327)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~vvdttGAGDaF~ag~l~~l~~g 299 (327)
.+++|++++ +++|||||||+|+|||+++|++|
T Consensus 247 ---------------------------------------------~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g 281 (328)
T cd01943 247 ---------------------------------------------ELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALT 281 (328)
T ss_pred ---------------------------------------------eEecCCccCCCCcccCCCCchHHHHHHHHHHHHcC
Confidence 678888887 89999999999999999999999
Q ss_pred CCchhhcccchHHHHHHHHH
Q 036840 300 LDVMQSVAVDDAKTVYAAAN 319 (327)
Q Consensus 300 ~~~~~al~~a~aa~~~~~~~ 319 (327)
+++++|+++|+++++++++.
T Consensus 282 ~~~~~al~~a~a~Aa~~v~~ 301 (328)
T cd01943 282 KSIDEACIYGSVAASFAIEQ 301 (328)
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998875
No 40
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-34 Score=260.70 Aligned_cols=248 Identities=22% Similarity=0.329 Sum_probs=193.2
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
.+.+||.++|+|++++|||.++.|||++|+|.||+.+.+.|++.+|+++++..+.+.+|+.+.+++..+|++.+.+....
T Consensus 42 ~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~ga 121 (330)
T KOG2855|consen 42 KTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGA 121 (330)
T ss_pred eecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999998776533
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHH-----HHHHHhCCCCEEEecCchhh--------hhhhhcccc
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAAS-----CKIAAECNIPVWFEPVSVTK--------SRRITSVVK 148 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l-----~~~a~~~~~~v~~d~~~~~~--------~~~~~~~l~ 148 (327)
+..+.++..+...+.++.+.++++..++..+..... ++.+++.+-.+++||+.++. ...+..++.
T Consensus 122 --n~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~ 199 (330)
T KOG2855|consen 122 --NADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWN 199 (330)
T ss_pred --chhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhh
Confidence 334444433333478899999999886543333322 23555666666667764321 123455555
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhc
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIG 228 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~ 228 (327)
.+|++..+++|++.+.+.. . .+.. .|+..+.+.||||+|++||++++++.+
T Consensus 200 ~adv~~~s~~e~~fl~~~~---------------~-------~~~~-~L~~~~~k~viVTlG~kG~~y~tk~~~------ 250 (330)
T KOG2855|consen 200 MADVIKVSSQELAFLTGIE---------------D-------DKIL-KLWHMKLKLVIVTLGEKGCRYYTKDFK------ 250 (330)
T ss_pred hhhcccccHHHHHHhccCc---------------c-------chHH-HHhccCCCEEEEEeCCCceEEEecCCC------
Confidence 6666666666666554420 0 1112 567777799999999999999999862
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcC--CC---ch
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSG--LD---VM 303 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g--~~---~~ 303 (327)
..++|++++++||||||||+|+|||+.+|.+| .+ ++
T Consensus 251 ---------------------------------------~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~ 291 (330)
T KOG2855|consen 251 ---------------------------------------GSHVPAFKVKAVDTTGAGDSFVGALAVQLVRGSLLPELSLE 291 (330)
T ss_pred ---------------------------------------CCCCCCcccccccCCCchHHHHHHHHHHHhhccccchHHHH
Confidence 24789999999999999999999999999999 77 99
Q ss_pred hhcccchHHHHHHHHH
Q 036840 304 QSVAVDDAKTVYAAAN 319 (327)
Q Consensus 304 ~al~~a~aa~~~~~~~ 319 (327)
+++++|++++++..+.
T Consensus 292 ~~l~~A~a~~ai~v~~ 307 (330)
T KOG2855|consen 292 EALRFANACGAITVQR 307 (330)
T ss_pred HHHHHHHHhhhHHhhc
Confidence 9999999999998554
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-31 Score=244.68 Aligned_cols=247 Identities=23% Similarity=0.307 Sum_probs=206.6
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||.+.|+|..|+.||.++...|.+|.+ .|+.+.+.|+..|+...++.+. ..|..++.+.+......+.+..+
T Consensus 32 ~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~--g~TRinvki~~~~~~~~Tein~~- 107 (310)
T COG1105 32 TKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK--GDTRINVKILDEEDGEETEINFP- 107 (310)
T ss_pred eecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc--CCCeeeEEEEecCCCcEEEecCC-
Confidence 5689999999999999999999999999998 6999999999999999988774 47999999988744334444333
Q ss_pred hhcccCCHHHHHHHHh----hhcCCcEEEEecC----CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc-cceE
Q 036840 82 SIEKFLTPDWIRQFIH----HISSASVLMVDAN----LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK-YITV 152 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~----~l~~~~~v~~~g~----~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~-~~dv 152 (327)
...+++++++.+.+ .+.+.|+|+++|+ ++.+...++++.+++.++++++|.+. +.+.+.|+ ..++
T Consensus 108 --Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg----~~L~~~L~~~P~l 181 (310)
T COG1105 108 --GPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG----EALLAALEAKPWL 181 (310)
T ss_pred --CCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh----HHHHHHHccCCcE
Confidence 24578888777543 4667999999994 56799999999999999999999986 34445444 3889
Q ss_pred EeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCC
Q 036840 153 VSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKT 232 (327)
Q Consensus 153 v~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~ 232 (327)
++||.+|++.+++.... +..+. .++++.++..|++.|||++|.+|+++.+++.
T Consensus 182 IKPN~~EL~~~~g~~~~------------~~~d~----i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~----------- 234 (310)
T COG1105 182 IKPNREELEALFGRELT------------TLEDV----IKAARELLAEGIENVIVSLGADGALLVTAEG----------- 234 (310)
T ss_pred EecCHHHHHHHhCCCCC------------ChHHH----HHHHHHHHHCCCCEEEEEecCcccEEEccCC-----------
Confidence 99999999999886432 22333 4556668889999999999999999998876
Q ss_pred CCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 233 KPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+++.++++++++|+||||+++|||++++++++++++++++|.++
T Consensus 235 -----------------------------------~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~ 279 (310)
T COG1105 235 -----------------------------------VYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVAC 279 (310)
T ss_pred -----------------------------------eEEEeCCCcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 036840 313 TVYAAANV 320 (327)
Q Consensus 313 ~~~~~~~~ 320 (327)
++++..+.
T Consensus 280 g~a~~~~~ 287 (310)
T COG1105 280 GAAAASQK 287 (310)
T ss_pred HHHHhhcC
Confidence 99988743
No 42
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1.5e-31 Score=264.33 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=192.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+|| ++|+|.+|++||.++.++|.+|+|.+|+.+.+.|++.||+++++.+ ++.+|+.++++++.++.... + +..
T Consensus 47 ~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~-~-~~~ 122 (473)
T PRK11316 47 EERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQLIR-L-DFE 122 (473)
T ss_pred EecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceEEe-c-ccc
Confidence 356899 7999999999999999999999999999999999999999998766 56789999888875543222 2 111
Q ss_pred hhcccCCHHHH-HHHHhhhcCCcEEEEecCC--CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHH
Q 036840 82 SIEKFLTPDWI-RQFIHHISSASVLMVDANL--SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNED 158 (327)
Q Consensus 82 ~~~~~l~~~~i-~~~~~~l~~~~~v~~~g~~--~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~ 158 (327)
.....+.++.+ +.+.+.+++++++++++.. ..+....+++.+++.++++++|++... ...++.+|++++|++
T Consensus 123 ~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~~-----~~~~~~~dil~pN~~ 197 (473)
T PRK11316 123 EGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGTD-----FERYRGATLLTPNLS 197 (473)
T ss_pred cCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCCC-----ccccCCCeEECcCHH
Confidence 11112344443 3345678999999997532 124577888899999999999997531 244678999999999
Q ss_pred HHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHH-HcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCC
Q 036840 159 ELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLL-EKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGF 237 (327)
Q Consensus 159 E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
|++.+++.. .+.+++ .+.+++++ +.|++.|+||+|++|++++++++.
T Consensus 198 Ea~~l~g~~-------------~~~~~~----~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~--------------- 245 (473)
T PRK11316 198 EFEAVVGKC-------------KDEAEL----VEKGMKLIADYDLSALLVTRSEQGMTLLQPGKA--------------- 245 (473)
T ss_pred HHHHHhCCC-------------CCHHHH----HHHHHHHHHhcCCCEEEEEecCCCcEEEecCCc---------------
Confidence 999987631 112222 33444444 579999999999999988876541
Q ss_pred cccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHH
Q 036840 238 SRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAA 317 (327)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~ 317 (327)
.+++|+++++++||+||||+|.|||+++|++|+++++|+++|+++|++++
T Consensus 246 ------------------------------~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v 295 (473)
T PRK11316 246 ------------------------------PLHLPTQAREVYDVTGAGDTVISVLAAALAAGNSLEEACALANAAAGVVV 295 (473)
T ss_pred ------------------------------eEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 47788888899999999999999999999999999999999999999987
Q ss_pred HH
Q 036840 318 AN 319 (327)
Q Consensus 318 ~~ 319 (327)
+.
T Consensus 296 ~~ 297 (473)
T PRK11316 296 GK 297 (473)
T ss_pred cc
Confidence 65
No 43
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9.4e-32 Score=247.64 Aligned_cols=240 Identities=19% Similarity=0.258 Sum_probs=183.0
Q ss_pred eecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEE--ecCCCCEEEEEecc
Q 036840 3 YVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNI--LDVNGELAAAVASV 80 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~--~d~~g~~~~~~~~~ 80 (327)
..+||++.|+|.+|++|| ++.++|.+|+| +|+.+++.|++.||+++++.+.++.+|...... .+.++.+.... ..
T Consensus 22 ~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~ 98 (277)
T cd01946 22 KALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT-DL 98 (277)
T ss_pred eccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh-hh
Confidence 568999999999999998 69999999999 899999999999999999988766555221100 01111111110 00
Q ss_pred hhhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhh---hhhhhcccccceEEeCCH
Q 036840 81 ESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTK---SRRITSVVKYITVVSPNE 157 (327)
Q Consensus 81 ~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~dvv~~n~ 157 (327)
+ ....+.+. +.+.+++++++|+++ ++++....+++.+++. .++++|+...|. .+.+.++++++|++++|+
T Consensus 99 ~-~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~-~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~ 171 (277)
T cd01946 99 N-VFADFDPQ----LPEHYKDSEFVFLGN-IAPELQREVLEQVKDP-KLVVMDTMNFWISIKPEKLKKVLAKVDVVIIND 171 (277)
T ss_pred h-HHhhcCCC----ChHHhhcCCEEEECC-CCHHHHHHHHHHHHhC-CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCH
Confidence 0 00112221 224578899999965 5677788888888877 889999855442 345778899999999999
Q ss_pred HHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCC
Q 036840 158 DELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGF 237 (327)
Q Consensus 158 ~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
+|+..+++. . ..+++++.+.+.|++.||+|+|.+|++++.+++
T Consensus 172 ~E~~~l~g~-----------------~----~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~---------------- 214 (277)
T cd01946 172 GEARQLTGA-----------------A----NLVKAARLILAMGPKALIIKRGEYGALLFTDDG---------------- 214 (277)
T ss_pred HHHHHHhCC-----------------c----hHHHHHHHHHHcCCCEEEEecCCCcEEEEECCc----------------
Confidence 999988653 0 124566778888999999999999999987654
Q ss_pred cccccccccccccCCCccCCCCCCCCCcceeEeecCCCCc-ccccCCCchhHHHHHHHHHHcCC-----CchhhcccchH
Q 036840 238 SRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPAS-VVRLTGAGDCLVGGTLASISSGL-----DVMQSVAVDDA 311 (327)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvdttGAGDaF~ag~l~~l~~g~-----~~~~al~~a~a 311 (327)
.+++|+++++ ++|||||||+|+|||+++|++|+ ++++|+++|++
T Consensus 215 ------------------------------~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~ 264 (277)
T cd01946 215 ------------------------------YFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSA 264 (277)
T ss_pred ------------------------------eEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHH
Confidence 6788888875 89999999999999999999874 58999999999
Q ss_pred HHHHHHHH
Q 036840 312 KTVYAAAN 319 (327)
Q Consensus 312 a~~~~~~~ 319 (327)
+++++++.
T Consensus 265 ~aa~~~~~ 272 (277)
T cd01946 265 MASFCVED 272 (277)
T ss_pred HHhhhhhh
Confidence 99998875
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=9e-31 Score=237.93 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=177.6
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
...+||++.|+|.+|++||.++.++|.+|+|..|+ ++.|++.||++..+ . ...|+.+++.++.++++++.+.. +
T Consensus 20 ~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~~-~ 93 (254)
T cd01937 20 VVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVISL--L-STETTTFELNYTNEGRTRTLLAK-C 93 (254)
T ss_pred EEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEEEe--c-CCCeEEEEEEecCCCCeeeeecc-c
Confidence 46789999999999999999999999999999998 68899999996532 3 33567777777777777766543 2
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhh-----hhhhcccccceEEeCC
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKS-----RRITSVVKYITVVSPN 156 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~-----~~~~~~l~~~dvv~~n 156 (327)
. ....... ...+.+++++|+++ ++.+....+.+.+ .+|++|++..+.. ..+.++++++|++++|
T Consensus 94 ~-~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n 162 (254)
T cd01937 94 A-AIPDTES-----PLSTITAEIVILGP-VPEEISPSLFRKF----AFISLDAQGFLRRANQEKLIKCVILKLHDVLKLS 162 (254)
T ss_pred c-CCccccc-----ccccCcccEEEECC-CcchhcHHHHhhh----hheeEccccceeeccccchHHHhhcccCcEEEEc
Confidence 2 1112111 13467899999975 4555444444433 7899999864211 1245789999999999
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCC
Q 036840 157 EDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 157 ~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
++|+..+ . ..+++++.+.+.|++.||||+|++|++++.+++
T Consensus 163 ~~E~~~~-~-----------------------~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~--------------- 203 (254)
T cd01937 163 RVEAEVI-S-----------------------TPTELARLIKETGVKEIIVTDGEEGGYIFDGNG--------------- 203 (254)
T ss_pred HHHHhhc-C-----------------------CHHHHHHHHHHcCCCEEEEeeCCcceEEEECCc---------------
Confidence 9998762 0 124556677778999999999999999987654
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYA 316 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~ 316 (327)
.+++|+++++++|||||||+|+|||++++++|+++++|+++|+++++++
T Consensus 204 -------------------------------~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~ 252 (254)
T cd01937 204 -------------------------------KYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKF 252 (254)
T ss_pred -------------------------------cEEccccCceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6788888888999999999999999999999999999999999999987
Q ss_pred H
Q 036840 317 A 317 (327)
Q Consensus 317 ~ 317 (327)
+
T Consensus 253 i 253 (254)
T cd01937 253 I 253 (254)
T ss_pred h
Confidence 4
No 45
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=4.6e-30 Score=242.23 Aligned_cols=226 Identities=21% Similarity=0.256 Sum_probs=182.6
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecC-----CCCEEEE
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDV-----NGELAAA 76 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~-----~g~~~~~ 76 (327)
...+||+++|+|.+|++||.++.++|++|+|.. .+|+...+.. ++.+|+.++.++++ ++++++.
T Consensus 33 ~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~ 101 (335)
T PLN02630 33 AESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVL 101 (335)
T ss_pred EEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------ccccccceec-CCCCceEEEEEEcCCcccCCCCeEEE
Confidence 367899999999999999999999999999952 3677654444 66789999888876 4567655
Q ss_pred EecchhhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHh-----CCCCEEEecCch-h---h--hhhhhc
Q 036840 77 VASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAE-----CNIPVWFEPVSV-T---K--SRRITS 145 (327)
Q Consensus 77 ~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~-----~~~~v~~d~~~~-~---~--~~~~~~ 145 (327)
.. .+++..+++++++.. .++.++++++.++++++....+++.++. +++.++||+.+. . . ...+.+
T Consensus 102 ~~--~ga~~~l~~~di~~~--~~~~~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~ 177 (335)
T PLN02630 102 KR--VCACDPIEPSDIPDM--RYEFGMAVGVAGEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYD 177 (335)
T ss_pred Ee--ccccCCCChHHCCHH--HhcccceeeecCCCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHH
Confidence 43 455677899888652 4678899999888888889999998888 789999999762 1 1 123567
Q ss_pred ccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhh
Q 036840 146 VVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSM 225 (327)
Q Consensus 146 ~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~ 225 (327)
+++++|++++|++|+..+ . . ++ +.+ ...||||+|++|++++.+++
T Consensus 178 ~L~~iDil~~ne~Ea~~l-~-----------------~-------~~----~~~--~~~vvvt~G~~G~~~~~~~~---- 222 (335)
T PLN02630 178 MLPRIGFLKASSEEALFI-D-----------------V-------EE----VRQ--KCCVIVTNGKKGCRIYWKDG---- 222 (335)
T ss_pred HHHhCCEEEecHHHHhhc-C-----------------H-------HH----Hcc--CCEEEEEECCCceEEEECCe----
Confidence 899999999999999764 1 1 11 112 23899999999999987654
Q ss_pred hhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhh
Q 036840 226 RIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQS 305 (327)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~a 305 (327)
.+++|+++++++|||||||+|+|||++++++|+++++|
T Consensus 223 ------------------------------------------~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~~~~a 260 (335)
T PLN02630 223 ------------------------------------------EMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLAVPDA 260 (335)
T ss_pred ------------------------------------------eEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHH
Confidence 67899999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHH
Q 036840 306 VAVDDAKTVYAAAN 319 (327)
Q Consensus 306 l~~a~aa~~~~~~~ 319 (327)
+++|++++++++..
T Consensus 261 ~~~A~a~aa~~v~~ 274 (335)
T PLN02630 261 ALLGNYFGSLAVEQ 274 (335)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999998764
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.2e-29 Score=225.93 Aligned_cols=256 Identities=23% Similarity=0.291 Sum_probs=198.0
Q ss_pred CceecCCchHHHHHHHHHcCC---CceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEE
Q 036840 1 VNYVLGGVARNVAECMSKLGS---KPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAV 77 (327)
Q Consensus 1 ~~~~~GG~~~N~a~~la~LG~---~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~ 77 (327)
+++.+||++.|+++.+++++. .+.|+|.+|.|.+|+.+.+.+++.||+.++- +.++.+|+.|.++++.++ |+..-
T Consensus 58 ~~~~AGGs~qNt~R~aq~~~~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL~a 135 (343)
T KOG2854|consen 58 VKYSAGGSAQNTLRIAQWLLQQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSLCA 135 (343)
T ss_pred EEecCCchhHHHHHHHHHHccCCCceEEEeeccCchHHHHHHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cchhh
Confidence 357899999999999999977 7999999999999999999999999999964 556789999999998777 65443
Q ss_pred ecchhhcccCCHHHHHH--HHhhhcCCcEEEEec---CCCHHHHHHHHHHHHhCCCCEEEecCchh----hhhhhhcccc
Q 036840 78 ASVESIEKFLTPDWIRQ--FIHHISSASVLMVDA---NLSPPALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVK 148 (327)
Q Consensus 78 ~~~~~~~~~l~~~~i~~--~~~~l~~~~~v~~~g---~~~~~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~ 148 (327)
+. +. ...++.+.+++ .+..+.++.++|+.| .++++.++.+.+.+.+.+.+..++.+.+. ..+.+.++++
T Consensus 136 nL-gA-An~f~~dhl~~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~ 213 (343)
T KOG2854|consen 136 NL-GA-ANCFKVDHLDKEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLP 213 (343)
T ss_pred cc-ch-hhccCHHHhcchhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcC
Confidence 22 33 34577777754 456889999999998 45789999999999998888777776532 3466788999
Q ss_pred cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHH-HHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhh
Q 036840 149 YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLK-PAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRI 227 (327)
Q Consensus 149 ~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~ 227 (327)
|+|+++.|++|++++.....++. .+..++ .+. .+.........+.+++|.|.+++++...+.
T Consensus 214 y~DiifgNe~EA~af~~~~~~~t---------~dv~ei--a~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~------ 276 (343)
T KOG2854|consen 214 YADIIFGNEDEAAAFARAHGWET---------KDVKEI--ALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGK------ 276 (343)
T ss_pred cceEEEcCHHHHHHHHHhhCCcc---------cchHHH--hhHhhccccccccccceEEEccCCCceEEecCCc------
Confidence 99999999999999988754421 001010 001 111111113467999999999999987743
Q ss_pred cccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCC-cccccCCCchhHHHHHHHHHHcCCCchhhc
Q 036840 228 GLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPA-SVVRLTGAGDCLVGGTLASISSGLDVMQSV 306 (327)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvdttGAGDaF~ag~l~~l~~g~~~~~al 306 (327)
...+.+.+.+. +++||+||||+|++|||++|.+|+++++|+
T Consensus 277 --------------------------------------v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~ci 318 (343)
T KOG2854|consen 277 --------------------------------------VTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECI 318 (343)
T ss_pred --------------------------------------eEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHH
Confidence 12555555555 699999999999999999999999999999
Q ss_pred ccchHHHHH
Q 036840 307 AVDDAKTVY 315 (327)
Q Consensus 307 ~~a~aa~~~ 315 (327)
+.|.-++..
T Consensus 319 r~g~~aa~~ 327 (343)
T KOG2854|consen 319 RAGSYAASH 327 (343)
T ss_pred HHHHHHhhh
Confidence 998877654
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.5e-25 Score=205.16 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=192.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+.++|| ++|+|.+++.||.++.++|.+|+|..|+.+.+.|...+++.. +..+++++|.....++..+.+.. -+....
T Consensus 47 ~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~-l~~~~~r~T~~K~Rv~s~nQQll-RvD~Ee 123 (467)
T COG2870 47 EERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKALIELLKANGIDSD-LLRDKNRPTIVKLRVLSRNQQLL-RLDFEE 123 (467)
T ss_pred cccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHHhcCcccc-eEeecCCCceeeeeeecccceEE-Eecccc
Confidence 357888 999999999999999999999999999999999999999955 55678899999999987554332 121111
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecC----CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDAN----LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNE 157 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~----~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~ 157 (327)
..........++.+...+.+.+.++++.. +.. +..+++.|++.++||.+||-+.. .+.++-+..+.||.
T Consensus 124 ~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~--~q~~I~~ar~~~~pVLvDPKg~D-----f~~Y~GAtLiTPN~ 196 (467)
T COG2870 124 KFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTN--VQKMIDLAREAGIPVLVDPKGKD-----FEKYRGATLITPNL 196 (467)
T ss_pred cCcchhHHHHHHHHHHHhhcCCEEEEeccccccchh--HHHHHHHHHHcCCcEEECCCCcc-----hhhhCCCeecCCCH
Confidence 11112233445566778899999999853 333 78899999999999999997632 23456689999999
Q ss_pred HHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHH-cCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCC
Q 036840 158 DELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLE-KGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 158 ~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
.|++...+.... .++ +.+....|.+ .+...++||++++|+.+++.++
T Consensus 197 ~E~~~~vg~~~~-------------e~e----l~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~--------------- 244 (467)
T COG2870 197 KEFEEAVGKCKS-------------EEE----LEERGQKLKEELDLSALLVTRSEKGMTLFQEGK--------------- 244 (467)
T ss_pred HHHHHHHccccc-------------HHH----HHHHHHHHHHhhCcceEEEEeccCCceeecCCc---------------
Confidence 999999886432 122 3444555655 6899999999999999998875
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVY 315 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~ 315 (327)
..|+|+...++.|-|||||+-+|.|..+|+.|.++++|..+||+|+.+
T Consensus 245 -------------------------------~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~Aagi 292 (467)
T COG2870 245 -------------------------------PLHFPARAKEVYDVTGAGDTVIAVLAAALAAGASLEEACELANAAAGI 292 (467)
T ss_pred -------------------------------ccccchhheeeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhcce
Confidence 588898888999999999999999999999999999999999999864
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.5e-23 Score=182.27 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=187.7
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEec-CCCCEEEEEecchh
Q 036840 4 VLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILD-VNGELAAAVASVES 82 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d-~~g~~~~~~~~~~~ 82 (327)
.-||.+.|+...|+.||.++.|+|.+.....-+.+++.|++.|||+++...... ..+.+.++++ ..|+|++.+.+.
T Consensus 39 qRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~-~pp~ssiI~~r~s~trTil~~dk-- 115 (308)
T KOG2947|consen 39 QRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDH-SPPFSSIIINRNSGTRTILYCDK-- 115 (308)
T ss_pred hcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCCcccCccccC-CCCcceEEEecCCCceEEEEecC--
Confidence 359999999999999999999999999998899999999999999999877654 4555555554 468888877643
Q ss_pred hcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHh-------CCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 83 IEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAE-------CNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 83 ~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~-------~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
.....+.+++.+ -.+.++.|+||++..+.+.+.++..+... .+|.|++|... .++....+..++|+|+.
T Consensus 116 s~p~vT~~dF~k--vdl~qy~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en--~req~~~l~am~DyVf~ 191 (308)
T KOG2947|consen 116 SLPDVTATDFEK--VDLTQYGWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVEN--PREQLFQLFAMCDYVFV 191 (308)
T ss_pred CCccccHHHhhh--cccceeeeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEecC--cHHHHHHHhhcccEEEE
Confidence 245688888875 35789999999998888887766554321 56778888865 34677889999999999
Q ss_pred CHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCC-EEEEEeCCCceEEEEeccchhhhhcccCCCC
Q 036840 156 NEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIR-LVVLTLGSDGVLLCSKELLSSMRIGLRKTKP 234 (327)
Q Consensus 156 n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~ 234 (327)
+.+=+..+ +. .++.+.. +....++.+-+++ .+|+-.+++|+=....+++
T Consensus 192 sK~~a~~~-gf--------------ks~rea~---~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~------------ 241 (308)
T KOG2947|consen 192 SKDVAKHL-GF--------------KSPREAC---EGLYGRVPKGKPKPVLICPWASEGAGALGADGK------------ 241 (308)
T ss_pred EHHHHhhh-cc--------------CCHHHHH---HHHHhhcccCCCCcEEEeccccccccccCCCCC------------
Confidence 88776654 22 2232222 2222222222233 5777788888766555542
Q ss_pred CCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCC-CcccccCCCchhHHHHHHHH-HHcCCCchhhcccchHH
Q 036840 235 YGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALP-ASVVRLTGAGDCLVGGTLAS-ISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvdttGAGDaF~ag~l~~-l~~g~~~~~al~~a~aa 312 (327)
++++++.+ -++||+.|+||+|.|||+|+ |.+++.+.||+.||+.+
T Consensus 242 ---------------------------------yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rv 288 (308)
T KOG2947|consen 242 ---------------------------------YFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRV 288 (308)
T ss_pred ---------------------------------EEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 88888884 47999999999999999999 56799999999999999
Q ss_pred HHHHHHHH
Q 036840 313 TVYAAANV 320 (327)
Q Consensus 313 ~~~~~~~~ 320 (327)
+.+|++-.
T Consensus 289 as~Kl~g~ 296 (308)
T KOG2947|consen 289 ASKKLGGQ 296 (308)
T ss_pred hhcccccc
Confidence 99988654
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.91 E-value=3.3e-23 Score=180.28 Aligned_cols=160 Identities=26% Similarity=0.435 Sum_probs=131.7
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
+..+||.+.|+|.+|++||.++.++|
T Consensus 32 ~~~~GG~~~n~a~~l~~LG~~~~~~~------------------------------------------------------ 57 (196)
T cd00287 32 EERAGGGAANVAVALARLGVSVTLVG------------------------------------------------------ 57 (196)
T ss_pred eecCCCcHHHHHHHHHHCCCcEEEEE------------------------------------------------------
Confidence 46789999999999999999999999
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCH-HHHHHHHHHHHhCCCCEEEecCchhhh---hhhhcccccceEEeCCH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSP-PALAASCKIAAECNIPVWFEPVSVTKS---RRITSVVKYITVVSPNE 157 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~-~~~~~l~~~a~~~~~~v~~d~~~~~~~---~~~~~~l~~~dvv~~n~ 157 (327)
++++|+++..+. +....+++.+++.++++++|++..... ..+.++++++|++++|+
T Consensus 58 --------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~ 117 (196)
T cd00287 58 --------------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPGVDILTPNE 117 (196)
T ss_pred --------------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCccccccccchHHHHHhhCCEECCCH
Confidence 789999887654 678888899999999999999875322 22566889999999999
Q ss_pred HHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEE-eccchhhhhcccCCCCCC
Q 036840 158 DELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCS-KELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 158 ~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~~ 236 (327)
+|+..+++.... +.+ .+.++++.+.+.+.+.+|+|+|++|++++. ++.
T Consensus 118 ~E~~~l~~~~~~------------~~~----~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~--------------- 166 (196)
T cd00287 118 EEAEALTGRRDL------------EVK----EAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGT--------------- 166 (196)
T ss_pred HHHHHHhCCCCC------------ChH----HHHHHHHHHHhcCCCEEEEEECCCccEEEecCCc---------------
Confidence 999999774211 111 234567778888999999999999999987 432
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASIS 297 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~ 297 (327)
.+++|+++.+++||+||||+|+|||+++++
T Consensus 167 -------------------------------~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 167 -------------------------------EVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred -------------------------------eEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 678888888899999999999999999974
No 50
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.75 E-value=6.3e-16 Score=142.02 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=148.3
Q ss_pred eEEEeecCCcch-HHHHHHH---HhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HHhh
Q 036840 24 YMISALGLDMAG-NILLEHW---KSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FIHH 98 (327)
Q Consensus 24 ~~i~~vG~D~~g-~~i~~~l---~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~~~ 98 (327)
..++.-|.|+.| .-+...+ +..|+..- ...++....++.+.....+. ..+++.+.. +..+
T Consensus 3 ~vl~iag~D~sggaGi~aD~~t~~~lg~~~~--------~v~Ta~t~q~~~~~~~~~v~-------~~~~~~i~~q~~~l 67 (268)
T PRK12412 3 KALTIAGSDTSGGAGIQADLKTFQELGVYGM--------TSLTTIVTMDPHNGWAHNVF-------PIPASTLKPQLETT 67 (268)
T ss_pred eEEEEEeeCCCchHHHHHHHHHHHHcCCeec--------eeeeEEEeEcCCCCcEEEEE-------eCCHHHHHHHHHHH
Confidence 356777788444 4465544 45665432 34445555555443322221 134444443 2344
Q ss_pred hcC--CcEEEEecCCCHHHHHHHHHHHHhCCCC-EEEecCchh----------hhhh-hhcccccceEEeCCHHHHHHHH
Q 036840 99 ISS--ASVLMVDANLSPPALAASCKIAAECNIP-VWFEPVSVT----------KSRR-ITSVVKYITVVSPNEDELVAMA 164 (327)
Q Consensus 99 l~~--~~~v~~~g~~~~~~~~~l~~~a~~~~~~-v~~d~~~~~----------~~~~-~~~~l~~~dvv~~n~~E~~~l~ 164 (327)
+.+ .+++.+..-.+.+.+..+++.+++.+.+ +++||.... ..+. ..++++++|++++|+.|++.|+
T Consensus 68 ~~d~~~~~ikiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 147 (268)
T PRK12412 68 IEGVGVDALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLS 147 (268)
T ss_pred HhCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHh
Confidence 554 7888887666788899999999988876 999996421 1122 3457899999999999999997
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCce------EEEEeccchhhhhcccCCCCCCCc
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGV------LLCSKELLSSMRIGLRKTKPYGFS 238 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
+... .+.++ ++++++.+.+.|++.|+||.|+.|+ +++..+.
