Query 036841
Match_columns 412
No_of_seqs 125 out of 1505
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 8E-75 1.7E-79 595.1 46.4 402 4-412 138-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 7.3E-72 1.6E-76 569.4 41.9 381 3-412 164-554 (596)
3 PLN02792 oxidoreductase 100.0 1.8E-71 3.9E-76 564.2 41.3 363 4-412 151-523 (536)
4 PLN02991 oxidoreductase 100.0 2.1E-70 4.5E-75 555.7 40.9 359 4-412 163-530 (543)
5 KOG1263 Multicopper oxidases [ 100.0 6.9E-70 1.5E-74 549.0 41.0 389 4-412 163-555 (563)
6 PLN02354 copper ion binding / 100.0 5.4E-69 1.2E-73 548.6 41.5 367 4-412 162-538 (552)
7 PLN02835 oxidoreductase 100.0 1.4E-68 3E-73 544.8 41.2 360 4-412 164-531 (539)
8 PLN02168 copper ion binding / 100.0 1.5E-67 3.3E-72 535.7 40.5 362 4-412 161-541 (545)
9 PLN02604 oxidoreductase 100.0 1.7E-66 3.6E-71 534.8 43.2 377 4-412 159-561 (566)
10 TIGR03388 ascorbase L-ascorbat 100.0 2.7E-66 5.9E-71 531.7 42.0 377 4-412 136-538 (541)
11 PLN02191 L-ascorbate oxidase 100.0 3.6E-66 7.8E-71 531.3 41.1 377 4-412 158-561 (574)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.7E-62 5.8E-67 500.9 38.5 359 4-395 142-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 4.8E-46 1E-50 381.0 33.7 259 34-392 248-586 (587)
14 PRK10883 FtsI repressor; Provi 100.0 1.9E-44 4.2E-49 363.3 28.1 277 3-394 182-469 (471)
15 PRK10965 multicopper oxidase; 100.0 6.1E-44 1.3E-48 362.8 30.1 299 3-392 182-522 (523)
16 COG2132 SufI Putative multicop 100.0 4.4E-36 9.5E-41 303.6 27.8 285 3-393 162-449 (451)
17 PF00394 Cu-oxidase: Multicopp 100.0 1.9E-33 4.1E-38 244.9 13.5 147 3-153 3-158 (159)
18 PF07731 Cu-oxidase_2: Multico 100.0 1.3E-30 2.7E-35 222.1 12.4 107 284-394 30-136 (138)
19 TIGR02376 Cu_nitrite_red nitri 99.8 1.2E-19 2.5E-24 174.2 9.5 138 4-155 158-299 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.5 4.5E-12 9.7E-17 121.9 25.5 89 291-393 205-296 (311)
21 PLN02604 oxidoreductase 99.0 1E-09 2.2E-14 114.1 9.7 92 289-397 56-147 (566)
22 PF07732 Cu-oxidase_3: Multico 98.9 8.5E-09 1.9E-13 84.7 8.1 90 288-395 26-116 (117)
23 TIGR03389 laccase laccase, pla 98.7 1.5E-06 3.1E-11 90.3 20.6 77 288-378 187-264 (539)
24 TIGR03388 ascorbase L-ascorbat 98.6 1.4E-07 3.1E-12 97.7 10.1 91 289-396 33-123 (541)
25 PLN02835 oxidoreductase 98.4 4.8E-05 1E-09 78.7 22.3 73 289-375 203-276 (539)
26 PLN02792 oxidoreductase 98.3 9.7E-05 2.1E-09 76.3 22.0 73 289-375 194-267 (536)
27 PLN02354 copper ion binding / 98.3 9.1E-05 2E-09 76.8 21.9 77 287-377 206-283 (552)
28 PF00394 Cu-oxidase: Multicopp 98.3 4E-06 8.6E-11 72.9 9.3 95 286-394 58-157 (159)
29 PLN02191 L-ascorbate oxidase 98.3 4.6E-06 9.9E-11 86.9 10.9 86 288-396 54-145 (574)
30 TIGR03390 ascorbOXfungal L-asc 98.3 0.00017 3.7E-09 74.8 22.0 68 288-369 198-266 (538)
31 PLN02991 oxidoreductase 98.2 0.00013 2.8E-09 75.4 19.6 72 289-374 203-276 (543)
32 PRK10883 FtsI repressor; Provi 98.2 0.00029 6.4E-09 71.9 21.7 74 289-376 221-295 (471)
33 TIGR03095 rusti_cyanin rusticy 98.1 1E-05 2.2E-10 69.1 8.5 90 288-393 52-148 (148)
34 TIGR01480 copper_res_A copper- 98.1 2.3E-05 5E-10 81.6 10.6 87 289-395 77-163 (587)
35 PF07731 Cu-oxidase_2: Multico 98.0 0.00011 2.5E-09 61.9 11.3 79 51-131 32-121 (138)
36 PLN02168 copper ion binding / 97.9 4.2E-05 9.1E-10 79.0 10.1 90 289-397 58-148 (545)
37 KOG1263 Multicopper oxidases [ 97.9 0.0022 4.7E-08 66.4 20.7 233 32-377 47-286 (563)
38 PRK10965 multicopper oxidase; 97.8 0.00011 2.4E-09 75.8 9.9 88 36-130 415-508 (523)
39 TIGR02656 cyanin_plasto plasto 97.8 0.0001 2.3E-09 58.6 7.7 83 288-393 17-99 (99)
40 PLN00044 multi-copper oxidase- 97.7 0.00016 3.4E-09 75.3 9.7 89 289-396 61-150 (596)
41 TIGR03096 nitroso_cyanin nitro 97.5 0.00064 1.4E-08 56.5 8.4 59 289-378 62-120 (135)
42 PRK02888 nitrous-oxide reducta 97.1 0.0019 4.2E-08 66.7 9.1 78 289-394 556-634 (635)
43 PF00127 Copper-bind: Copper b 97.1 0.0047 1E-07 49.0 9.1 82 288-393 17-99 (99)
44 PF13473 Cupredoxin_1: Cupredo 96.8 0.0046 9.9E-08 49.5 7.2 66 289-386 36-101 (104)
45 PRK02710 plastocyanin; Provisi 96.5 0.017 3.6E-07 47.6 8.1 72 289-393 48-119 (119)
46 COG2132 SufI Putative multicop 96.0 0.036 7.8E-07 56.5 9.7 76 52-130 356-434 (451)
47 PF07732 Cu-oxidase_3: Multico 96.0 0.014 3E-07 47.9 5.2 87 32-132 14-101 (117)
48 COG4454 Uncharacterized copper 96.0 0.021 4.6E-07 48.3 6.2 94 289-393 64-157 (158)
49 TIGR02375 pseudoazurin pseudoa 95.9 0.042 9.2E-07 44.8 7.6 41 356-400 54-94 (116)
50 TIGR03095 rusti_cyanin rusticy 95.6 0.09 2E-06 44.9 8.7 89 30-129 39-132 (148)
51 TIGR02657 amicyanin amicyanin. 94.8 0.26 5.7E-06 37.5 8.5 74 287-393 10-83 (83)
52 TIGR03096 nitroso_cyanin nitro 94.6 0.21 4.6E-06 41.7 8.0 62 51-130 59-120 (135)
53 PF13473 Cupredoxin_1: Cupredo 94.2 0.31 6.7E-06 38.8 7.9 60 52-129 34-93 (104)
54 TIGR03102 halo_cynanin halocya 94.1 0.35 7.6E-06 39.4 8.1 74 288-393 42-115 (115)
55 PF00116 COX2: Cytochrome C ox 93.5 0.85 1.8E-05 37.5 9.5 74 287-392 45-119 (120)
56 TIGR02866 CoxB cytochrome c ox 93.4 0.37 8E-06 43.4 8.0 75 287-395 116-193 (201)
57 PF06525 SoxE: Sulfocyanin (So 93.0 0.79 1.7E-05 40.6 9.0 97 289-395 87-188 (196)
58 TIGR03094 sulfo_cyanin sulfocy 92.4 1.3 2.8E-05 38.7 9.2 98 288-395 85-187 (195)
59 PF14344 DUF4397: Domain of un 88.8 6.9 0.00015 31.8 10.5 46 75-120 37-84 (122)
60 COG3794 PetE Plastocyanin [Ene 88.1 3.4 7.4E-05 34.2 8.0 73 289-393 55-127 (128)
61 COG1622 CyoA Heme/copper-type 86.7 2.7 5.9E-05 39.1 7.5 78 287-396 136-214 (247)
62 TIGR02656 cyanin_plasto plasto 84.7 3.5 7.5E-05 32.4 6.2 68 52-129 16-85 (99)
63 PF06525 SoxE: Sulfocyanin (So 84.1 4.3 9.4E-05 36.1 7.0 78 51-130 84-171 (196)
64 COG4454 Uncharacterized copper 80.8 4.2 9.1E-05 34.6 5.4 76 51-130 61-142 (158)
65 PF12690 BsuPI: Intracellular 79.5 25 0.00053 26.7 9.0 65 63-128 4-82 (82)
66 MTH00047 COX2 cytochrome c oxi 77.5 25 0.00053 31.5 9.7 76 288-395 116-192 (194)
67 MTH00140 COX2 cytochrome c oxi 76.2 11 0.00024 34.6 7.4 78 286-395 138-216 (228)
68 PF04151 PPC: Bacterial pre-pe 75.6 13 0.00029 26.8 6.4 65 53-129 5-69 (70)
69 PRK02888 nitrous-oxide reducta 73.9 21 0.00045 37.7 9.3 27 103-130 591-617 (635)
70 PF11142 DUF2917: Protein of u 70.0 16 0.00035 26.2 5.4 46 55-112 2-47 (63)