T Consensus 148 g~~~------------~~~~~----~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~----------------- 194 (268)
T PRK12412 148 GVKI------------NSLED----MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGET----------------- 194 (268)
T ss_pred CcCC------------CCHHH----HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCE-----------------
Confidence 7421 11222 3667788888999999999998763 2332221
Q ss_pred ccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHH--HH
Q 036840 239 RDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTV--YA 316 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~--~~ 316 (327)
.++++.++++.+|++||||+|+|+|+++|++|+++++|+++|.+... ++
T Consensus 195 -----------------------------~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g~~l~eA~~~A~~~~~~~i~ 245 (268)
T PRK12412 195 -----------------------------FDLLESEKIDTTNTHGAGCTYSAAITAELAKGKPVKEAVKTAKEFITAAIR 245 (268)
T ss_pred -----------------------------EEEEEeCccCCCCCCchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 45678878889999999999999999999999999999999766543 44
Q ss_pred HH
Q 036840 317 AA 318 (327)
Q Consensus 317 ~~ 318 (327)
.+
T Consensus 246 ~~ 247 (268)
T PRK12412 246 YS 247 (268)
T ss_pred HH
Confidence 44
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.74 E-value=3.1e-16 Score=142.70 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=140.7
Q ss_pred CceEEEeecCC-cchHHHHHHHHh---cCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHHHHh
Q 036840 22 KPYMISALGLD-MAGNILLEHWKS---AGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIH 97 (327)
Q Consensus 22 ~v~~i~~vG~D-~~g~~i~~~l~~---~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~ 97 (327)
+...++.-|.| .-|.-+...++. +|+ ....+.++...++..|..... ...+.+....+
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~--------~~~~~~t~~t~~~~~G~~v~~----------~~~~~l~~~l~ 64 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGL--------HGFVAVTCLTAMTEKGFEVFP----------VDKEIFQQQLD 64 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCC--------ccCeeeEEEecccCCceEEEE----------CCHHHHHHHHH
Confidence 45678888888 445557766653 333 233455566666766742211 22333322122
Q ss_pred hhcCCcEEEEe-cCC-CHHHHHHHHHHHH-hCCCCEEEecCchhh----------hhhhhcccccceEEeCCHHHHHHHH
Q 036840 98 HISSASVLMVD-ANL-SPPALAASCKIAA-ECNIPVWFEPVSVTK----------SRRITSVVKYITVVSPNEDELVAMA 164 (327)
Q Consensus 98 ~l~~~~~v~~~-g~~-~~~~~~~l~~~a~-~~~~~v~~d~~~~~~----------~~~~~~~l~~~dvv~~n~~E~~~l~ 164 (327)
.+...++..+. |.+ +.+....+++.++ .++++++|||..+.. .+.+.++++++|++++|++|++.|+
T Consensus 65 ~l~~~~~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 65 SLKDVPFSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred HhhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 23444454443 544 3455666666666 478899999875321 1234567899999999999999998
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCce-----EEEEeccchhhhhcccCCCCCCCcc
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGV-----LLCSKELLSSMRIGLRKTKPYGFSR 239 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
+... .+.++ ++++++.+.+.|++.||||.|+.|. .++..++
T Consensus 145 g~~~------------~~~~~----~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~------------------ 190 (253)
T PRK12413 145 GKEI------------KTLED----MKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGK------------------ 190 (253)
T ss_pred CcCC------------CCHHH----HHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCC------------------
Confidence 7421 12222 3567788888899999999998642 2232222
Q ss_pred cccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--HHHHHH
Q 036840 240 DLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA--KTVYAA 317 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a--a~~~~~ 317 (327)
..+.+..++..+|++||||+|+|+|+++|++|+++++|+++|.+ ..+++.
T Consensus 191 ----------------------------~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 191 ----------------------------EFVILESPVLEKNNIGAGCTFASSIASQLVKGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred ----------------------------EEEEEeecccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33445556677999999999999999999999999999999644 445555
Q ss_pred HH
Q 036840 318 AN 319 (327)
Q Consensus 318 ~~ 319 (327)
+.
T Consensus 243 ~~ 244 (253)
T PRK12413 243 SD 244 (253)
T ss_pred HH
Confidence 43
No 52
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.72 E-value=2.2e-16 Score=146.37 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=120.4
Q ss_pred cCCHHHHHHHHhhh------cCCcEEEEecCCC-H---HHHHHHHHHHHhCC--CCEEEecCchh----------hhhhh
Q 036840 86 FLTPDWIRQFIHHI------SSASVLMVDANLS-P---PALAASCKIAAECN--IPVWFEPVSVT----------KSRRI 143 (327)
Q Consensus 86 ~l~~~~i~~~~~~l------~~~~~v~~~g~~~-~---~~~~~l~~~a~~~~--~~v~~d~~~~~----------~~~~~ 143 (327)
.+++++++.+.+.+ ..+|++ ..|.++ . +.+..+++.+++.+ +++++||.... ..+.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~ 131 (286)
T TIGR00687 53 VLPPDELTELVDGLAAINKLNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVY 131 (286)
T ss_pred ECCHHHHHHHHHHHHhcCccccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHH
Confidence 35666666554443 478886 555543 3 35666666666554 67899994211 11223
Q ss_pred -hcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE-eCCCce-------
Q 036840 144 -TSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT-LGSDGV------- 214 (327)
Q Consensus 144 -~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt-~G~~G~------- 214 (327)
..+++++|++++|..|++.+++... .+.++ +.++++.+++.|++.||+| .|.+|+
T Consensus 132 ~~~ll~~adii~pN~~Ea~~L~g~~~------------~~~~~----~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~ 195 (286)
T TIGR00687 132 REKAIPVADIITPNQFELELLTGRKI------------NTVEE----ALAAADALIAMGPDIVLVTHLARAGSQRDRDFE 195 (286)
T ss_pred HHhccccccEecCCHHHHHHHhCCCc------------CCHHH----HHHHHHHHHHhCCCEEEEEeccccCCCCCccee
Confidence 3578999999999999999977421 11222 3566788888899999999 687775
Q ss_pred -EEEEeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCc-ccccCCCchhHHHHH
Q 036840 215 -LLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPAS-VVRLTGAGDCLVGGT 292 (327)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvdttGAGDaF~ag~ 292 (327)
+++.+++ .++.+.++.+ ++|++||||+|+|||
T Consensus 196 ~~~~~~~~----------------------------------------------~~~~~~~~~~~~~d~~GaGD~f~A~~ 229 (286)
T TIGR00687 196 GLVVTQEG----------------------------------------------RWHISRPLAVFMRQPVGTGDLIAALL 229 (286)
T ss_pred EEEEcCCc----------------------------------------------eEEEeccCcCCCCCCCChHHHHHHHH
Confidence 2333322 4555655566 689999999999999
Q ss_pred HHHHHcCCCchhhcccchHH--HHHHHHHH
Q 036840 293 LASISSGLDVMQSVAVDDAK--TVYAAANV 320 (327)
Q Consensus 293 l~~l~~g~~~~~al~~a~aa--~~~~~~~~ 320 (327)
++++++|+++++|+++|+++ .+++.+..
T Consensus 230 l~~l~~g~~~~~al~~A~~~v~~~l~~t~~ 259 (286)
T TIGR00687 230 LATLLHGNSLKEALEKTVSAVYHVLVTTIA 259 (286)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 77766643
No 53
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.70 E-value=1e-15 Score=139.45 Aligned_cols=166 Identities=19% Similarity=0.236 Sum_probs=121.5
Q ss_pred CCHHHHHH-HHhhhc--CCcEEEEecCCCHHHHHHHHHHHHhCCC-CEEEecCchhh----------hhhh-hcccccce
Q 036840 87 LTPDWIRQ-FIHHIS--SASVLMVDANLSPPALAASCKIAAECNI-PVWFEPVSVTK----------SRRI-TSVVKYIT 151 (327)
Q Consensus 87 l~~~~i~~-~~~~l~--~~~~v~~~g~~~~~~~~~l~~~a~~~~~-~v~~d~~~~~~----------~~~~-~~~l~~~d 151 (327)
++++.+.. +..++. ..+.+.+..-.+.+.+..+++.+++.++ ++++||..... .+.+ .++++++|
T Consensus 50 ~~~~~~~~q~~~~~~d~~~~aikiG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~d 129 (254)
T TIGR00097 50 IPPDFVEAQLDAVFSDIPVDAAKTGMLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLAT 129 (254)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhcccccc
Confidence 44444433 233444 3566777544467889999999998888 79999864211 0122 45789999
Q ss_pred EEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC----ce-EEEEeccchhhh
Q 036840 152 VVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD----GV-LLCSKELLSSMR 226 (327)
Q Consensus 152 vv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~----G~-~~~~~~~~~~~~ 226 (327)
++++|..|++.|++... .+.++ +.++++.+.+.|++.|+||.|+. |. +++.+++
T Consensus 130 vitpN~~Ea~~L~g~~~------------~~~~~----~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~----- 188 (254)
T TIGR00097 130 LITPNLPEAEALLGTKI------------RTEQD----MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGE----- 188 (254)
T ss_pred EecCCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCe-----
Confidence 99999999999987421 11222 35677888888999999999973 44 4454432
Q ss_pred hcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhc
Q 036840 227 IGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSV 306 (327)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al 306 (327)
.++++.++++.+|++|+||+|.|+|+++|++|+++++|+
T Consensus 189 -----------------------------------------~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~~l~eA~ 227 (254)
T TIGR00097 189 -----------------------------------------IHILKAPRIETKNTHGTGCTLSAAIAANLAKGLSLKEAV 227 (254)
T ss_pred -----------------------------------------EEEEEecccCCCCCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 567788888899999999999999999999999999999
Q ss_pred ccchHHHH
Q 036840 307 AVDDAKTV 314 (327)
Q Consensus 307 ~~a~aa~~ 314 (327)
++|.+...
T Consensus 228 ~~A~~~~~ 235 (254)
T TIGR00097 228 KEAKEFVT 235 (254)
T ss_pred HHHHHHHH
Confidence 99766544
No 54
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.70 E-value=3.3e-16 Score=142.52 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=114.9
Q ss_pred CCHHHHHHHHhhh------cCCcEEEEecCC-C---HHHHHHHHHHHHhC--CCCEEEecCch-----h-----hhhhhh
Q 036840 87 LTPDWIRQFIHHI------SSASVLMVDANL-S---PPALAASCKIAAEC--NIPVWFEPVSV-----T-----KSRRIT 144 (327)
Q Consensus 87 l~~~~i~~~~~~l------~~~~~v~~~g~~-~---~~~~~~l~~~a~~~--~~~v~~d~~~~-----~-----~~~~~~ 144 (327)
+++++++.+.+.+ ...+++. .|.+ + .+.+..+++.+++. +++|++||... + ..+.+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~ 130 (254)
T cd01173 52 LSAEELEDLLEGLEALGLLLEYDAVL-TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYR 130 (254)
T ss_pred cCHHHHHHHHHHHHHcCCcccCCEEE-EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHH
Confidence 4555555433222 4567774 4543 2 24566666777765 88999999521 1 123455
Q ss_pred cccc-cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC------ceEEE
Q 036840 145 SVVK-YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD------GVLLC 217 (327)
Q Consensus 145 ~~l~-~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~------G~~~~ 217 (327)
+++. ++|++++|.+|++.+++... .+.++ ++++++.|.+.|++.|++|.|+. |++++
T Consensus 131 ~~l~~~~dvi~pN~~Ea~~l~g~~~------------~~~~~----~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~ 194 (254)
T cd01173 131 DLLVPLADIITPNQFELELLTGKKI------------NDLED----AKAAARALHAKGPKTVVVTSVELADDDRIEMLGS 194 (254)
T ss_pred HHHHhcCCEECCcHHHHHHHcCCCc------------CCHHH----HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEE
Confidence 6666 99999999999999877421 11222 36677888888999999999985 77776
Q ss_pred EeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHH
Q 036840 218 SKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASIS 297 (327)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~ 297 (327)
.+++. +..+.|..+. ++|++||||+|+|+|+++|+
T Consensus 195 ~~~~~--------------------------------------------~~~~~~~~~~-~~~~~GaGD~f~a~~~~~l~ 229 (254)
T cd01173 195 TATEA--------------------------------------------WLVQRPKIPF-PAYFNGTGDLFAALLLARLL 229 (254)
T ss_pred ecCcc--------------------------------------------EEEEeeccCC-CCCcCChHHHHHHHHHHHHH
Confidence 65431 1233444444 79999999999999999999
Q ss_pred cCCCchhhcccchHHH
Q 036840 298 SGLDVMQSVAVDDAKT 313 (327)
Q Consensus 298 ~g~~~~~al~~a~aa~ 313 (327)
+|+++++|+++|++..
T Consensus 230 ~g~~~~~a~~~A~~~~ 245 (254)
T cd01173 230 KGKSLAEALEKALNFV 245 (254)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999977653
No 55
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.70 E-value=6.3e-16 Score=139.50 Aligned_cols=150 Identities=20% Similarity=0.244 Sum_probs=114.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhC-CCCEEEecCchhh----------hhh-hhcccccceEEeCCHHHHHHHHHhhc
Q 036840 101 SASVLMVDANLSPPALAASCKIAAEC-NIPVWFEPVSVTK----------SRR-ITSVVKYITVVSPNEDELVAMANALS 168 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~-~~~v~~d~~~~~~----------~~~-~~~~l~~~dvv~~n~~E~~~l~~~~~ 168 (327)
+.+++.+..-.+.+....+.+.+++. +.++++||..... .+. ...+++++|++++|..|++.|++...
T Consensus 68 ~~~~i~~G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 147 (242)
T cd01169 68 PVDAIKIGMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEI 147 (242)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCC
Confidence 57778774333578888888888876 8899999975321 112 24567999999999999999987421
Q ss_pred CCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc----e-EEEEeccchhhhhcccCCCCCCCcccccc
Q 036840 169 GENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG----V-LLCSKELLSSMRIGLRKTKPYGFSRDLYK 243 (327)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (327)
. +.++ +.++++.+.+.|++.||+|.|+.| . +++.+++
T Consensus 148 ~------------~~~~----~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~---------------------- 189 (242)
T cd01169 148 A------------TEED----MMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGG---------------------- 189 (242)
T ss_pred C------------CHHH----HHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCc----------------------
Confidence 1 1112 245677788889999999999875 3 4554432
Q ss_pred cccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 244 TVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.++++.++++++|++|+||+|+|+|+++|++|+++++|+++|+..
T Consensus 190 ------------------------~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~~~~~A~~~A~~~ 234 (242)
T cd01169 190 ------------------------FFEFESPRIDTKNTHGTGCTLSSAIAANLAKGLSLEEAVREAKEY 234 (242)
T ss_pred ------------------------EEEEecceeCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 567888887889999999999999999999999999999987654
No 56
>PRK05756 pyridoxamine kinase; Validated
Probab=99.69 E-value=7.5e-16 Score=142.80 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhh------cCCcEEEEecCCC-H---HHHHHHHHHHHhCC--CCEEEecCchhhh----------hhh-
Q 036840 87 LTPDWIRQFIHHI------SSASVLMVDANLS-P---PALAASCKIAAECN--IPVWFEPVSVTKS----------RRI- 143 (327)
Q Consensus 87 l~~~~i~~~~~~l------~~~~~v~~~g~~~-~---~~~~~l~~~a~~~~--~~v~~d~~~~~~~----------~~~- 143 (327)
+++++++.+.+.+ ..++++ +.|.++ . +.+..+++.+++.+ +.+++||.-.... +.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~ 132 (286)
T PRK05756 54 MPPSHLTEIVQGIADIGWLGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLR 132 (286)
T ss_pred CCHHHHHHHHHHHHhcCccccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHH
Confidence 4555665543333 467766 556442 2 44556666666554 5688998643210 122
Q ss_pred hcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC--------ceE
Q 036840 144 TSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD--------GVL 215 (327)
Q Consensus 144 ~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~--------G~~ 215 (327)
..+++++|++++|..|++.|++... .+.++ +.++++.+++.|++.||||.|+. |++
T Consensus 133 ~~ll~~adiitpN~~Ea~~L~g~~~------------~~~~~----~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~ 196 (286)
T PRK05756 133 DRALPAADIITPNLFELEWLSGRPV------------ETLED----AVAAARALIARGPKIVLVTSLARAGYPADRFEML 196 (286)
T ss_pred HhhcccccEecCCHHHHHHHhCCCc------------CCHHH----HHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEE
Confidence 3488999999999999999977421 12222 35667788888999999999876 466
Q ss_pred EEEeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcc-cccCCCchhHHHHHHH
Q 036840 216 LCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASV-VRLTGAGDCLVGGTLA 294 (327)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vdttGAGDaF~ag~l~ 294 (327)
++.+++ .++++.++++. +|++||||+|+|+|++
T Consensus 197 ~~~~~~----------------------------------------------~~~~~~~~~~~~v~~~GaGD~f~a~~~a 230 (286)
T PRK05756 197 LVTADG----------------------------------------------AWHISRPLVDFMRQPVGVGDLTSALFLA 230 (286)
T ss_pred EEECCc----------------------------------------------eEEEecCccCCCCCCCChHHHHHHHHHH
Confidence 655443 45666666676 7999999999999999
Q ss_pred HHHcCCCchhhcccchHHH
Q 036840 295 SISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 295 ~l~~g~~~~~al~~a~aa~ 313 (327)
+|++|+++++|+++|++..
T Consensus 231 ~l~~g~~~~~al~~A~~~~ 249 (286)
T PRK05756 231 RLLQGGSLEEALEHTTAAV 249 (286)
T ss_pred HHhcCCCHHHHHHHHHHHH
Confidence 9999999999999976653
No 57
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.68 E-value=7e-15 Score=144.39 Aligned_cols=219 Identities=18% Similarity=0.214 Sum_probs=142.7
Q ss_pred ceEEEeecCCcc-hHHHHHHHH---hcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHHHHhh
Q 036840 23 PYMISALGLDMA-GNILLEHWK---SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHH 98 (327)
Q Consensus 23 v~~i~~vG~D~~-g~~i~~~l~---~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~ 98 (327)
...++.-|.|+. |.-|...++ ..|+.... ..+++...+..+... +... ...+..+.++.+.+.
T Consensus 3 ~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~--------v~Ta~t~Qnt~~~~~--i~~~---~~~~~~~q~~a~~~d 69 (448)
T PRK08573 3 PVALTIAGSDSGGGAGIEADLKTFAALGVHGAV--------AITSVTAQNTYEVRA--IHDL---PPEVVAAQIEAVWED 69 (448)
T ss_pred CEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecc--------cceEEEeecCCCceE--EEEC---CHHHHHHHHHHHHhc
Confidence 356778888844 466766554 55664332 222233333323222 2111 122344445544433
Q ss_pred hcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCch-------hhh---hh-hhcccccceEEeCCHHHHHHHHHhh
Q 036840 99 ISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSV-------TKS---RR-ITSVVKYITVVSPNEDELVAMANAL 167 (327)
Q Consensus 99 l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~-------~~~---~~-~~~~l~~~dvv~~n~~E~~~l~~~~ 167 (327)
+. .+.+.+..-.+.+.+..+++.+++.+++++|||..+ +.. +. ..++++++|++++|.+|++.|++..
T Consensus 70 ~~-~~~ik~G~l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~ 148 (448)
T PRK08573 70 MG-IDAAKTGMLSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMK 148 (448)
T ss_pred CC-CCEEEECCcCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCC
Confidence 33 344444332356888999999999999999999632 111 12 3567899999999999999998742
Q ss_pred cCCCCccCcCCCccchHHHHhcHHHHHHHHHH-cCCCEEEEEeCC----Cce-EEEEeccchhhhhcccCCCCCCCcccc
Q 036840 168 SGENMFRPIDRNKHSAESLFQTLKPAILVLLE-KGIRLVVLTLGS----DGV-LLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
. .+.++ ++++++.|.+ .|++.|+||.|+ +|+ +++..+.
T Consensus 149 i------------~~~~d----~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~-------------------- 192 (448)
T PRK08573 149 I------------RSVED----ARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGT-------------------- 192 (448)
T ss_pred C------------CCHHH----HHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCe--------------------
Confidence 1 12222 3566777764 799999999985 344 3333322
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAA 317 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~ 317 (327)
.++++.++++++|++||||+|.|+|+++|++|+++++|+++|+.......
T Consensus 193 --------------------------~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~~~~al 242 (448)
T PRK08573 193 --------------------------FREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKFITMAI 242 (448)
T ss_pred --------------------------EEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999887544433
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.68 E-value=1.1e-15 Score=139.99 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=114.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCC-CEEEecCchhh----------hhhh-hcccccceEEeCCHHHHHHHHHhhc
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNI-PVWFEPVSVTK----------SRRI-TSVVKYITVVSPNEDELVAMANALS 168 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~-~v~~d~~~~~~----------~~~~-~~~l~~~dvv~~n~~E~~~l~~~~~ 168 (327)
..+.+.+..-.+.+.+..+++.+++.+. ++++||..... .+.+ .++++++|++++|..|++.|++...
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 4677777654467788888888888775 89999963211 1223 3578999999999999999977421
Q ss_pred CCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCC--Cce----EEEEeccchhhhhcccCCCCCCCccccc
Q 036840 169 GENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGS--DGV----LLCSKELLSSMRIGLRKTKPYGFSRDLY 242 (327)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
.+.++ .++++++.+.+.|++.||||.|+ +|. +++.+++
T Consensus 153 ------------~~~~~---~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~--------------------- 196 (266)
T PRK06427 153 ------------ADTED---EMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEG--------------------- 196 (266)
T ss_pred ------------CCcHH---HHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCc---------------------
Confidence 11111 13567788888899999999998 553 4454432
Q ss_pred ccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHH
Q 036840 243 KTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTV 314 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~ 314 (327)
.++++.++++.+|++|+||+|.|+|++++++|+++++|+++|+....
T Consensus 197 -------------------------~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~g~~l~~A~~~A~~~~~ 243 (266)
T PRK06427 197 -------------------------EERFSAPRIPTKNTHGTGCTLSAAIAAELAKGASLLDAVQTAKDYVT 243 (266)
T ss_pred -------------------------EEEEEeeeECCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45677777778899999999999999999999999999999875544
No 59
>PRK07105 pyridoxamine kinase; Validated
Probab=99.64 E-value=5.1e-15 Score=137.07 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHH---HhCCCCEEEecCchh-----h------hhhhhcccccceEEeCCHHHHHHHHHh
Q 036840 101 SASVLMVDANLSPPALAASCKIA---AECNIPVWFEPVSVT-----K------SRRITSVVKYITVVSPNEDELVAMANA 166 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a---~~~~~~v~~d~~~~~-----~------~~~~~~~l~~~dvv~~n~~E~~~l~~~ 166 (327)
..+.+++..-.+.+.+..+.+.+ ++.++++++||.... . .+.+.++++++|++++|+.|++.|++.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 57778775444556555555555 556789999997421 1 134567899999999999999999774
Q ss_pred hcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEe-----CCCceEEEEeccchhhhhcccCCCCCCCcccc
Q 036840 167 LSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTL-----GSDGVLLCSKELLSSMRIGLRKTKPYGFSRDL 241 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~-----G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
... ....+.++ ++++++.+.+.|++.||||. |..|++++..++.
T Consensus 155 ~~~--------~~~~~~~~----~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~------------------- 203 (284)
T PRK07105 155 PYL--------EKSYSEEE----IKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATD------------------- 203 (284)
T ss_pred CcC--------cCCCCHHH----HHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCC-------------------
Confidence 210 00011222 35667888888999999999 6667877764321
Q ss_pred cccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 242 YKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
..++.+.+..+ +|++||||+|.|+|+++|++|+++++|+++|.+..
T Consensus 204 -------------------------~~~~~~~~~~~-~~~~GaGD~f~aa~~~~l~~g~~l~~av~~A~~~~ 249 (284)
T PRK07105 204 -------------------------RFWKVFCKYIP-AHYPGTGDIFTSVITGSLLQGDSLPIALDRAVQFI 249 (284)
T ss_pred -------------------------eEEEEeecccC-CCcCChhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 03444444433 79999999999999999999999999999976644
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.63 E-value=5e-15 Score=136.96 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=110.2
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHh-----CCCCEEEecCchh----------hhhhhh-cccccceEEeCCHHHHHHH
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAE-----CNIPVWFEPVSVT----------KSRRIT-SVVKYITVVSPNEDELVAM 163 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~-----~~~~v~~d~~~~~----------~~~~~~-~~l~~~dvv~~n~~E~~~l 163 (327)
.+.|.+++..-.+.+....+++..++ .+.++++||.... ..+.++ .+++.+|++++|..|++.|
T Consensus 87 ~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L 166 (281)
T PRK08176 87 RQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEIL 166 (281)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHH
Confidence 47888888554455555555555443 4788999997311 113343 5889999999999999999
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc-------eEEEEeccchhhhhcccCCCCCC
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG-------VLLCSKELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
++... .+.++ ++++++.+++.|++.||||.|+.| ++++++++
T Consensus 167 ~g~~~------------~~~~~----~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~--------------- 215 (281)
T PRK08176 167 TGKPC------------RTLDS----AIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADS--------------- 215 (281)
T ss_pred hCCCC------------CCHHH----HHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCc---------------
Confidence 87421 12222 356778888889999999999988 45555432
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--HHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA--KTV 314 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a--a~~ 314 (327)
.+. ...+...+|++|+||+|+|+|++++++|+++++|+++|+. ..+
T Consensus 216 -------------------------------~~~-~~~~~~~~~~~GaGD~faa~~~a~l~~g~~l~~Av~~A~~~v~~~ 263 (281)
T PRK08176 216 -------------------------------VNV-ISHPRVDTDLKGTGDLFCAELVSGLLKGKALTDAAHRAGLRVLEV 263 (281)
T ss_pred -------------------------------eEE-EecCccCCCCCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 2334445799999999999999999999999999999754 334
Q ss_pred HHHH
Q 036840 315 YAAA 318 (327)
Q Consensus 315 ~~~~ 318 (327)
++.+
T Consensus 264 i~~t 267 (281)
T PRK08176 264 MRYT 267 (281)
T ss_pred HHHH
Confidence 4443
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.62 E-value=1.9e-14 Score=132.40 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=142.2
Q ss_pred ceEEEeecCCcc-hHHHHHHHH---hcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HHh
Q 036840 23 PYMISALGLDMA-GNILLEHWK---SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FIH 97 (327)
Q Consensus 23 v~~i~~vG~D~~-g~~i~~~l~---~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~~ 97 (327)
...++.-|.|+. |.-|...++ ..|+.-- ...++....+..+.....+. .+.++.+.. +..
T Consensus 4 ~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~--------~~~T~~t~q~~~~~~~~~v~-------~~~~~~i~~ql~~ 68 (270)
T PRK12616 4 HKALTIAGSDSSGGAGIQADLKTFQEKNVYGM--------TALTVVVAMDPENSWDHQVF-------PIDTDTIRAQLST 68 (270)
T ss_pred CeEEEEEeeCCCchHHHHHHHHHHHHcCCccc--------ceeeEEeeEeCCCcceeEEE-------ECCHHHHHHHHHH
Confidence 355778888844 466776665 4454222 12223333333332111121 234444433 223
Q ss_pred hhc--CCcEEEEecCCCHHHHHHHHHHHHhCCC-CEEEecCchhh----------hhhhh-cccccceEEeCCHHHHHHH
Q 036840 98 HIS--SASVLMVDANLSPPALAASCKIAAECNI-PVWFEPVSVTK----------SRRIT-SVVKYITVVSPNEDELVAM 163 (327)
Q Consensus 98 ~l~--~~~~v~~~g~~~~~~~~~l~~~a~~~~~-~v~~d~~~~~~----------~~~~~-~~l~~~dvv~~n~~E~~~l 163 (327)
++. ..+.+.+..-.+.+.+..+++.+++.+. ++++||..... .+.+. .+++.+|++++|..|++.|
T Consensus 69 l~~d~~~~aikiG~l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 69 IVDGIGVDAMKTGMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred HHcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 344 3566777544467888888888888764 69999975321 13333 4788999999999999998
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCce------EEEEeccchhhhhcccCCCCCCC
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGV------LLCSKELLSSMRIGLRKTKPYGF 237 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
++... ..+.++ ++++++.+.+.|++.||||.|+.|. +++.++.
T Consensus 149 ~g~~~-----------~~~~~~----~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~---------------- 197 (270)
T PRK12616 149 SGMGE-----------IKTVEQ----MKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGET---------------- 197 (270)
T ss_pred cCCCC-----------CCCHHH----HHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCe----------------
Confidence 76310 012222 3567788888999999999998762 3343322
Q ss_pred cccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--HHHH
Q 036840 238 SRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA--KTVY 315 (327)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a--a~~~ 315 (327)
.++++.+.++.++++|+||+|.|+|+++|++|+++++|+++|.. ..++
T Consensus 198 ------------------------------~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~g~~l~~Av~~A~~~~~~~i 247 (270)
T PRK12616 198 ------------------------------AEVLESEMIDTPYTHGAGCTFSAAVTAELAKGSEVKEAIYAAKEFITAAI 247 (270)
T ss_pred ------------------------------EEEEEeeeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 45667777778899999999999999999999999999999654 4445
Q ss_pred HHH
Q 036840 316 AAA 318 (327)
Q Consensus 316 ~~~ 318 (327)
+.+
T Consensus 248 ~~s 250 (270)
T PRK12616 248 KES 250 (270)
T ss_pred HHH
Confidence 544
No 62
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.51 E-value=4.4e-13 Score=126.42 Aligned_cols=214 Identities=27% Similarity=0.420 Sum_probs=143.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecch
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVE 81 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~ 81 (327)
.+..||.+.|.|.++++||.++.+++++|+|. +++.. ..+
T Consensus 373 ~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~------------------------------------n~~~~----~~~ 412 (614)
T KOG3009|consen 373 VQAMGGVARNHADALARLGCDSVLISAVGDDN------------------------------------NGHFF----RQN 412 (614)
T ss_pred hhhccchhhhHHHHHHHhcCCeeEEEEeccCC------------------------------------cchhh----hhh
Confidence 46789999999999999999999999999992 11110 000
Q ss_pred hhcccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCCHHH
Q 036840 82 SIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPNEDE 159 (327)
Q Consensus 82 ~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n~~E 159 (327)
+-+.++...+++ +++++.+++++++.....+++ ++.++++|+|+|....+...+.+.+. .++.+++|..|
T Consensus 413 ------~~~~~e~~~dl~-~a~~I~~DsNiS~~~Ma~il~-ak~~k~~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~E 484 (614)
T KOG3009|consen 413 ------SHKIVESNEDLL-SADFILLDSNISVPVMARILE-AKKHKKQVWFEPTDIDKVKKVFKTLLVGAITAISPNANE 484 (614)
T ss_pred ------hhhhhhhhhhhh-cCCEEEEcCCCCHHHHHHHHH-hhhccCceEecCCCchhhhhhhhhcceeeEEeeCCCHHH
Confidence 111111122344 799999999999998888888 99999999999987554433444443 48889999999
Q ss_pred HHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcc
Q 036840 160 LVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSR 239 (327)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
+-.+.. +. .+.-.++-......+.+..+...+. ...+....|+|.-.+|+++...+..
T Consensus 485 ll~a~k---~~-~v~~nps~~q~~~~~~~~~~~~~~k-~~~~~s~~I~tl~~~G~l~~yr~k~----------------- 542 (614)
T KOG3009|consen 485 LLKAAK---LC-HVSVNPSVIQTADGVLELIEKEKTK-LLLNTSIFIVTLANKGSLVVYRNKL----------------- 542 (614)
T ss_pred HHHHhh---cC-ceeeChhhhccchHHHHHHHHHHHH-hhcccceEEEEeccCceEEEecCCC-----------------
Confidence 843322 11 1111111111112222222211221 2246778999999999988765431
Q ss_pred cccccccccccCCCccCCCCCCCCCcceeEeecCCCC--cccccCCCchhHHHHHHHHHHcCCCchhhcccc
Q 036840 240 DLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPA--SVVRLTGAGDCLVGGTLASISSGLDVMQSVAVD 309 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a 309 (327)
+++.+...|++++ +++...||||+|++||+.+++.+.++.+++.-+
T Consensus 543 ------------------------g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg 590 (614)
T KOG3009|consen 543 ------------------------GQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGG 590 (614)
T ss_pred ------------------------CCcccccCCCcccccceeEeccCCcccccceeehhhcCcchHhhcccc
Confidence 0111333444433 799999999999999999999999999999987
No 63
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.48 E-value=1.5e-12 Score=118.50 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=112.3
Q ss_pred HhhhcCCcEEEEecCCCH-HHHHHHHHHHHhCCCCEEEecCchhhhhhhh--cccccceEEeCCHHHHHHHHHhhcCCCC
Q 036840 96 IHHISSASVLMVDANLSP-PALAASCKIAAECNIPVWFEPVSVTKSRRIT--SVVKYITVVSPNEDELVAMANALSGENM 172 (327)
Q Consensus 96 ~~~l~~~~~v~~~g~~~~-~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~--~~l~~~dvv~~n~~E~~~l~~~~~~~~~ 172 (327)
...+.+.+++++.+.++. +....+++.++++++++++|+.......... .+.+..+++.||..|++.|++...
T Consensus 72 ~~~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~---- 147 (254)
T cd01171 72 LELLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALV---- 147 (254)
T ss_pred HhhhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCCh----
Confidence 345678999999876654 7788888888888999999987533211110 245679999999999999987421
Q ss_pred ccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccccccccccccCC
Q 036840 173 FRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSS 252 (327)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (327)
.+..+...++++.+.+.+. .+|+..|. +.++++.++
T Consensus 148 -----------~~~~~~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~------------------------------- 183 (254)
T cd01171 148 -----------EEIQADRLAAAREAAAKLG-ATVVLKGA-VTVIADPDG------------------------------- 183 (254)
T ss_pred -----------hhhhhHHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCC-------------------------------
Confidence 0111112455666766654 45555674 555655433
Q ss_pred CccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHHHHHHH
Q 036840 253 RYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKTVYAAA 318 (327)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~~~~~~ 318 (327)
.++++....+.++++|+||+|+|.+.+.+.+|+++++|+++|+....+...
T Consensus 184 ---------------~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~~~~~~a~~ 234 (254)
T cd01171 184 ---------------RVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLSPLEAAALAVYLHGLAGD 234 (254)
T ss_pred ---------------cEEEECCCCcccccCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345666667789999999999777777788999999999999777666553
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.45 E-value=1.2e-11 Score=123.30 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=137.5
Q ss_pred ceEEEeecCCcch-HHHHH---HHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHHHHhh
Q 036840 23 PYMISALGLDMAG-NILLE---HWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHH 98 (327)
Q Consensus 23 v~~i~~vG~D~~g-~~i~~---~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~ 98 (327)
...++.-|.|..| .-|.. .+...|+..-.+ .++....+..+-..+...+ ..+-.+.++ .+
T Consensus 10 ~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v--------~Talt~q~t~~v~~~~~~~-----~~~~~~ql~---~~ 73 (502)
T PLN02898 10 PHVLTVAGSDSGAGAGIQADIKACAARGVYCTTA--------ITAVTAQNTVGVQGVHAVP-----LDFVAEQLK---SV 73 (502)
T ss_pred CeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecce--------eeEEEEEcCCccceeeeCC-----HHHHHHHHH---HH
Confidence 3567888888444 44544 445667643321 2223233333322211111 111123333 34
Q ss_pred hcC--CcEEEEecCCCHHHHHHHHHHHHhCCCC-EEEecCchhh----------hhhh-hcccccceEEeCCHHHHHHHH
Q 036840 99 ISS--ASVLMVDANLSPPALAASCKIAAECNIP-VWFEPVSVTK----------SRRI-TSVVKYITVVSPNEDELVAMA 164 (327)
Q Consensus 99 l~~--~~~v~~~g~~~~~~~~~l~~~a~~~~~~-v~~d~~~~~~----------~~~~-~~~l~~~dvv~~n~~E~~~l~ 164 (327)
+.+ .+.+.+..-.+.+.+..+++.+++.+.+ +++||..... .+.+ .++++.+|++++|..|++.|+
T Consensus 74 ~~d~~~~aik~G~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~ 153 (502)
T PLN02898 74 LSDMPVDVVKTGMLPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALL 153 (502)
T ss_pred HhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHh
Confidence 443 5566664434678888899988888775 9999964211 1223 357889999999999999997
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc------eEEEEeccchhhhhcccCCCCCCCc
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG------VLLCSKELLSSMRIGLRKTKPYGFS 238 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
+.... .+.++ +.++++.+.+.|++.||||.|+.+ .+++.++.
T Consensus 154 g~~~~-----------~~~~~----~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~----------------- 201 (502)
T PLN02898 154 GGDPL-----------ETVAD----MRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTE----------------- 201 (502)
T ss_pred CCCCC-----------CCHHH----HHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCe-----------------
Confidence 63110 11222 366778888889999999999853 24444221
Q ss_pred ccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHHH
Q 036840 239 RDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAKT 313 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa~ 313 (327)
.++++.++++.++++|+||+|.|+|++++++|+++++|+++|+...
T Consensus 202 -----------------------------~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~G~~l~eAv~~A~~~v 247 (502)
T PLN02898 202 -----------------------------FHELRSSRIKTRNTHGTGCTLASCIAAELAKGSDMLSAVKVAKRYV 247 (502)
T ss_pred -----------------------------EEEEecceeCCCCCCchhhhHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5667777778899999999999999999999999999999965543
No 65
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.43 E-value=3.1e-12 Score=119.21 Aligned_cols=169 Identities=18% Similarity=0.134 Sum_probs=106.4
Q ss_pred cCCHHHHHHHHhhhcC-----CcEEEEecCC-CHHHHHHHHHHHH---hCC--CCEEEecCch-----h----hhhhhhc
Q 036840 86 FLTPDWIRQFIHHISS-----ASVLMVDANL-SPPALAASCKIAA---ECN--IPVWFEPVSV-----T----KSRRITS 145 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~-----~~~v~~~g~~-~~~~~~~l~~~a~---~~~--~~v~~d~~~~-----~----~~~~~~~ 145 (327)
.++++++..+.+.+.+ ...++++|.+ +.+....+++.++ +.+ +++++||.-. + ..+.+.+
T Consensus 56 ~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ 135 (296)
T PTZ00344 56 RLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRE 135 (296)
T ss_pred eCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHH
Confidence 4667666655444322 2245556655 4555566665553 344 5799997531 1 1234567
Q ss_pred ccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE---eCCCc----eEEEE
Q 036840 146 VVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT---LGSDG----VLLCS 218 (327)
Q Consensus 146 ~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~G----~~~~~ 218 (327)
+++++|++++|++|++.|++... .+.++ +.++++.+.+.|++.|||| .|..| +++..
T Consensus 136 ll~~~dii~pN~~E~~~L~g~~~------------~~~~~----~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~ 199 (296)
T PTZ00344 136 LIPYADVITPNQFEASLLSGVEV------------KDLSD----ALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSC 199 (296)
T ss_pred HhhhCCEEeCCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEe
Confidence 88899999999999999987421 11222 3566777877899999999 45455 34432
Q ss_pred eccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHc
Q 036840 219 KELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISS 298 (327)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~ 298 (327)
.... +.. ...+.++.++++ ++++|+||+|+|+|++.+.+
T Consensus 200 ~~~~---------------------------------------~~~-~~~~~~~~~~~~-~~~~GaGD~f~A~~~a~l~~ 238 (296)
T PTZ00344 200 RDKD---------------------------------------TKN-NKRFTGKVPYIE-GRYTGTGDLFAALLLAFSHQ 238 (296)
T ss_pred cccc---------------------------------------CCC-ceeEEEeccccC-CCCCCchHHHHHHHHHHHhc
Confidence 2110 000 003444444444 57799999999999988888
Q ss_pred CCCchhhcccchHH
Q 036840 299 GLDVMQSVAVDDAK 312 (327)
Q Consensus 299 g~~~~~al~~a~aa 312 (327)
| ++++|+++|.+.
T Consensus 239 g-~~~~a~~~A~a~ 251 (296)
T PTZ00344 239 H-PMDLAVGKAMGV 251 (296)
T ss_pred C-CHHHHHHHHHHH
Confidence 8 999999886543
No 66
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.43 E-value=2.8e-12 Score=127.93 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=140.1
Q ss_pred ceEEEeecCCcch-HHHHHHH---HhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HHh
Q 036840 23 PYMISALGLDMAG-NILLEHW---KSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FIH 97 (327)
Q Consensus 23 v~~i~~vG~D~~g-~~i~~~l---~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~~ 97 (327)
+..++.-|.|..| .-+...+ +..|+..-. ..+++...+..|-..+ ..+.++.+.. +..
T Consensus 231 ~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~--------~vta~t~qn~~~~~~~---------~~~~~~~~~~ql~~ 293 (504)
T PTZ00347 231 PTVLTVSGSDSGGGAGHQADLKTLEALGVYSTS--------ALTSLTAQNTKGVQQI---------QVVNEDFFAAQIDS 293 (504)
T ss_pred CeEEEEeCcCCCChHHHHHHHHHHHHcCCcccc--------hheeEEeEcCcceeeE---------EeCCHHHHHHHHHH
Confidence 4578888888554 4455444 466664421 1123334343332221 1245555544 434
Q ss_pred hhcCCcEEEE-ecCC-CHHHHHHHHHHHHhCCCCEEEecCchh-------hh-------hhh-hcccccceEEeCCHHHH
Q 036840 98 HISSASVLMV-DANL-SPPALAASCKIAAECNIPVWFEPVSVT-------KS-------RRI-TSVVKYITVVSPNEDEL 160 (327)
Q Consensus 98 ~l~~~~~v~~-~g~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~-------~~-------~~~-~~~l~~~dvv~~n~~E~ 160 (327)
++.+.++..+ .|.+ +.+.+..+++.++ ++++++||.... .. +.+ .++++.+|++++|..|+
T Consensus 294 l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea 371 (504)
T PTZ00347 294 VMSDFNISVVKLGLVPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEA 371 (504)
T ss_pred HHhCCCCCEEEECCcCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHH
Confidence 5555555443 4544 5677777877775 678999986521 10 112 25789999999999999
Q ss_pred HHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc-------eEEEEeccchhhhhcccCCC
Q 036840 161 VAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG-------VLLCSKELLSSMRIGLRKTK 233 (327)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~ 233 (327)
+.|++... ..+.++ ++++++.+.+.|++.||||.|+.| .+++..++.
T Consensus 372 ~~L~g~~~-----------~~~~~~----~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~----------- 425 (504)
T PTZ00347 372 ERILGRKE-----------ITGVYE----ARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKD----------- 425 (504)
T ss_pred HHHhCCCC-----------CCCHHH----HHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCC-----------
Confidence 99987410 011222 356677888889999999999963 234432210
Q ss_pred CCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--
Q 036840 234 PYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA-- 311 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a-- 311 (327)
..++++.++++++|++|+||+|+|+|++++++|+++++|+++|.+
T Consensus 426 ---------------------------------~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~l~eAv~~A~~~v 472 (504)
T PTZ00347 426 ---------------------------------RFYEFTANRIATINTHGTGCTLASAISSFLARGYTVPDAVERAIGYV 472 (504)
T ss_pred ---------------------------------eEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 056678877888999999999999999999999999999998654
Q ss_pred HHHHHHH
Q 036840 312 KTVYAAA 318 (327)
Q Consensus 312 a~~~~~~ 318 (327)
..+++.+
T Consensus 473 ~~~i~~~ 479 (504)
T PTZ00347 473 HEAIVRS 479 (504)
T ss_pred HHHHHhc
Confidence 3445444
No 67
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.35 E-value=4.7e-11 Score=124.24 Aligned_cols=218 Identities=14% Similarity=0.151 Sum_probs=142.5
Q ss_pred ceEEEeecCCcc-hHHHHHHHH---hcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HHh
Q 036840 23 PYMISALGLDMA-GNILLEHWK---SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FIH 97 (327)
Q Consensus 23 v~~i~~vG~D~~-g~~i~~~l~---~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~~ 97 (327)
..+++.-|.|+. |.-|...++ ..|+.-- ...+++...+..|-.. + ..++++.+.. +..
T Consensus 242 ~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~--------~viTaltaQn~~~v~~--v-------~~~~~~~v~~Ql~~ 304 (755)
T PRK09517 242 PRVLSIAGTDPTGGAGIQADLKSIAAGGGYGM--------CVVTALVAQNTHGVNT--I-------HTPPLTFLEEQLEA 304 (755)
T ss_pred CeEEEEeccCCCcHHHHHHHHHHHHHcCCccc--------chheeEeeEcccceeE--E-------eeCCHHHHHHHHHH
Confidence 567899999944 466777665 4454222 2223344444333222 2 1244555533 333
Q ss_pred hhcC--CcEEEEecCCCHHHHHHHHHHHHhC-CCCEEEecCchh----------hhhhhhcccccceEEeCCHHHHHHHH
Q 036840 98 HISS--ASVLMVDANLSPPALAASCKIAAEC-NIPVWFEPVSVT----------KSRRITSVVKYITVVSPNEDELVAMA 164 (327)
Q Consensus 98 ~l~~--~~~v~~~g~~~~~~~~~l~~~a~~~-~~~v~~d~~~~~----------~~~~~~~~l~~~dvv~~n~~E~~~l~ 164 (327)
++.+ .+.+-+..-.+.+.+..+++.+++. +.+|++||.... ..+.+.++++.+|++.+|..|++.|+
T Consensus 305 ~~~d~~~~aiKiGmL~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~ 384 (755)
T PRK09517 305 VFSDVTVDAVKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLC 384 (755)
T ss_pred HHcCCCCCEEEECCCCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHh
Confidence 4443 5666664434678888888888875 567999986421 11335578999999999999999998
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCC------CceEEEEeccchhhhhcccCCCCCCCc
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGS------DGVLLCSKELLSSMRIGLRKTKPYGFS 238 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~------~G~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
+... ..+.++ +.++++.+.+.+...||||.|+ .++++..++.
T Consensus 385 g~~~-----------~~~~~d----~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~----------------- 432 (755)
T PRK09517 385 GEAP-----------AITMDE----AIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGS----------------- 432 (755)
T ss_pred CCCC-----------CCCHHH----HHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCe-----------------
Confidence 7310 012222 2455667766533589999985 3555443221
Q ss_pred ccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--HHHHH
Q 036840 239 RDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA--KTVYA 316 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a--a~~~~ 316 (327)
.++++.+.++.+|++|+||+|.|+|+++|++|+++++|+++|.. ..+++
T Consensus 433 -----------------------------~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~G~sl~eAv~~A~~~v~~~i~ 483 (755)
T PRK09517 433 -----------------------------VHQVENPRVNTTNSHGTGCSLSAALATLIAAGESVEKALEWATRWLNEALR 483 (755)
T ss_pred -----------------------------EEEEeecccCCCCCcChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999998654 55665
Q ss_pred HH
Q 036840 317 AA 318 (327)
Q Consensus 317 ~~ 318 (327)
.+
T Consensus 484 ~a 485 (755)
T PRK09517 484 HA 485 (755)
T ss_pred hc
Confidence 54
No 68
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.34 E-value=1.8e-11 Score=111.07 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=102.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchh----------hhhhhhc-ccccceEEeCCHHHHHHHHHhhcC
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVT----------KSRRITS-VVKYITVVSPNEDELVAMANALSG 169 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~----------~~~~~~~-~l~~~dvv~~n~~E~~~l~~~~~~ 169 (327)
..+.+.+..-.+.+.+..+.+..++++.++++||.-.. ..+.+++ +++.+|++.||..|++.|++...
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i- 138 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREI- 138 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS---
T ss_pred cccEEEEcccCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCC-
Confidence 57788876555778888888888888899999996321 1233444 99999999999999999988421
Q ss_pred CCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC----c---eEEEEeccchhhhhcccCCCCCCCccccc
Q 036840 170 ENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD----G---VLLCSKELLSSMRIGLRKTKPYGFSRDLY 242 (327)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~----G---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
.+.++ +.++++.|++.|++.||||-++. + -+++ .+++
T Consensus 139 -----------~~~~~----~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~-~~~~-------------------- 182 (246)
T PF08543_consen 139 -----------NSEED----IEEAAKALLALGPKNVVITGGHLDGDEGIITDVLY-DGGE-------------------- 182 (246)
T ss_dssp -----------SSHHH----HHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEE-TTSE--------------------
T ss_pred -----------CChHh----HHHHHHHHHHhCCceEEEeeeccccccccccceee-eccc--------------------
Confidence 22333 47788999999999999998863 2 2223 2221
Q ss_pred ccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccch
Q 036840 243 KTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDD 310 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~ 310 (327)
.++++.+..+.....|.||.|.|.+++.|++|+++++|+..|.
T Consensus 183 -------------------------~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g~~l~~Av~~A~ 225 (246)
T PF08543_consen 183 -------------------------FYWLSSPRIPTGSFHGTGDLFSSALAAFLAKGYSLEEAVEKAK 225 (246)
T ss_dssp -------------------------EEEEEEEEECTSGCTTHHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred -------------------------eeecceeEEcCCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444444333468899999999999999999999999998853
No 69
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.30 E-value=1.6e-10 Score=106.36 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=127.6
Q ss_pred EEEeecCC-cchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCc
Q 036840 25 MISALGLD-MAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSAS 103 (327)
Q Consensus 25 ~i~~vG~D-~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~ 103 (327)
++..=|.| ..|..++..+...++-+..+.......+ ...+ ...+ ..+.. ..+. +.++.+.+.+..++
T Consensus 27 vliiaGs~~~~GA~ila~l~~~~~g~~~v~~~~~~~~--~~~i-~~~~-pe~~~-------~~~~-~~~~~~~~~~~~~d 94 (272)
T TIGR00196 27 VLIIGGSDDYSGAPLLAALAALRAGAGLVTVAAPENV--ITLI-NSVS-PELIV-------HRLG-WKVDEDEELLERYD 94 (272)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHhCCCeEEEEEchhh--HHHH-hhcC-CEEEE-------ecch-hhHHHHHhhhccCC
Confidence 34444556 6678888888876664443332211111 0001 1111 11111 1111 12333445668899
Q ss_pred EEEEecCC-CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccc
Q 036840 104 VLMVDANL-SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHS 182 (327)
Q Consensus 104 ~v~~~g~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~ 182 (327)
++++.+.+ +.+....+++.+++.++++++|+...............+++++||..|++.|++... .+
T Consensus 95 avvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~------------~~ 162 (272)
T TIGR00196 95 VVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALNLLTYDKPKREGEVILTPHPGEFKRLLGLVN------------EI 162 (272)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHHHHhhcccccCCCEEECCCHHHHHHHhCCch------------hh
Confidence 99998744 334467788888889999999996532211111113358999999999999987411 11
Q ss_pred hHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCC
Q 036840 183 AESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAG 262 (327)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (327)
.++ +.++++.+.+. ...+|++.|..++++...+.
T Consensus 163 ~~~----~~~aa~~l~~~-~~~vVv~kG~~~~i~~~~~~----------------------------------------- 196 (272)
T TIGR00196 163 QGD----RLEAAQDIAQK-LQAVVVLKGAADVIAAPDGD----------------------------------------- 196 (272)
T ss_pred hhh----HHHHHHHHHHH-hCCEEEEcCCCCEEEcCCCe-----------------------------------------
Confidence 122 24455666654 33588888999986653221
Q ss_pred CCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccc---hHHHHHHHH
Q 036840 263 GSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVD---DAKTVYAAA 318 (327)
Q Consensus 263 ~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a---~aa~~~~~~ 318 (327)
.+.. ..+....+++|+||+++|.+.+.+.+|.++.+|+..| +.+++..++
T Consensus 197 -----~~~~-~~~~~~~~~~GaGD~lag~iaa~la~g~~~~~A~~~a~~~~~~a~~~~~ 249 (272)
T TIGR00196 197 -----LWIN-KTGNAALAKGGTGDVLAGLIGGLLAQNLDPFDAACNAAFAHGLAGDLAL 249 (272)
T ss_pred -----EEEE-CCCCCccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3345678899999995555555556899999999766 555554443
No 70
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.29 E-value=5.2e-11 Score=119.44 Aligned_cols=222 Identities=17% Similarity=0.156 Sum_probs=138.8
Q ss_pred CCCceEEEeecCCcch-HHHHHHH---HhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-
Q 036840 20 GSKPYMISALGLDMAG-NILLEHW---KSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ- 94 (327)
Q Consensus 20 G~~v~~i~~vG~D~~g-~~i~~~l---~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~- 94 (327)
+....+++.=|.|..| ..|...+ ...|+..-. ..+++...+..+ ...+ ..+.++.+..
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~--------v~Talt~q~t~~--v~~v-------~~~~~~~i~~q 89 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMA--------VITALVAQNTRG--VRAV-------HVPPADFLRAQ 89 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecc--------hhheEeeecCcc--eeee-------ccCCHHHHHHH
Confidence 4456778888999665 4455544 456654331 222333333323 1111 1244554433
Q ss_pred HHhhhc--CCcEEEEecCCCHHHHHHHHHHHHhCCC-CEEEecCchh----------hhhhhhcccccceEEeCCHHHHH
Q 036840 95 FIHHIS--SASVLMVDANLSPPALAASCKIAAECNI-PVWFEPVSVT----------KSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 95 ~~~~l~--~~~~v~~~g~~~~~~~~~l~~~a~~~~~-~v~~d~~~~~----------~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
+..++. ..+.+.+..-.+.+.+..+.+..++... +|++||.-+. ..+.+.++++.+|+|++|..|++
T Consensus 90 l~~l~~d~~~~aikiG~l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~ 169 (530)
T PRK14713 90 LDAVSDDVTVDAVKIGMLGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELA 169 (530)
T ss_pred HHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHH
Confidence 333333 3566766433356677777777666443 5899996421 12345678999999999999999
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc-----eEEEEeccchhhhhcccCCCCCC
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG-----VLLCSKELLSSMRIGLRKTKPYG 236 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~~~ 236 (327)
.|++.... .+.++ +.++++.+.+.+...||||.|+.+ .+++..+++
T Consensus 170 ~Ltg~~~~-----------~~~~d----~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~-------------- 220 (530)
T PRK14713 170 VLLGEPPA-----------TTWEE----ALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGA-------------- 220 (530)
T ss_pred HHhCCCCC-----------CCHHH----HHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCe--------------
Confidence 99774110 12222 245567776654468999988642 233333221
Q ss_pred CcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH--HHH
Q 036840 237 FSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA--KTV 314 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a--a~~ 314 (327)
.++++.++++.+|++|+||+|.|+|+++|++|+++++|+++|.. ..+
T Consensus 221 -------------------------------~~~~~~~~v~~~~t~GaGD~fsaalaa~La~G~~l~eAv~~A~~~v~~~ 269 (530)
T PRK14713 221 -------------------------------VTEVPGPRVDTRNTHGTGCSLSSALATRLGRGGDWAAALRWATAWLHGA 269 (530)
T ss_pred -------------------------------EEEEeeeeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45677777788999999999999999999999999999999765 445
Q ss_pred HHHH
Q 036840 315 YAAA 318 (327)
Q Consensus 315 ~~~~ 318 (327)
++.+
T Consensus 270 i~~a 273 (530)
T PRK14713 270 IAAG 273 (530)
T ss_pred HHhC
Confidence 5444
No 71
>PLN02978 pyridoxal kinase
Probab=99.22 E-value=6.5e-10 Score=104.17 Aligned_cols=180 Identities=18% Similarity=0.139 Sum_probs=107.9
Q ss_pred cCCHHHHHHHHhhhcC-----CcEEEEecCCCHHH---HHHHHHHHHh--CCCCEEEecCchhh---------hhhhh-c
Q 036840 86 FLTPDWIRQFIHHISS-----ASVLMVDANLSPPA---LAASCKIAAE--CNIPVWFEPVSVTK---------SRRIT-S 145 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~-----~~~v~~~g~~~~~~---~~~l~~~a~~--~~~~v~~d~~~~~~---------~~~~~-~ 145 (327)
.++++++..+.+.++. .+.+++..-.+.+. +..+++.+++ .++++++||..... .+.++ .
T Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ 145 (308)
T PLN02978 66 VLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREK 145 (308)
T ss_pred eCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHH
Confidence 3556566654443432 45565543224433 4455555554 45779999974221 12243 5
Q ss_pred ccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCC-CceEEEEeccchh
Q 036840 146 VVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGS-DGVLLCSKELLSS 224 (327)
Q Consensus 146 ~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~ 224 (327)
+++.+|++++|..|++.|++... .+.++ +.++++.+.+.|++.||||.++ .|.+........
T Consensus 146 ll~~adiitPN~~Ea~~L~g~~~------------~~~~~----~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~- 208 (308)
T PLN02978 146 VVPLATMLTPNQFEAEQLTGIRI------------VTEED----AREACAILHAAGPSKVVITSIDIDGKLLLVGSHRK- 208 (308)
T ss_pred HHhhCCeeccCHHHHHHHhCCCC------------CCHHH----HHHHHHHHHHhCCCEEEEEEecCCCCEEEEEeccc-
Confidence 89999999999999999987421 11222 3566788888899999998754 343322110000
Q ss_pred hhhcccCCCCCCCcccccccccccccCCCccCCCCCCC-CCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcC-CCc
Q 036840 225 MRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAG-GSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSG-LDV 302 (327)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-~~~ 302 (327)
.++ .+. .++++.++++.. ++|+||+|+|.+++.+.+| .++
T Consensus 209 -----------------------------------~~~~~~~--~~~~~~~~i~~~-~~GtGD~fsA~laa~l~~g~~~l 250 (308)
T PLN02978 209 -----------------------------------EKGARPE--QFKIVIPKIPAY-FTGTGDLMAALLLGWSHKYPDNL 250 (308)
T ss_pred -----------------------------------ccCCCCc--eEEEEccCCCCC-CCCchHHHHHHHHHHHhcCCcCH
Confidence 000 000 344555555444 5899999999888888887 799
Q ss_pred hhhcccchH--HHHHHHHHH
Q 036840 303 MQSVAVDDA--KTVYAAANV 320 (327)
Q Consensus 303 ~~al~~a~a--a~~~~~~~~ 320 (327)
++|++.|.. ..+++.+..
T Consensus 251 ~~A~~~A~~~v~~~i~~t~~ 270 (308)
T PLN02978 251 DKAAELAVSSLQAVLRRTLA 270 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 999998644 444555433
No 72
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.22 E-value=1.8e-09 Score=97.45 Aligned_cols=216 Identities=19% Similarity=0.229 Sum_probs=142.6
Q ss_pred ceEEEeecCCcch-HHHHHHHH---hcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HHh
Q 036840 23 PYMISALGLDMAG-NILLEHWK---SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FIH 97 (327)
Q Consensus 23 v~~i~~vG~D~~g-~~i~~~l~---~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~~ 97 (327)
...++.-|.|.-| .-|...|+ ..||.-- ..-+++.-.+..| ...+ ..+.++.+.. +..
T Consensus 4 ~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~--------saITaltaQNt~g--V~~v-------~~v~~~~v~~Ql~a 66 (263)
T COG0351 4 PVVLTIAGSDSSGGAGIQADLKTFQALGVYGM--------SAITALTAQNTLG--VHGV-------HPVPPEFVEAQLDA 66 (263)
T ss_pred ceEEEEeccCCCccHHHHHHHHHHHhcCCccc--------eEEEEEEEeecCc--eeeE-------EeCCHHHHHHHHHH
Confidence 4678888999554 67876665 4454221 1222333333333 2222 1245555543 233
Q ss_pred hhcC--CcEEEEecCCCHHHHHHHHHHHHhCC-CCEEEecCchhh----------hh-hhhcccccceEEeCCHHHHHHH
Q 036840 98 HISS--ASVLMVDANLSPPALAASCKIAAECN-IPVWFEPVSVTK----------SR-RITSVVKYITVVSPNEDELVAM 163 (327)
Q Consensus 98 ~l~~--~~~v~~~g~~~~~~~~~l~~~a~~~~-~~v~~d~~~~~~----------~~-~~~~~l~~~dvv~~n~~E~~~l 163 (327)
.++. .+.+-+.--.+.+.+..+++..++++ .++++||.-..+ .+ ..+++++.++++.||..|++.|
T Consensus 67 v~~D~~v~avKtGML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L 146 (263)
T COG0351 67 VFSDIPVDAVKTGMLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEAL 146 (263)
T ss_pred HhhcCCCCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHH
Confidence 4454 34444432336788889999999988 789999964211 12 2347999999999999999999
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCce----EEEEeccchhhhhcccCCCCCCCcc
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGV----LLCSKELLSSMRIGLRKTKPYGFSR 239 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~----~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
++... ..+.++ ++++.+.+.+.|++.|+|+-|+..- +++..+.
T Consensus 147 ~g~~~-----------i~~~~d----~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~------------------ 193 (263)
T COG0351 147 SGLPK-----------IKTEED----MKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGS------------------ 193 (263)
T ss_pred cCCCc-----------cCCHHH----HHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCc------------------
Confidence 88410 122333 3566677778899999999987542 3333322
Q ss_pred cccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccch--HHHHHH
Q 036840 240 DLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDD--AKTVYA 316 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~--aa~~~~ 316 (327)
++.++.+.++-.++-|+|++|.+++.+.|++|.++++|++.|. +..|++
T Consensus 194 ----------------------------~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 194 ----------------------------FYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred ----------------------------eEEEeccccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 6777777777788999999999999999999999999998854 344444
No 73
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.15 E-value=5.1e-10 Score=101.36 Aligned_cols=162 Identities=21% Similarity=0.199 Sum_probs=104.9
Q ss_pred HHhhhcCCcEEEEecC-CCH---HHHHHHHHHHHhCCCCEEEecCchhh----hhhhhccccc--ceEEeCCHHHHHHHH
Q 036840 95 FIHHISSASVLMVDAN-LSP---PALAASCKIAAECNIPVWFEPVSVTK----SRRITSVVKY--ITVVSPNEDELVAMA 164 (327)
Q Consensus 95 ~~~~l~~~~~v~~~g~-~~~---~~~~~l~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~--~dvv~~n~~E~~~l~ 164 (327)
..+.++++|++++... ..+ +.+..+++.+++.++++++||..... .+.+.+++.. +|++.+|..|+..|+
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 4456788999999743 222 44555566688899999999974211 1223444554 899999999999998
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCccccccc
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKT 244 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (327)
+.....+. .+....+.++ +.++++.+.+.+...|++| |.... ++.+++
T Consensus 123 g~~~~~~~---~~~~~~~~~~----~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~----------------------- 170 (242)
T cd01170 123 GLTGLGKG---VDSSSSDEED----ALELAKALARKYGAVVVVT-GEVDY-ITDGER----------------------- 170 (242)
T ss_pred CCCCCcCc---ccCCCcchHH----HHHHHHHHHHHhCCEEEEE-CCCcE-EEECCE-----------------------
Confidence 75321000 0000000122 3556666766554578899 65554 444332
Q ss_pred ccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchH
Q 036840 245 VTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDA 311 (327)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~a 311 (327)
.++++..+..+.+..|+||+|+|.+.+.+++|.++.+|+..|..
T Consensus 171 -----------------------~~~~~~~~~~~~~v~GtGdtLa~aiAa~LA~g~~~~~A~~~A~~ 214 (242)
T cd01170 171 -----------------------VVVVKNGHPLLTKITGTGCLLGAVIAAFLAVGDDPLEAAVSAVL 214 (242)
T ss_pred -----------------------EEEEeCCCccccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56666544444566899999999999999999999999877644
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.04 E-value=9.2e-09 Score=93.39 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=112.1
Q ss_pred CCHHHHHHHHh------hhcCCcEEEEecCCCHHHHHHHHHH---HHh--CCCCEEEecCchh----------hhhhhhc
Q 036840 87 LTPDWIRQFIH------HISSASVLMVDANLSPPALAASCKI---AAE--CNIPVWFEPVSVT----------KSRRITS 145 (327)
Q Consensus 87 l~~~~i~~~~~------~l~~~~~v~~~g~~~~~~~~~l~~~---a~~--~~~~v~~d~~~~~----------~~~~~~~ 145 (327)
+.++++..+.+ .+..+|.++...--+.+.+..+.+. .|+ ++..+.+||..-. ......+
T Consensus 53 ~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~ 132 (281)
T COG2240 53 MPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDE 132 (281)
T ss_pred CCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHh
Confidence 44555554332 4556777776554455555555443 333 3556899986311 1122347
Q ss_pred ccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC-----ceEEEEec
Q 036840 146 VVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD-----GVLLCSKE 220 (327)
Q Consensus 146 ~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~-----G~~~~~~~ 220 (327)
+++.+|++.||.-|++.|++... ++.++ ..++++.|.+.|++.|+||.=.. |.+++...