71 PF07691 PA14: PA14 domain; I 69.8 37 0.00079 28.1 8.7 64 54-122 53-123 (145)
72 PTZ00047 cytochrome c oxidase 68.6 23 0.00051 30.5 7.0 73 288-394 73-148 (162)
73 smart00758 PA14 domain in bact 68.0 49 0.0011 27.1 9.0 63 55-122 52-115 (136)
74 PF00116 COX2: Cytochrome C ox 67.9 65 0.0014 26.3 11.8 60 52-130 45-104 (120)
75 PRK02710 plastocyanin; Provisi 60.1 37 0.0008 27.6 6.6 60 52-129 46-105 (119)
76 TIGR02695 azurin azurin. Azuri 59.6 53 0.0011 27.1 7.1 68 54-124 17-106 (125)
77 COG1470 Predicted membrane pro 57.0 71 0.0015 32.4 8.9 75 52-133 388-470 (513)
78 PF00127 Copper-bind: Copper b 56.3 30 0.00065 27.0 5.3 65 51-130 15-86 (99)
79 TIGR01433 CyoA cytochrome o ub 55.0 39 0.00084 31.0 6.5 75 289-395 140-215 (226)
80 MTH00023 COX2 cytochrome c oxi 53.2 67 0.0015 29.7 7.8 77 287-395 150-227 (240)
81 MTH00008 COX2 cytochrome c oxi 52.2 67 0.0014 29.5 7.6 76 287-394 139-215 (228)
82 PF07705 CARDB: CARDB; InterP 50.4 1.1E+02 0.0024 23.1 9.5 66 56-130 14-83 (101)
83 PF08685 GON: GON domain; Int 49.6 22 0.00047 31.9 3.7 93 34-130 21-146 (201)
84 PF11614 FixG_C: IG-like fold 47.5 73 0.0016 25.6 6.4 49 61-118 33-83 (118)
85 MTH00185 COX2 cytochrome c oxi 44.4 1.2E+02 0.0025 28.0 7.9 77 286-394 138-215 (230)
86 MTH00038 COX2 cytochrome c oxi 44.4 96 0.0021 28.5 7.3 76 287-394 139-215 (229)
87 TIGR01432 QOXA cytochrome aa3 43.0 80 0.0017 28.7 6.5 75 289-395 131-206 (217)
88 MTH00098 COX2 cytochrome c oxi 42.8 1.1E+02 0.0024 28.1 7.4 76 287-394 139-215 (227)
89 PF08329 ChitinaseA_N: Chitina 40.2 57 0.0012 27.2 4.6 61 34-100 56-120 (133)
90 PF01835 A2M_N: MG2 domain; I 40.0 1.7E+02 0.0037 22.4 7.5 69 57-130 11-85 (99)
91 PF14392 zf-CCHC_4: Zinc knuck 39.9 35 0.00076 22.9 2.8 42 343-384 3-45 (49)
92 PF12690 BsuPI: Intracellular 39.1 31 0.00068 26.1 2.7 15 102-116 17-31 (82)
93 PF14524 Wzt_C: Wzt C-terminal 39.0 1.4E+02 0.0031 24.1 7.2 72 56-130 30-107 (142)
94 MTH00051 COX2 cytochrome c oxi 38.9 1.3E+02 0.0028 27.8 7.2 77 287-395 143-220 (234)
95 MTH00139 COX2 cytochrome c oxi 38.5 1.1E+02 0.0024 28.0 6.8 77 286-394 138-215 (226)
96 MTH00129 COX2 cytochrome c oxi 38.0 1.2E+02 0.0026 27.9 6.9 77 287-395 139-216 (230)
97 PRK10525 cytochrome o ubiquino 37.5 81 0.0018 30.5 5.9 73 289-393 152-225 (315)
98 PRK05461 apaG CO2+/MG2+ efflux 37.1 92 0.002 25.8 5.4 48 62-112 32-83 (127)
99 COG4263 NosZ Nitrous oxide red 36.7 1.3E+02 0.0028 30.6 7.1 41 352-392 594-635 (637)
100 MTH00076 COX2 cytochrome c oxi 36.2 1.6E+02 0.0034 27.1 7.4 76 287-394 139-215 (228)
101 MTH00117 COX2 cytochrome c oxi 36.0 1.5E+02 0.0033 27.1 7.3 76 287-394 139-215 (227)
102 MTH00154 COX2 cytochrome c oxi 35.9 1.4E+02 0.0031 27.3 7.1 76 287-394 139-215 (227)
103 TIGR02745 ccoG_rdxA_fixG cytoc 33.8 1.4E+02 0.003 30.4 7.1 51 61-119 348-399 (434)
104 PF14734 DUF4469: Domain of un 33.6 93 0.002 24.7 4.7 38 93-130 48-85 (102)
105 PF04379 DUF525: Protein of un 31.4 77 0.0017 24.5 3.8 48 62-112 15-66 (90)
106 MTH00080 COX2 cytochrome c oxi 31.3 1.7E+02 0.0038 26.9 6.8 77 287-395 142-219 (231)
107 TIGR02375 pseudoazurin pseudoa 30.5 2.9E+02 0.0064 22.3 7.7 76 51-153 13-88 (116)
108 PF06775 Seipin: Putative adip 30.4 71 0.0015 28.6 4.0 32 102-133 50-88 (199)
109 PF03459 TOBE: TOBE domain; I 29.7 36 0.00078 23.9 1.7 50 65-119 12-61 (64)
110 PRK09918 putative fimbrial cha 29.1 1.4E+02 0.003 27.4 5.8 21 51-71 74-94 (230)
111 PF10633 NPCBM_assoc: NPCBM-as 28.9 2.3E+02 0.005 20.7 7.6 64 58-130 2-75 (78)
112 MTH00168 COX2 cytochrome c oxi 27.7 1.9E+02 0.0041 26.5 6.4 76 287-394 139-215 (225)
113 TIGR02866 CoxB cytochrome c ox 27.7 4.4E+02 0.0095 23.4 9.3 59 53-130 117-175 (201)
114 TIGR03094 sulfo_cyanin sulfocy 27.2 4.4E+02 0.0096 23.3 8.5 93 52-153 84-186 (195)
115 PF15415 DUF4622: Protein of u 26.9 3.1E+02 0.0068 25.3 7.3 42 53-96 94-137 (310)
116 PF07228 SpoIIE: Stage II spor 26.3 1.6E+02 0.0035 25.4 5.6 54 56-110 68-126 (193)
117 PRK15195 fimbrial chaperone pr 25.9 98 0.0021 28.4 4.2 22 51-72 76-97 (229)
118 PF03633 Glyco_hydro_65C: Glyc 25.8 2.2E+02 0.0047 19.2 5.1 30 62-93 9-38 (54)
119 PRK15249 fimbrial chaperone pr 23.5 1.1E+02 0.0023 28.7 4.0 21 51-71 84-104 (253)
120 PF10989 DUF2808: Protein of u 23.2 96 0.0021 26.2 3.4 25 354-378 99-127 (146)
121 COG1470 Predicted membrane pro 22.6 3.6E+02 0.0078 27.6 7.5 36 97-132 321-360 (513)
122 PF13464 DUF4115: Domain of un 22.5 2.3E+02 0.0049 20.8 5.0 39 53-96 22-60 (77)
123 PRK09926 putative chaperone pr 22.2 1E+02 0.0022 28.6 3.6 22 51-72 80-101 (246)
124 TIGR00638 Mop molybdenum-pteri 22.1 1.2E+02 0.0026 21.3 3.3 47 68-119 17-63 (69)
125 PF11322 DUF3124: Protein of u 21.9 4.6E+02 0.0099 21.7 7.1 77 65-151 29-109 (125)
126 MTH00027 COX2 cytochrome c oxi 21.7 2.6E+02 0.0056 26.3 6.1 76 288-395 174-250 (262)
127 PF14874 PapD-like: Flagellar- 21.7 3.7E+02 0.008 20.5 9.5 64 56-127 15-83 (102)
128 PF14321 DUF4382: Domain of un 21.5 4.7E+02 0.01 21.6 7.3 61 53-119 61-123 (139)
129 PF14016 DUF4232: Protein of u 20.8 3.4E+02 0.0075 22.1 6.2 55 62-119 21-82 (131)
130 PRK03999 translation initiatio 20.7 4.9E+02 0.011 21.5 7.8 42 31-82 13-61 (129)
131 PF11906 DUF3426: Protein of u 20.1 4.6E+02 0.01 21.8 7.0 61 64-127 73-147 (149)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=8e-75 Score=595.11 Aligned_cols=402 Identities=54% Similarity=0.967 Sum_probs=315.0
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANH 83 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh 83 (412)
+|+|+||||++..+++..++..+..+.++|++|||||.+..++|+....+.|+|++||+|||||||+|+.+.+.|+||||
T Consensus 138 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH 217 (539)
T TIGR03389 138 PIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANH 217 (539)
T ss_pred EEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCC
Confidence 68999999999998887777777667789999999997777889887788999999999999999999999999999999
Q ss_pred cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCC
Q 036841 84 DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPL 163 (412)
Q Consensus 84 ~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 163 (412)
+|+|||+||.+++|+.+++|.|++||||||+|++++++|+||||+.+...|.+ .+.+....|||+|.++.... .+..