T Consensus 133 lip~AdiiTPN~fELe~Ltg~~~------------~~~~d----a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~ 196 (281)
T COG2240 133 LLPLADIITPNIFELEILTGKPL------------NTLDD----AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGK 196 (281)
T ss_pred hcchhhEeCCCHHHHHHHhCCCC------------CCHHH----HHHHHHHHhhcCCCEEEEecccccCCCCceEEEecc
Confidence 99999999999999999988632 22333 36677888888999999996433 45555443
Q ss_pred cchhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEee-cCCCCcccccCCCchhHHHHHHHHHHcC
Q 036840 221 LLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHF-PALPASVVRLTGAGDCLVGGTLASISSG 299 (327)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvdttGAGDaF~ag~l~~l~~g 299 (327)
..+ + ..|+ |-.+ ..++|.||.|+|-|++.+++|
T Consensus 197 ~~~--------------------------------------~-----~~h~~~~v~---~~~~GtGDL~sallla~lL~g 230 (281)
T COG2240 197 SAE--------------------------------------L-----AWHISPLVP---FIPNGTGDLFSALLLARLLEG 230 (281)
T ss_pred chh--------------------------------------h-----hhhhhhcCC---CCCCCchHHHHHHHHHHHHcC
Confidence 311 0 2333 2223 349999999999999999999
Q ss_pred CCchhhcccc--hHHHHHHHHHH
Q 036840 300 LDVMQSVAVD--DAKTVYAAANV 320 (327)
Q Consensus 300 ~~~~~al~~a--~aa~~~~~~~~ 320 (327)
.+..+++..+ .+..+++.+++
T Consensus 231 ~~~~~al~~~~~~V~evl~~T~~ 253 (281)
T COG2240 231 LSLTQALERATAAVYEVLQETQK 253 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 44555555544
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=98.87 E-value=3.7e-07 Score=85.53 Aligned_cols=243 Identities=16% Similarity=0.176 Sum_probs=136.1
Q ss_pred CceEEEeecCCcc-hHHHHHHHH---hcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHH-HH
Q 036840 22 KPYMISALGLDMA-GNILLEHWK---SAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQ-FI 96 (327)
Q Consensus 22 ~v~~i~~vG~D~~-g~~i~~~l~---~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~-~~ 96 (327)
....++.-|.|+. |.-|...++ ..|+.-- ...+++...+..+-.. + ..++++.+.. +.
T Consensus 4 ~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~--------sviTalTaQnt~~V~~--v-------~~v~~~~i~~Ql~ 66 (321)
T PTZ00493 4 VSNILSIAGSDSCGGAGMQADIKTAMGLGCHCC--------TALVVLTAQNTKEVKR--I-------VEIEEKFIVEQLD 66 (321)
T ss_pred CCEEEEEeeeCCCCchHHHHHHHHHHHcCCccc--------eEEEEEEEEcCCceEE--E-------EECCHHHHHHHHH
Confidence 3567888899944 466776665 4444221 2223344444444222 2 1244555543 22
Q ss_pred hhhcC--CcEEEEecCCCHHHHHHHHHHHHhCC------CCEEEecCch-------hh-h---hh-hhcccccceEEeCC
Q 036840 97 HHISS--ASVLMVDANLSPPALAASCKIAAECN------IPVWFEPVSV-------TK-S---RR-ITSVVKYITVVSPN 156 (327)
Q Consensus 97 ~~l~~--~~~v~~~g~~~~~~~~~l~~~a~~~~------~~v~~d~~~~-------~~-~---~~-~~~~l~~~dvv~~n 156 (327)
..+.+ .+++-+.--.+.+.+..+++..++.+ .+|++||.-. .. . +. .+.+++.+|++.||
T Consensus 67 all~D~~i~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN 146 (321)
T PTZ00493 67 SIFADVTIDVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPN 146 (321)
T ss_pred HHHhCCCCCEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCC
Confidence 34443 46666643336677777777776542 2489999631 11 1 11 24589999999999
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHH-cCCCEEEEEeCCCc------e------EEEEeccch
Q 036840 157 EDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLE-KGIRLVVLTLGSDG------V------LLCSKELLS 223 (327)
Q Consensus 157 ~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G------~------~~~~~~~~~ 223 (327)
..|++.|++..... ++ .+.++ ++++++.|.+ .|++.|+||-|+.. . +++.++...
T Consensus 147 ~~Ea~~L~g~~~~~-----~~---~~~~~----~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~ 214 (321)
T PTZ00493 147 FYECKVILEALDCQ-----MD---LSKAN----MTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGS 214 (321)
T ss_pred HHHHHHHhCCCccc-----CC---CCHHH----HHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccc
Confidence 99999997621000 00 01222 4677888876 69999999988742 1 122110000
Q ss_pred hhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCc-ceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCc
Q 036840 224 SMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQ-FFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDV 302 (327)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~ 302 (327)
+. + +++... .+.+... .+.+++....++..++-|.||+|.+++++.|++|+++
T Consensus 215 ------------------~~----~---~~~~~~-~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~l 268 (321)
T PTZ00493 215 ------------------YP----T---GEKQQI-DAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHNI 268 (321)
T ss_pred ------------------cc----c---cccccc-ccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCCH
Confidence 00 0 000000 0000000 0023444444445677899999999999999999999
Q ss_pred hhhcccch--HHHHHHHHH
Q 036840 303 MQSVAVDD--AKTVYAAAN 319 (327)
Q Consensus 303 ~~al~~a~--aa~~~~~~~ 319 (327)
++|++.|. +..+++.+.
T Consensus 269 ~~Av~~A~~fv~~aI~~s~ 287 (321)
T PTZ00493 269 LQSCIESKKYIYNCIRYAY 287 (321)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 99999864 455555553
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.69 E-value=4.8e-07 Score=82.96 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=98.5
Q ss_pred hhhcCCcEEEEec-CCCHHH---HHHHHHHHHhCCCCEEEecCchh---hh-hhhhcccc--cceEEeCCHHHHHHHHHh
Q 036840 97 HHISSASVLMVDA-NLSPPA---LAASCKIAAECNIPVWFEPVSVT---KS-RRITSVVK--YITVVSPNEDELVAMANA 166 (327)
Q Consensus 97 ~~l~~~~~v~~~g-~~~~~~---~~~l~~~a~~~~~~v~~d~~~~~---~~-~~~~~~l~--~~dvv~~n~~E~~~l~~~ 166 (327)
+.+..++.+++.. .+..+. +..+++.+++.++|+++||.... .+ +...++++ ..+++.+|..|+..|++.
T Consensus 50 ~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g~ 129 (263)
T PRK09355 50 EMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAALAGE 129 (263)
T ss_pred HHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHHHhCC
Confidence 4567788888853 344433 33445557888999999997532 11 22233443 579999999999999874
Q ss_pred hcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCccccccccc
Q 036840 167 LSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVT 246 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.... +..++.. +.++ ..++++.+.+++-..|++|-+.+ +++..+.
T Consensus 130 ~~~~---~~vd~~~-~~~~----~~~~a~~la~~~~~~VvvkG~~d--~I~~~~~------------------------- 174 (263)
T PRK09355 130 AAET---KGVDSTD-GSAD----AVEIAKAAAKKYGTVVVVTGEVD--YITDGER------------------------- 174 (263)
T ss_pred Cccc---CCcCCCC-CHHH----HHHHHHHHHHHhCCEEEEECCCc--EEEeCCE-------------------------
Confidence 2110 0011100 1122 24566677766545788885554 3333221
Q ss_pred ccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccchHH
Q 036840 247 SRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~aa 312 (327)
.+.++.-.....+.+|+||++.|.+.+.+..|.++.+|+..|...
T Consensus 175 ---------------------~~~~~~g~~~~~~v~GtGc~L~~~iaa~lA~g~~~~~A~~~A~~~ 219 (263)
T PRK09355 175 ---------------------VVSVHNGHPLMTKVTGTGCLLSAVVAAFAAVEKDYLEAAAAACAV 219 (263)
T ss_pred ---------------------EEEEeCCCcccCCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344442222244559999999999999999999999988776543
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.48 E-value=1.8e-06 Score=78.55 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=95.2
Q ss_pred hhhcCCcEEEEec-CCCH---HHHHHHHHHHHhCCCCEEEecCchhh----hhhhhcccc--cceEEeCCHHHHHHHHHh
Q 036840 97 HHISSASVLMVDA-NLSP---PALAASCKIAAECNIPVWFEPVSVTK----SRRITSVVK--YITVVSPNEDELVAMANA 166 (327)
Q Consensus 97 ~~l~~~~~v~~~g-~~~~---~~~~~l~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~--~~dvv~~n~~E~~~l~~~ 166 (327)
+.++.++.+.+.. .+.. +.+..+++.+++.++|+++||..... .....++++ .+++|.+|..|+..|++.
T Consensus 45 ~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g~ 124 (249)
T TIGR00694 45 ELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASLAGE 124 (249)
T ss_pred HHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHHhCC
Confidence 4567788888864 3443 33445566677789999999975321 122244565 479999999999999874
Q ss_pred hcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCccccccccc
Q 036840 167 LSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVT 246 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.... +..+.. .+.++. .++++.+.++.-..|++|-+.+ +++..+.
T Consensus 125 ~~~~---~gvd~~-~~~~d~----~~~a~~la~~~~~~VllkG~~D--~i~~~~~------------------------- 169 (249)
T TIGR00694 125 TGLM---KGVDSG-EGAADA----IRAAQQAAQKYGTVVVITGEVD--YVSDGTS------------------------- 169 (249)
T ss_pred CCCC---CCcCCc-cchHHH----HHHHHHHHHHhCCEEEEECCCc--EEEeCCE-------------------------
Confidence 2100 000000 012222 4456666665333777775543 3443321
Q ss_pred ccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccch
Q 036840 247 SRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDD 310 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~ 310 (327)
.+.+..-+...-..+|.||++.+.+.+.+.+|.++.+|+..|.
T Consensus 170 ---------------------~~~~~~g~~~~~~~~GtGc~LssaIaa~LA~g~~~~~A~~~A~ 212 (249)
T TIGR00694 170 ---------------------VYTIHNGTELLGKITGSGCLLGSVVAAFCAVEEDPLDAAISAC 212 (249)
T ss_pred ---------------------EEEECCCChHHhCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3333322211122479999999999999999999999887765
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.47 E-value=3e-06 Score=80.42 Aligned_cols=181 Identities=18% Similarity=0.198 Sum_probs=115.8
Q ss_pred CCHHHHHHH-Hhhhc--CCcEEEEecCCCHHHHHHHHHHHHhCCC-CEEEecCch-----------hhhhhhhcccccce
Q 036840 87 LTPDWIRQF-IHHIS--SASVLMVDANLSPPALAASCKIAAECNI-PVWFEPVSV-----------TKSRRITSVVKYIT 151 (327)
Q Consensus 87 l~~~~i~~~-~~~l~--~~~~v~~~g~~~~~~~~~l~~~a~~~~~-~v~~d~~~~-----------~~~~~~~~~l~~~d 151 (327)
+.++.+.+. ..-|+ .++++-..--.+++.+..+.+.+++.++ .+++||.-. .-.-..+++++.+|
T Consensus 75 lpp~~V~qqidacL~Di~C~VvKTGML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~ad 154 (523)
T KOG2598|consen 75 LPPSFVSQQIDACLSDIKCDVVKTGMLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFAD 154 (523)
T ss_pred CCHHHHHHHHHHHhhcCcccEEeecCcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHH
Confidence 455555432 22334 3566655333345556566666666666 488888421 11234678999999
Q ss_pred EEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceE---EEEeccchhhhhc
Q 036840 152 VVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVL---LCSKELLSSMRIG 228 (327)
Q Consensus 152 vv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~---~~~~~~~~~~~~~ 228 (327)
++.+|..|+..|++.... ++ +...+..+ +++.++.+.+.|++.|+++.|+-..- +.+++..
T Consensus 155 iltPNI~Ea~~Ll~~~~~--~~----~~i~~v~d----i~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~------ 218 (523)
T KOG2598|consen 155 ILTPNIPEAFILLKKEKR--EI----SKIQSVFD----IAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDS------ 218 (523)
T ss_pred HhCCChHHHHHHHhhccc--CC----cccccHHH----HHHHHHHHHhcCcceEEEeCCCcCccccccccCccc------
Confidence 999999999999885221 11 12233433 36777888889999999998875432 2222221
Q ss_pred ccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhccc
Q 036840 229 LRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAV 308 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~ 308 (327)
..++-. =-+.| . .++.++.+-++...+-|.|-++++++++-|+.|.++.+|+..
T Consensus 219 ------~~~~~D-----------vlydG-~--------~F~~f~~~~~~t~~tHGtgCtLaSAIASnLA~g~sl~qAv~~ 272 (523)
T KOG2598|consen 219 ------DKYTVD-----------VLYDG-K--------EFYIFKSPYLATKHTHGTGCTLASAIASNLARGYSLLQAVQG 272 (523)
T ss_pred ------CCceEE-----------EEEec-c--------eEEEecccccccccccCccchHHHHHHHHHhhcCCHHHHHHH
Confidence 001111 11111 1 177788877778899999999999999999999999999887
Q ss_pred c
Q 036840 309 D 309 (327)
Q Consensus 309 a 309 (327)
|
T Consensus 273 a 273 (523)
T KOG2598|consen 273 A 273 (523)
T ss_pred H
Confidence 5
No 79
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.47 E-value=2e-05 Score=76.68 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=113.0
Q ss_pred ceecCCchHHHHHHHHHcCCCceE--EEeecCCcchHHHHHHHHhcCC----------------------CccCeeecCC
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYM--ISALGLDMAGNILLEHWKSAGL----------------------STEGIRRQKD 57 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~--i~~vG~D~~g~~i~~~l~~~gV----------------------~~~~i~~~~~ 57 (327)
+.+.||++..+|..|+.+|.++.+ +..++ +...+.+...+| +-..++..=+
T Consensus 87 ~~rmGGnAgimAn~la~lg~~~Vi~~~~~ls-----k~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~IfE 161 (453)
T PRK14039 87 EIRMGGNAGIMANVLSELGASRVVPNVAVPS-----KTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVFD 161 (453)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEcCCCCC-----HHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEEE
Confidence 468999999999999999998644 22332 223333311111 1111111112
Q ss_pred CCceEEEE-----EecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC--C----C-----HHHHHHHHH
Q 036840 58 IDTAVVSN-----ILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN--L----S-----PPALAASCK 121 (327)
Q Consensus 58 ~~t~~~~~-----~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~--~----~-----~~~~~~l~~ 121 (327)
.+.+..+. +.-+...|.+..++.....-.+.++.-+.+.+...+.|+++++|. + + .+.+.++.+
T Consensus 162 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~ 241 (453)
T PRK14039 162 FREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLA 241 (453)
T ss_pred eCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHH
Confidence 33444442 333444455444443322222344444445555568999999983 1 0 122223222
Q ss_pred ---HH--HhCCCCEEEecCchhhh----hhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHH
Q 036840 122 ---IA--AECNIPVWFEPVSVTKS----RRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKP 192 (327)
Q Consensus 122 ---~a--~~~~~~v~~d~~~~~~~----~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (327)
.. +.+++++-++..+.... ..+..+++++|.+.+|++|+..+...+.... .+.+. .+++++ -+
T Consensus 242 ~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~-~~i~~---~~~~~v----~e 313 (453)
T PRK14039 242 QLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPA-EGILE---MNAEAI----GE 313 (453)
T ss_pred HHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccch-hhHhh---cCHHHH----HH
Confidence 22 23568999998764322 3455788999999999999999999864310 00110 123443 44
Q ss_pred HHHHHHH-cCCCEEEEEeCCCceEEEEe
Q 036840 193 AILVLLE-KGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 193 ~~~~l~~-~g~~~vvvt~G~~G~~~~~~ 219 (327)
++..|.+ .|++.++|..-..-+.+...
T Consensus 314 a~~~l~~~~~le~l~vHT~~y~l~i~~~ 341 (453)
T PRK14039 314 AACQLASESGLQRLIIHTREFVLCVSKP 341 (453)
T ss_pred HHHHHHHHcCCCEEEEEecceEEEEecC
Confidence 4555554 59998888765554444444
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.38 E-value=1.5e-05 Score=77.72 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=111.5
Q ss_pred eecCCchHHHHHHHHHcCCCc--eEEEeecCCcchHHHHHHHHhc-CCCcc------C----------------eeecCC
Q 036840 3 YVLGGVARNVAECMSKLGSKP--YMISALGLDMAGNILLEHWKSA-GLSTE------G----------------IRRQKD 57 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~~v--~~i~~vG~D~~g~~i~~~l~~~-gV~~~------~----------------i~~~~~ 57 (327)
.+.||++..+|..|+++|.++ .+...++. ...+.+... ++-.- . ++..=+
T Consensus 99 ~rmGGqAgimAn~la~lg~~~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~E 173 (463)
T PRK03979 99 ERMGGQAGIISNLLAILDLKKVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIFE 173 (463)
T ss_pred EEeCChHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEEE
Confidence 479999999999999999884 44444443 233344211 11100 0 111112
Q ss_pred CCceEEEE-----EecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC--CC---------HHHH---HH
Q 036840 58 IDTAVVSN-----ILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN--LS---------PPAL---AA 118 (327)
Q Consensus 58 ~~t~~~~~-----~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~--~~---------~~~~---~~ 118 (327)
.+.+..+. +.-+...|.+..++.....-.+.++.-+.+.++-...|+++++|. +. .+.. ..
T Consensus 174 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~ 253 (463)
T PRK03979 174 FKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKE 253 (463)
T ss_pred eCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHHHH
Confidence 23344442 222334444444443322222344444444444467999999983 11 1112 22
Q ss_pred HHHHH--HhCCCCEEEecCchhhh----hhhhcccccceEEeCCHHHHHHHHHhhcCCCCcc-CcCCCccchHHHHhcHH
Q 036840 119 SCKIA--AECNIPVWFEPVSVTKS----RRITSVVKYITVVSPNEDELVAMANALSGENMFR-PIDRNKHSAESLFQTLK 191 (327)
Q Consensus 119 l~~~a--~~~~~~v~~d~~~~~~~----~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (327)
.++.. +.+++++-|+..+.... ..+..+++++|.+.+|+.|+..+...+...+... .+. .++++++ -
T Consensus 254 ~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~--~~~i~~v----~ 327 (463)
T PRK03979 254 DIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILK--ESRIEDV----I 327 (463)
T ss_pred HHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhc--cccHHHH----H
Confidence 22333 34678999988664322 3455788999999999999999998775533111 111 1223333 4
Q ss_pred HHHHHHHH-cCCCEEEEEeCCCceEEEEe
Q 036840 192 PAILVLLE-KGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 192 ~~~~~l~~-~g~~~vvvt~G~~G~~~~~~ 219 (327)
+++..|++ .|++.+.|..-..-+.++.+
T Consensus 328 ~a~~~L~~~~~leri~vHT~~y~l~i~~~ 356 (463)
T PRK03979 328 EGAKILLDELNLERVQVHTLYYIMYICKK 356 (463)
T ss_pred HHHHHHHHHcCCCEEEEEecceeeEEecc
Confidence 44555554 58888887765555555443
No 81
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.38 E-value=4.3e-05 Score=74.25 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=111.5
Q ss_pred eecCCchHHHHHHHHHcCCCc--eEEEeecCCcchHHHHHHHHhc-CC-------------------------CccCeee
Q 036840 3 YVLGGVARNVAECMSKLGSKP--YMISALGLDMAGNILLEHWKSA-GL-------------------------STEGIRR 54 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~~v--~~i~~vG~D~~g~~i~~~l~~~-gV-------------------------~~~~i~~ 54 (327)
.+.||++..+|..|+++|.++ .+...++. ...+.+... ++ ++++|.
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~-----~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~- 159 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK-----RQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIF- 159 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEE-
Confidence 368999999999999999885 33344443 223333322 11 111111
Q ss_pred cCCCCceEEE-----EEecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC--CC------------HHH
Q 036840 55 QKDIDTAVVS-----NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN--LS------------PPA 115 (327)
Q Consensus 55 ~~~~~t~~~~-----~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~--~~------------~~~ 115 (327)
+.+.+..+ -+.-+...|.+..++.....-.+.++.-+-+.++-..+|.++++|. +. .+-
T Consensus 160 --Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er 237 (446)
T TIGR02045 160 --EFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLER 237 (446)
T ss_pred --EeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHH
Confidence 12333333 2333444444444443322222333333333445577999999983 11 112
Q ss_pred HHHHHHHH-HhCCCCEEEecCchhhh----hhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcH
Q 036840 116 LAASCKIA-AECNIPVWFEPVSVTKS----RRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTL 190 (327)
Q Consensus 116 ~~~l~~~a-~~~~~~v~~d~~~~~~~----~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (327)
..+.++.. ..+++++-|+..+.... ..+..+++++|.+.+|+.|+..+...+...+....+- ..++++++
T Consensus 238 ~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~-~~~~i~~v---- 312 (446)
T TIGR02045 238 AKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIF-RYNRIEDL---- 312 (446)
T ss_pred HHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhh-ccccHHHH----
Confidence 22333333 23788999988664322 3455788999999999999999998775532211110 01223333
Q ss_pred HHHHHHHHH-cCCCEEEEEeCCCceEEEEe
Q 036840 191 KPAILVLLE-KGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 191 ~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~ 219 (327)
-+++..|++ .|++.+.|..-..-+.+...
T Consensus 313 i~a~~~l~~~~~leri~vHT~~y~l~i~~~ 342 (446)
T TIGR02045 313 ILGAKILLDELNLEVVQVHTIYYIMYITHA 342 (446)
T ss_pred HHHHHHHHHHcCCCEEEEEecceeEEEecc
Confidence 344555554 58988888766555555443
No 82
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=98.07 E-value=0.00054 Score=66.76 Aligned_cols=204 Identities=14% Similarity=0.167 Sum_probs=112.6
Q ss_pred ceecCCchHHHHHHHHH-cCCCceEEEeecCCcchHHHHHHHHhcC------------------------CCccCeeecC
Q 036840 2 NYVLGGVARNVAECMSK-LGSKPYMISALGLDMAGNILLEHWKSAG------------------------LSTEGIRRQK 56 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~-LG~~v~~i~~vG~D~~g~~i~~~l~~~g------------------------V~~~~i~~~~ 56 (327)
+.+.||++..+|..|+. .|.+| +..++.. .+.-.+.+-..+ -+++.|.
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~--- 178 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIY--- 178 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEE---
Confidence 36899999999999985 56665 5555532 111111111111 1222222
Q ss_pred CCCceEEE-EEecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC--CC----HHHHH---HHHHHHHhC
Q 036840 57 DIDTAVVS-NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN--LS----PPALA---ASCKIAAEC 126 (327)
Q Consensus 57 ~~~t~~~~-~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~--~~----~~~~~---~l~~~a~~~ 126 (327)
+.+.+..+ -+.-+...|.+...+.....-.+.++..+.+.++..+.|+++++|. +. .+.+. ..++..+..
T Consensus 179 Ey~~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~ 258 (453)
T PRK14038 179 EFPRGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNER 258 (453)
T ss_pred EeCCCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcC
Confidence 12222222 2233444455444443333223455555566677789999999983 11 12222 223333456
Q ss_pred CCCEEEecCchh---hhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCc-cCcCCCccchHHHHhcHHHHHHHHHH-cC
Q 036840 127 NIPVWFEPVSVT---KSRRITSVVKYITVVSPNEDELVAMANALSGENMF-RPIDRNKHSAESLFQTLKPAILVLLE-KG 201 (327)
Q Consensus 127 ~~~v~~d~~~~~---~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~g 201 (327)
++++-++..+.. -++.+.++++++|-+.+|++|+..+...+..+... +.++.+...++++ .+++.+|++ .|
T Consensus 259 ~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v----~e~~~~L~~~~g 334 (453)
T PRK14038 259 GIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAV----TEAMLKLAEKTG 334 (453)
T ss_pred CceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHH----HHHHHHHHHHcC
Confidence 788999887542 23444568999999999999999999976553211 1112111234443 455566665 59
Q ss_pred CCEEEEEeCCCceEE
Q 036840 202 IRLVVLTLGSDGVLL 216 (327)
Q Consensus 202 ~~~vvvt~G~~G~~~ 216 (327)
++.+.|..-..-+.+
T Consensus 335 leri~vHT~~y~l~i 349 (453)
T PRK14038 335 VKRIHFHTYGYYLAL 349 (453)
T ss_pred CCEEEEEecceeEEE
Confidence 988887755443433
No 83
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.06 E-value=0.00013 Score=65.59 Aligned_cols=173 Identities=19% Similarity=0.221 Sum_probs=98.1
Q ss_pred CCHHHHHHHHhh-----hcCCcEEEEecCCCHHHHHHHH---HHHHh--CCCCEEEecCchh------h---hhhhhccc
Q 036840 87 LTPDWIRQFIHH-----ISSASVLMVDANLSPPALAASC---KIAAE--CNIPVWFEPVSVT------K---SRRITSVV 147 (327)
Q Consensus 87 l~~~~i~~~~~~-----l~~~~~v~~~g~~~~~~~~~l~---~~a~~--~~~~v~~d~~~~~------~---~~~~~~~l 147 (327)
+.++++..+.+. +..++.+....-.....+..+. +..++ ++..-+|||..-+ . -...++++
T Consensus 62 ~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i 141 (308)
T KOG2599|consen 62 LNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLI 141 (308)
T ss_pred cCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhh
Confidence 455555444332 3355665543322233444433 33333 4456777885311 1 12235554
Q ss_pred c-cceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC----c-eEEEEecc
Q 036840 148 K-YITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD----G-VLLCSKEL 221 (327)
Q Consensus 148 ~-~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~----G-~~~~~~~~ 221 (327)
. .+|++.||.-|++.|+|... ++.++ ..++++++..+|++.||||...- | .+++-...
T Consensus 142 ~~ladiiTPNqFE~EiLtg~~I------------~t~ed----a~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~ 205 (308)
T KOG2599|consen 142 IPLADIITPNQFEAEILTGMEI------------RTEED----AKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSS 205 (308)
T ss_pred cchhhhcCCcchhhhhhcCCee------------ccHHH----HHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEec
Confidence 4 59999999999999988643 33333 36778899999999999997543 3 22332222
Q ss_pred chhhhhcccCCCCCCCcccccccccccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcC--
Q 036840 222 LSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSG-- 299 (327)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g-- 299 (327)
. +. ..+.+.+|..+ ---||.||-|.|-+++-+..-
T Consensus 206 ~---------------------------------------~~-~~f~~~ipki~---~~FtGTGDLfsaLLla~~~~~~~ 242 (308)
T KOG2599|consen 206 C---------------------------------------GS-ERFRYLIPKID---GVFTGTGDLFSALLLAWLHESPD 242 (308)
T ss_pred c---------------------------------------CC-ceEEEEecccc---eEEecccHHHHHHHHHHHhcCCC
Confidence 1 00 11345555543 235899999999888777654
Q ss_pred -CCchhhccc--chHHHHHHHH
Q 036840 300 -LDVMQSVAV--DDAKTVYAAA 318 (327)
Q Consensus 300 -~~~~~al~~--a~aa~~~~~~ 318 (327)
.++..++.. ++..++++-+
T Consensus 243 ~~~l~~a~e~~ls~~~~viqkT 264 (308)
T KOG2599|consen 243 NDDLSKAVEQVLSSVQAVIQKT 264 (308)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 345555444 4445554443
No 84
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.83 E-value=0.00011 Score=72.12 Aligned_cols=206 Identities=13% Similarity=0.164 Sum_probs=98.5
Q ss_pred eecCCchHHHHHHHHHcCC-CceEEEeecCCcchHHHHHHHHhcCC-------------------------CccCeeecC
Q 036840 3 YVLGGVARNVAECMSKLGS-KPYMISALGLDMAGNILLEHWKSAGL-------------------------STEGIRRQK 56 (327)
Q Consensus 3 ~~~GG~~~N~a~~la~LG~-~v~~i~~vG~D~~g~~i~~~l~~~gV-------------------------~~~~i~~~~ 56 (327)
.+.||++.-+|..||.++. +|.+.+.++.. .+.+.| ..+| +++.|.
T Consensus 92 ~r~GGnA~imAn~la~l~~~~Vil~~p~~sk----~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~Il--- 163 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGCPVILYAPILSK----EQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLIL--- 163 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-SEEEEE-SS--H----HHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEE---
T ss_pred cccCchHHHHHHHHHhCCCCEEEEecCcCCH----HHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEE---
Confidence 3589999999999998854 44444434432 334444 2221 111111
Q ss_pred CCCceEEE-EEecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecC--CC---------HHHHH---HHHH
Q 036840 57 DIDTAVVS-NILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDAN--LS---------PPALA---ASCK 121 (327)
Q Consensus 57 ~~~t~~~~-~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~--~~---------~~~~~---~l~~ 121 (327)
+.+.+..+ -+..+...|.+..++.......+.++..+.+.++..+.|+++++|. +. .+.+. +.++
T Consensus 164 Ey~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~ 243 (444)
T PF04587_consen 164 EYKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIK 243 (444)
T ss_dssp EE-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHH
T ss_pred EcCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHH
Confidence 11111111 1112333344443443333333445555556666778999999982 11 12222 2223
Q ss_pred HHH-hCCCCEEEecCchhh----hhhhhcccccceEEeCCHHHHHHHHHhhcCCCCc-cCcCCCccchHHHHhcHHHHHH
Q 036840 122 IAA-ECNIPVWFEPVSVTK----SRRITSVVKYITVVSPNEDELVAMANALSGENMF-RPIDRNKHSAESLFQTLKPAIL 195 (327)
Q Consensus 122 ~a~-~~~~~v~~d~~~~~~----~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (327)
..+ ..+++|-++..+... ...+..+++++|.+.+|++|+..+...+.+.... .....+.-+. ..+.++..
T Consensus 244 ~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~v~~----~~v~~~~~ 319 (444)
T PF04587_consen 244 LLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLLSVLGGPELSERIDSYPRVEV----DQVLEALI 319 (444)
T ss_dssp HHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHHHTT-HHHHHHHHHSSSHHH----HHHHHHHH
T ss_pred hccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHHHHhCCCccccccccCCCccH----HHHHHHHH
Confidence 344 688999999876432 2345578899999999999999998876542100 0000000011 12345556
Q ss_pred HHHHc-CCCEEEEEeCCCceEEEEec
Q 036840 196 VLLEK-GIRLVVLTLGSDGVLLCSKE 220 (327)
Q Consensus 196 ~l~~~-g~~~vvvt~G~~G~~~~~~~ 220 (327)
+|.+. |+..+.+..-..-+++..++
T Consensus 320 ~L~~~~~l~RIhvHTl~y~i~~~~~~ 345 (444)
T PF04587_consen 320 WLLKEYGLTRIHVHTLAYHIIVTKKD 345 (444)
T ss_dssp HHHHHH--SEEEEEETTEEEEEESST
T ss_pred HHHHHcCCCEEEEEcchheEEEEecC
Confidence 66654 88887777665555554443
No 85
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.52 E-value=0.003 Score=63.26 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=87.4
Q ss_pred hhhcCCcEEEEecCC-CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccC
Q 036840 97 HHISSASVLMVDANL-SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRP 175 (327)
Q Consensus 97 ~~l~~~~~v~~~g~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~ 175 (327)
+.++.++.+++...+ ..+....+++.+++.++|+++|+...+....... .....++.+|.-|+..|++.... .