T Consensus 218 ~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~--~~~~~~~~ail~Y~~~~~~~-~p~~ 294 (539)
T TIGR03389 218 TLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPG--AFDNTTTTAILQYKGTSNSA-KPIL 294 (539)
T ss_pred eEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCcc--CCCCcceEEEEEECCCCCCC-CCCC
Confidence 99999999999999999999999999999999999988999999987644431 12356789999998864322 1222
Q ss_pred CCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccccccCCCch
Q 036841 164 PYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQSFVEPSPI 243 (412)
Q Consensus 164 p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~~~~~~~~~ 243 (412)
+..|.+++.+....+...++.+..+.+|..+|..+++++.+.+.+....... ..+...++..+.|.||+++|..| .+
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~w~in~~s~~~p-~~ 371 (539)
T TIGR03389 295 PTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN--NTCQGPNGTRFAASMNNISFVMP-TT 371 (539)
T ss_pred CCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc--cccccCCCcEEEEEECCcccCCC-Cc
Confidence 2233333322222222334444333334445556777777666543211000 00112245567899999999888 77
Q ss_pred hHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEE
Q 036841 244 AILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFF 323 (412)
Q Consensus 244 ~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~ 323 (412)
|+|.+.+.+++|.+..++++.+|++|+.++...+.++. .+.+.+++.+++|++|||+|+|........||||||||+||
T Consensus 372 p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~ 450 (539)
T TIGR03389 372 ALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLF-TTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFF 450 (539)
T ss_pred chhhhhhcccCCccccCCccCCCccccCCCCCcccccc-cccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceE
Confidence 78877766666776667888889888765543222332 23577889999999999999997422345899999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEeCCCCCCCCCC
Q 036841 324 VVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVKNGESPQERLL 403 (412)
Q Consensus 324 Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~~~~~ 403 (412)
||++|.|.|+.......+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.++++..+.++
T Consensus 451 Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~ 530 (539)
T TIGR03389 451 VVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLL 530 (539)
T ss_pred EEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccC
Confidence 99999999986544457899999999999999999999999999999999999999999999999999998888889999
Q ss_pred CCCCCCCCC
Q 036841 404 PPPPDVPPC 412 (412)
Q Consensus 404 ~~p~~~~~c 412 (412)
++|+.+|.|
T Consensus 531 ~~p~~~~~c 539 (539)
T TIGR03389 531 PPPSDLPSC 539 (539)
T ss_pred CCCccCCCC
Confidence 999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=7.3e-72 Score=569.42 Aligned_cols=381 Identities=28% Similarity=0.438 Sum_probs=297.0
Q ss_pred ceeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCC-CCCC----CCCceEEEEecCCEEEEEEEecccCceEE
Q 036841 3 TKKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDL-YPCS----SSETFTLTVDEGKTYLLRIINAAMDEMLF 77 (412)
Q Consensus 3 ~~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~-~~c~----~~~~~~~~v~~Gk~yRlRlINa~~~~~~~ 77 (412)
.+|+|+||||++..++ .+.+..|..+..+|++||||+ |+. ++|. +...+.++|++||+|||||||+++.+.+.
T Consensus 164 ~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~-g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~ 241 (596)
T PLN00044 164 ITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAF-GPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLN 241 (596)
T ss_pred eEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEccc-CccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEE
Confidence 4689999999987764 556677766678999999999 543 4664 23446899999999999999999999999
Q ss_pred EEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCc-eeEEEeecc-cccccccccCCccEEEEEEEcCCC
Q 036841 78 FSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPN-LYYMASSVY-STVVNLDFINNTTATAVLQYNGNY 155 (412)
Q Consensus 78 ~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g-~y~ir~~~~-~~~~~~~~~~~~~~~ail~y~~~~ 155 (412)
|+||||+|+|||+||.+++|+.++.|.|++||||||+|+++|+++ +||||+... ..+. .+++..+.|||+|.++.
T Consensus 242 fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~---~~~~~~~~AIl~Y~~~~ 318 (596)
T PLN00044 242 FRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA---VVDKLTGVAILHYSNSQ 318 (596)
T ss_pred EEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc---cccCcceeEEEEECCCC
Confidence 999999999999999999999999999999999999999999765 899998642 2222 14567889999998864
Q ss_pred CCCCCCCCCCCCC-CCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCc-ccCCCCCCCccCCCCceeeeeec
Q 036841 156 TPISSPPLPYLPS-RNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNT-LPCENDNNSCEGPNGTRLAASLN 233 (412)
Q Consensus 156 ~~~~~~~~p~~p~-~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~N 233 (412)
..... +.|..|. +.+.....++...++.+..++.+.+.|+..+....+.+.... ..+. .+..+ .| ++.|+||
T Consensus 319 ~~~~~-~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~---~g-~~~~s~N 392 (596)
T PLN00044 319 GPASG-PLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM-APELI---DG-KLRATLN 392 (596)
T ss_pred CCCCC-CCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc-ccccc---CC-eEEEEEC
Confidence 32111 1344443 555544444555565544433323344443433333332111 0000 00011 12 5789999
Q ss_pred cccccCCCchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCC
Q 036841 234 NQSFVEPSPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSH 313 (412)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~H 313 (412)
|++|..| .+|+|.+++.+.+|.+..++|+.+|... ....+.++.+++|++|||+|+|. ....|
T Consensus 393 nvsf~~p-~~p~L~a~~~~~~gv~~~~fp~~pp~~~-------------~~~~t~v~~~~~n~~VeiV~qn~---~~~~H 455 (596)
T PLN00044 393 EISYIAP-STPLMLAQIFNVPGVFKLDFPNHPMNRL-------------PKLDTSIINGTYKGFMEIIFQNN---ATNVQ 455 (596)
T ss_pred cccCCCC-CCcchhhhhccCCCcccCCCCCCCCccc-------------cccCceEEEcCCCCEEEEEEeCC---CCCCC
Confidence 9999999 7888888887888998888888877420 01467788999999999999996 35689
Q ss_pred ceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 314 PIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 314 p~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
|||||||+|+||++|.|.|+.+ ++..||+.||++|||+.|+++||++|||++||||.|+|||||++|+..||..+|.|.
T Consensus 456 P~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~ 534 (596)
T PLN00044 456 SYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVV 534 (596)
T ss_pred CeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEe
Confidence 9999999999999999999965 456899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCCCCCCCCC
Q 036841 394 NGESP-QERLLPPPPDVPPC 412 (412)
Q Consensus 394 ~~~~~-~~~~~~~p~~~~~c 412 (412)
++.+. .+++++||++++.|
T Consensus 535 ~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 535 NPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred cCCCCccccccCCCcccCcc
Confidence 98876 88999999999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.8e-71 Score=564.20 Aligned_cols=363 Identities=25% Similarity=0.361 Sum_probs=283.1
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCC-CCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcC
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGL-PAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIAN 82 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~-~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidg 82 (412)
+|+|+||||++..++ ...+..+.. +.++|++||||| ++. ..+.|+|++||+|||||||+|+.+.+.|+|+|
T Consensus 151 ~i~l~Dw~~~~~~~~-~~~~~~g~~~~~~~d~~liNG~-~~~------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~g 222 (536)
T PLN02792 151 TFLIGDWYRRNHTTL-KKILDGGRKLPLMPDGVMINGQ-GVS------YVYSITVDKGKTYRFRISNVGLQTSLNFEILG 222 (536)
T ss_pred EEEecccccCCHHHH-HHHhhccCcCCCCCCEEEEecc-CCC------CcceEEECCCCEEEEEEEEcCCCceEEEEECC
Confidence 689999999987764 445555543 448999999999 422 23789999999999999999999999999999
Q ss_pred ccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCC
Q 036841 83 HDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPP 162 (412)
Q Consensus 83 h~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 162 (412)
|+|+|||+||++++|..+++|.|++||||||+|++++++|+|||++.....+. +..+.|||+|.++.... +.
T Consensus 223 H~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~------~~~~~ail~Y~g~~~~~--~~ 294 (536)
T PLN02792 223 HQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA------KVLVSSTLHYSNSKGHK--II 294 (536)
T ss_pred cEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCC------CCceEEEEEECCCCCCC--CC
Confidence 99999999999999999999999999999999999998899999998653332 45788999998864321 11
Q ss_pred CCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcc--------eEEEEEeccCcccCCCCCCCccCCCCceeeeeecc
Q 036841 163 LPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDIT--------SSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNN 234 (412)
Q Consensus 163 ~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~ 234 (412)
.|..|.+++......+...++....+..|..+|+..+ +++.+..++. .+ + ....|+|||
T Consensus 295 ~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---------~~---~-~~~~~~iN~ 361 (536)
T PLN02792 295 HARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA---------LV---K-RKQRYAING 361 (536)
T ss_pred CCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEeccccc---------cc---C-ceeEEEECC
Confidence 2233434444333222222333333222334443322 2222221111 01 2 246789999
Q ss_pred ccccCCCchhHHHHHHhhccccccCC-CCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCC
Q 036841 235 QSFVEPSPIAILEAYYERINGVYGEN-FPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSH 313 (412)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~H 313 (412)
.+|..| .+|+|.+++.++.|.+..+ +++.+|..++. ...+.++.+++|++|||+|+|. ....|
T Consensus 362 ~s~~~p-~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~------------~~~~~v~~~~~~~~VeiViqn~---~~~~H 425 (536)
T PLN02792 362 VSFVPS-DTPLKLADHFKIKGVFKVGSIPDKPRRGGGM------------RLDTSVMGAHHNAFLEIIFQNR---EKIVQ 425 (536)
T ss_pred cccCCC-CCchhhhhhhccCCCcCcccCccCCcccCCC------------ccCceEEEcCCCCEEEEEEECC---CCCCC
Confidence 999998 7888887776777776543 67666643221 1456788999999999999997 45689
Q ss_pred ceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 314 PIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 314 p~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
|||||||+||||++|.|.|++. .+..||+.||++|||+.|+++||++|||++||||+|+||||+.+|+..||+.+|.|.
T Consensus 426 P~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~ 504 (536)
T PLN02792 426 SYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVY 504 (536)
T ss_pred CeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEc
Confidence 9999999999999999999864 456899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 036841 394 NGESPQERLLPPPPDVPPC 412 (412)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~c 412 (412)
++.+..+++++||++.+.|
T Consensus 505 ~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 505 SPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred cCCCccccccCCCcccCcc
Confidence 9999999999999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.1e-70 Score=555.72 Aligned_cols=359 Identities=29% Similarity=0.433 Sum_probs=275.1
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANH 83 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh 83 (412)
+|+|+||||++..++.. .+..+..++++|++||||| + ..+.++|++||+|||||||+|+.+.+.|+|+||
T Consensus 163 ~i~l~DW~~~~~~~~~~-~~~~~~~~~~~d~~liNG~-~--------~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 232 (543)
T PLN02991 163 TVLIGDWYKTNHKDLRA-QLDNGGKLPLPDGILINGR-G--------SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNH 232 (543)
T ss_pred EEEecceecCCHHHHHH-HhhcCCCCCCCCEEEEccC-C--------CCceEEECCCCEEEEEEEeccCCeeEEEEECCC
Confidence 68899999998777543 4456666789999999999 3 136799999999999999999999999999999
Q ss_pred cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCC
Q 036841 84 DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPL 163 (412)
Q Consensus 84 ~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 163 (412)
+|+|||+||.+++|..++.|.|++||||||+|++++++|+||||+...... ......|||+|+++..... .+.