T Consensus 316 ~~~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-~~~~~VLTPh~gE~~rL~~~~~~-----~ 389 (508)
T PRK10565 316 ESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD-KRHNRVITPHPGEAARLLGCSVA-----E 389 (508)
T ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-ccCCeEECCCHHHHHHHhCCChh-----h
Confidence 455778998887543 2333455557777888999999976322111001 12256999999999999873110 0
Q ss_pred cCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccccccccccccCCCcc
Q 036840 176 IDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSRYS 255 (327)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (327)
++ .+. .+.++.+.++.-..||+| |..- ++...++
T Consensus 390 v~------~~~----~~~a~~~a~~~~~~vvlK-G~~~-iI~~~~~---------------------------------- 423 (508)
T PRK10565 390 IE------SDR----LLSARRLVKRYGGVVVLK-GAGT-VIAAEPD---------------------------------- 423 (508)
T ss_pred hh------hhH----HHHHHHHHHHhCCEEEEe-CCCc-EEEcCCc----------------------------------
Confidence 00 011 123344444322355554 4433 3443322
Q ss_pred CCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccch
Q 036840 256 GAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDD 310 (327)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~ 310 (327)
..++..-...-.-++|.||.++|.+.+-+.++.++.+|+..|+
T Consensus 424 ------------~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~ 466 (508)
T PRK10565 424 ------------ALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGC 466 (508)
T ss_pred ------------eEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2233332234566799999999888888888989888776654
No 86
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=97.50 E-value=0.0048 Score=60.55 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=91.8
Q ss_pred ceecCCchHHHHHHHHHcCC-CceEEEeecCCcchHHHHHHHHhcC------------CCccCeeecCCCCceEEE-EEe
Q 036840 2 NYVLGGVARNVAECMSKLGS-KPYMISALGLDMAGNILLEHWKSAG------------LSTEGIRRQKDIDTAVVS-NIL 67 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~-~v~~i~~vG~D~~g~~i~~~l~~~g------------V~~~~i~~~~~~~t~~~~-~~~ 67 (327)
+.+.||++.-+|.-|+.+|. +|.+-+.+..... .+.+...+ -+++.|. +.+.+..+ -+.
T Consensus 102 ~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~----~~L~~d~~i~~p~~e~~~~~d~IHlIl---Ey~~G~~~~~~~ 174 (445)
T cd01938 102 ELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQ----AELFLDGPIVVPTFENLIEEDEIHLIL---EYPRGESWGDFV 174 (445)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEecCCCcHHH----HHhCCCCCeeecccccCCCCCccEEEE---EcCCCCEecceE
Confidence 46899999999999999998 7777766544322 22222111 1111111 12222222 222
Q ss_pred cCCCCEEEEEecchhhcccCCHHHHHHHHhhhcCCcEEEEecCC-------CHHHHHHHHHHHH------hCCCCEEEec
Q 036840 68 DVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANL-------SPPALAASCKIAA------ECNIPVWFEP 134 (327)
Q Consensus 68 d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~~~~v~~~g~~-------~~~~~~~l~~~a~------~~~~~v~~d~ 134 (327)
-+...|.+...+.... ..+.++.++.+.+. +.|+++++|.- ......+.++.++ ...++|-|+.
T Consensus 175 aPraNRfI~~~d~~n~-l~~~ee~~~~i~~~--~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~ 251 (445)
T cd01938 175 APRANRFIFHDDDNNP-MLMREEFFSSILEF--QPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLEL 251 (445)
T ss_pred cCCCCeEEEecCCcch-hhhhHHHHHHHhhc--CCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEe
Confidence 3444455544443332 33455555543321 49999999821 1222333332222 2348899988
Q ss_pred Cchhhh----hhhhcccccceEEeCCHHHHHHHHHhhcCCC
Q 036840 135 VSVTKS----RRITSVVKYITVVSPNEDELVAMANALSGEN 171 (327)
Q Consensus 135 ~~~~~~----~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~ 171 (327)
.+.... ..+..+++++|-+.+|+.|+..+...+.+..
T Consensus 252 As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg~~~ 292 (445)
T cd01938 252 ASTVDEELREEILHEVVPYVDSLGLNEQELANLLQVLGGPH 292 (445)
T ss_pred cccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhCCCc
Confidence 764332 3456788999999999999999999876543
No 87
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.49 E-value=0.0058 Score=55.28 Aligned_cols=155 Identities=24% Similarity=0.281 Sum_probs=89.1
Q ss_pred hhhcCCcEEEEe-cCCCH---HHHHHHHHHHHhCCCCEEEecCch----hhhhhhhcccc--cceEEeCCHHHHHHHHHh
Q 036840 97 HHISSASVLMVD-ANLSP---PALAASCKIAAECNIPVWFEPVSV----TKSRRITSVVK--YITVVSPNEDELVAMANA 166 (327)
Q Consensus 97 ~~l~~~~~v~~~-g~~~~---~~~~~l~~~a~~~~~~v~~d~~~~----~~~~~~~~~l~--~~dvv~~n~~E~~~l~~~ 166 (327)
+..+.++.+++. |.++. +.....++.+++.++|+++||... .+.+...++|. ++++|+.|..|...|.+.
T Consensus 45 e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~ 124 (246)
T PF02110_consen 45 EFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAGE 124 (246)
T ss_dssp HHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTC
T ss_pred HHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCc
Confidence 345668888886 44554 455666778889999999999753 33455677773 689999999999999886
Q ss_pred hcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCccccccccc
Q 036840 167 LSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVT 246 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
.... +-.++...+ .+ ..+.++.+.++--..|++| |+.-.+. ....
T Consensus 125 ~~~~---kGVDs~~~~-~~----~~~~a~~lA~k~~~vVvvT-G~~D~Is-dg~~------------------------- 169 (246)
T PF02110_consen 125 DSKA---KGVDSGDSD-ED----AIEAAKQLAQKYNCVVVVT-GEVDYIS-DGNR------------------------- 169 (246)
T ss_dssp CCCS---CSSSSSCGS-HH----HHHHHHHHHHHTTSEEEEE-SSSEEEE-ESSC-------------------------
T ss_pred CCCC---CCcCcCCcc-hH----HHHHHHHHHHhcCCEEEEe-cCCcEEE-CCCe-------------------------
Confidence 3221 112222222 11 2344555554422244444 6554432 2221
Q ss_pred ccccCCCccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcc
Q 036840 247 SRCHSSRYSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVA 307 (327)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~ 307 (327)
.+.++.-..-.-.-||.|+...+-..+.+....++.++..
T Consensus 170 ---------------------~~~i~nG~~~l~~itGtGC~lgaliaaf~av~~d~~~aa~ 209 (246)
T PF02110_consen 170 ---------------------VYRIPNGSPLLSKITGTGCMLGALIAAFLAVAEDPLEAAV 209 (246)
T ss_dssp ---------------------EEEECSSSGGGGGSTTHHHHHHHHHHHHHCCCSSHHHHHH
T ss_pred ---------------------EEEeCCCChHhcceeccchHHHHHHHHHHhccccchHHHH
Confidence 4555544333445699999877766666666566666553
No 88
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=96.97 E-value=0.011 Score=53.46 Aligned_cols=150 Identities=14% Similarity=0.178 Sum_probs=87.5
Q ss_pred HhhhcCCcEEEEecCCC-HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCcc
Q 036840 96 IHHISSASVLMVDANLS-PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFR 174 (327)
Q Consensus 96 ~~~l~~~~~v~~~g~~~-~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~ 174 (327)
.+.++++|.+.+.+.+. .+....+++...+...++++|....+............-|+.|+.-|+..|++....
T Consensus 62 ~~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~----- 136 (242)
T PF01256_consen 62 LELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALNLLAENPKKRNAPVILTPHPGEFARLLGKSVE----- 136 (242)
T ss_dssp HHHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCH-----
T ss_pred HhhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHHHHHhccccCCCCEEECCCHHHHHHHhCCccc-----
Confidence 35678899999976432 233444555556667899999875432222113344567899999999999886321
Q ss_pred CcCCCccchHHHHhcHHHHHHHHHH-cCCCEEEEEeCCCceEEEEeccchhhhhcccCCCCCCCcccccccccccccCCC
Q 036840 175 PIDRNKHSAESLFQTLKPAILVLLE-KGIRLVVLTLGSDGVLLCSKELLSSMRIGLRKTKPYGFSRDLYKTVTSRCHSSR 253 (327)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (327)
+.+.-.+.++++.+ .+. .||++ |..-. ++..++
T Consensus 137 -----------~~~~~~~~a~~~a~~~~~-~vvLK-G~~t~-I~~p~~-------------------------------- 170 (242)
T PF01256_consen 137 -----------IQEDRIEAAREFAKEYGA-VVVLK-GAVTI-IASPGG-------------------------------- 170 (242)
T ss_dssp -----------HCCSHHHHHHHHHHHHTS-EEEEE-STSSE-EEEETS--------------------------------
T ss_pred -----------chhhHHHHHHHHHhhcCc-EEEEe-CCCcE-EEecCc--------------------------------
Confidence 11111233344433 354 45554 55444 444343
Q ss_pred ccCCCCCCCCCcceeEeecCCCCcccccCCCchhHHHHHHHHHHcCCCchhhcccch
Q 036840 254 YSGAMEPAGGSQFFAVHFPALPASVVRLTGAGDCLVGGTLASISSGLDVMQSVAVDD 310 (327)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaF~ag~l~~l~~g~~~~~al~~a~ 310 (327)
..++..-...-.-+-|.||.++|-+..-+.+++++.+|...|.
T Consensus 171 --------------~~~~n~~gn~~la~gGsGDvLaGii~~llaq~~~~~~Aa~~av 213 (242)
T PF01256_consen 171 --------------RVYVNPTGNPGLATGGSGDVLAGIIAGLLAQGYDPFEAACLAV 213 (242)
T ss_dssp --------------EEEEE----GGGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred --------------ceeEeCCCCCCCCCCCcccHHHHHHHHHHHccCCHHHHHHHHH
Confidence 2333332234578899999998888888889999999877644
No 89
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=96.92 E-value=0.022 Score=51.37 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=54.2
Q ss_pred CHHHHHHHHhhhcCCcEEEEe-cCCCH---HHHHHHHHHHHhCCCCEEEecCchh----hhhhhhccccc--ceEEeCCH
Q 036840 88 TPDWIRQFIHHISSASVLMVD-ANLSP---PALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVKY--ITVVSPNE 157 (327)
Q Consensus 88 ~~~~i~~~~~~l~~~~~v~~~-g~~~~---~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~~--~dvv~~n~ 157 (327)
.+++++ +..+-++.+++. |.++. +.....++.+++.+.|+++||.... +.+...++|.+ .+++..|.
T Consensus 45 ~~eE~~---e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~ 121 (265)
T COG2145 45 APEEVE---EFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNA 121 (265)
T ss_pred CHHHHH---HHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccH
Confidence 444444 344556777775 44544 4566777889999999999997632 33455667764 79999999
Q ss_pred HHHHHHHHhh
Q 036840 158 DELVAMANAL 167 (327)
Q Consensus 158 ~E~~~l~~~~ 167 (327)
.|...|.+.-
T Consensus 122 sEI~~Lag~~ 131 (265)
T COG2145 122 SEIAALAGEA 131 (265)
T ss_pred HHHHHHhccc
Confidence 9999998653
No 90
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.21 Score=47.57 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecCC-------CH-------HHHHHHHHHHHh-CCCCEEEecCchhh----hhhhhcc
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDANL-------SP-------PALAASCKIAAE-CNIPVWFEPVSVTK----SRRITSV 146 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~~-------~~-------~~~~~l~~~a~~-~~~~v~~d~~~~~~----~~~~~~~ 146 (327)
.+.+++...+.++....|..+++|.- .. +...+-++..++ .++.+-++..+... ...+..+
T Consensus 210 ~v~~~~~~~l~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~i 289 (466)
T COG4809 210 EVREEIREFLDEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNI 289 (466)
T ss_pred eecHHHHHHHHHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHH
Confidence 35677777777888889999999821 11 122233334445 77888888765332 2455668
Q ss_pred cccceEEeCCHHHHHHHHHhhcC
Q 036840 147 VKYITVVSPNEDELVAMANALSG 169 (327)
Q Consensus 147 l~~~dvv~~n~~E~~~l~~~~~~ 169 (327)
++.++-|-+|+.|++.++..++.
T Consensus 290 l~~v~SvGldE~ElA~vl~vlG~ 312 (466)
T COG4809 290 LSIVYSVGLDEVELANVLNVLGY 312 (466)
T ss_pred HhhhhhcCCCHHHHHHHHHhhCh
Confidence 89999999999999999988753
No 91
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=1.3 Score=40.13 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=50.9
Q ss_pred HhhhcCCcEEEEecCC--C---HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhc-ccc-cc-eEEeCCHHHHHHHHHh
Q 036840 96 IHHISSASVLMVDANL--S---PPALAASCKIAAECNIPVWFEPVSVTKSRRITS-VVK-YI-TVVSPNEDELVAMANA 166 (327)
Q Consensus 96 ~~~l~~~~~v~~~g~~--~---~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~-~l~-~~-dvv~~n~~E~~~l~~~ 166 (327)
++.|.+-.++++.+.+ . -.....++++++.+++|++.|....|--+...+ ++. +. -|+.||..|+..|+..
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~ 174 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDA 174 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHH
Confidence 3567888888886533 2 245667888899999999999988764332222 332 33 4689999999999886
No 92
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=94.33 E-value=0.7 Score=43.57 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=90.4
Q ss_pred ceecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcC--CCccCeeecCCCCceEEE-EEecCCCCEEEEEe
Q 036840 2 NYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAG--LSTEGIRRQKDIDTAVVS-NILDVNGELAAAVA 78 (327)
Q Consensus 2 ~~~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~g--V~~~~i~~~~~~~t~~~~-~~~d~~g~~~~~~~ 78 (327)
+-+.||++.-.|.-.+.-| .++++|..|.-.....+-+..+-.| |.-+.+++.=+...|-.+ -.+.+...|.+...
T Consensus 139 ~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~~~I~~DdiHlILEYK~Gd~~G~~VAP~anR~I~~~ 217 (478)
T KOG4184|consen 139 NWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLILEYKAGDKWGPYVAPRANRYILHN 217 (478)
T ss_pred hhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhcccCcCcCCceEEEEEeccCCcccccccccccceeeec
Confidence 5678998877777666666 7889999987765544444444333 222222221111111111 01224444554444
Q ss_pred cchhhcccCCHHHHHHHHhhhc--CCcEEEEecCC-----CHHHHHHHHHHHH------hCCCCEEEecCchhhh----h
Q 036840 79 SVESIEKFLTPDWIRQFIHHIS--SASVLMVDANL-----SPPALAASCKIAA------ECNIPVWFEPVSVTKS----R 141 (327)
Q Consensus 79 ~~~~~~~~l~~~~i~~~~~~l~--~~~~v~~~g~~-----~~~~~~~l~~~a~------~~~~~v~~d~~~~~~~----~ 141 (327)
+.+. ..| ..++.+-+.|+ +.|+++++|-- +.+....=++..+ ..|+|+-+++.+...+ .
T Consensus 218 D~~n--~~m--~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~~~~l~~~ 293 (478)
T KOG4184|consen 218 DRNN--PHM--RAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMTNRELMSS 293 (478)
T ss_pred CCCC--hHH--HHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHHHHHHHHH
Confidence 3322 112 11222222333 58999999831 2221111111111 2688899988775543 3
Q ss_pred hhhcccccceEEeCCHHHHHHHHHhhcCC
Q 036840 142 RITSVVKYITVVSPNEDELVAMANALSGE 170 (327)
Q Consensus 142 ~~~~~l~~~dvv~~n~~E~~~l~~~~~~~ 170 (327)
.+..+++|+|-+-+|+.|+..|.....+.
T Consensus 294 i~h~VlPyVdSLGlNEQEL~fL~q~a~gp 322 (478)
T KOG4184|consen 294 IVHQVLPYVDSLGLNEQELLFLTQSASGP 322 (478)
T ss_pred HHHHhhhhccccCCCHHHHHHHHHHhcCC
Confidence 34568999999999999999999887664
No 93
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=1.9 Score=39.97 Aligned_cols=69 Identities=10% Similarity=0.204 Sum_probs=41.7
Q ss_pred hhcCCcEEEEecCC-CHHHHHHHHHHHHhCC-CCEEEecCchhhhhhhhccccc-ceEEeCCHHHHHHHHHh
Q 036840 98 HISSASVLMVDANL-SPPALAASCKIAAECN-IPVWFEPVSVTKSRRITSVVKY-ITVVSPNEDELVAMANA 166 (327)
Q Consensus 98 ~l~~~~~v~~~g~~-~~~~~~~l~~~a~~~~-~~v~~d~~~~~~~~~~~~~l~~-~dvv~~n~~E~~~l~~~ 166 (327)
...++|.+.+.+.+ ..+....+++..-+.. .|+++|....+.......++.. --|+.|+.-|+..|++.
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~ 169 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLGT 169 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCC
Confidence 44679999997533 2233334444433444 8999999764321222222222 26889999999998774
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=88.89 E-value=5.5 Score=35.30 Aligned_cols=89 Identities=7% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC-----CHHHHHHHHHhhcCCCC
Q 036840 101 SASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP-----NEDELVAMANALSGENM 172 (327)
Q Consensus 101 ~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~-----n~~E~~~l~~~~~~~~~ 172 (327)
+..-|.++|. +-.+.+..+++.+++.|+.+.+|.+.....+.+.++++++|.+.+ +.+.-..++|.
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~------ 111 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKM------ 111 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCC------
Confidence 4467777763 446778899999999999999999986665667777777766544 44444555553
Q ss_pred ccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 173 FRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
+.+.+ .+.++.+.+.|+...|-|
T Consensus 112 ---------~~~~i----l~nl~~l~~~g~~v~iR~ 134 (213)
T PRK10076 112 ---------NLPRV----LENLRLLVSEGVNVIPRL 134 (213)
T ss_pred ---------CHHHH----HHHHHHHHhCCCcEEEEE
Confidence 12333 334566666777655443
No 95
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=10 Score=34.60 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCHHHHHHHHhhhcCCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE----eCCHHH
Q 036840 87 LTPDWIRQFIHHISSASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV----SPNEDE 159 (327)
Q Consensus 87 l~~~~i~~~~~~l~~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv----~~n~~E 159 (327)
+.++.+..........+.|.++|. +-.+.+..+++.+++.|+.+.+|.+.....+...++++..|.+ +...++
T Consensus 69 ~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~ 148 (260)
T COG1180 69 VSPEVLVDKAFYSESGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDE 148 (260)
T ss_pred cCHHHHHHHhhhcCCCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChH
Confidence 456666543333336888888874 3457888999999999999999999866555556666666664 333344
Q ss_pred -HHHHHH
Q 036840 160 -LVAMAN 165 (327)
Q Consensus 160 -~~~l~~ 165 (327)
...+++
T Consensus 149 ~y~~~tg 155 (260)
T COG1180 149 LYRKLTG 155 (260)
T ss_pred HHHHHhC
Confidence 455444
No 96
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.31 E-value=52 Score=29.96 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=42.2
Q ss_pred hhcCCcEEEEecCC-CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCH
Q 036840 98 HISSASVLMVDANL-SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNE 157 (327)
Q Consensus 98 ~l~~~~~v~~~g~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~ 157 (327)
....+|++++.... +++.+..+++.+++.|..+.+|..+.+..+...+ -.+|++..|.
T Consensus 130 ~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~ 188 (260)
T PRK00278 130 RAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINN 188 (260)
T ss_pred HHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECC
Confidence 34589999998754 6678999999999999999999987543222111 1477777664
No 97
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=61.53 E-value=53 Score=28.41 Aligned_cols=37 Identities=5% Similarity=-0.080 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCch
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSV 137 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~ 137 (327)
+.+++++-+...+..+..+.+..++.|.++++++...
T Consensus 92 ~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGl 128 (185)
T PF09314_consen 92 KYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGL 128 (185)
T ss_pred cCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcc
Confidence 3678888776545667778888888899999999874
No 98
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=61.45 E-value=32 Score=30.86 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=38.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
.++++.+..+........+++.+++.|+..-+-.++....+.+..+++.+|.|.+
T Consensus 82 Gad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 82 GADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITV 136 (229)
T ss_pred CCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEE
Confidence 6899888877432345678888999998855555544455677788888887533
No 99
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.42 E-value=79 Score=28.75 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH--HHHHhhcCCCCccCcCCC-ccchHHHHh
Q 036840 112 SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV--AMANALSGENMFRPIDRN-KHSAESLFQ 188 (327)
Q Consensus 112 ~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~--~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 188 (327)
..+.+..+.+.+++.|++++-++-.... +..+.+++|++++.-.+++ .|+.........=.+.+| ..+++++
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~d~~~---v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~-- 138 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIMSERQ---LEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEY-- 138 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCHHH---HHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHH--
Confidence 3467888888999999999999865433 3333446777765544332 122222221111233556 4666665
Q ss_pred cHHHHHHHHHHcCCCEEEEEe-CC
Q 036840 189 TLKPAILVLLEKGIRLVVLTL-GS 211 (327)
Q Consensus 189 ~~~~~~~~l~~~g~~~vvvt~-G~ 211 (327)
..+++.+.+.|.+.+++.. |-
T Consensus 139 --~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 139 --LGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred --HHHHHHHHHcCCCeEEEEcccc
Confidence 5667778878877666664 54
No 100
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=56.29 E-value=45 Score=27.62 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEec-CCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDA-NLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNED 158 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g-~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~ 158 (327)
.++.+.+......+ ...+.|.++| ++-.+.+..+++.+++.|.++.++.+... .+...++++.+|+++...=
T Consensus 45 ~lt~eel~~~I~~~~~~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~-~~~~~~il~~iD~l~~g~y 118 (147)
T TIGR02826 45 KLTPEYLTKTLDKYRSLISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLEP-KDIPLELVQHLDYLKTGRW 118 (147)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHhCCEEEEChH
Confidence 36655554432222 2234566654 64456688889999999999999987532 2345677888999888763
No 101
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=55.71 E-value=44 Score=28.64 Aligned_cols=69 Identities=7% Similarity=0.012 Sum_probs=49.9
Q ss_pred HHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHHHhCCCCEEEecCch--hhhhhhhcccccceEEeCCHHHHH
Q 036840 92 IRQFIHHISSASVLMVDAN-LSPPALAASCKIAAECNIPVWFEPVSV--TKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 92 i~~~~~~l~~~~~v~~~g~-~~~~~~~~l~~~a~~~~~~v~~d~~~~--~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
...+.+.+ .++++-..|. ++.+.+..+.+..+++|+.|+.||... ..+..+.+.++.+-..++...++.
T Consensus 14 ~~~lk~~~-d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 14 QARIKQAF-DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred HHHHHHhc-CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 33344455 4888888885 577878888888888999999999763 234566777787777778777754
No 102
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.77 E-value=40 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=31.0
Q ss_pred hhhcCCcEEEE-ecCCCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 97 HHISSASVLMV-DANLSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 97 ~~l~~~~~v~~-~g~~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
..+.++|+|++ ...++=.....+.+.|++.++|+++--+.
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 46788999765 44566677888888999999999887643
No 103
>PRK09206 pyruvate kinase; Provisional
Probab=53.02 E-value=1.2e+02 Score=30.20 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAEC---NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~~---~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.+++.|...+.-.+ .+.|++.++.--+.+.+..+.++..+. ...++.-.+....-+.+.+++..+|.+.+..-++.
T Consensus 169 ~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLg 248 (470)
T PRK09206 169 ALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLG 248 (470)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhh
Confidence 36677666543223 358999998766667777777777654 35788888776666788888888999998888765
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
.-.+. +++....+++++...+.|...++-|
T Consensus 249 velg~-----------------e~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 249 VEIPV-----------------EEVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred hhcCH-----------------HHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 43321 2333333556666666787777655
No 104
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=52.89 E-value=94 Score=28.50 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=36.8
Q ss_pred cEEEEec-C--CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 103 SVLMVDA-N--LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 103 ~~v~~~g-~--~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
..|.++| + +.++.+..+++.+++.|+.+.++.+.....+.+.++++..|++.+
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~i 182 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLF 182 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEE
Confidence 4566665 2 345666788999999999999998875444556666776776543
No 105
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.52 E-value=99 Score=30.47 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=25.3
Q ss_pred cCCcEEEEecCCCHH----HHHHHHHHHHhCCCCEEEecC
Q 036840 100 SSASVLMVDANLSPP----ALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~----~~~~l~~~a~~~~~~v~~d~~ 135 (327)
.+.++|++.....+. .+..+++.|+++|+++++|-.
T Consensus 146 ~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 146 DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 356777775422222 377888889999999999974
No 106
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=52.26 E-value=1.3e+02 Score=30.12 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=71.5
Q ss_pred CCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhC--CCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHH
Q 036840 87 LTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAEC--NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAM 163 (327)
Q Consensus 87 l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~~--~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l 163 (327)
+++.|...+.-.+ .+.|++.++.-.+.+.+..+.++..+. ...++.-.+....-+.+.+++..+|.+.+..-++..-
T Consensus 172 ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e 251 (480)
T cd00288 172 LSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVE 251 (480)
T ss_pred CCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhh
Confidence 5666665443222 358999998766777787777776654 4567777777666677888888899999988887543
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEe
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTL 209 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 209 (327)
.+. +++....++.++...+.|...++.|+
T Consensus 252 ~g~-----------------~~v~~~qk~ii~~~~~~gkpvi~ATq 280 (480)
T cd00288 252 IPA-----------------EEVFLAQKMLIAKCNLAGKPVITATQ 280 (480)
T ss_pred cCh-----------------HHHHHHHHHHHHHHHHcCCCEEEEch
Confidence 331 33434446666667777877776553
No 107
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=51.48 E-value=31 Score=33.61 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=36.3
Q ss_pred CCHHHHHHHHhhhcC-CcEEEEecCCC----HHHHHHHHHHHHhCCCCEEEecC
Q 036840 87 LTPDWIRQFIHHISS-ASVLMVDANLS----PPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 87 l~~~~i~~~~~~l~~-~~~v~~~g~~~----~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
.+.++++.+.+.++. .++|+++.... ...+..+.+.|+++|++|++|-.
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnT 200 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNT 200 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCC
Confidence 456666666676776 99999975322 24477888999999999999953
No 108
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.86 E-value=1.6e+02 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=36.4
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe-cCchhhhhhhhcccc-cceEEeC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFE-PVSVTKSRRITSVVK-YITVVSP 155 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d-~~~~~~~~~~~~~l~-~~dvv~~ 155 (327)
..++++.+....+.+....+++.+++.|+++.++ ++.....+... .+. .+|++..
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~ 132 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVIL 132 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEE
Confidence 4788988887655566778889999999999876 44322222222 333 5677654
No 109
>PRK13018 cell division protein FtsZ; Provisional
Probab=49.61 E-value=1.3e+02 Score=29.21 Aligned_cols=135 Identities=17% Similarity=0.185 Sum_probs=67.9
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhh
Q 036840 4 VLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESI 83 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~ 83 (327)
-+||.+.|+.-.|...|.+-.-+-.+-.|. +.|.....+.. +++.+...-+ ....+.+..
T Consensus 35 GvGGaG~N~v~~m~~~~~~~v~~iaiNTD~------q~L~~~~a~~k-i~iG~~~t~G-----~GaG~dp~~-------- 94 (378)
T PRK13018 35 GCGGAGNNTINRLYEIGIEGAETIAINTDA------QHLAMIKADKK-ILIGKSLTRG-----LGAGGDPEV-------- 94 (378)
T ss_pred EeCCcHHHHHHHHHHcCCCCceEEEEECCH------HHHhcCCCCcE-EecCCccCCC-----CCCCCChHH--------
Confidence 468999999999998886533333455663 44554444432 2222110000 011111110
Q ss_pred cccCCHHHHHHHHhhhcCCcEEEEecCC---C-HHHHHHHHHHHHhCCCCEEE---ecCchh-------hhhhhhccccc
Q 036840 84 EKFLTPDWIRQFIHHISSASVLMVDANL---S-PPALAASCKIAAECNIPVWF---EPVSVT-------KSRRITSVVKY 149 (327)
Q Consensus 84 ~~~l~~~~i~~~~~~l~~~~~v~~~g~~---~-~~~~~~l~~~a~~~~~~v~~---d~~~~~-------~~~~~~~~l~~ 149 (327)
......+..+.+.+.+..+|+|++...+ + --....+++.+++.+++++- -|-... ....+.++.++
T Consensus 95 G~~aaee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~ 174 (378)
T PRK13018 95 GRKAAEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREA 174 (378)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHh
Confidence 1112334445556778999998774321 1 12345667777887765332 222111 11356667777
Q ss_pred ceEE--eCCHH
Q 036840 150 ITVV--SPNED 158 (327)
Q Consensus 150 ~dvv--~~n~~ 158 (327)
+|.+ +.|+.
T Consensus 175 ~D~vividNd~ 185 (378)
T PRK13018 175 ADTVIVIDNNR 185 (378)
T ss_pred CCEEEEEecHH
Confidence 7764 44443
No 110
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=49.59 E-value=34 Score=31.79 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred ccCCHHHHHHHHhh----hcCCcEEEEecC--------CCHHHHHHHHHHHHhCCCCEEEecCchhh-----hhhhhccc
Q 036840 85 KFLTPDWIRQFIHH----ISSASVLMVDAN--------LSPPALAASCKIAAECNIPVWFEPVSVTK-----SRRITSVV 147 (327)
Q Consensus 85 ~~l~~~~i~~~~~~----l~~~~~v~~~g~--------~~~~~~~~l~~~a~~~~~~v~~d~~~~~~-----~~~~~~~l 147 (327)
..++++++....+. ..+..+|+++.. .+.+.+..+.+.|+++|+++.+|--..+. ...+.++.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~ 183 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA 183 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh
Confidence 56899998875433 234667888641 35678999999999999999999765432 23456666
Q ss_pred ccceEEeCC
Q 036840 148 KYITVVSPN 156 (327)
Q Consensus 148 ~~~dvv~~n 156 (327)
..+|.+.++
T Consensus 184 ~~~D~v~~~ 192 (290)
T PF01212_consen 184 AGADSVSFG 192 (290)
T ss_dssp TTSSEEEEE
T ss_pred hhCCEEEEE
Confidence 777776553
No 111
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=48.62 E-value=40 Score=29.13 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=39.5
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEec-Cchhhhhhhhcccc-cceEEeCC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEP-VSVTKSRRITSVVK-YITVVSPN 156 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~-~~~~~~~~~~~~l~-~~dvv~~n 156 (327)
..+|++.+....+.....++++.+++.|+++..+. +.....+......+ .+|++.++
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 46899888887666567889999999999999885 43222233333444 57887663
No 112
>PRK06739 pyruvate kinase; Validated
Probab=48.21 E-value=1.2e+02 Score=29.19 Aligned_cols=107 Identities=7% Similarity=-0.037 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAEC---NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~~---~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.+++.|...+.-.+ .+.|++.++.-.+.+.+..+.+.+.+. .++|+.-......-+.+.+++..+|-+.+-.=++-
T Consensus 162 ~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLg 241 (352)
T PRK06739 162 AITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLG 241 (352)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccc
Confidence 35666665543334 379999998766777788888888775 46788888776666788889999998877665543
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEe
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTL 209 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 209 (327)
.-++ .+.+...=++.++...+.|...++.|+
T Consensus 242 ve~~-----------------~e~vp~~Qk~Ii~~c~~~gkPvIvATq 272 (352)
T PRK06739 242 VELP-----------------YQFIPLLQKMMIQECNRTNTYVITATQ 272 (352)
T ss_pred cccC-----------------HHHHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 2111 122222224455555666777777774
No 113
>PRK06354 pyruvate kinase; Provisional
Probab=46.76 E-value=1.4e+02 Score=30.67 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHh---CCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAE---CNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV 161 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~---~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~ 161 (327)
.+++.|...+.-.+ .+.|++.++.-.+.+.+.++.++..+ ...+++.-.++...-+.+.+++..+|.+.+..-++.