T Consensus 233 ~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~------~~~~~~AIl~Y~g~~~~~~-~~~ 305 (543)
T PLN02991 233 TMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS------KILITTGVLHYSNSAGPVS-GPI 305 (543)
T ss_pred EEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC------CCcceEEEEEeCCCCCCCC-CCC
Confidence 999999999999999999999999999999999999989999999764332 2456899999988643211 112
Q ss_pred CCCCCCCCccchhhhhhhcccCCCCCCCCCCCCC--------cceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccc
Q 036841 164 PYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLD--------ITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQ 235 (412)
Q Consensus 164 p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~ 235 (412)
|..|. +......+....+....+..+...|.. .++++.+..+++. + +| .+.|+|||.
T Consensus 306 p~~p~--~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---------~---~g-~~~~~iN~~ 370 (543)
T PLN02991 306 PDGPI--QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGN---------I---EG-KQRYAVNSA 370 (543)
T ss_pred CCCCc--cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccc---------c---Cc-eEEEEECCC
Confidence 22221 111111111111111111111222222 2233333221111 1 22 467999999
Q ss_pred cccCCCchhHHHHHHhhccccccCC-CCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCc
Q 036841 236 SFVEPSPIAILEAYYERINGVYGEN-FPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHP 314 (412)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp 314 (412)
+|..| .+|+|.+++.+.+|.+..+ +++.+|.. . ......++.+++|++|||+|+|. ....||
T Consensus 371 s~~~p-~~p~L~~~~~~~~g~~~~~~~~~~~~~~-----~--------~~~~~~v~~~~~~~~VeiViqn~---~~~~HP 433 (543)
T PLN02991 371 SFYPA-DTPLKLADYFKIAGVYNPGSIPDQPTNG-----A--------IFPVTSVMQTDYKAFVEIVFENW---EDIVQT 433 (543)
T ss_pred ccCCC-CCChhhhhhhcccCccccccccccCCCC-----c--------cccCCcEEEcCCCCEEEEEEeCC---CCCCCC
Confidence 99987 7888888777778877544 44443310 0 01345678999999999999997 456899
Q ss_pred eeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEeC
Q 036841 315 IHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVKN 394 (412)
Q Consensus 315 ~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~ 394 (412)
||||||+||||++|.|.|+.. +...||+.||++|||+.||++||++|||++||||.|+|||||.+|+..||+.++.|.+
T Consensus 434 ~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~ 512 (543)
T PLN02991 434 WHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYT 512 (543)
T ss_pred eeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecC
Confidence 999999999999999999876 4568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 036841 395 GESPQERLLPPPPDVPPC 412 (412)
Q Consensus 395 ~~~~~~~~~~~p~~~~~c 412 (412)
+.+..+.++++|.+.+.|
T Consensus 513 ~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 513 TSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCCccccccCCCcccCcc
Confidence 999999999999999999
No 5
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.9e-70 Score=549.02 Aligned_cols=389 Identities=48% Similarity=0.815 Sum_probs=330.7
Q ss_pred eeEEcccCCC-ChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcC
Q 036841 4 KKNVGEWWKQ-DVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIAN 82 (412)
Q Consensus 4 ~i~l~Dw~h~-~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidg 82 (412)
+|+|+|||++ ....+...+..++..+..+|..+|||+.|..++| .+.++|++||+|||||||+|....+.|+|++
T Consensus 163 ~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~ 238 (563)
T KOG1263|consen 163 TILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIAN 238 (563)
T ss_pred EEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECC
Confidence 6899999996 8888767666666666669999999999899999 5899999999999999999999999999999
Q ss_pred ccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCC--
Q 036841 83 HDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISS-- 160 (412)
Q Consensus 83 h~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~-- 160 (412)
|+|+|||+||.+++|..+++|.|+|||||||+|+++|.+++|+|+++++..+.. ..+ +....++|+|.+.......
T Consensus 239 H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~-~~~-~~t~~~~l~y~~~~~~~s~~~ 316 (563)
T KOG1263|consen 239 HQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASN-VPF-NLTTTGILRYSGSTHPASEKL 316 (563)
T ss_pred eEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCC-cce-eeeEEEEEEEeCCcccCcccC
Confidence 999999999999999999999999999999999999998999999988766531 223 7889999999985433221
Q ss_pred CCCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccccccCC
Q 036841 161 PPLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQSFVEP 240 (412)
Q Consensus 161 ~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~~~~~~ 240 (412)
+..+.+|...+...+..+...++.+.....+.++|+..+..+.+.++.+...+.. ...++.+..++||+++|+.|
T Consensus 317 ~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~siN~isf~~P 391 (563)
T KOG1263|consen 317 PIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNS-----DNKNNGKLRASINNISFVTP 391 (563)
T ss_pred cccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccC-----CCCCCcEEEEEEcceEEECC
Confidence 2233455556666666777788888777777788888887777766665544321 11345677899999999999
Q ss_pred CchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCc
Q 036841 241 SPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGY 320 (412)
Q Consensus 241 ~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~ 320 (412)
+...++.+++....|.+..++|+.||..|+.++ .|.++.+..+++++.||++|+|.+......||||||||
T Consensus 392 ~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~---------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~ 462 (563)
T KOG1263|consen 392 KTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG---------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGY 462 (563)
T ss_pred CCchhhhhhhccCCccccCccCCCCccccCCcc---------ccccceEEEeecCCEEEEEEeCCccccCCCCccceece
Confidence 555667788888888888889999888776654 24788999999999999999999765677799999999
Q ss_pred eEEEEeecCCCCCCCCCC-CCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEeCCCCCC
Q 036841 321 SFFVVGFGFGNFDEEKDP-LNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVKNGESPQ 399 (412)
Q Consensus 321 ~F~Vl~~g~g~~~~~~~~-~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~ 399 (412)
+||||+.|.|.|++..++ ..+|+.+|+.||||.|||+||++|||.|||||.|+||||+++|+..||.++|.|.++++..
T Consensus 463 ~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~ 542 (563)
T KOG1263|consen 463 NFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESL 542 (563)
T ss_pred EEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccC
Confidence 999999999999985455 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 036841 400 ERLLPPPPDVPPC 412 (412)
Q Consensus 400 ~~~~~~p~~~~~c 412 (412)
+++.++|++.+.|
T Consensus 543 ~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 543 SSEYPPPKNLPKC 555 (563)
T ss_pred CcCCCCCCCcccc
Confidence 9999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=5.4e-69 Score=548.57 Aligned_cols=367 Identities=28% Similarity=0.416 Sum_probs=273.7
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANH 83 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh 83 (412)
+|+|+||||+...++ ..++..+..++.+|++||||+.+..+. ...+.++|++||+|||||||+|+...+.|+||||
T Consensus 162 ~l~l~Dw~~~~~~~~-~~~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH 237 (552)
T PLN02354 162 TVLIGDWYTKSHTAL-KKFLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGH 237 (552)
T ss_pred EEEeeeeccCCHHHH-HHHHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCc
Confidence 689999999987775 445566655677999999999543321 2357899999999999999999999999999999
Q ss_pred cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCC
Q 036841 84 DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPL 163 (412)
Q Consensus 84 ~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 163 (412)
+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+ .+....|||+|+++.... .+..
T Consensus 238 ~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~------~~~~~~ail~Y~g~~~~~-~~~~ 310 (552)
T PLN02354 238 KMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK------KVLTTTGIIRYEGGKGPA-SPEL 310 (552)
T ss_pred eEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC------CCccEEEEEEECCCCCCC-CCCC
Confidence 999999999999999999999999999999999999889999998743222 246789999998864322 1122
Q ss_pred CCCCCCCCccchh----hhhhhcccCCCCCCCCCC----CCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccc
Q 036841 164 PYLPSRNDTNSAF----QFIGSLRSLANEDHPIDV----PLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQ 235 (412)
Q Consensus 164 p~~p~~~~~~~~~----~~~~~l~~~~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~ 235 (412)
|..|. +..... .+...+......+.+... ....++++.+...+.. .+| ...|.+||+
T Consensus 311 p~~~~--~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g-~~~~~iNn~ 375 (552)
T PLN02354 311 PEAPV--GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------------VDG-KLRYALNGV 375 (552)
T ss_pred CCCCc--ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc------------CCc-eEEEEECCc
Confidence 22111 110011 111111111101111000 0123344444332111 022 467899999
Q ss_pred cccCCCchhHHHHHHhhc-cccccCC-CCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCC
Q 036841 236 SFVEPSPIAILEAYYERI-NGVYGEN-FPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSH 313 (412)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~-~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~H 313 (412)
+|..| .+|+|.+.+.++ +|.+..+ +++.+|..++. .+.+.+++.+++|++|||+|+|. ....|
T Consensus 376 s~~~p-~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~-----------~~~~~~v~~~~~~~~VeiVi~n~---~~~~H 440 (552)
T PLN02354 376 SHVDP-ETPLKLAEYFGVADKVFKYDTIKDNPPAKITK-----------IKIQPNVLNITFRTFVEIIFENH---EKSMQ 440 (552)
T ss_pred cCCCC-CCChHHhhhhcccCCccccCccccCCccccCc-----------cccCCeeEEcCCCCEEEEEEeCC---CCCCC
Confidence 99988 778877765444 3655433 34444433221 12566788999999999999997 45689
Q ss_pred ceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 314 PIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 314 p~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
|||||||+||||++|.|.|+.+ ....+|+.||++|||+.||++||++|||++||||+|+|||||+.|+..||..+|.|.