T Consensus 175 ~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLg 254 (590)
T PRK06354 175 AITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLG 254 (590)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhh
Confidence 36777766543223 57899999876677777777777733 356788888877666788888889999999888865
Q ss_pred HHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 162 AMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
.-.+ .+++....++.++...+.|...++-|
T Consensus 255 ve~g-----------------~e~v~~~qk~ii~~~~~~gkpvI~AT 284 (590)
T PRK06354 255 VEIP-----------------AEEVPLLQKRLIKKANRLGKPVITAT 284 (590)
T ss_pred cccC-----------------cHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4322 13333334666666677787777655
No 114
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=46.57 E-value=1.3e+02 Score=27.35 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCcc-chHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNKH-SAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (327)
.+.+..+.+.+++.|++++.++-.....+.+ .+.+|++++.-.++.. |..........=.+.+|.. +++++
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l---~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~--- 148 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIV---AEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEW--- 148 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHH---HhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHH---
Confidence 5667888889999999999998654333333 3346676554433321 2222222221223355654 66665
Q ss_pred HHHHHHHHHHcCCCEEEEE
Q 036840 190 LKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt 208 (327)
+.+++.+.+.|.+.+++.
T Consensus 149 -~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 149 -LYAAEYILSSGNGNVILC 166 (260)
T ss_pred -HHHHHHHHHcCCCcEEEE
Confidence 566777877777655554
No 115
>PRK06247 pyruvate kinase; Provisional
Probab=46.52 E-value=1.4e+02 Score=29.84 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCHHHHHHHHhhhc-CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHH
Q 036840 87 LTPDWIRQFIHHIS-SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMAN 165 (327)
Q Consensus 87 l~~~~i~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~ 165 (327)
+++.|...+.-.++ +.|++.++.-.+.+.+..+.+.+.+ .+.++.-.+....-+.+.+++..+|.+.+..-++..-.+
T Consensus 171 ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~~-~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g 249 (476)
T PRK06247 171 LTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIGG-RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVP 249 (476)
T ss_pred CCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhhh-cCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccC
Confidence 56666655433333 6899999876677778888777754 567788777766667788888889999888877654322
Q ss_pred hhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEe
Q 036840 166 ALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTL 209 (327)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 209 (327)
. +++....++.++...+.|...++-|+
T Consensus 250 ~-----------------~~v~~~qk~ii~~~~~~gkpvI~ATQ 276 (476)
T PRK06247 250 L-----------------EQVPLIQKRIIRAARRAGKPVVVATQ 276 (476)
T ss_pred H-----------------HHHHHHHHHHHHHHHHhCCCEEEECc
Confidence 1 33333345566666667777666553
No 116
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=45.78 E-value=1.8e+02 Score=25.45 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=35.8
Q ss_pred cEEEEec-C--CCHHHHHHHHHHHHhCCCCEEEecCchhh--hhhhhcccccceEEeCCH
Q 036840 103 SVLMVDA-N--LSPPALAASCKIAAECNIPVWFEPVSVTK--SRRITSVVKYITVVSPNE 157 (327)
Q Consensus 103 ~~v~~~g-~--~~~~~~~~l~~~a~~~~~~v~~d~~~~~~--~~~~~~~l~~~dvv~~n~ 157 (327)
+.|.+.| + +.++.+..+++.+++.++.+.+..+.... .+.+.++++..|.+.++.
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl 126 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDI 126 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeC
Confidence 3455554 3 45666778999999999998888877322 344555666667665543
No 117
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=45.65 E-value=1.4e+02 Score=26.80 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=30.7
Q ss_pred cCCcEEEEecC--CCHHHHHHHHHHHH-hCCCCEEEecCc
Q 036840 100 SSASVLMVDAN--LSPPALAASCKIAA-ECNIPVWFEPVS 136 (327)
Q Consensus 100 ~~~~~v~~~g~--~~~~~~~~l~~~a~-~~~~~v~~d~~~ 136 (327)
...|.+.+.|. +..+.+.++++.++ +.++|+++.|++
T Consensus 40 ~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 40 AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 57999999885 45667888888888 889999999986
No 118
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=44.74 E-value=1.3e+02 Score=28.81 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCc-cchHHHHh
Q 036840 112 SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNK-HSAESLFQ 188 (327)
Q Consensus 112 ~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~ 188 (327)
..+.+..+.+.+++.|++++.++-.....+. +.+.+|++++.-.++.. |+.........=.+.+|. .+++++
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~---l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~-- 241 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVISEIVNPADVEV---ALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEF-- 241 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHH---HHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHH--
Confidence 4577888899999999999999865433233 33346666544433321 222222211122345565 566665
Q ss_pred cHHHHHHHHHHcCCCEEEEE
Q 036840 189 TLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 189 ~~~~~~~~l~~~g~~~vvvt 208 (327)
..+++.+.+.|.+.+++.
T Consensus 242 --~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 242 --IYAAEYIMSQGNGQIILC 259 (360)
T ss_pred --HHHHHHHHHCCCCCEEEE
Confidence 566777777777666666
No 119
>PHA00438 hypothetical protein
Probab=42.37 E-value=20 Score=26.26 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=16.7
Q ss_pred ccccCCCchhHHHHHHHHHH
Q 036840 278 VVRLTGAGDCLVGGTLASIS 297 (327)
Q Consensus 278 vvdttGAGDaF~ag~l~~l~ 297 (327)
...-.|..++|++||+.|+-
T Consensus 43 ~lR~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 43 LLRQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HHHHcCCcHHHHHHHHHHHH
Confidence 34458999999999999984
No 120
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=41.69 E-value=1.9e+02 Score=26.03 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=30.9
Q ss_pred hcCCcEEEEecC--CCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 99 ISSASVLMVDAN--LSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 99 l~~~~~v~~~g~--~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
....|.+++.|. +..+.+..+++..|+..+|+++.|++
T Consensus 30 ~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~ 69 (232)
T PRK04169 30 ESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGN 69 (232)
T ss_pred hcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCC
Confidence 367899999884 46677888888888888999999875
No 121
>PRK05826 pyruvate kinase; Provisional
Probab=41.34 E-value=2.1e+02 Score=28.62 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=68.7
Q ss_pred CCHHHHHHHHhhhc-CCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH
Q 036840 87 LTPDWIRQFIHHIS-SASVLMVDANLSPPALAASCKIAAEC---NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA 162 (327)
Q Consensus 87 l~~~~i~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~a~~~---~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~ 162 (327)
+++.+...+...+. .++.+.++.--+.+.+..+.++..+. .+.++.-.++...-+.+.+++..+|.+.+..-++..
T Consensus 171 lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~ 250 (465)
T PRK05826 171 LTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGV 250 (465)
T ss_pred CChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhh
Confidence 45555544434444 58889888756777788887777654 456777777766667888888889999988877654
Q ss_pred HHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 163 MANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
-++. +++....++.++...+.|...++.|
T Consensus 251 elg~-----------------~~v~~~qk~Ii~~c~~~gKpvi~AT 279 (465)
T PRK05826 251 EIPD-----------------EEVPGLQKKIIRKAREAGKPVITAT 279 (465)
T ss_pred hcCc-----------------HhHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3321 2233333555666666777666654
No 122
>PRK09330 cell division protein FtsZ; Validated
Probab=41.26 E-value=2.6e+02 Score=27.18 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=67.3
Q ss_pred ecCCchHHHHHHHHHcCCC-ceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchh
Q 036840 4 VLGGVARNVAECMSKLGSK-PYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVES 82 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~ 82 (327)
-+||.+.|+.-.|.+.|.+ +.| -.+-.|. +.|.....+.. +++.+. ++.- ....+...
T Consensus 20 GvGG~G~Nav~~m~~~~~~~v~f-ia~NTD~------q~L~~~~a~~k-i~lG~~--~t~G---lGaG~~pe-------- 78 (384)
T PRK09330 20 GVGGGGGNAVNRMIEEGIQGVEF-IAANTDA------QALLKSKAPVK-IQLGEK--LTRG---LGAGANPE-------- 78 (384)
T ss_pred EECCcHHHHHHHHHHcCCCCceE-EEEeCcH------HHHhcCCCCeE-EEcCCc--cccc---CCCCCCHH--------
Confidence 4689999999999988854 444 3444553 34554444433 222221 1000 00111111
Q ss_pred hcccCCHHHHHHHHhhhcCCcEEEEecCC-----CHHHHHHHHHHHHhCCCCEEEe-cCc--hh-------hhhhhhccc
Q 036840 83 IEKFLTPDWIRQFIHHISSASVLMVDANL-----SPPALAASCKIAAECNIPVWFE-PVS--VT-------KSRRITSVV 147 (327)
Q Consensus 83 ~~~~l~~~~i~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~a~~~~~~v~~d-~~~--~~-------~~~~~~~~l 147 (327)
.......+..+.+.+.+..+|++++...+ +. ....+++.+++.+++++.= +.+ .. ....+.++.
T Consensus 79 ~G~~aaee~~e~I~~~l~~~D~vfI~AGmGGGTGTG-aapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~ 157 (384)
T PRK09330 79 VGRKAAEESREEIREALEGADMVFITAGMGGGTGTG-AAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELR 157 (384)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEecCCCcccHH-HHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHH
Confidence 11122344555566788999998775321 22 2335677888888753321 111 11 123466677
Q ss_pred ccceEE--eCCH
Q 036840 148 KYITVV--SPNE 157 (327)
Q Consensus 148 ~~~dvv--~~n~ 157 (327)
+++|.+ +.|+
T Consensus 158 ~~~D~vIvi~Nd 169 (384)
T PRK09330 158 KHVDTLIVIPND 169 (384)
T ss_pred HHCCEEEEEecH
Confidence 777764 4444
No 123
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=41.26 E-value=2e+02 Score=26.04 Aligned_cols=101 Identities=10% Similarity=-0.014 Sum_probs=55.9
Q ss_pred CCHHHHHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC-CHHHHHHHH
Q 036840 87 LTPDWIRQFIHHISSASVLMVDAN-LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP-NEDELVAMA 164 (327)
Q Consensus 87 l~~~~i~~~~~~l~~~~~v~~~g~-~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~-n~~E~~~l~ 164 (327)
++.+.+....+.+.+++-+++-|. .+......+.......|+.+.+.... .........+..-|+++. +..
T Consensus 113 ~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~-~~~~~~~~~~~~~Dv~I~iS~s------ 185 (278)
T PRK11557 113 NSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDM-HALLATVQALSPDDLLLAISYS------ 185 (278)
T ss_pred cCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCCh-HHHHHHHHhCCCCCEEEEEcCC------
Confidence 566777777778888888777663 34445555655566677776653221 111111112334444322 110
Q ss_pred HhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCce
Q 036840 165 NALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGV 214 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~ 214 (327)
| . ..+ +.++++...++|++.+++|.....-
T Consensus 186 --------------g-~-~~~----~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 186 --------------G-E-RRE----LNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred --------------C-C-CHH----HHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 0 0 111 2455677778999999999876543
No 124
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.25 E-value=1.5e+02 Score=26.50 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=40.8
Q ss_pred cCCcEEEEecC--CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEE----eCCHHHHHHHHH
Q 036840 100 SSASVLMVDAN--LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVV----SPNEDELVAMAN 165 (327)
Q Consensus 100 ~~~~~v~~~g~--~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv----~~n~~E~~~l~~ 165 (327)
...|.+++.|. +..+.+..+++..|+..+|+++.|++ ...+.+.+|.+ .+|-+...-+.+
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~------~~~i~~~aDa~l~~svlNs~~~~~iig 91 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSN------PTNVSRDADALFFPSVLNSDDPYWIIG 91 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCC------ccccCcCCCEEEEEEeecCCCchHHHh
Confidence 46899999884 46677888888888888999999875 23344556653 334444444433
No 125
>PRK15452 putative protease; Provisional
Probab=40.90 E-value=1.8e+02 Score=28.88 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=28.9
Q ss_pred cCCcEEEEec----------CCCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 100 SSASVLMVDA----------NLSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 100 ~~~~~v~~~g----------~~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
..+|.||+.+ +.+.+.+.++++.|++.|+.+++-.+.
T Consensus 22 ~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~ 68 (443)
T PRK15452 22 YGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI 68 (443)
T ss_pred CCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4799999954 234567888899999999999888664
No 126
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.55 E-value=1.8e+02 Score=27.65 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEEecCchhhh-hhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHH
Q 036840 109 ANLSPPALAASCKIAAECNIPVWFEPVSVTKS-RRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLF 187 (327)
Q Consensus 109 g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~-~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (327)
|....+.+..+++++|+.|..|.+|....... ..-...+|.+ .-..+.+++..-+-
T Consensus 53 g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a-W~~~~~~~l~~~v~---------------------- 109 (332)
T PF07745_consen 53 GYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA-WANLSFDQLAKAVY---------------------- 109 (332)
T ss_dssp TTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT-CTSSSHHHHHHHHH----------------------
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc-CCCCCHHHHHHHHH----------------------
Confidence 44566788899999999999999998753211 0011111111 11125666553222
Q ss_pred hcHHHHHHHHHHcCCCEEEEEeCCC
Q 036840 188 QTLKPAILVLLEKGIRLVVLTLGSD 212 (327)
Q Consensus 188 ~~~~~~~~~l~~~g~~~vvvt~G~~ 212 (327)
+...+.+..|.+.|+..=+|..|.+
T Consensus 110 ~yT~~vl~~l~~~G~~pd~VQVGNE 134 (332)
T PF07745_consen 110 DYTKDVLQALKAAGVTPDMVQVGNE 134 (332)
T ss_dssp HHHHHHHHHHHHTT--ESEEEESSS
T ss_pred HHHHHHHHHHHHCCCCccEEEeCcc
Confidence 2235667888888999888998876
No 127
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=40.25 E-value=90 Score=25.82 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHhhhcC---CcEEEEec-C--C--CHHHHHHHHHHHHhC-CCCEEEecCchhhhhhh-----hcccccce
Q 036840 86 FLTPDWIRQFIHHISS---ASVLMVDA-N--L--SPPALAASCKIAAEC-NIPVWFEPVSVTKSRRI-----TSVVKYIT 151 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~---~~~v~~~g-~--~--~~~~~~~l~~~a~~~-~~~v~~d~~~~~~~~~~-----~~~l~~~d 151 (327)
.++.+.++.+.+.+.+ ...|.++| + + ..+.+.++++.+++. +...+++.+.....+.+ .++++++|
T Consensus 45 ~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D 124 (154)
T TIGR02491 45 EFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYID 124 (154)
T ss_pred cCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCC
Confidence 4665555554443333 23466665 2 2 226788888888875 56545555443322222 36788888
Q ss_pred EEe
Q 036840 152 VVS 154 (327)
Q Consensus 152 vv~ 154 (327)
+++
T Consensus 125 ~li 127 (154)
T TIGR02491 125 VLV 127 (154)
T ss_pred EEE
Confidence 753
No 128
>PTZ00300 pyruvate kinase; Provisional
Probab=39.70 E-value=2.5e+02 Score=28.01 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred CCHHHHHHHHhhhc-CCcEEEEecCCCHHHHHHHHHHHHhC--CCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHH
Q 036840 87 LTPDWIRQFIHHIS-SASVLMVDANLSPPALAASCKIAAEC--NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAM 163 (327)
Q Consensus 87 l~~~~i~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~a~~~--~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l 163 (327)
+++.+...+...++ .+|++.++.-.+.+.+..+.+.+.+. .+.|+.-.++...-+.+.++++.+|.+.+..-++..-
T Consensus 145 ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgve 224 (454)
T PTZ00300 145 VSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVE 224 (454)
T ss_pred CChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhh
Confidence 45555544433443 68999988766777788888877654 3567777777666678888999999999888776543
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEe
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTL 209 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 209 (327)
.+ .+++....++.++...+.|...++-|+
T Consensus 225 i~-----------------~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ 253 (454)
T PTZ00300 225 IP-----------------AEKVVVAQKILISKCNVAGKPVICATQ 253 (454)
T ss_pred cC-----------------hHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 22 133333345566666667877776563
No 129
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=39.28 E-value=87 Score=23.24 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=30.9
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
.++.+|++..+.++.....+..+|+.+++|+.+..+
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 468889999998999999999999999999965543
No 130
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=38.31 E-value=62 Score=28.83 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
.++++.+..+. .+...+++++.|+.|++.-+-.++-.+-+.+..+++.+|++.+
T Consensus 84 gad~It~H~E~-~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~Vll 137 (220)
T COG0036 84 GADIITFHAEA-TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLL 137 (220)
T ss_pred CCCEEEEEecc-CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 58998887773 3457788888999999855544444455677778888888643
No 131
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.06 E-value=98 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
.+..+++.....+..+..+...|.++++|+.+-++.
T Consensus 29 ~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 29 QVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 477899988888888999999999999999887653
No 132
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=37.55 E-value=1e+02 Score=26.90 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCc
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNK 180 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~ 180 (327)
.++++.+..+.. +...++++..++.|+.+-+-.++.+..+.+..+++.+|.|.+---+. | .. |.
T Consensus 80 g~~~i~~H~E~~-~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~P----G-~~----------Gq 143 (201)
T PF00834_consen 80 GADYITFHAEAT-EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEP----G-FG----------GQ 143 (201)
T ss_dssp T-SEEEEEGGGT-TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-T----T-TS----------SB
T ss_pred CCCEEEEcccch-hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecC----C-CC----------cc
Confidence 578888877643 34567788888999886555554445567788888888854322221 1 01 11
Q ss_pred cchHHHHhcHHHHHHHHHHcCCCEEEEEeCC
Q 036840 181 HSAESLFQTLKPAILVLLEKGIRLVVLTLGS 211 (327)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~ 211 (327)
.=.+..++.++++.+...+.|....|...|.
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG 174 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIEVDGG 174 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 1112333444555555555566666666663
No 133
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=36.95 E-value=26 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.2
Q ss_pred ccccCCCchhHHHHHHHHHHc
Q 036840 278 VVRLTGAGDCLVGGTLASISS 298 (327)
Q Consensus 278 vvdttGAGDaF~ag~l~~l~~ 298 (327)
-....|+.++|++||+.|+..
T Consensus 43 ~lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 43 ALRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHHccccHHHHHHHHHHHHH
Confidence 345579999999999999853
No 134
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.59 E-value=99 Score=28.73 Aligned_cols=70 Identities=6% Similarity=0.098 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCC
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPN 156 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n 156 (327)
.++.++--.+.+.+...++.+++..++++....+.++++..++||..|=+ ......+.++++ .+|++.+.
T Consensus 187 ~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~-~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 187 GWTPEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADES-CFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCC-CCCHHHHHHHHhcCCCCEEEEe
Confidence 34444444444556666777777655544445555566667788887732 222233444444 46666553
No 135
>PLN02623 pyruvate kinase
Probab=35.61 E-value=3.2e+02 Score=28.10 Aligned_cols=106 Identities=14% Similarity=0.048 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhCC--CCEEEecCchhhhhhhhcccccceEEeCCHHHHHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAECN--IPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA 162 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~~~--~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~ 162 (327)
.+++.|...+.-.+ .+.|++.++.--+.+.+.++.++.++.+ +.++.-.++...-+.+.+++..+|.+.+..-++..
T Consensus 275 ~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgv 354 (581)
T PLN02623 275 SITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA 354 (581)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhh
Confidence 36666665543223 3689999987667777888887776654 56777777766667888889999999988888754
Q ss_pred HHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 163 MANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
-.+. +++....++.++...+.|...++.|
T Consensus 355 elg~-----------------~~v~~~qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 355 ELPI-----------------EEVPLLQEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred hcCc-----------------HHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 3332 2333334555666666677666555
No 136
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.23 E-value=97 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEec
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
.++.++++..+.++.....+...|+..++|+..-.
T Consensus 26 gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 26 GSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 46888999998888889999999999999986655
No 137
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=34.99 E-value=3.2e+02 Score=26.06 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=66.5
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhh
Q 036840 4 VLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESI 83 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~ 83 (327)
-+||.+.|+.-.|.+.+.+-.-.-.+-.|. +.|.....+.. +++.+. .|. . ....+... .
T Consensus 24 GvGg~G~n~v~~l~~~~~~~~~~iainTD~------~~L~~~~a~~k-i~iG~~-~t~-G---~GaG~~~~--------~ 83 (349)
T TIGR00065 24 GVGGGGNNTVNRMLEEGVEGVEFIAINTDA------QHLKTTKADKK-ILIGKK-LTR-G---LGAGGNPE--------I 83 (349)
T ss_pred EeCCcHHHHHHHHHHcCCCceEEEEEECCH------HHHhcCCCCeE-EEcCCC-CCC-C---CCCCCCHH--------H
Confidence 468999999999998886543344455563 34554444332 222111 111 0 01111111 0
Q ss_pred cccCCHHHHHHHHhhhcCCcEEEEecCC-----CHHHHHHHHHHHHhCCCCEEEe-cCc--h-------hhhhhhhcccc
Q 036840 84 EKFLTPDWIRQFIHHISSASVLMVDANL-----SPPALAASCKIAAECNIPVWFE-PVS--V-------TKSRRITSVVK 148 (327)
Q Consensus 84 ~~~l~~~~i~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~a~~~~~~v~~d-~~~--~-------~~~~~~~~~l~ 148 (327)
.....++..+.+.+.+.++|++++-..+ +. ....+++.+++.+++++.= +.+ . .....+.++.+
T Consensus 84 G~~~aee~~d~Ir~~le~~D~vfI~aglGGGTGSG-~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~ 162 (349)
T TIGR00065 84 GRKAAEESRDEIRKLLEGADMVFITAGMGGGTGTG-AAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQ 162 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEeccCccchh-HHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHH
Confidence 1122344455556778899997774211 22 2446667777877653322 211 1 11134566667
Q ss_pred cceEE--eCCH
Q 036840 149 YITVV--SPNE 157 (327)
Q Consensus 149 ~~dvv--~~n~ 157 (327)
++|.+ +.|+
T Consensus 163 ~~D~vividNd 173 (349)
T TIGR00065 163 AVDTLIVIPND 173 (349)
T ss_pred hCCEEEEEeCH
Confidence 77764 4444
No 138
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=34.94 E-value=1.2e+02 Score=27.14 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=29.8
Q ss_pred CCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 87 LTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 87 l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
++.+.+. +.++++|+++.... +.+....+-+.|.+.++|++.-
T Consensus 103 i~~~~~~---~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 103 LDDAELA---ALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred CCHHHHH---HHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 4444443 46788998776543 4566777788899999998874
No 139
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.21 E-value=1.9e+02 Score=26.12 Aligned_cols=70 Identities=10% Similarity=0.176 Sum_probs=44.1
Q ss_pred cccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCC
Q 036840 84 EKFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPN 156 (327)
Q Consensus 84 ~~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n 156 (327)
+..++.++-..+.+.+...++.+++.+++++....+.++. ..+||..|=+-. ....+.+++. .+|++.+-
T Consensus 135 N~~w~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs~~-~~~~~~~~~~~~~~d~v~~k 206 (263)
T cd03320 135 NGGWSLEEALAFLEALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDESLR-RLDDPLALAAAGALGALVLK 206 (263)
T ss_pred CCCCCHHHHHHHHHhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCccc-cccCHHHHHhcCCCCEEEEC
Confidence 3446666655566677888899999888776666665554 678999984421 1223444444 57776553
No 140
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.00 E-value=81 Score=22.53 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=32.0
Q ss_pred cCCchH--HHHHHHHHcCCCceEEEeecC------CcchHHHHHHHHhcCCCcc
Q 036840 5 LGGVAR--NVAECMSKLGSKPYMISALGL------DMAGNILLEHWKSAGLSTE 50 (327)
Q Consensus 5 ~GG~~~--N~a~~la~LG~~v~~i~~vG~------D~~g~~i~~~l~~~gV~~~ 50 (327)
+||... =.|..|+.+|.+++++..-.. ....+.+.+.|++.||+..
T Consensus 5 iGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 5 IGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp ESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred ECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 455333 348888999999998875432 2356677888888888754
No 141
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=33.97 E-value=1.3e+02 Score=27.07 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=40.6
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeC
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSP 155 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~ 155 (327)
..++.++.-.+.+.+...++.+++..++.+....+.++.+..++||..|=+- .....+.+++. .+|++.+
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~-~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESA-FTPHDAFRELALGAADAVNI 209 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCC-CCHHHHHHHHHhCCCCEEEE
Confidence 3455555555556667777777776665555556666667778898887432 11223333332 4666544
No 142
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=33.79 E-value=51 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=25.3
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHhCCCCEEEec
Q 036840 102 ASVLMVDANLSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 102 ~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
+--++.+| -++....+++.|+++++|+.-|+
T Consensus 22 AP~vvA~G--~G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 22 APKVVASG--KGEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred CCEEEeec--chHHHHHHHHHHHHcCCCcccCH
Confidence 44556666 46888999999999999999887
No 143
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=33.52 E-value=4.3e+02 Score=25.19 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCHHHHHHHHhhhcCCcEEEE-ecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHH
Q 036840 87 LTPDWIRQFIHHISSASVLMV-DANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMAN 165 (327)
Q Consensus 87 l~~~~i~~~~~~l~~~~~v~~-~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~ 165 (327)
++++... +.+.+..+.++ .+... ....++....++.|++.+|+.-..- ..-.-...-++.+...++.
T Consensus 135 ~~~e~~~---~~l~~~g~~FlfAp~~h-p~~k~v~~vR~~LG~RTifN~LGPL----~NPa~~~~qliGV~~p~~~---- 202 (338)
T COG0547 135 LSPEQAA---RALEETGIGFLFAPAYH-PAMKHVAPVRKELGVRTIFNLLGPL----LNPARAKLQLIGVYHPELV---- 202 (338)
T ss_pred CCHHHHH---HHHHhcCeEEEEccccC-HHHHHHHHHHHHcCCCchHHhhccc----cCCCCCCceEEEEeCHHHH----
Confidence 3454444 35566666444 44444 4578888888999999999864311 1111123345555555543
Q ss_pred hhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceE
Q 036840 166 ALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVL 215 (327)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 215 (327)
+..++.+...|.+..+|-+|.+|.-
T Consensus 203 -------------------------~~~A~~l~~LG~~ralvV~G~~GlD 227 (338)
T COG0547 203 -------------------------ELLAEALRLLGVERALVVHGLEGLD 227 (338)
T ss_pred -------------------------HHHHHHHHHhCcceEEEEECCCCcc
Confidence 2334566778988889999987753
No 144
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=33.36 E-value=1e+02 Score=29.35 Aligned_cols=50 Identities=8% Similarity=0.195 Sum_probs=30.0
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEec
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
..++.+....+.+.+...++.+++..++.+....+.++.++.+++|..|=
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE 246 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADE 246 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCc
Confidence 33455544444455666677777766655555555556666677777763
No 145
>PRK14725 pyruvate kinase; Provisional
Probab=33.35 E-value=2.3e+02 Score=29.35 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEecCchhhhhhhhcccccc-----eEEeCCH
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAEC---NIPVWFEPVSVTKSRRITSVVKYI-----TVVSPNE 157 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~---~~~v~~d~~~~~~~~~~~~~l~~~-----dvv~~n~ 157 (327)
.+++.|+..+.-.++..|+|.++.--+.+.+..+.+...+. ++.|+.-.+....-+.+.+++..+ |-|.+-.
T Consensus 429 ~LTekD~~dl~f~~~~vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIAR 508 (608)
T PRK14725 429 ALTDKDLEDLAFVAKHADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIAR 508 (608)
T ss_pred CCCHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEEC
Confidence 36777777654455669999998766777788887777664 467888887765556666666554 7766655
Q ss_pred HHH
Q 036840 158 DEL 160 (327)
Q Consensus 158 ~E~ 160 (327)
=++
T Consensus 509 GDL 511 (608)
T PRK14725 509 GDL 511 (608)
T ss_pred Ccc
Confidence 443
No 146
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=33.22 E-value=2.9e+02 Score=24.75 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCC--CEEEecCchhhhhhhhcccccceEEe
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNI--PVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~--~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
.+|++.+..+.+. ...++++..++.|. ..-+-.++....+.+..+++.+|.|.
T Consensus 91 Gad~It~H~Ea~~-~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VL 145 (228)
T PRK08091 91 GADIVTLQVEQTH-DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQ 145 (228)
T ss_pred CCCEEEEcccCcc-cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEE
Confidence 6899888877543 35677788888887 64444443334456777788888753
No 147
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=32.53 E-value=33 Score=29.57 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=38.7
Q ss_pred EEEecCchhhhhhhhcccccceEEeCCHH--HHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEE
Q 036840 130 VWFEPVSVTKSRRITSVVKYITVVSPNED--ELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVL 207 (327)
Q Consensus 130 v~~d~~~~~~~~~~~~~l~~~dvv~~n~~--E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvv 207 (327)
|.+|+.+...++.+.++++.+|||+-|.. .++.+ +. + .+.|.+.++++|.+
T Consensus 1 V~lDl~~~~gr~~l~~L~~~ADV~i~n~rpg~~~~l-Gl---------------~-----------~~~l~~~nP~LV~~ 53 (191)
T PF02515_consen 1 VALDLKSPEGRAALRRLLATADVVIENFRPGVLERL-GL---------------D-----------YEALRAINPRLVYC 53 (191)
T ss_dssp EEEETTSHHHHHHHHHHHHT-SEEEEESSTTHHHHT-T----------------S-----------HHHHHHH-TT-EEE
T ss_pred CEeeCcCHHHHHHHHHHHHhCCEEEECCchhhhHhc-CC---------------C-----------HHHHHhhCCCCeEE
Confidence 57888888888899999999999998877 22221 11 1 24566778999999
Q ss_pred EeCCCce
Q 036840 208 TLGSDGV 214 (327)
Q Consensus 208 t~G~~G~ 214 (327)
+....|-
T Consensus 54 ~isgfG~ 60 (191)
T PF02515_consen 54 SISGFGQ 60 (191)
T ss_dssp EEESS-S
T ss_pred EEEeecC
Confidence 8766554
No 148
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=32.26 E-value=3.1e+02 Score=25.10 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHhhhcCCcEEE-EecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC-CHHHHHHH
Q 036840 86 FLTPDWIRQFIHHISSASVLM-VDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP-NEDELVAM 163 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~-~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~-n~~E~~~l 163 (327)
.++++.++...+.|.+++-++ +....+......+.....+.|.++.+-...-... .....+..-|+++. +..-
T Consensus 114 ~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~-~~~~~~~~~Dv~i~iS~sG---- 188 (281)
T COG1737 114 LLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL-MQLALLTPGDVVIAISFSG---- 188 (281)
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH-HHHHhCCCCCEEEEEeCCC----
Confidence 467888888778888888544 4445566667777777777787766644321111 12333445555432 1110
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCC
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSD 212 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~ 212 (327)
...+ +.++++...+.|++.|.+|.-..
T Consensus 189 ------------------~t~e----~i~~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 189 ------------------YTRE----IVEAAELAKERGAKVIAITDSAD 215 (281)
T ss_pred ------------------CcHH----HHHHHHHHHHCCCcEEEEcCCCC
Confidence 0111 23455677778999999997543
No 149
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=31.64 E-value=2.6e+02 Score=24.73 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=38.4
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
..+|++.+..+.+. ...++++..|+.|+...+-.++....+.+..+++.+|.|.+
T Consensus 80 ~gad~i~~H~Ea~~-~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 80 AGASMITFHVEASE-HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILL 134 (220)
T ss_pred hCCCEEEEcccCcc-cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEE
Confidence 36899888877543 36678888899998866555544455667777888887543
No 150
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=31.33 E-value=65 Score=28.67 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhccc--ccceEEe
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVV--KYITVVS 154 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l--~~~dvv~ 154 (327)
.+|++.+..+.+...+...++.+++.|..+.+..++.+..+.+..++ +.+|.|.
T Consensus 88 Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl 143 (228)
T PTZ00170 88 GASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVL 143 (228)
T ss_pred CCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHH
Confidence 68888888775555577888888999988888777655556666666 5566643
No 151
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.28 E-value=3.1e+02 Score=26.27 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCcc-chHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNKH-SAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (327)
.+.+..+.+.+++.|++++-++-.... +..+.+++|++++.-.+++. |+.......-.=.+.+|.. +.+++
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~---v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~--- 224 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAAD---LEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEW--- 224 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHH---HHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHH---
Confidence 466777777788899999999865433 33334457887665544422 2222222111123455665 77665
Q ss_pred HHHHHHHHHHcCCCEEEEE
Q 036840 190 LKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt 208 (327)
..+++.+++.|.+.+++.