T Consensus 441 P~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~ 519 (552)
T PLN02354 441 SWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVL 519 (552)
T ss_pred CCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEe
Confidence 9999999999999999999865 356789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 036841 394 NGESPQERLLPPPPDVPPC 412 (412)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~c 412 (412)
.+.+..++++++|++.+.|
T Consensus 520 ~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 520 SPERSLRDEYNMPENALLC 538 (552)
T ss_pred CCccccCcCCCCCcccccc
Confidence 8888888888999999999
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.4e-68 Score=544.78 Aligned_cols=360 Identities=30% Similarity=0.413 Sum_probs=269.5
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANH 83 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh 83 (412)
+|+|+||||++..++. ..+..|..++++|++||||+.. +.++|++||+|||||||+|+.+.+.|+|+||
T Consensus 164 ~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH 232 (539)
T PLN02835 164 TLLVGDWYKTSHKTLQ-QRLDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGH 232 (539)
T ss_pred EEEeeccccCCHHHHH-HHhhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCC
Confidence 6899999999987754 4456666678899999999953 6899999999999999999999999999999
Q ss_pred cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCC
Q 036841 84 DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPL 163 (412)
Q Consensus 84 ~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 163 (412)
+|+|||+||++++|..++.|.|++||||||+|++++++|+||||+.....+. +....|||+|+++..+. +.+.
T Consensus 233 ~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~------~~~~~ail~Y~~~~~~~-~~~~ 305 (539)
T PLN02835 233 TMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQ------ILTATAVLHYSNSRTPA-SGPL 305 (539)
T ss_pred EEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCC------CcceEEEEEECCCCCCC-CCCC
Confidence 9999999999999999999999999999999999998899999986432222 45689999998864321 1122
Q ss_pred CCCCCCC---CccchhhhhhhcccCCCCCCCCC----CCCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeecccc
Q 036841 164 PYLPSRN---DTNSAFQFIGSLRSLANEDHPID----VPLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQS 236 (412)
Q Consensus 164 p~~p~~~---~~~~~~~~~~~l~~~~~~~~p~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~~ 236 (412)
|..|... +......+...+.+....+.+.. ....+++++.+...+.. .+| ...|++||++
T Consensus 306 p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g-~~~w~iN~~s 372 (539)
T PLN02835 306 PALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL------------ING-KQRYAVNGVS 372 (539)
T ss_pred CCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc------------cCC-eEEEEECCcc
Confidence 3222211 00000000001111100000000 00122444444321110 122 3679999999
Q ss_pred ccCCCchhHHHHHHhhccccccCCC-CCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCce
Q 036841 237 FVEPSPIAILEAYYERINGVYGENF-PDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPI 315 (412)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~ 315 (412)
|..| .+|+|.+.+.+.+|.+..+. +..++ +. ..+.++.++.+++|++|||+|+|. ....|||
T Consensus 373 ~~~p-~~P~L~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~t~~~~~~~~~~Veivi~N~---~~~~HP~ 435 (539)
T PLN02835 373 YVNS-DTPLKLADYFGIPGVFSVNSIQSLPS------------GG-PAFVATSVMQTSLHDFLEVVFQNN---EKTMQSW 435 (539)
T ss_pred cCCC-CCChhhhhhhcCCCccccCccccCCC------------CC-ccccCCeEEEcCCCCEEEEEEECC---CCCCCCC
Confidence 9887 67777666655555543221 11111 11 123567889999999999999997 4668999
Q ss_pred eecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 316 HLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 316 HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
|||||+||||++|.|.|+.. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||+++|.|+++
T Consensus 436 HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 436 HLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQ 514 (539)
T ss_pred CCCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccC
Confidence 99999999999999988764 34567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCC
Q 036841 396 ESPQERLLPPPPDVPPC 412 (412)
Q Consensus 396 ~~~~~~~~~~p~~~~~c 412 (412)
.+..+.++++|.++|.|
T Consensus 515 ~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 515 VHSLANEYDIPDNALLC 531 (539)
T ss_pred CCccccccCCCcccccc
Confidence 99999999999999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.5e-67 Score=535.74 Aligned_cols=362 Identities=29% Similarity=0.464 Sum_probs=264.0
Q ss_pred eeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANH 83 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh 83 (412)
.|+|+||||.+..++. ..+..+...+++|++||||+.. ..++++|++||+|||||||+|+.+.+.|+||||
T Consensus 161 ~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH 231 (545)
T PLN02168 161 DILIGDWFYADHTVMR-ASLDNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDH 231 (545)
T ss_pred eEEEEecCCCCHHHHH-hhhhcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCc
Confidence 5889999999866543 3445554456899999999932 236899999999999999999999999999999
Q ss_pred cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCC----ceeEEEeecccccccccccCCccEEEEEEEcCCCCCCC
Q 036841 84 DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNP----NLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPIS 159 (412)
Q Consensus 84 ~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~----g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~ 159 (412)
+|+|||+||.+++|..++.|.|++||||||+|++++.. ++||||+.....+. ...+.|||+|+++....
T Consensus 232 ~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~------~~~~~ail~Y~~~~~~~- 304 (545)
T PLN02168 232 DMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA------YLGGVALIRYPNSPLDP- 304 (545)
T ss_pred EEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC------CcceEEEEEECCCCCCC-
Confidence 99999999999999999999999999999999998643 48999998643332 46688999998764321
Q ss_pred CCCCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCC--------CcceEEEEEeccCcccCCCCCCCccCCCCceeeee
Q 036841 160 SPPLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPL--------DITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAAS 231 (412)
Q Consensus 160 ~~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 231 (412)
..+.+..|.+.+.....++..+++....+..+..+|. ..++++.+.... . . .+| ...|+
T Consensus 305 ~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~-------~---~~g-~~~~~ 371 (545)
T PLN02168 305 VGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M-------L---SSG-KLRYT 371 (545)
T ss_pred CCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c-------c---cCc-eEEEE
Confidence 1123333433333222222222222111111112221 122333222110 0 0 122 46799
Q ss_pred eccccccCCCchhHHHHHHhhccccccCC-CCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCC
Q 036841 232 LNNQSFVEPSPIAILEAYYERINGVYGEN-FPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAG 310 (412)
Q Consensus 232 ~N~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~ 310 (412)
|||++|..| .+|+|.+.+.+.++.+..+ ++..+|.. . ....+.++.+++|++|||+|+|. ..
T Consensus 372 iN~~s~~~p-~~P~l~~~~~~~~~~~~~~~~~~~p~~~-----------~--~~~~~~v~~~~~~~~VeiViqn~---~~ 434 (545)
T PLN02168 372 INGVSFVYP-GTPLKLVDHFQLNDTIIPGMFPVYPSNK-----------T--PTLGTSVVDIHYKDFYHIVFQNP---LF 434 (545)
T ss_pred ECCCccCCC-CCchhhhhhcccccccccCCCccCCCcC-----------c--cccCceEEEecCCCEEEEEEeCC---CC
Confidence 999999988 6777766555444433222 34333310 0 01346788999999999999997 45
Q ss_pred CCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEE
Q 036841 311 TSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVF 390 (412)
Q Consensus 311 ~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~ 390 (412)
..||||||||+||||++|.|.|+... ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||..++
T Consensus 435 ~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~ 513 (545)
T PLN02168 435 SLESYHIDGYNFFVVGYGFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYM 513 (545)
T ss_pred CCCCeeeCCCceEEEECCCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEE
Confidence 68999999999999999999998653 45789999999999999999999999999999999999999988888888888
Q ss_pred EEeCCCC------CCCCCCCCCCCCCCC
Q 036841 391 IVKNGES------PQERLLPPPPDVPPC 412 (412)
Q Consensus 391 ~V~~~~~------~~~~~~~~p~~~~~c 412 (412)
+|+++.. ..+.++++|++++.|
T Consensus 514 ~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 514 RVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred EEEcccccCccccccccccCCChhhccc
Confidence 8864433 367789999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.7e-66 Score=534.84 Aligned_cols=377 Identities=32% Similarity=0.525 Sum_probs=266.5
Q ss_pred eeEEcccCCCChHHHHHHHHhc-CCCCCCCceEEEcCccCCCCCCCC-----------------CCceEEEEecCCEEEE
Q 036841 4 KKNVGEWWKQDVTEVRNELLRT-GGLPAASDAFTINGQPGDLYPCSS-----------------SETFTLTVDEGKTYLL 65 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~-g~~~~~~d~~lING~~g~~~~c~~-----------------~~~~~~~v~~Gk~yRl 65 (412)
+|+|+||||++..+++...... .....++|++||||+ |+ +.|+. ..++.++|++||+|||
T Consensus 159 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~Rl 236 (566)
T PLN02604 159 SIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGK-GR-YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRL 236 (566)
T ss_pred EEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCC-CC-CCCccccCccccccccccCCCCCCceEEEecCCCEEEE
Confidence 6899999999987765543221 112257899999999 64 45531 1345899999999999
Q ss_pred EEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCc-eeEEEeecccccccccccCCcc
Q 036841 66 RIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPN-LYYMASSVYSTVVNLDFINNTT 144 (412)
Q Consensus 66 RlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g-~y~ir~~~~~~~~~~~~~~~~~ 144 (412)
||||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++||||||+|++++.+| +||||+.....+. +...
T Consensus 237 RlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~-----~~~~ 311 (566)
T PLN02604 237 RISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN-----TTPP 311 (566)
T ss_pred EEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC-----CCcc
Confidence 999999999999999999999999999999999999999999999999999998764 8999987654432 2467
Q ss_pred EEEEEEEcCCCCCCCCCCC-CCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCccCC
Q 036841 145 ATAVLQYNGNYTPISSPPL-PYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSCEGP 223 (412)
Q Consensus 145 ~~ail~y~~~~~~~~~~~~-p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (412)
++|||+|++......++.. +..+.+++..........++.+.. .+...+...++++.+....+. .
T Consensus 312 ~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~ 377 (566)
T PLN02604 312 GLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------V 377 (566)
T ss_pred eeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------c
Confidence 8999999865322111111 111122221111111111111111 111233455677665432211 0
Q ss_pred CCceeeeeeccccccCCCchhHHHHHHhhccccccCCCCCCCCccccCCC---CCCCCCccCCCCCceEEEeeCCCEEEE
Q 036841 224 NGTRLAASLNNQSFVEPSPIAILEAYYERINGVYGENFPDFPPYLFNFTA---DDLPTILQIPEQGTEVKVLDYDSAVEI 300 (412)
Q Consensus 224 ~g~~~~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~v~~ 300 (412)
+ ..+.|.||+.+|..| ..|+|.+.+.+..|.++.+ .+|..+.... .....+ ...+.+..++.++.|++||+
T Consensus 378 ~-~~~~w~in~~~~~~p-~~p~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~Vdi 451 (566)
T PLN02604 378 N-GYRRWSVNNVSFNLP-HTPYLIALKENLTGAFDQT---PPPEGYDFANYDIYAKPNN-SNATSSDSIYRLQFNSTVDI 451 (566)
T ss_pred C-CeEEEEECcccCCCC-CCchhHhhhhcCCCcccCC---CCCcccccccccccCCccc-cccccCceEEEccCCCeEEE
Confidence 1 246799999999887 5666665554444554311 1121111000 000000 01225677899999999999
Q ss_pred EEecCCcC---CCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEee
Q 036841 301 NFQGTNLV---AGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCH 377 (412)
Q Consensus 301 ~l~n~~~~---~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCH 377 (412)
+|+|.... ....||||||||+||||++|.|.|+...+...+|+.||++|||+.|+++||++|||++||||.|+||||
T Consensus 452 vi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCH 531 (566)
T PLN02604 452 ILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCH 531 (566)
T ss_pred EEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeec
Confidence 99997421 246799999999999999999999876556789999999999999999999999999999999999999
Q ss_pred hhHhHhcCceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 036841 378 REEHLTWGMKTVFIVKNGESPQERLLPPPPDVPPC 412 (412)
Q Consensus 378 i~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 412 (412)
|+||+..||+++|.+. .+.++.+|.+++.|
T Consensus 532 I~~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 532 IESHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred chhHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 9999999999999763 46777899999999
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.7e-66 Score=531.73 Aligned_cols=377 Identities=31% Similarity=0.511 Sum_probs=264.6
Q ss_pred eeEEcccCCCChHHHHHHHHhcC-CCCCCCceEEEcCccCCCCCCCCC-------------------CceEEEEecCCEE
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTG-GLPAASDAFTINGQPGDLYPCSSS-------------------ETFTLTVDEGKTY 63 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g-~~~~~~d~~lING~~g~~~~c~~~-------------------~~~~~~v~~Gk~y 63 (412)
+|+|+||||+...+.+....... ....++|++||||| |+ +.|... .+..|+|++||+|
T Consensus 136 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 213 (541)
T TIGR03388 136 NLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGR-GQ-FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTY 213 (541)
T ss_pred EEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCC-CC-CCCccccccCccccchhhccCCCCCCceEEEECCCCEE
Confidence 68999999998876544332211 12257899999999 64 345321 2346999999999
Q ss_pred EEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCC-ceeEEEeecccccccccccCC
Q 036841 64 LLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNP-NLYYMASSVYSTVVNLDFINN 142 (412)
Q Consensus 64 RlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~-g~y~ir~~~~~~~~~~~~~~~ 142 (412)
||||||+|+.+.+.|+||||+|+|||+||++++|+.++.|.|++||||||+|++++.+ |+||||+.....+. ..
T Consensus 214 RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~-----~~ 288 (541)
T TIGR03388 214 RLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP-----NT 288 (541)
T ss_pred EEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC-----CC
Confidence 9999999999999999999999999999999999999999999999999999999865 58999987654422 24
Q ss_pred ccEEEEEEEcCCCCCCCC-CCCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCcc
Q 036841 143 TTATAVLQYNGNYTPISS-PPLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSCE 221 (412)
Q Consensus 143 ~~~~ail~y~~~~~~~~~-~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (412)
..++|||+|.+......+ .+.+..|.+.+......+ .+..+..... ...+..+++++.+......
T Consensus 289 ~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 354 (541)
T TIGR03388 289 PPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAF--SLAIKAAMGS-PKPPETSDRRIVLLNTQNK----------- 354 (541)
T ss_pred ccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhcc--chhhhccccC-CCCCCCCCcEEEEeccCcc-----------
Confidence 568899999875432211 111223333332211111 1111110011 1233456777665432110
Q ss_pred CCCCceeeeeeccccccCCCchhHHHHHHhhccccccCCCC-CCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEE
Q 036841 222 GPNGTRLAASLNNQSFVEPSPIAILEAYYERINGVYGENFP-DFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEI 300 (412)
Q Consensus 222 ~~~g~~~~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 300 (412)
.+....|.||+++|..| ..|+|.+.+.+..+.+..+.+ ...+..|+.. ..+..+ ..|.+..++.++.|++||+
T Consensus 355 --~~~~~~~~~n~~s~~~p-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~Vdi 428 (541)
T TIGR03388 355 --INGYTKWAINNVSLTLP-HTPYLGSLKYNLLNAFDQKPPPENYPRDYDIF--KPPPNP-NTTTGNGIYRLKFNTTVDV 428 (541)
T ss_pred --cCceEEEEECcccCCCC-CccHHHHHhhcCCccccCCCCccccccccccc--CCCccc-ccccCceEEEecCCCeEEE
Confidence 11235689999999877 566666544333333221110 0001111110 001111 1246778899999999999
Q ss_pred EEecCCcC---CCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEee
Q 036841 301 NFQGTNLV---AGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCH 377 (412)
Q Consensus 301 ~l~n~~~~---~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCH 377 (412)
+|+|...+ ....||||||||+||||++|.|.|+.+.....+|+.||++|||+.|+++||++|||++||||.|+||||
T Consensus 429 vi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCH 508 (541)
T TIGR03388 429 ILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCH 508 (541)
T ss_pred EEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeecc
Confidence 99996421 246799999999999999999999865445679999999999999999999999999999999999999
Q ss_pred hhHhHhcCceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 036841 378 REEHLTWGMKTVFIVKNGESPQERLLPPPPDVPPC 412 (412)
Q Consensus 378 i~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 412 (412)
|+||+..||+++|.+. .++++.+|..++.|
T Consensus 509 i~~H~~~GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 509 IEPHLHMGMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred chhhhhcccEEEEecc-----ccccCCCCccccCC
Confidence 9999999999999753 46777899999999
No 11
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.6e-66 Score=531.33 Aligned_cols=377 Identities=28% Similarity=0.493 Sum_probs=259.4
Q ss_pred eeEEcccCCCChHHHHHHHHhc-CCCCCCCceEEEcCccCCCCCCCC--------------------CCceEEEEecCCE
Q 036841 4 KKNVGEWWKQDVTEVRNELLRT-GGLPAASDAFTINGQPGDLYPCSS--------------------SETFTLTVDEGKT 62 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~-g~~~~~~d~~lING~~g~~~~c~~--------------------~~~~~~~v~~Gk~ 62 (412)
+|+|+||||+...+........ .....++|++||||| |+ +.|.. ..+.+|+|++||+
T Consensus 158 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~ 235 (574)
T PLN02191 158 NLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGR-GQ-FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKT 235 (574)
T ss_pred EEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCC-CC-CCCcccccccCCcccccceeccCCCCCceEEEEcCCCE
Confidence 5889999999766543322111 112367899999999 64 44531 1234799999999
Q ss_pred EEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCC-ceeEEEeecccccccccccC
Q 036841 63 YLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNP-NLYYMASSVYSTVVNLDFIN 141 (412)
Q Consensus 63 yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~-g~y~ir~~~~~~~~~~~~~~ 141 (412)
|||||||+|+.+.+.|+||||+|+|||+||++++|+++++|.|++||||||+|++++++ ++||||+.....+. .
T Consensus 236 yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~-----~ 310 (574)
T PLN02191 236 YRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP-----N 310 (574)
T ss_pred EEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC-----C
Confidence 99999999999999999999999999999999999999999999999999999999975 58999997644332 2
Q ss_pred CccEEEEEEEcCCCCCCCCC-CCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCc
Q 036841 142 NTTATAVLQYNGNYTPISSP-PLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSC 220 (412)
Q Consensus 142 ~~~~~ail~y~~~~~~~~~~-~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (412)
.....|||+|.+......+. ..+..|.+.+......+...+ +.....+.......++++.+... ..
T Consensus 311 ~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~--~~--------- 377 (574)
T PLN02191 311 TTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKI--FSAMGSPSPPKKYRKRLILLNTQ--NL--------- 377 (574)
T ss_pred CCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccc--cccccCCCCCCcccceEEEeccc--ce---------
Confidence 33457999998765422111 111123333322111111111 11000111111123444444221 10
Q ss_pred cCCCCceeeeeeccccccCCCchhHHHHHHhhccccccCCCCCCC-CccccCCCCCCCCCccCCCCCceEEEeeCCCEEE
Q 036841 221 EGPNGTRLAASLNNQSFVEPSPIAILEAYYERINGVYGENFPDFP-PYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVE 299 (412)
Q Consensus 221 ~~~~g~~~~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 299 (412)
.+ ....|.+|+.+|..| ..|+|.+.+.+..+.+..+.+... +..|+.... ..+...+.+.+++.++.|++||
T Consensus 378 --~~-~~~~~~~n~~s~~~p-~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~Vd 450 (574)
T PLN02191 378 --ID-GYTKWAINNVSLVTP-ATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNP---PPFPNTTTGNGIYVFPFNVTVD 450 (574)
T ss_pred --eC-CeEEEEECcccCcCC-CcchHHHHhhccCcccccCCCcccccccccccCC---CccccccccceeEEecCCCEEE
Confidence 01 234689999999887 666666544444444333333221 212221110 1111123566789999999999
Q ss_pred EEEecCCcC---CCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEe
Q 036841 300 INFQGTNLV---AGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHC 376 (412)
Q Consensus 300 ~~l~n~~~~---~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HC 376 (412)
|+|+|.+.. ....||||||||+||||++|.|.|+++.....+|+.||++|||+.|+++||++|||++||||.|+|||
T Consensus 451 ivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HC 530 (574)
T PLN02191 451 VIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHC 530 (574)
T ss_pred EEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEec
Confidence 999997311 25689999999999999999999987544457899999999999999999999999999999999999
Q ss_pred ehhHhHhcCceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 036841 377 HREEHLTWGMKTVFIVKNGESPQERLLPPPPDVPPC 412 (412)
Q Consensus 377 Hi~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 412 (412)
||+||+..||+++|... .+.++.+|..++.|
T Consensus 531 Hi~~Hl~~Gm~~~~~e~-----~~~~~~~p~~~~~C 561 (574)
T PLN02191 531 HIEPHLHMGMGVVFAEG-----LNRIGKIPDEALGC 561 (574)
T ss_pred CchhhhhcCCEEEEecC-----hhhccCCCcchhhh
Confidence 99999999999999642 34555678888888
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.7e-62 Score=500.87 Aligned_cols=359 Identities=27% Similarity=0.445 Sum_probs=250.5
Q ss_pred eeEEcccCCCChHHHHHHHHhcC-CCCCCCceEEEcCccCCCCCCC-------CCCceEEEEecCCEEEEEEEecccCce
Q 036841 4 KKNVGEWWKQDVTEVRNELLRTG-GLPAASDAFTINGQPGDLYPCS-------SSETFTLTVDEGKTYLLRIINAAMDEM 75 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~g-~~~~~~d~~lING~~g~~~~c~-------~~~~~~~~v~~Gk~yRlRlINa~~~~~ 75 (412)
+|+|+||||+...++...+.... ....++|++|||||.+ ...|. ....+.++|++||+|||||||+|+.+.