T Consensus 225 -~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 225 -LMAAEYILAAGNPNVILC 242 (352)
T ss_pred -HHHHHHHHHcCCCeEEEE
Confidence 556677777776544444
No 152
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=30.68 E-value=3.5e+02 Score=24.82 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH--HHHHhhcCCCCccCcCCCc-cchHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV--AMANALSGENMFRPIDRNK-HSAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~--~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (327)
.+-+..+.+..++.|.+|+-|.... ..+..+.+++|++.+...-++ .|+.........=.+.+|. .+++++
T Consensus 67 eeGL~~L~~vk~~~GlpvvTeV~~~---~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~--- 140 (264)
T PRK05198 67 EEGLKILQEVKETFGVPVLTDVHEP---EQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDM--- 140 (264)
T ss_pred HHHHHHHHHHHHHHCCceEEEeCCH---HHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHH---
Confidence 3566667777778999999998753 345556678899866552221 1222222211111334454 456655
Q ss_pred HHHHHHHHHHcCCCEEEEE
Q 036840 190 LKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt 208 (327)
.-+++++++.|.+.|+++
T Consensus 141 -~~aaeyi~~~Gn~~vilc 158 (264)
T PRK05198 141 -KNVVDKVREAGNDKIILC 158 (264)
T ss_pred -HHHHHHHHHcCCCeEEEE
Confidence 455677777777777776
No 153
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=30.33 E-value=27 Score=30.63 Aligned_cols=93 Identities=11% Similarity=0.185 Sum_probs=55.7
Q ss_pred hhhcCCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEecCchhh------hhhhhccc-ccceEEeCCHHHHHHHHHh
Q 036840 97 HHISSASVLMVDAN---LSPPALAASCKIAAECNIPVWFEPVSVTK------SRRITSVV-KYITVVSPNEDELVAMANA 166 (327)
Q Consensus 97 ~~l~~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d~~~~~~------~~~~~~~l-~~~dvv~~n~~E~~~l~~~ 166 (327)
+++.++++|.|+-. +..+.+..++++|... +-...+- .-.+++.| .+..++.++....+.....
T Consensus 11 ~~~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~------~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~ 84 (227)
T KOG1615|consen 11 KLWRSADAVCFDVDSTVIQEEGIDELAAYCGVG------EAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIK 84 (227)
T ss_pred HHHHhcCeEEEecCcchhHHhhHHHHHHHhCch------HHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhc
Confidence 56788999999864 3455566666654321 1111110 12234433 3677888998887765432
Q ss_pred hcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeC
Q 036840 167 LSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLG 210 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G 210 (327)
- +-.+..-+++.+..|...|.+..+++-|
T Consensus 85 ~---------------k~~lT~Gi~eLv~~L~~~~~~v~liSGG 113 (227)
T KOG1615|consen 85 Q---------------KPTLTPGIRELVSRLHARGTQVYLISGG 113 (227)
T ss_pred C---------------CCccCCCHHHHHHHHHHcCCeEEEEcCC
Confidence 0 1111123578889999999998888876
No 154
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.17 E-value=3.8e+02 Score=23.54 Aligned_cols=36 Identities=6% Similarity=-0.037 Sum_probs=26.3
Q ss_pred hhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 97 HHISSASVLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 97 ~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
+.++++|+++.... +.+....+-+.|.+.++|++.-
T Consensus 107 ~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 107 ELIAGYDLVLDCTD-NFATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHhCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 45678999887644 4466677888889999987663
No 155
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.02 E-value=1.3e+02 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=28.9
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
.++.+|++....++.....+...|+.+++|++.-
T Consensus 31 gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 31 GKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4578899998889999999999999999997543
No 156
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.98 E-value=2.5e+02 Score=25.65 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCcc-chHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNKH-SAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (327)
.+.+..+.+.+++.|++++-++-.....+.+. +.+|++++.-.+++. +..........=.+.+|.. +.+++
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~---~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~--- 150 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA---DYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEW--- 150 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH---HhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHH---
Confidence 56678888889999999999886544333333 335666554443322 2222222221123355554 66655
Q ss_pred HHHHHHHHHHcCCC-EEEEEeC
Q 036840 190 LKPAILVLLEKGIR-LVVLTLG 210 (327)
Q Consensus 190 ~~~~~~~l~~~g~~-~vvvt~G 210 (327)
..+++.+.+.|.+ .+++-+|
T Consensus 151 -~~A~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 151 -LYAAEYIMSEGNENVVLCERG 171 (266)
T ss_pred -HHHHHHHHhcCCCeEEEEECC
Confidence 4556667766664 4444444
No 157
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.93 E-value=2e+02 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.9
Q ss_pred CCcEEEEecC--CCHHHHHHHHHHHHh-CCCCEEEecCc
Q 036840 101 SASVLMVDAN--LSPPALAASCKIAAE-CNIPVWFEPVS 136 (327)
Q Consensus 101 ~~~~v~~~g~--~~~~~~~~l~~~a~~-~~~~v~~d~~~ 136 (327)
.+|.+.+.|. +..+.+..+++.+|+ .++|+++.|++
T Consensus 24 gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 24 GTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred CCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 4799999875 467778888888887 67999998875
No 158
>PRK15482 transcriptional regulator MurR; Provisional
Probab=29.79 E-value=3.4e+02 Score=24.62 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC-CHHHHHHH
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDAN-LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP-NEDELVAM 163 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~-~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~-n~~E~~~l 163 (327)
.++.+.++...+.+.+++-+++-|. .+......+.......|..+.+..... ........+..-|+++. +..
T Consensus 119 ~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~-~~~~~~~~~~~~Dv~i~iS~s----- 192 (285)
T PRK15482 119 LFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTH-VQATVSQALKKGDVQIAISYS----- 192 (285)
T ss_pred hcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHh-HHHHHHhcCCCCCEEEEEeCC-----
Confidence 3567777777778888887777653 334444455555556677666533211 01111223344455332 111
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceE
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVL 215 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 215 (327)
| .+ .+ +.++++...+.|++.|.+|.....-+
T Consensus 193 ---------------g-~t-~~----~~~~~~~a~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 193 ---------------G-SK-KE----IVLCAEAARKQGATVIAITSLADSPL 223 (285)
T ss_pred ---------------C-CC-HH----HHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 0 01 11 24556777788999999998766543
No 159
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.69 E-value=3.6e+02 Score=25.59 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhccccc-ceEEeCCHHHHHH--HHHhhcCCCCccCcCCCccchHHH
Q 036840 110 NLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKY-ITVVSPNEDELVA--MANALSGENMFRPIDRNKHSAESL 186 (327)
Q Consensus 110 ~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~-~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~~~~~~ 186 (327)
+++.+....+.+.|++.|+.++..|-.....+.+. ++ ++++++.-.|+.. |+.......-.=.+.+|..+.+++
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~---~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei 148 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESADFLE---DLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEI 148 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH---hcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHH
Confidence 45778899999999999999988875432222222 33 5555443333211 111111111112346677666665
Q ss_pred HhcHHHHHHHHHHcCCC---EEEEE
Q 036840 187 FQTLKPAILVLLEKGIR---LVVLT 208 (327)
Q Consensus 187 ~~~~~~~~~~l~~~g~~---~vvvt 208 (327)
+.+.+.+.+.|.+ .+++.
T Consensus 149 ----~~Av~~i~~~G~~~~~i~llh 169 (329)
T TIGR03569 149 ----EAAVGVLRDAGTPDSNITLLH 169 (329)
T ss_pred ----HHHHHHHHHcCCCcCcEEEEE
Confidence 6667777777764 55544
No 160
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=29.65 E-value=2.8e+02 Score=25.26 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=42.7
Q ss_pred CHHHHHHHHhhhcCCcEEEEe-cCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc-cceEEeCCHHH
Q 036840 88 TPDWIRQFIHHISSASVLMVD-ANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK-YITVVSPNEDE 159 (327)
Q Consensus 88 ~~~~i~~~~~~l~~~~~v~~~-g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~-~~dvv~~n~~E 159 (327)
++-.+.. .....+|.+.+- .-++++.+..+++.|++.|.-+.++..+... +...+. .++++.+|..+
T Consensus 120 d~~QI~e--A~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~E---l~~al~~~a~iiGINnRd 188 (254)
T PF00218_consen 120 DPYQIYE--ARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEE---LERALEAGADIIGINNRD 188 (254)
T ss_dssp SHHHHHH--HHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHH---HHHHHHTT-SEEEEESBC
T ss_pred CHHHHHH--HHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHH---HHHHHHcCCCEEEEeCcc
Confidence 4444432 456688886664 4567788899999999999999999986432 222222 46677666643
No 161
>PRK06683 hypothetical protein; Provisional
Probab=29.51 E-value=1.4e+02 Score=22.08 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=30.2
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEec
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
.++.++++..+.++.....+...|+..++|+..-.
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 46888999988898989999999999999986655
No 162
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=29.43 E-value=96 Score=30.07 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCcEEEEecC----CCHHHHHHHHHHHHhCC-CCEEEecC
Q 036840 101 SASVLMVDAN----LSPPALAASCKIAAECN-IPVWFEPV 135 (327)
Q Consensus 101 ~~~~v~~~g~----~~~~~~~~l~~~a~~~~-~~v~~d~~ 135 (327)
+.++|+++.. +....+..+++.|+++| +++++|-.
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECT
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecc
Confidence 6888888753 22345788899999998 99999964
No 163
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=29.05 E-value=2.5e+02 Score=26.81 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhC--CCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH
Q 036840 86 FLTPDWIRQFIHHI-SSASVLMVDANLSPPALAASCKIAAEC--NIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA 162 (327)
Q Consensus 86 ~l~~~~i~~~~~~l-~~~~~v~~~g~~~~~~~~~l~~~a~~~--~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~ 162 (327)
.+++.|...+.-.+ .+.|++.++.-.+.+.+..+.+...+. +++|+.-.++...-+.+.+++..+|-+.+-.-++..
T Consensus 173 ~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~ 252 (348)
T PF00224_consen 173 ALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGV 252 (348)
T ss_dssp SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcce
Confidence 36667766543333 368999998766778888888887775 456777777766667889999999999998888654
No 164
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=29.01 E-value=1.5e+02 Score=22.49 Aligned_cols=44 Identities=14% Similarity=-0.000 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEe
Q 036840 35 GNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVA 78 (327)
Q Consensus 35 g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~ 78 (327)
=+.+.+.|++.|+.+...........+..+.+.|++|.+...+.
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEE
Confidence 45678889999997652211112234567778999998876654
No 165
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.90 E-value=4e+02 Score=24.80 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCc-cchHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNK-HSAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (327)
.+-+..+.+..++.|.||+-|.... +.+..+.+++|++.+...-++. |+.........=.+.+|. .+++++
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~~~---~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~--- 146 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVHES---SQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVM--- 146 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeCCH---HHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHH---
Confidence 4556666666778999999998753 3455566778998665543322 221112111112334444 556655
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCce
Q 036840 190 LKPAILVLLEKGIRLVVLTLGSDGV 214 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt~G~~G~ 214 (327)
..+++++...|.+.|+++ ++|.
T Consensus 147 -~~aaeki~~~GN~~viLc--ERG~ 168 (290)
T PLN03033 147 -RNSAEKVRLAGNPNVMVC--ERGT 168 (290)
T ss_pred -HHHHHHHHHcCCCcEEEE--eCCC
Confidence 455677888887777777 4454
No 166
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=28.68 E-value=2.4e+02 Score=26.05 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHH--HHhhcCCCCccCcCCCc-cchHHHHh
Q 036840 112 SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAM--ANALSGENMFRPIDRNK-HSAESLFQ 188 (327)
Q Consensus 112 ~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l--~~~~~~~~~~~~~~~~~-~~~~~~~~ 188 (327)
..+.+..+.+.+.+.|.+|+-+.-.. +.+..+..++|++-+...-++.+ +...+...-.=-+.+|. .+.+++
T Consensus 94 ge~gL~~l~~a~~~~Gl~vvtEvm~~---~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEw-- 168 (286)
T COG2876 94 GEEGLKLLKRAADETGLPVVTEVMDV---RDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEW-- 168 (286)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEecCH---HHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHH--
Confidence 44667777777888999998886542 34566777888887665554432 12111111111224455 455554
Q ss_pred cHHHHHHHHHHcCCCEEEEEeCCCceEEEEe
Q 036840 189 TLKPAILVLLEKGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 189 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 219 (327)
..+++.++..|...||+ .++|+.-+.+
T Consensus 169 --L~AAEYI~s~GN~~vIL--CERGIRtfe~ 195 (286)
T COG2876 169 --LNAAEYILSHGNGNVIL--CERGIRTFEK 195 (286)
T ss_pred --HHHHHHHHhCCCCcEEE--Eecccccccc
Confidence 45567777776544443 2445444433
No 167
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=28.66 E-value=3.9e+02 Score=24.41 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH--HHHHhhcCCCCccCcCCCc-cchHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV--AMANALSGENMFRPIDRNK-HSAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~--~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (327)
.+-+..+.+..++.|.+|+-|..... .+..+.+++|++.+...-++ .|+.........=.+.+|. .+++++
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~---~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~--- 132 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESS---QCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDM--- 132 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHH---HHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHH---
Confidence 35666777777789999999987533 45556677999866552221 1222222222122334454 455554
Q ss_pred HHHHHHHHHHcCCCEEEEE
Q 036840 190 LKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt 208 (327)
.-+++++.+.|.+.|+++
T Consensus 133 -l~aaeyi~~~Gn~~viLc 150 (258)
T TIGR01362 133 -KNVVEKVLSTGNKNILLC 150 (258)
T ss_pred -HHHHHHHHHcCCCcEEEE
Confidence 455677777777766666
No 168
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.56 E-value=3.7e+02 Score=25.47 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCccchHHHH
Q 036840 110 NLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNKHSAESLF 187 (327)
Q Consensus 110 ~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (327)
+++.+...++.+.|++.|+.++.++-.....+.+.++ .++++++.-.++.. |+.......-.=.+.+|..+.+++
T Consensus 73 el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~--~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei- 149 (327)
T TIGR03586 73 HTPWEWHKELFERAKELGLTIFSSPFDETAVDFLESL--DVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEI- 149 (327)
T ss_pred hCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc--CCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHH-
Confidence 3577888899999999999998887543322222222 14555443322111 111111111111345677666655
Q ss_pred hcHHHHHHHHHHcCCCEEEEEe
Q 036840 188 QTLKPAILVLLEKGIRLVVLTL 209 (327)
Q Consensus 188 ~~~~~~~~~l~~~g~~~vvvt~ 209 (327)
+.+.+.+.+.|.+.+++-+
T Consensus 150 ---~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 150 ---QEAVEACREAGCKDLVLLK 168 (327)
T ss_pred ---HHHHHHHHHCCCCcEEEEe
Confidence 6667777777775444443
No 169
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=28.31 E-value=1.2e+02 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhh
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKS 140 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~ 140 (327)
..+|++.+.+--+.++....++.|++.|+.+.+|+-..|..
T Consensus 79 aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~ 119 (217)
T COG0269 79 AGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDP 119 (217)
T ss_pred cCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCH
Confidence 67999999998888999999999999999999998765533
No 170
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=27.80 E-value=3.1e+02 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=28.8
Q ss_pred cCCcEEEEecCCCH-HHHHHHHHHHHhCCCCEEEecCc
Q 036840 100 SSASVLMVDANLSP-PALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 100 ~~~~~v~~~g~~~~-~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
..+.+|++..+.++ +....+...|+..++|+.+-.+.
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk 78 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK 78 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH
Confidence 35788999888866 46788999999999997665543
No 171
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.66 E-value=3.9e+02 Score=22.89 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=60.3
Q ss_pred cchHHHHHHHHhcCCCccCeeec----CCCCceEEEEEecCCCCEEE-EEecchhh--c------ccCCHHHHHHHHhhh
Q 036840 33 MAGNILLEHWKSAGLSTEGIRRQ----KDIDTAVVSNILDVNGELAA-AVASVESI--E------KFLTPDWIRQFIHHI 99 (327)
Q Consensus 33 ~~g~~i~~~l~~~gV~~~~i~~~----~~~~t~~~~~~~d~~g~~~~-~~~~~~~~--~------~~l~~~~i~~~~~~l 99 (327)
..-..+.+.|++.|...-++... .+..+++.++-++. |+... .....+.. . ..+..-.++.+...+
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t-g~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~ 98 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT-GEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRAL 98 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC-CceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHh
Confidence 44456777888887666554432 23445544444442 44432 22211100 0 011222334455677
Q ss_pred cCCcEEEEec----CC-CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe
Q 036840 100 SSASVLMVDA----NL-SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 100 ~~~~~v~~~g----~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
..+|++++|- ++ +.. ....++..-+.+.|+++..........++++-+.-.+++
T Consensus 99 ~~aDvIIIDEIGpMElks~~-f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKK-FREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred hcCCEEEEecccchhhccHH-HHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEE
Confidence 7899999984 12 333 445555555677788887764333334444444444433
No 172
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=27.58 E-value=2.1e+02 Score=25.06 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecC
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
..++.++...+.+.+...++.+++.+++.+......++.+..++||..|=+
T Consensus 103 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 153 (229)
T cd00308 103 GAWTPKEAIRLIRALEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADES 153 (229)
T ss_pred CCCCHHHHHHHHHHhhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCC
Confidence 345666555555667778888998877765566666677778899999754
No 173
>COG1159 Era GTPase [General function prediction only]
Probab=27.39 E-value=5.2e+02 Score=24.19 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCceEEEeecCCcchHH-HHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEE-EEecchhhccc---CCHHHHHH
Q 036840 20 GSKPYMISALGLDMAGNI-LLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAA-AVASVESIEKF---LTPDWIRQ 94 (327)
Q Consensus 20 G~~v~~i~~vG~D~~g~~-i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~-~~~~~~~~~~~---l~~~~i~~ 94 (327)
+.++.|++.+|.=+.|+. +.+.+-...|.+..-. -..|...+.-+-..++..+ ++..+ +.-.+ +..-....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k---~QTTR~~I~GI~t~~~~QiIfvDTP-Gih~pk~~l~~~m~~~ 78 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK---PQTTRNRIRGIVTTDNAQIIFVDTP-GIHKPKHALGELMNKA 78 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC---cchhhhheeEEEEcCCceEEEEeCC-CCCCcchHHHHHHHHH
Confidence 457899999999999987 6677766666543211 1122222221212223333 44443 32211 12222233
Q ss_pred HHhhhcCCcEEEE--ecCC-CHHHHHHHHHHHHhCCCCEEEecC
Q 036840 95 FIHHISSASVLMV--DANL-SPPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 95 ~~~~l~~~~~v~~--~g~~-~~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
....++.+|++++ +..- .......+++..++.+.|+++-.+
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEE
Confidence 4567889999766 3211 122345566666665567666544
No 174
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=27.14 E-value=1.8e+02 Score=21.98 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=28.4
Q ss_pred chHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEe
Q 036840 34 AGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVA 78 (327)
Q Consensus 34 ~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~ 78 (327)
.=+.+.+.+++.|+.+...........+..+.+.|++|.+...+.
T Consensus 73 dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 73 DLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred HHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 345577888899988753211111123356778899999886654
No 175
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=27.11 E-value=4.7e+02 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=22.9
Q ss_pred cCCcEEEEecCC------CHHHHHHHHHHHHhCCCCEEEec
Q 036840 100 SSASVLMVDANL------SPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 100 ~~~~~v~~~g~~------~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
.+.+++++++.. +.+.+..+++.++++++.+++|=
T Consensus 135 ~~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDE 175 (346)
T TIGR03576 135 DGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDD 175 (346)
T ss_pred cCceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEEC
Confidence 345666666541 23557777777888888888874
No 176
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=26.81 E-value=1.1e+02 Score=20.10 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=23.2
Q ss_pred eCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 154 SPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 154 ~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
+++.+|+..|+|... + ...+++|.+.|+..++-.
T Consensus 2 fLT~~El~elTG~k~--------------~-------~~Q~~~L~~~Gi~~~~~~ 35 (47)
T PF13986_consen 2 FLTDEELQELTGYKR--------------P-------SKQIRWLRRNGIPFVVRA 35 (47)
T ss_pred CCCHHHHHHHHCCCC--------------H-------HHHHHHHHHCCCeeEECC
Confidence 468899999998621 1 345677887888765533
No 177
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=26.57 E-value=4.8e+02 Score=23.50 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHHHHHhhhcC--CcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecC
Q 036840 91 WIRQFIHHISS--ASVLMVDANLSPPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 91 ~i~~~~~~l~~--~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
.++.+...++. ++++=++-..+.+.+..+++.+++.+.+++..-.
T Consensus 97 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 97 YLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence 33434444443 4777666555667788888888888888777543
No 178
>PRK08223 hypothetical protein; Validated
Probab=26.57 E-value=61 Score=30.12 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=26.2
Q ss_pred hhhcCCcEEEEecCC--CHHHHHHHHHHHHhCCCCEEEec
Q 036840 97 HHISSASVLMVDANL--SPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 97 ~~l~~~~~v~~~g~~--~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
+.++++|+|+ +..- ..+....+-+.|.+.++|++.-.
T Consensus 113 ~ll~~~DlVv-D~~D~~~~~~r~~ln~~c~~~~iP~V~~~ 151 (287)
T PRK08223 113 AFLDGVDVYV-DGLDFFEFDARRLVFAACQQRGIPALTAA 151 (287)
T ss_pred HHHhCCCEEE-ECCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 4678899885 5432 23566777788999999977753
No 179
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=26.34 E-value=2.8e+02 Score=25.56 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=52.2
Q ss_pred hhhcCCcEEEEecCC-CHHHHHHHHHHHH-hCCCCEEEecCchhhhhhhhcccccceE-EeCCHHHHHHHHHhhcC--CC
Q 036840 97 HHISSASVLMVDANL-SPPALAASCKIAA-ECNIPVWFEPVSVTKSRRITSVVKYITV-VSPNEDELVAMANALSG--EN 171 (327)
Q Consensus 97 ~~l~~~~~v~~~g~~-~~~~~~~l~~~a~-~~~~~v~~d~~~~~~~~~~~~~l~~~dv-v~~n~~E~~~l~~~~~~--~~ 171 (327)
......++++++... +.++...+++... +.+..+.++|.-..+. .+.+.... .+++.+|+...-..... ++
T Consensus 87 ~a~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~----~~~~~~~~p~~is~~el~~~~~~VD~~y~P 162 (272)
T KOG3734|consen 87 NAGIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPE----KWPKDGKFPFFISPDELKFPGFPVDLNYDP 162 (272)
T ss_pred hcCCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchh----hhcccCCCCCcCCHHHHhccCCCcccccch
Confidence 344456778887743 2233334443333 4557888888632211 11111100 12344444432221111 11
Q ss_pred CccCcCCCccchHHHHhcHHHHHHHHHHc--CCCEEEEEeCC
Q 036840 172 MFRPIDRNKHSAESLFQTLKPAILVLLEK--GIRLVVLTLGS 211 (327)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~vvvt~G~ 211 (327)
.+....+...+.++..+......+.+.++ +..++||++|.
T Consensus 163 ~~~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~ 204 (272)
T KOG3734|consen 163 VYKETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGS 204 (272)
T ss_pred hhhhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 12112233355666666666666666664 44478998874
No 180
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.21 E-value=3.3e+02 Score=25.88 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHH--HHHhhcCCCCccCcCCCcc-chHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVA--MANALSGENMFRPIDRNKH-SAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (327)
.+-+..+.+.+++.|++++.++-.... +..+.+++|++.+.-.+++. |..........=.+.+|.. +.+++
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~---~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~--- 216 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRD---VELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEW--- 216 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHH---HHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHH---
Confidence 566777788899999999999865433 33333457777655443321 2222222111123355654 66665
Q ss_pred HHHHHHHHHHcCCCEEEEE
Q 036840 190 LKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt 208 (327)
..+++.+.+.|.+.+++.
T Consensus 217 -l~A~e~i~~~GN~~viL~ 234 (335)
T PRK08673 217 -LMAAEYILAEGNPNVILC 234 (335)
T ss_pred -HHHHHHHHHcCCCeEEEE
Confidence 455667777776554444
No 181
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=26.05 E-value=5.3e+02 Score=23.87 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=64.5
Q ss_pred ecCCchHHHHHHHHHcCCCceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhh
Q 036840 4 VLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESI 83 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~ 83 (327)
-+||.+.|+.-.|.+.+.+-.-+-.+-.|. +.|+....+.. +++.+. .|. -....+... .
T Consensus 7 GvGg~G~n~v~~l~~~~~~~~~~~a~ntD~------~~L~~~~~~~k-~~ig~~-~t~----g~Gag~~~~--------~ 66 (304)
T cd02201 7 GVGGGGGNAVNRMIESGLEGVEFIAANTDA------QALAKSKAPNK-IQLGKE-LTR----GLGAGGDPE--------V 66 (304)
T ss_pred EeCCcHHHHHHHHHHcCCCCceEEEEECCH------HHHhcCCCCcE-EEcCCC-CCC----CCCCCCCHH--------H
Confidence 469999999999999986432233444553 34554444433 222211 000 000111111 1
Q ss_pred cccCCHHHHHHHHhhhcCCcEEEEecC-----CCHHHHHHHHHHHHhCCCCE-EEecCc--hh-------hhhhhhcccc
Q 036840 84 EKFLTPDWIRQFIHHISSASVLMVDAN-----LSPPALAASCKIAAECNIPV-WFEPVS--VT-------KSRRITSVVK 148 (327)
Q Consensus 84 ~~~l~~~~i~~~~~~l~~~~~v~~~g~-----~~~~~~~~l~~~a~~~~~~v-~~d~~~--~~-------~~~~~~~~l~ 148 (327)
......+..+.+.+.++++|.+++-.. -+. ....+++.+++.++++ .+-+.+ .. ....+.++.+
T Consensus 67 g~~~a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG-~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~ 145 (304)
T cd02201 67 GRKAAEESREEIKEALEGADMVFITAGMGGGTGTG-AAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRK 145 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeccCCCcchh-HHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHH
Confidence 111234444555577889999777421 122 3445677788877642 222222 11 1134566667
Q ss_pred cceEEe
Q 036840 149 YITVVS 154 (327)
Q Consensus 149 ~~dvv~ 154 (327)
++|.++
T Consensus 146 ~~d~~i 151 (304)
T cd02201 146 HVDTLI 151 (304)
T ss_pred hCCEEE
Confidence 777643
No 182
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.80 E-value=3e+02 Score=24.19 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe
Q 036840 90 DWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 90 ~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
++++++ ....++.+-|..+.... ...++++.++.|.++-+-+.+-..-+.+..++..+|.+.
T Consensus 78 q~V~~~--a~agas~~tfH~E~~q~-~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vL 139 (224)
T KOG3111|consen 78 QWVDQM--AKAGASLFTFHYEATQK-PAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVL 139 (224)
T ss_pred HHHHHH--HhcCcceEEEEEeeccC-HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEE
Confidence 445543 23578887777765544 778889999999987776654333345555555666643
No 183
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=25.63 E-value=2e+02 Score=25.52 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=37.8
Q ss_pred cEEEEec-C--CCHHHHHHHHHHHHhCCCCEEEecCchh--hhhhhhcccccceEEeCCHH
Q 036840 103 SVLMVDA-N--LSPPALAASCKIAAECNIPVWFEPVSVT--KSRRITSVVKYITVVSPNED 158 (327)
Q Consensus 103 ~~v~~~g-~--~~~~~~~~l~~~a~~~~~~v~~d~~~~~--~~~~~~~~l~~~dvv~~n~~ 158 (327)
+.|.++| + +..+.+..+++.+++.|+.+.++.+... ..+.+.++++.+|.+.++-+
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk 132 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLK 132 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCC
Confidence 3566665 3 3456677889999999999999987643 22555666677787655543
No 184
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.50 E-value=4e+02 Score=22.30 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=10.4
Q ss_pred HHHHHHcCCCEEEEEeCC
Q 036840 194 ILVLLEKGIRLVVLTLGS 211 (327)
Q Consensus 194 ~~~l~~~g~~~vvvt~G~ 211 (327)
++.+.+.+++.|+|-+|.
T Consensus 94 ~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 94 INRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHcCCCEEEEECCC
Confidence 444555566666666653
No 185
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=25.38 E-value=3.5e+02 Score=25.31 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeC
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSP 155 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~ 155 (327)
..+.+... ..+.+...++.+++..++.+....+.+.+++.++||..|=+- .....+..++. .+|++.+
T Consensus 183 ~~~~~~a~-~~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 183 SYDLQDFP-RLKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDESI-TSLDDARNLIELGNVKVINI 252 (324)
T ss_pred CCCHHHHH-HHHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCc-CCHHHHHHHHHcCCCCEEEe
Confidence 34555432 345677788999998887777777888888888999987532 11223344443 4676654
No 186
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.35 E-value=4e+02 Score=22.17 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe-CCHHHHHHH
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDAN-LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS-PNEDELVAM 163 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~-~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~-~n~~E~~~l 163 (327)
.++++.++...+.+.+++-+++-|. .+......+..+....|..+.+-... ....+..-|+++ ++..
T Consensus 14 ~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~------~~~~~~~~Dv~I~iS~s----- 82 (179)
T TIGR03127 14 RIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGET------TTPSIKKGDLLIAISGS----- 82 (179)
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCc------ccCCCCCCCEEEEEeCC-----
Confidence 4678888887788888888887663 23334445555555566655543221 112233334422 2111
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCc
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDG 213 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 213 (327)
| . ..+ +.++++.+.+.|++.+.+|.-...
T Consensus 83 ---------------G-~-t~~----~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 83 ---------------G-E-TES----LVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred ---------------C-C-cHH----HHHHHHHHHHCCCeEEEEECCCCC
Confidence 0 0 111 245567778899999999976544
No 187
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=24.97 E-value=2.9e+02 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDAN--LSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~--~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
..++.+.+..+.+. .+.+++++.+. ..+..+..+.++|.+.|..+++|.+.
T Consensus 154 ~~ID~d~l~~~a~~-~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH 206 (399)
T PF00464_consen 154 GLIDYDELEKLAKE-HKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISH 206 (399)
T ss_dssp SSB-HHHHHHHHHH-H--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TT
T ss_pred CeECHHHHHHHHhh-cCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccc
Confidence 45677777664433 36899999763 23345678888899999999999975
No 188
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=24.43 E-value=1.6e+02 Score=28.82 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=36.4
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecC-------CCHHHHHHHHHHHHhCCCCEEEec
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDAN-------LSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~-------~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
..+++++++. .+-.+.+++++... .+.+.+.+|+++|++++..|+.|-
T Consensus 158 ~~~D~~~le~--~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 158 WTLDPEELES--KITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred ccCChHHHHh--hccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 4567777765 45567898887531 367889999999999998888874
No 189
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.27 E-value=51 Score=29.91 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=42.1
Q ss_pred ecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCC-CCEEEEEecchhhcccC-CHHHHHHHHhhhcCCcE-E
Q 036840 29 LGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVN-GELAAAVASVESIEKFL-TPDWIRQFIHHISSASV-L 105 (327)
Q Consensus 29 vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~-g~~~~~~~~~~~~~~~l-~~~~i~~~~~~l~~~~~-v 105 (327)
+|.-.-|..+.+.|.+.|. +. +.+. |...-.+..+. ....+.. ..| +.+.+.. .++...+ +
T Consensus 6 lgGTtE~r~la~~L~~~g~-v~-~sv~----t~~g~~~~~~~~~~~~v~~-------G~lg~~~~l~~---~l~~~~i~~ 69 (249)
T PF02571_consen 6 LGGTTEGRKLAERLAEAGY-VI-VSVA----TSYGGELLKPELPGLEVRV-------GRLGDEEGLAE---FLRENGIDA 69 (249)
T ss_pred EechHHHHHHHHHHHhcCC-EE-EEEE----hhhhHhhhccccCCceEEE-------CCCCCHHHHHH---HHHhCCCcE
Confidence 4444568889999998886 22 2221 11111111111 1111111 234 5555553 3343333 4
Q ss_pred EEecC--CCHHHHHHHHHHHHhCCCCE
Q 036840 106 MVDAN--LSPPALAASCKIAAECNIPV 130 (327)
Q Consensus 106 ~~~g~--~~~~~~~~l~~~a~~~~~~v 130 (327)
++|.. ...+....+.+.|++.|+|.