T Consensus 142 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~-~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~ 220 (538)
T TIGR03390 142 ILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSG-NKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSL 220 (538)
T ss_pred EEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccc-cccccccccCCCCCcceEEEECCCCEEEEEEEccCCceE
Confidence 68999999999888765543322 2245789999999943 22211 113478999999999999999999999
Q ss_pred EEEEEcCcc-EEEEeeCCCccCceEEeEEEECCCceEEEEEEecCC-------CceeEEEeecccccccccccCCccEEE
Q 036841 76 LFFSIANHD-LTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQN-------PNLYYMASSVYSTVVNLDFINNTTATA 147 (412)
Q Consensus 76 ~~~sidgh~-m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~-------~g~y~ir~~~~~~~~~~~~~~~~~~~a 147 (412)
+.|+||||+ |+|||+||.+++|+.++.|.|++||||||+|++++. +|+||||+.....+. .....|
T Consensus 221 ~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~------~~~~~a 294 (538)
T TIGR03390 221 ISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK------VYRGYA 294 (538)
T ss_pred EEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC------cceEEE
Confidence 999999999 999999999999999999999999999999999985 489999997654332 356899
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCccchhhhh-hhcccCCCCCCC-CCCCCCcceEEEEEeccCcccCCCCCCCccCCCC
Q 036841 148 VLQYNGNYTPISSPPLPYLPSRNDTNSAFQFI-GSLRSLANEDHP-IDVPLDITSSIFSTVSLNTLPCENDNNSCEGPNG 225 (412)
Q Consensus 148 il~y~~~~~~~~~~~~p~~p~~~~~~~~~~~~-~~l~~~~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 225 (412)
||+|.+...+.. +..|..+..........+. ..+.++.....+ .+.+..+++++.+.+++.... .+
T Consensus 295 iL~Y~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~- 362 (538)
T TIGR03390 295 VLRYRSDKASKL-PSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LN- 362 (538)
T ss_pred EEEeCCCCCCCC-CCCCCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------cC-
Confidence 999976543221 1111111110000000010 122332111111 112345678887776643210 02
Q ss_pred ceeeeeeccccccCC-CchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEec
Q 036841 226 TRLAASLNNQSFVEP-SPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQG 304 (412)
Q Consensus 226 ~~~~~~~N~~~~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n 304 (412)
....|.+||++|..+ ...|+|...+.+ + .++.++ |+..... .. ......++.++.|++|||+|+|
T Consensus 363 g~~~~~~N~~s~~~~~~~~P~L~~~~~~--~-----~~~~~~--~~~~~~~--~~---~~~~~~~~~~~~~~~V~ivi~n 428 (538)
T TIGR03390 363 GRVAWLQNGLSWTESVRQTPYLVDIYEN--G-----LPATPN--YTAALAN--YG---FDPETRAFPAKVGEVLEIVWQN 428 (538)
T ss_pred CeEEEEECCcccCCCCCCCchHHHHhcC--C-----CCcCCC--ccccccc--CC---cCcCceEEEcCCCCEEEEEEEC
Confidence 246799999999852 256666554321 1 111111 1110000 00 0134557889999999999999
Q ss_pred CCcC-----CCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeC----------CCcEEEEEEEcCCc
Q 036841 305 TNLV-----AGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVP----------ISGWATVRFRASNP 369 (412)
Q Consensus 305 ~~~~-----~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp----------~~~~~~vr~~~~np 369 (412)
.... ....||||||||+||||++|.|.|+.......+++.||++|||+.|| +++|++|||++|||
T Consensus 429 ~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNP 508 (538)
T TIGR03390 429 TGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNP 508 (538)
T ss_pred CcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCC
Confidence 6310 25789999999999999999999986544456888999999999996 78999999999999
Q ss_pred eeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 370 GVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 370 G~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
|.|+|||||+||+..||+++|.|...
T Consensus 509 G~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 509 GVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred eeEEEeccchhhhhccceEEEEeCCh
Confidence 99999999999999999999998543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=4.8e-46 Score=381.01 Aligned_cols=259 Identities=25% Similarity=0.343 Sum_probs=182.8
Q ss_pred eEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEE
Q 036841 34 AFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDV 113 (412)
Q Consensus 34 ~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydV 113 (412)
.+||||+.. ...+++++++|++|||||||+|+.+.|.|+|+||+|+|||+||.+|+|+.+++|.|++||||||
T Consensus 248 ~~LiNG~~~-------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDV 320 (587)
T TIGR01480 248 TYLMNGTTP-------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDV 320 (587)
T ss_pred eEEEcCccC-------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEE
Confidence 478999832 2346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCCCCCC--CCCCccc-h----h-----hh---
Q 036841 114 LLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPLPYLP--SRNDTNS-A----F-----QF--- 178 (412)
Q Consensus 114 iv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~p~~p--~~~~~~~-~----~-----~~--- 178 (412)
+|+.++ .|.|+|.+...+. ...+.++|.+.+.... ..++++..| ...+... . . ..
T Consensus 321 lV~~~~-~g~~~i~a~~~~~--------~~~~~~~l~~~~~~~~-~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 390 (587)
T TIGR01480 321 IVEPTG-DDAFTIFAQDSDR--------TGYARGTLAVRLGLTA-PVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGM 390 (587)
T ss_pred EEecCC-CceEEEEEEecCC--------CceEEEEEecCCCCCC-CCCCCCCccccChhhcccccccccccccccccCcc
Confidence 999875 3799999876544 2357788887654211 111111111 0000000 0 0 00
Q ss_pred -----------------------------------------------------------------hhhcccCCCCCCCCC
Q 036841 179 -----------------------------------------------------------------IGSLRSLANEDHPID 193 (412)
Q Consensus 179 -----------------------------------------------------------------~~~l~~~~~~~~p~~ 193 (412)
..+|+.+ .|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~----~~~~ 466 (587)
T TIGR01480 391 PGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL----FPPP 466 (587)
T ss_pred cccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccc----cccc
Confidence 0000000 0000
Q ss_pred CCCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccccccCCCchhHHHHHHhhccccccCCCCCCCCccccCCC
Q 036841 194 VPLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQSFVEPSPIAILEAYYERINGVYGENFPDFPPYLFNFTA 273 (412)
Q Consensus 194 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~ 273 (412)
.+..+++++.+.+. + +-..+.|++||+.|..
T Consensus 467 ~~~~p~r~~~~~L~--------------g-~m~~~~wtiNG~~~~~---------------------------------- 497 (587)
T TIGR01480 467 DGRAPGREIELHLT--------------G-NMERFAWSFDGEAFGL---------------------------------- 497 (587)
T ss_pred CcCCCCceEEEEEc--------------C-CCceeEEEECCccCCC----------------------------------
Confidence 00112233322221 1 1134567888766521
Q ss_pred CCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEE
Q 036841 274 DDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVD 353 (412)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~ 353 (412)
...+.++.|++|+|.|.|. ..+.||||||||.|+++..+ | ..++++||+.
T Consensus 498 -------------~~pl~v~~Gervri~l~N~---t~~~HpmHlHG~~f~v~~~~-G-------------~~~~~~dTv~ 547 (587)
T TIGR01480 498 -------------KTPLRFNYGERLRVVLVND---TMMAHPIHLHGMWSELEDGQ-G-------------EFQVRKHTVD 547 (587)
T ss_pred -------------CCceEecCCCEEEEEEECC---CCCCcceeEcCceeeeecCC-C-------------cccccCCcee
Confidence 1124688999999999997 67899999999999998542 2 1235789999
Q ss_pred eCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEE
Q 036841 354 VPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIV 392 (412)
Q Consensus 354 vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V 392 (412)
|+|++++.++|++++||.|+||||++.|++.||++.|.|
T Consensus 548 V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 548 VPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999999999999999999999987
No 14
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.9e-44 Score=363.33 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=184.8
Q ss_pred ceeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEE-c
Q 036841 3 TKKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSI-A 81 (412)
Q Consensus 3 ~~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~si-d 81 (412)
.+++|+||+.+...+... .........+|.+||||+.. +.++|++| +|||||||+|+.+.+.|+| |
T Consensus 182 ~~l~l~D~~~~~~g~~~~--~~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d 248 (471)
T PRK10883 182 FPVIIQDKRLDNFGTPEY--NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSD 248 (471)
T ss_pred eeEEeeeeeeccCCCccc--cccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcC
Confidence 368999999986554211 11122235789999999954 78999985 7999999999999999999 8
Q ss_pred CccEEEEeeCCCcc-CceEEeEEEECCCceEEEEEEecCCCceeEEEeeccccccc--ccccCC---ccEEEEEEEcCCC
Q 036841 82 NHDLTVVGTDGAYT-NPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVN--LDFINN---TTATAVLQYNGNY 155 (412)
Q Consensus 82 gh~m~VIa~DG~~v-~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~--~~~~~~---~~~~ail~y~~~~ 155 (412)
+|+|+|||+||+++ +|+.+++|.|+|||||||+|++++ ++.+.+.+........ ...+.. .....+++.....