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipy 96 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPY 96 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcce
Confidence 44443 33456667777788888763
No 190
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.21 E-value=3.9e+02 Score=26.15 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=34.7
Q ss_pred CCcEEEEecC---CCHHHHHHHHHHHHhCCCCEEEe-cCc--hhhhhhhhccccc-ceEE
Q 036840 101 SASVLMVDAN---LSPPALAASCKIAAECNIPVWFE-PVS--VTKSRRITSVVKY-ITVV 153 (327)
Q Consensus 101 ~~~~v~~~g~---~~~~~~~~l~~~a~~~~~~v~~d-~~~--~~~~~~~~~~l~~-~dvv 153 (327)
+.+.+.++|. +-.+.+.++++.+++.++++.+. .+. ....+.+.+++++ +|.+
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v 132 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREV 132 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEE
Confidence 4577888763 22356789999999999998886 553 2233455556554 5554
No 191
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=24.01 E-value=79 Score=25.78 Aligned_cols=33 Identities=9% Similarity=0.316 Sum_probs=26.2
Q ss_pred ccCCCchhHHHHH-HHHHHcCCCchhhcccchHH
Q 036840 280 RLTGAGDCLVGGT-LASISSGLDVMQSVAVDDAK 312 (327)
Q Consensus 280 dttGAGDaF~ag~-l~~l~~g~~~~~al~~a~aa 312 (327)
.|-|||-+.++.- +.-|.+|++++|++..-+..
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~kIkNte 118 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALKIKNTE 118 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHhcccHH
Confidence 4789999887654 44689999999999875543
No 192
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.88 E-value=3.4e+02 Score=25.57 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeC
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSP 155 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~ 155 (327)
..++.++.. +.+.+...++.+++..++.+....+.+.+++.++||..|=+- .....+.++++ .+|++.+
T Consensus 187 ~~~~~~~a~-~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 187 SAYTLADIP-LLKRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDESI-QSAEDARKAIELGACKIINI 257 (354)
T ss_pred CCCCHHHHH-HHHHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCcc-CCHHHHHHHHHcCCCCEEEe
Confidence 334555543 345677788889988777766777777777888999988432 22233444443 3566644
No 193
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.74 E-value=2.4e+02 Score=26.68 Aligned_cols=71 Identities=13% Similarity=0.280 Sum_probs=44.5
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCC
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPN 156 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n 156 (327)
...+.++-..+.+.+....+.+++-.++.+......+++++.++||..|=+-. ....+..+++ .+|++-+.
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~-~~~~~~~~~~~~~~d~v~~d 257 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGERLF-SRWDFKELLEDGAVDIIQPD 257 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHHhCCCCEEeccccc-CHHHHHHHHHhCCCCEEecC
Confidence 34565555455566777888888877766667777777778889998875421 1123333333 46666553
No 194
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=23.71 E-value=4.2e+02 Score=25.43 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=24.3
Q ss_pred cCCcEEEEecCCC----HHHHHHHHHHHHhCCCCEEEecC
Q 036840 100 SSASVLMVDANLS----PPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 100 ~~~~~v~~~g~~~----~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
.+.++|+++.... ...+..+++.|+++++++++|-.
T Consensus 145 ~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 3567787743211 12357888889999999999964
No 195
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.52 E-value=4.6e+02 Score=22.29 Aligned_cols=19 Identities=16% Similarity=0.534 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhCCCCEEE
Q 036840 114 PALAASCKIAAECNIPVWF 132 (327)
Q Consensus 114 ~~~~~l~~~a~~~~~~v~~ 132 (327)
+....+++.+.+.+.++++
T Consensus 35 dl~~~l~~~~~~~~~~vfl 53 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFL 53 (177)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 4444555555555544444
No 196
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=23.50 E-value=4.4e+02 Score=22.05 Aligned_cols=104 Identities=12% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCHHHHHHHHhhhc-CCcEEEEec-C--CCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCC----
Q 036840 87 LTPDWIRQFIHHIS-SASVLMVDA-N--LSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPN---- 156 (327)
Q Consensus 87 l~~~~i~~~~~~l~-~~~~v~~~g-~--~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n---- 156 (327)
++.+.+........ ....+.++| + +.++ +..+++.+++.+..+.+..+... .+.+.++++ ..|.+.++
T Consensus 47 ~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~~-~~~l~~l~~~g~~~~v~isl~~~ 124 (191)
T TIGR02495 47 IEVEFLLEFLRSRQGLIDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGSN-PRVLEELLEEGLVDYVAMDVKAP 124 (191)
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCCC-HHHHHHHHhcCCCcEEEEeccCC
Confidence 55555544322222 234566665 2 2344 77888888889988888887643 233344433 23544332
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEE
Q 036840 157 EDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLT 208 (327)
Q Consensus 157 ~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 208 (327)
.++...+.+.. .... +.+.+.++.+.+.|.+..|.+
T Consensus 125 ~~~~~~~~g~~-------------~~~~---~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 125 PEKYPELYGLE-------------KNGS---NNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred hHHHHHHHCCC-------------CchH---HHHHHHHHHHHHcCCCEEEEE
Confidence 23333333321 0111 123556677777787755544
No 197
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=23.37 E-value=6.1e+02 Score=24.47 Aligned_cols=96 Identities=7% Similarity=0.069 Sum_probs=52.3
Q ss_pred ceEEEeecCCcchHHHHH-HHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchhhcccCCHHHHHHHHhhhcC
Q 036840 23 PYMISALGLDMAGNILLE-HWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISS 101 (327)
Q Consensus 23 v~~i~~vG~D~~g~~i~~-~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~ 101 (327)
+.++|.-| ..|..+.+ .|++..+....+..-.....+....-. .|+..... ...++ +.+++
T Consensus 4 VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f--~g~~~~v~-------~~~~~-------~~~~~ 65 (369)
T PRK06598 4 VGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSF--GGKEGTLQ-------DAFDI-------DALKK 65 (369)
T ss_pred EEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchhhCCccccc--CCCcceEE-------ecCCh-------hHhcC
Confidence 44455444 57888887 778777775444333222222221111 11110000 00112 12467
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHhCCCC-EEEecCchh
Q 036840 102 ASVLMVDANLSPPALAASCKIAAECNIP-VWFEPVSVT 138 (327)
Q Consensus 102 ~~~v~~~g~~~~~~~~~l~~~a~~~~~~-v~~d~~~~~ 138 (327)
+|++++.. +.+....+...+.+.|++ +++|.++.+
T Consensus 66 ~Divf~a~--~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITCQ--GGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEECC--CHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 89988865 456777888888778885 899988643
No 198
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=23.31 E-value=1.8e+02 Score=21.47 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.1
Q ss_pred HHHHHHcCCCceEEEeecCCcchHHHHHHHHhcC
Q 036840 13 AECMSKLGSKPYMISALGLDMAGNILLEHWKSAG 46 (327)
Q Consensus 13 a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~g 46 (327)
....+++|.+.+|-++-++|.-.+.+.+.|.+.|
T Consensus 27 ~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 27 AAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 3456889999999999999999999999998876
No 199
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.24 E-value=5e+02 Score=23.55 Aligned_cols=103 Identities=9% Similarity=-0.016 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe-CCHHHHHHH
Q 036840 86 FLTPDWIRQFIHHISSASVLMVDANL-SPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS-PNEDELVAM 163 (327)
Q Consensus 86 ~l~~~~i~~~~~~l~~~~~v~~~g~~-~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~-~n~~E~~~l 163 (327)
.++++.++...+.+.++.-+++-|.- +......+.....+.|+++.+-...... ......+..-|+++ ++..
T Consensus 124 ~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~-~~~~~~~~~~Dl~I~iS~s----- 197 (292)
T PRK11337 124 ILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIM-LMSAALLQEGDVVLVVSHS----- 197 (292)
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHH-HHHHhcCCCCCEEEEEeCC-----
Confidence 36677777777788888877765532 3333444444444556655443221100 01111233334322 2111
Q ss_pred HHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceE
Q 036840 164 ANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIRLVVLTLGSDGVL 215 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 215 (327)
| .+ .+ +.++++...+.|++.|.+|.....-+
T Consensus 198 ---------------G-~t-~~----~~~~~~~ak~~g~~ii~IT~~~~s~l 228 (292)
T PRK11337 198 ---------------G-RT-SD----VIEAVELAKKNGAKIICITNSYHSPI 228 (292)
T ss_pred ---------------C-CC-HH----HHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 0 01 11 24556777788999999998765543
No 200
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=23.23 E-value=4.2e+02 Score=24.57 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=39.6
Q ss_pred ccCCHHHHHHHHhhhcC---CcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeC
Q 036840 85 KFLTPDWIRQFIHHISS---ASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSP 155 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~---~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~ 155 (327)
...+.++-..+.+.+.. .++.+++..++.. ..+.+++++..+||..|=+-. ....+..++. .+|++.+
T Consensus 163 ~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs~~-~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 163 GGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDESLW-ELPQLADEYGPGWRGALVI 235 (307)
T ss_pred CCCCHHHHHHHHHhcccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCCcC-ChHHHHHHHhcCCCceEEE
Confidence 34556554445556665 7788888776544 455556667788999885432 1223344433 2566544
No 201
>PRK14057 epimerase; Provisional
Probab=23.05 E-value=2.3e+02 Score=25.85 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCC-----------CEEEecCchhhhhhhhcccccceEEe
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNI-----------PVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~-----------~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
.+|++.+..+.+. ...+.++..++.|+ =+.++|.+ ..+.+..+++.+|.|.
T Consensus 98 Gad~It~H~Ea~~-~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VL 159 (254)
T PRK14057 98 GAHCITLQAEGDI-HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQ 159 (254)
T ss_pred CCCEEEEeecccc-CHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEE
Confidence 6899888776442 35667777788875 25666654 4456777788888653
No 202
>PRK11430 putative CoA-transferase; Provisional
Probab=23.00 E-value=91 Score=30.14 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=45.2
Q ss_pred HhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCC
Q 036840 124 AECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIR 203 (327)
Q Consensus 124 ~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 203 (327)
++.+.-|.+|+.+...++.+.++++.+|||+-|..--. ...+.. + .+.|.+.+++
T Consensus 68 NrgKrsv~lDLk~~~Gr~~~~~L~~~ADVvien~rpg~--~~rlGl------------~-----------y~~L~~~nP~ 122 (381)
T PRK11430 68 NHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGT--MEKLGF------------S-----------WETLQEINPR 122 (381)
T ss_pred CCCCeEEEecCCCHHHHHHHHHHHhcCCEEEeCCCccH--HHHcCC------------C-----------HHHHHHHCCC
Confidence 44455689999888888899999999999999887311 111111 1 2456677899
Q ss_pred EEEEEeCCCc
Q 036840 204 LVVLTLGSDG 213 (327)
Q Consensus 204 ~vvvt~G~~G 213 (327)
+|.++....|
T Consensus 123 LI~~sisgfG 132 (381)
T PRK11430 123 LIYASSSGFG 132 (381)
T ss_pred ceEEeeeeCC
Confidence 9998875444
No 203
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.82 E-value=6.2e+02 Score=23.48 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHH--HHHHhhcCCCCccCcCCCc-cchHHHHhc
Q 036840 113 PPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELV--AMANALSGENMFRPIDRNK-HSAESLFQT 189 (327)
Q Consensus 113 ~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~--~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (327)
.+-+..+.+..++.|.+|+-|..... .+..+.+++|++.+...-++ .|+.........=.+.+|. .+++++
T Consensus 73 eeGL~iL~~vk~~~GlpvvTeV~~~~---~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~--- 146 (281)
T PRK12457 73 DEGLRIFEEVKARFGVPVITDVHEVE---QAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQM--- 146 (281)
T ss_pred HHHHHHHHHHHHHHCCceEEEeCCHH---HHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHH---
Confidence 35565666677789999999986533 45556677999866552221 1222222211111334453 445554
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCceE
Q 036840 190 LKPAILVLLEKGIRLVVLTLGSDGVL 215 (327)
Q Consensus 190 ~~~~~~~l~~~g~~~vvvt~G~~G~~ 215 (327)
.-+++++.+.|.+.|+++ ++|..
T Consensus 147 -~~aae~i~~~Gn~~vilc--ERG~~ 169 (281)
T PRK12457 147 -KHVVSKCREAGNDRVILC--ERGSS 169 (281)
T ss_pred -HHHHHHHHHcCCCeEEEE--eCCCC
Confidence 556677777777777776 44443
No 204
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.49 E-value=1.3e+02 Score=26.81 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=38.0
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEeC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVSP 155 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~ 155 (327)
..++++.+..+.+. ...++++..++.|+..-+-.++....+.+..+++.+|.|.+
T Consensus 84 ~gad~I~~H~Ea~~-~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 84 AGATTISFHPEASR-HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLV 138 (223)
T ss_pred hCCCEEEEcccCcc-cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEE
Confidence 36899888877543 35678888899998855555444455567778888887543
No 205
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=22.45 E-value=2.1e+02 Score=26.94 Aligned_cols=70 Identities=6% Similarity=0.151 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeC
Q 036840 85 KFLTPDWIRQFIHHISSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSP 155 (327)
Q Consensus 85 ~~l~~~~i~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~ 155 (327)
..++.++.-.+.+.+...++.+++..++.+....+.+..+..++||..|=+-. ....+.++++ .+|++.+
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~-~~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 198 GRWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLY-TRWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred CCCCHHHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccc-cHHHHHHHHHhCCCCEEec
Confidence 34556555455566677777777766655445555555666778888874321 1233444443 4666544
No 206
>PRK08005 epimerase; Validated
Probab=22.40 E-value=1.3e+02 Score=26.63 Aligned_cols=53 Identities=4% Similarity=-0.106 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccccceEEe
Q 036840 101 SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKYITVVS 154 (327)
Q Consensus 101 ~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~ 154 (327)
.++++.+..+.+. ...++++..|+.|...-+-.++....+.+..+++.+|.|.
T Consensus 81 gad~It~H~Ea~~-~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~Vl 133 (210)
T PRK08005 81 RPGWIFIHAESVQ-NPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALM 133 (210)
T ss_pred CCCEEEEcccCcc-CHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEE
Confidence 6888888776443 3567888889999886555544444456677778888753
No 207
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.33 E-value=1.6e+02 Score=26.75 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEec
Q 036840 184 ESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKE 220 (327)
Q Consensus 184 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 220 (327)
+++.+....+-+.|.+.|.+..+-|.|.+|+.++-.=
T Consensus 130 ~~v~~~A~~~r~~L~~lgL~~f~KTSG~kGlHV~vPl 166 (245)
T TIGR02778 130 KLVVEAAQLIRELLDELGLESFVKTSGGKGLHVYVPL 166 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEC
Confidence 4444333333344555799999999999999998653
No 208
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.27 E-value=5.9e+02 Score=23.06 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=43.1
Q ss_pred HHhhhcCCcEEEEecC-C--------CHHHHHHHHHHHHhCCCCEEEecCch------hhhhhhhcccccceEEeCCHHH
Q 036840 95 FIHHISSASVLMVDAN-L--------SPPALAASCKIAAECNIPVWFEPVSV------TKSRRITSVVKYITVVSPNEDE 159 (327)
Q Consensus 95 ~~~~l~~~~~v~~~g~-~--------~~~~~~~l~~~a~~~~~~v~~d~~~~------~~~~~~~~~l~~~dvv~~n~~E 159 (327)
+.+.++++|++++.|. + +.-....+...|+..++++++=.++. ..+..+..+++.+|.+.+=++.
T Consensus 58 ~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~~~~r~~~~~~l~~~~~i~vRD~~ 137 (298)
T TIGR03609 58 VLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRRLSRWLVRRVLRGCRAISVRDAA 137 (298)
T ss_pred HHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCCHHHHHHHHHHHccCCEEEEeCHH
Confidence 3456788999887652 1 11112335566777888776644331 1223456788899999886655
Q ss_pred HHHHHHh
Q 036840 160 LVAMANA 166 (327)
Q Consensus 160 ~~~l~~~ 166 (327)
...+...
T Consensus 138 S~~~l~~ 144 (298)
T TIGR03609 138 SYRLLKR 144 (298)
T ss_pred HHHHHHH
Confidence 5555543
No 209
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=22.15 E-value=1.6e+02 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=25.9
Q ss_pred hHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEe
Q 036840 183 AESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 219 (327)
.+++.+....+-+.|.+.|....+-|.|.+|..++-.
T Consensus 113 f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vP 149 (227)
T cd04861 113 FEDVVEAALLLRELLDELGLESFPKTSGGKGLHVYVP 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEE
Confidence 3444443333334455579999999999999999865
No 210
>PTZ00066 pyruvate kinase; Provisional
Probab=22.12 E-value=4.1e+02 Score=26.94 Aligned_cols=75 Identities=5% Similarity=-0.031 Sum_probs=54.1
Q ss_pred cCCHHHHHHH-H-hhhcCCcEEEEecCCCHHHHHHHHHHHHhCC--CCEEEecCchhhhhhhhcccccceEEeCCHHHH
Q 036840 86 FLTPDWIRQF-I-HHISSASVLMVDANLSPPALAASCKIAAECN--IPVWFEPVSVTKSRRITSVVKYITVVSPNEDEL 160 (327)
Q Consensus 86 ~l~~~~i~~~-~-~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~--~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~ 160 (327)
.+++.|...+ . -.-.+.|++.++.--+.+.+..+.++..+.+ ++|+.-......-+.+.++++.+|-+.+-.=++
T Consensus 206 ~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDL 284 (513)
T PTZ00066 206 VIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDL 284 (513)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEcccc
Confidence 3567776653 1 2234689999987667778888888887654 677887877666678899999999888766554
No 211
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=22.05 E-value=2.6e+02 Score=26.63 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=42.2
Q ss_pred hhcCCcEEEEe-cCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhcccc--cceEEeCCHHHH
Q 036840 98 HISSASVLMVD-ANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVK--YITVVSPNEDEL 160 (327)
Q Consensus 98 ~l~~~~~v~~~-g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~--~~dvv~~n~~E~ 160 (327)
....+|.+.+- .-++++.+..+.++|++.|.-+.++..... .+...+. .+++|-+|-.++
T Consensus 200 r~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~---ElerAl~~~ga~iIGINNRdL 262 (338)
T PLN02460 200 RSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDER---EMDRVLGIEGVELIGINNRSL 262 (338)
T ss_pred HHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHH---HHHHHHhcCCCCEEEEeCCCC
Confidence 44567776553 346777899999999999999999997643 3334444 377777776554
No 212
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=21.93 E-value=2e+02 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
.+.|++|+... ....+..+++ +..++|++++...
T Consensus 72 ~~~Dvv~~~~~-~~~~~~~~~~--~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 72 ERPDVVHAHSP-TAGLVAALAR--RRRGIPLVVTVHG 105 (160)
T ss_dssp ---SEEEEEHH-HHHHHHHHHH--HHHT--EEEE-SS
T ss_pred cCCeEEEeccc-chhHHHHHHH--HccCCcEEEEECC
Confidence 67999999862 1112222222 3568999998865
No 213
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.76 E-value=3.9e+02 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=29.1
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
.++.+|++..+.++.....+...|+..++|+...
T Consensus 40 gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 40 GKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 3588899999999999999999999999998743
No 214
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=21.74 E-value=5.2e+02 Score=22.24 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=25.1
Q ss_pred hhhcCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 97 HHISSASVLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 97 ~~l~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
+.++++|+++.... +.+....+.+.|++.++|++.-
T Consensus 107 ~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 107 LLINNVDLVLDCTD-NFATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 46778898765432 3466667778888888886653
No 215
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=21.55 E-value=2.5e+02 Score=24.63 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=47.1
Q ss_pred CCCEEEEEecchhh--cccCCHHHHHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhCCCCEEEecC-chhhhhhhh
Q 036840 70 NGELAAAVASVESI--EKFLTPDWIRQFIHHISSASVLMVDA--NLSPPALAASCKIAAECNIPVWFEPV-SVTKSRRIT 144 (327)
Q Consensus 70 ~g~~~~~~~~~~~~--~~~l~~~~i~~~~~~l~~~~~v~~~g--~~~~~~~~~l~~~a~~~~~~v~~d~~-~~~~~~~~~ 144 (327)
-|.+...+.+...+ +..|..+.++.+...+...|+++++. ++.......+. ++-..+++|.. ........-
T Consensus 63 ~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~----d~~~v~VidvteGe~~P~K~g 138 (202)
T COG0378 63 PGEPIIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFSPDLG----DHLRVVVIDVTEGEDIPRKGG 138 (202)
T ss_pred CCCeeEEeccCCccCCcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccCcchh----hceEEEEEECCCCCCCcccCC
Confidence 35555555443344 22344444555544455589999863 33222222222 11123445543 222112212
Q ss_pred cccccceEEeCCHHHHHHHHHh
Q 036840 145 SVVKYITVVSPNEDELVAMANA 166 (327)
Q Consensus 145 ~~l~~~dvv~~n~~E~~~l~~~ 166 (327)
-.+..+|++++|.-++....+.
T Consensus 139 P~i~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 139 PGIFKADLLVINKTDLAPYVGA 160 (202)
T ss_pred CceeEeeEEEEehHHhHHHhCc
Confidence 2344599999999999887764
No 216
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=21.52 E-value=6.6e+02 Score=23.35 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=53.2
Q ss_pred ecCCchHHHHHHHHHcCCC-ceEEEeecCCcchHHHHHHHHhcCCCccCeeecCCCCceEEEEEecCCCCEEEEEecchh
Q 036840 4 VLGGVARNVAECMSKLGSK-PYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVES 82 (327)
Q Consensus 4 ~~GG~~~N~a~~la~LG~~-v~~i~~vG~D~~g~~i~~~l~~~gV~~~~i~~~~~~~t~~~~~~~d~~g~~~~~~~~~~~ 82 (327)
-+||.+.|++-.+...+.. +.++ .+-.|. +.|.....+.. +.+.+. .|. -....+.+.
T Consensus 7 GvGg~G~n~v~~~~~~~~~~~~~i-ainTd~------~~L~~~~a~~k-i~iG~~-~t~----g~GaG~~~~-------- 65 (303)
T cd02191 7 GFGGAGGNIVDKFLEYDKEGRSAV-AVNTDA------QDLLGLEAENR-VLIGQA-RTK----GLGAGANPE-------- 65 (303)
T ss_pred EECchHHHHHHHHHHcCCCCccEE-EEECcH------HHHhcCCCCcE-EecCCc-ccc----CCCCCCCHH--------
Confidence 4699999999999998854 3443 555663 34444333322 222111 010 000111111
Q ss_pred hcccCCHHHHHHHHhhhcCCcEEEEecCC----CHHHHHHHHHHHHhCCCC
Q 036840 83 IEKFLTPDWIRQFIHHISSASVLMVDANL----SPPALAASCKIAAECNIP 129 (327)
Q Consensus 83 ~~~~l~~~~i~~~~~~l~~~~~v~~~g~~----~~~~~~~l~~~a~~~~~~ 129 (327)
.......+..+.+.+.+..+|.|++-..+ -.-....+++.+++.+.+
T Consensus 66 ~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~ 116 (303)
T cd02191 66 LGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTL 116 (303)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCC
Confidence 01112233444555678889997774321 113455666777777654
No 217
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.38 E-value=1.7e+02 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=26.0
Q ss_pred hHHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEe
Q 036840 183 AESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSK 219 (327)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 219 (327)
.+++++.....-+.|.+.|....+-|.|.+|..++-.
T Consensus 108 f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vP 144 (223)
T cd04866 108 FSLAVEAANLLKEILDALGLTSFVKTSGNKGLQVYIP 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEE
Confidence 3444443333344455679999999999999998865
No 218
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.32 E-value=1.7e+02 Score=26.20 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEec
Q 036840 184 ESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKE 220 (327)
Q Consensus 184 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 220 (327)
+++++....+-+.|.+.|.+..+-|.|.+|..++-.=
T Consensus 115 ~~v~~~A~~vr~~L~~lgL~sf~KTSG~kGlHv~vPl 151 (228)
T cd04865 115 EDVVEVALLVREVLDELGLRGYPKTSGARGLHIYVPI 151 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEc
Confidence 4444333333344455799999999999999998653
No 219
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.01 E-value=2.1e+02 Score=27.81 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=40.6
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchh-hhhhhhcccccceEEeC
Q 036840 100 SSASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVT-KSRRITSVVKYITVVSP 155 (327)
Q Consensus 100 ~~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~-~~~~~~~~l~~~dvv~~ 155 (327)
..+|++.+.++.+.+.....++.+++.|+.+.+|.-..+ ..+.+..++..+|++.+
T Consensus 249 aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vll 305 (391)
T PRK13307 249 ATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVEL 305 (391)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEE
Confidence 368998888877777888999999999999999854422 33455555556776533
No 220
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=20.98 E-value=1.8e+02 Score=26.73 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCcEEEEec------CCCHHHHHHHHHHHHhCCCCEEEec
Q 036840 101 SASVLMVDA------NLSPPALAASCKIAAECNIPVWFEP 134 (327)
Q Consensus 101 ~~~~v~~~g------~~~~~~~~~l~~~a~~~~~~v~~d~ 134 (327)
+.+++++.. ..+.+.+.++++.|+++++.+++|-
T Consensus 127 ~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 127 PPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred cceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeech
Confidence 467777752 1245667889999999999999994
No 221
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=20.92 E-value=1.8e+02 Score=26.08 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHhcHHHHHHHHHHcCCCEEEEEeCCCceEEEEec
Q 036840 184 ESLFQTLKPAILVLLEKGIRLVVLTLGSDGVLLCSKE 220 (327)
Q Consensus 184 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 220 (327)
+++.+.....-+.|.+.|....+-|.|++|..++-.=
T Consensus 114 ~~v~~~A~~~r~~L~~lgL~~~~KTSG~kGlHV~vPl 150 (227)
T cd04862 114 KAVVEAALLVRELLDELGLESFVKTSGGKGLHVVVPL 150 (227)
T ss_pred HHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEc
Confidence 4443332333344455799999999999999998653
No 222
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.92 E-value=2.2e+02 Score=26.36 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHHhhhc-CCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEecCchhhhhhhhccccc-ceEEeCC
Q 036840 90 DWIRQFIHHIS-SASVLMVDANLSPPALAASCKIAAECNIPVWFEPVSVTKSRRITSVVKY-ITVVSPN 156 (327)
Q Consensus 90 ~~i~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~-~dvv~~n 156 (327)
+.++++.+.+. .+|++.++. ++++.+.+++++. .....+.++.+.-...+.+.+..+. +|+++.+
T Consensus 196 esle~~~eAl~agaDiImLDN-m~~e~~~~av~~l-~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDN-MSPEELKEAVKLL-GLAGRALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecC-CCHHHHHHHHHHh-ccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 33444445555 599999985 5677788888876 3334778887764444566666655 7887764
No 223
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=20.90 E-value=4.6e+02 Score=25.00 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=23.5
Q ss_pred CCcEEEEecCC----CHHHHHHHHHHHHhCCCCEEEecC
Q 036840 101 SASVLMVDANL----SPPALAASCKIAAECNIPVWFEPV 135 (327)
Q Consensus 101 ~~~~v~~~g~~----~~~~~~~l~~~a~~~~~~v~~d~~ 135 (327)
+.++++++... ....+..+.+.|+++++++++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 56777775321 112366778888888999999865
No 224
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.70 E-value=5.1e+02 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCc
Q 036840 110 NLSPPALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 110 ~~~~~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
+++.+...++.++|++.|+..+..|-.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd 78 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFD 78 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCC
Confidence 467888999999999999988877754
No 225
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=20.45 E-value=1.2e+02 Score=29.62 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=45.2
Q ss_pred HhCCCCEEEecCchhhhhhhhcccccceEEeCCHHHHHHHHHhhcCCCCccCcCCCccchHHHHhcHHHHHHHHHHcCCC
Q 036840 124 AECNIPVWFEPVSVTKSRRITSVVKYITVVSPNEDELVAMANALSGENMFRPIDRNKHSAESLFQTLKPAILVLLEKGIR 203 (327)
Q Consensus 124 ~~~~~~v~~d~~~~~~~~~~~~~l~~~dvv~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 203 (327)
++.+.-|.+|+.+...++.+.++++.+|||+-|...-. ...+.. + .+.|.+.+++
T Consensus 63 nr~Krsi~lDLk~~~g~~~l~~Lv~~ADVvien~rpg~--~~rlGL------------~-----------~~~L~~~nP~ 117 (415)
T TIGR03253 63 NCNKRSITLNTKTPEGKEVLEELIKKADVMVENFGPGA--LDRMGF------------T-----------WEYIQEINPR 117 (415)
T ss_pred CCCCeEEEeeCCCHHHHHHHHHHHhhCCEEEECCCCCh--HHHcCC------------C-----------HHHHHHhCCC
Confidence 44455689999888888889999999999999886411 111111 1 2456677899
Q ss_pred EEEEEeCCCc
Q 036840 204 LVVLTLGSDG 213 (327)
Q Consensus 204 ~vvvt~G~~G 213 (327)
+|.++....|
T Consensus 118 LV~~sisgfG 127 (415)
T TIGR03253 118 LILASIKGFG 127 (415)
T ss_pred eEEEEeeecC
Confidence 9988875544
No 226
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=20.43 E-value=1.9e+02 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHhCCCCEEEe
Q 036840 104 VLMVDANLSPPALAASCKIAAECNIPVWFE 133 (327)
Q Consensus 104 ~v~~~g~~~~~~~~~l~~~a~~~~~~v~~d 133 (327)
++++|-.+|.+.+..+++.+.+.|+++++-
T Consensus 2 ~vFvS~SMP~~~Lk~l~~~a~~~g~~~VlR 31 (130)
T TIGR02742 2 MVFVSFSMPEPLLKQLLDQAEALGAPLVIR 31 (130)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHhCCeEEEe
Confidence 456677788888889998888888888775
No 227
>PRK15447 putative protease; Provisional
Probab=20.35 E-value=5.7e+02 Score=23.67 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCcEEEEecC-------CCHHHHHHHHHHHHhCCCCEEEecCchh----hhhhhhccccc-ce-EEeCCHHHHHHHH
Q 036840 101 SASVLMVDAN-------LSPPALAASCKIAAECNIPVWFEPVSVT----KSRRITSVVKY-IT-VVSPNEDELVAMA 164 (327)
Q Consensus 101 ~~~~v~~~g~-------~~~~~~~~l~~~a~~~~~~v~~d~~~~~----~~~~~~~~l~~-~d-vv~~n~~E~~~l~ 164 (327)
.+|.||+... .+.+.+.++++.+++.|+.|++-+.... ....+.+++.. .| +++-|-..+..+-
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVRLLA 104 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHHHHH
Confidence 6899999642 4667888999999999999888664421 11233333332 34 4455666655443
No 228
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.29 E-value=4.5e+02 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCcEEEEecCCCH-HHHHHHHHHHHhCCCCEEEecCc
Q 036840 101 SASVLMVDANLSP-PALAASCKIAAECNIPVWFEPVS 136 (327)
Q Consensus 101 ~~~~v~~~g~~~~-~~~~~l~~~a~~~~~~v~~d~~~ 136 (327)
.+.++++....++ +....+...|+++++|+.+-.+.
T Consensus 46 kakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk 82 (122)
T PRK04175 46 IAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK 82 (122)
T ss_pred CccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 4778888888866 45678889999999997666543
No 229
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=20.02 E-value=2.3e+02 Score=20.86 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHcCCCceEEEeecCCcchHHHHHHHHhcC
Q 036840 13 AECMSKLGSKPYMISALGLDMAGNILLEHWKSAG 46 (327)
Q Consensus 13 a~~la~LG~~v~~i~~vG~D~~g~~i~~~l~~~g 46 (327)
+...+++|.++.|-++-.+|.-.+.+.+.|.+.|
T Consensus 25 ~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 25 AAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 4456889999999999999999999999999877
Done!