T Consensus 249 ~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
T PRK10883 249 GRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTG 327 (471)
T ss_pred CCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccc
Confidence 99999999998776 999999999999999999999976 3566666532111000 000000 0012233332211
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccc
Q 036841 156 TPISSPPLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQ 235 (412)
Q Consensus 156 ~~~~~~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~ 235 (412)
... ... ..+| ..+.. .. ..+..+.++..+.++.. .|.|||+
T Consensus 328 ~~~-~~~-~~~p------------~~l~~---~~---~~~~~~~~~~~~~l~~~-------------------~~~INg~ 368 (471)
T PRK10883 328 LLP-LVT-DNLP------------MRLLP---DE---IMEGSPIRSREISLGDD-------------------LPGINGA 368 (471)
T ss_pred ccc-CCC-CcCC------------hhhcC---CC---CCCCCCcceEEEEecCC-------------------cCccCCc
Confidence 000 000 0001 00111 00 01112334444433210 1458888
Q ss_pred cccCCCchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCce
Q 036841 236 SFVEPSPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPI 315 (412)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~ 315 (412)
.|... ...+.++.|++++|++.|. +.|||
T Consensus 369 ~~~~~----------------------------------------------~~~~~~~~g~~e~W~~~n~-----~~HP~ 397 (471)
T PRK10883 369 LWDMN----------------------------------------------RIDVTAQQGTWERWTVRAD-----MPQAF 397 (471)
T ss_pred ccCCC----------------------------------------------cceeecCCCCEEEEEEECC-----CCcCE
Confidence 77422 0124577999999999874 57999
Q ss_pred eecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCce----eEEEEeehhHhHhcCceEEEE
Q 036841 316 HLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPG----VWFMHCHREEHLTWGMKTVFI 391 (412)
Q Consensus 316 HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG----~w~~HCHi~~H~~~GM~~~~~ 391 (412)
||||+.|||+++++.... .....|||||.|+ +.+.|+++++++| .|||||||++|+|.|||+.|.
T Consensus 398 HlHg~~FqVl~~~G~~~~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~ 466 (471)
T PRK10883 398 HIEGVMFLIRNVNGAMPF---------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLL 466 (471)
T ss_pred eECCccEEEEEecCCCCC---------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeE
Confidence 999999999999643211 1223599999996 4699999999987 899999999999999999999
Q ss_pred EeC
Q 036841 392 VKN 394 (412)
Q Consensus 392 V~~ 394 (412)
|.+
T Consensus 467 V~~ 469 (471)
T PRK10883 467 VNP 469 (471)
T ss_pred Eec
Confidence 965
No 15
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=6.1e-44 Score=362.80 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=188.2
Q ss_pred ceeEEcccCCCChHHHHHHHH-hcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEE-
Q 036841 3 TKKNVGEWWKQDVTEVRNELL-RTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSI- 80 (412)
Q Consensus 3 ~~i~l~Dw~h~~~~~~~~~~~-~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~si- 80 (412)
.+++|+||+++...++..... ........+|.+|||||.. +.+.++ +++|||||||+|+++.+.|++
T Consensus 182 ~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~ 250 (523)
T PRK10965 182 IPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATS 250 (523)
T ss_pred eeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEc
Confidence 368999999987665421110 0111235789999999954 677775 579999999999999999998
Q ss_pred cCccEEEEeeCCCcc-CceEEeEEEECCCceEEEEEEecCCCceeEEEeeccccccc-ccccCCccEEEEEEEcCCCCCC
Q 036841 81 ANHDLTVVGTDGAYT-NPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVN-LDFINNTTATAVLQYNGNYTPI 158 (412)
Q Consensus 81 dgh~m~VIa~DG~~v-~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~-~~~~~~~~~~ail~y~~~~~~~ 158 (412)
|+|+|+|||+||+++ +|+.++.|.|+|||||||+|++++. +.|.+.+........ ...+.. ...++++......
T Consensus 251 dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~~-~~~~l~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~- 326 (523)
T PRK10965 251 DGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSDG-KAFDLVTLPVSQMGMALAPFDK--PLPVLRIQPLLIS- 326 (523)
T ss_pred CCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCCC-ceEEEEEecccCcccccccCCC--ceeEEEEeccCcC-
Confidence 899999999999987 9999999999999999999999874 788888764432210 001111 2345555432111
Q ss_pred CCCCCCCCCCCCCccchhhhhhhcccCCCCCCCCCCCCCcceEEEEEeccCcc----c--CCCCCC-CccC-C-------
Q 036841 159 SSPPLPYLPSRNDTNSAFQFIGSLRSLANEDHPIDVPLDITSSIFSTVSLNTL----P--CENDNN-SCEG-P------- 223 (412)
Q Consensus 159 ~~~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~----~--~~~~~~-~~~~-~------- 223 (412)
....+ |. .+..+. +.+ .......|++.+.+..... . ...+.. ...+ .
T Consensus 327 ~~~~~---P~------------~l~~~~--~~~-~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 388 (523)
T PRK10965 327 ASGTL---PD------------SLASLP--ALP-SLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGH 388 (523)
T ss_pred CCCcC---Ch------------hhccCC--CCC-cccccceeEEEEeeccccchhhhhhccccccccccccccccccccc
Confidence 01111 11 111111 000 0001123445443311000 0 000000 0000 0
Q ss_pred --C--------C----ce---e--eeeeccccccCCCchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCC
Q 036841 224 --N--------G----TR---L--AASLNNQSFVEPSPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPE 284 (412)
Q Consensus 224 --~--------g----~~---~--~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 284 (412)
. + .. + .|+|||+.|..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~--------------------------------------------- 423 (523)
T PRK10965 389 MGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM--------------------------------------------- 423 (523)
T ss_pred cccccccccccccccccccccccccccCCCeECCC---------------------------------------------
Confidence 0 0 00 0 12445444421
Q ss_pred CCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEE
Q 036841 285 QGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRF 364 (412)
Q Consensus 285 ~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~ 364 (412)
....+.++.|+++.|.|.|.+ ..+.|||||||++||||++.+... ....+.|||||.|++ +.+.|++
T Consensus 424 -~~~~~~~~~G~~e~w~i~N~~--~~~~Hp~HlHg~~F~Vl~~~g~~~---------~~~~~~wkDTv~v~~-~~~~i~~ 490 (523)
T PRK10965 424 -NKPMFAAKKGQYERWVISGVG--DMMLHPFHIHGTQFRILSENGKPP---------AAHRAGWKDTVRVEG-GRSEVLV 490 (523)
T ss_pred -CCcceecCCCCEEEEEEEeCC--CCCccCeEEeCcEEEEEEecCCCC---------CccccccccEEEECC-cEEEEEE
Confidence 122357889999999999973 236899999999999999864321 113457999999987 6666666
Q ss_pred EcC----CceeEEEEeehhHhHhcCceEEEEE
Q 036841 365 RAS----NPGVWFMHCHREEHLTWGMKTVFIV 392 (412)
Q Consensus 365 ~~~----npG~w~~HCHi~~H~~~GM~~~~~V 392 (412)
+++ ++|.|+|||||++|++.|||+.|.|
T Consensus 491 ~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 491 KFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 554 5779999999999999999999988
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.4e-36 Score=303.61 Aligned_cols=285 Identities=21% Similarity=0.257 Sum_probs=184.0
Q ss_pred ceeEEcccCCCChHHHHHHHHhcCCCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcC
Q 036841 3 TKKNVGEWWKQDVTEVRNELLRTGGLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIAN 82 (412)
Q Consensus 3 ~~i~l~Dw~h~~~~~~~~~~~~~g~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidg 82 (412)
.+++..||+.......... .........|..+|||+. ..+...++.+|||||+|++..+.+.+++.+
T Consensus 162 ~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~-----------~p~~~~~~g~~rlRl~n~~~~~~~~~~~~~ 228 (451)
T COG2132 162 PVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAI-----------LPFKAVPGGVVRLRLLNAGNARTYHLALGG 228 (451)
T ss_pred EEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCc-----------cceeecCCCeEEEEEEecCCceEEEEEecC
Confidence 5678889998776665333 122234568999999973 334444556699999999999999999999
Q ss_pred ccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCC
Q 036841 83 HDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPP 162 (412)
Q Consensus 83 h~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 162 (412)
++|+||++||.+++|..++.+.|++||||||+|+++. .+.+.+.+...... ....+...............
T Consensus 229 ~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 299 (451)
T COG2132 229 GPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGEDMP--------DTLKGFRAPNPILTPSYPVL 299 (451)
T ss_pred ceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccccCC--------ceeeeeeccccccccccccc
Confidence 9999999999999889999999999999999999997 47787877551111 11111111111000000000
Q ss_pred CCC--CCCCCCccchhhhhhhcccCCCCCCCCCCCC-CcceEEEEEeccCcccCCCCCCCccCCCCceeeeeeccccccC
Q 036841 163 LPY--LPSRNDTNSAFQFIGSLRSLANEDHPIDVPL-DITSSIFSTVSLNTLPCENDNNSCEGPNGTRLAASLNNQSFVE 239 (412)
Q Consensus 163 ~p~--~p~~~~~~~~~~~~~~l~~~~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~N~~~~~~ 239 (412)
.+. .+.. +. ........+.. ..+ .+. ..++.+.+... . ....|.+|++.|.
T Consensus 300 ~~~~~~~~~-d~-~~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~----------------~-~~~~~~~n~~~~~- 353 (451)
T COG2132 300 NGRVGAPTG-DM-ADHAPVGLLVT----ILV--EPGPNRDTDFHLIGG----------------I-GGYVWAINGKAFD- 353 (451)
T ss_pred cccccCCCc-ch-hhccccccchh----hcC--CCcccccccchhhcc----------------c-ccccccccCccCC-
Confidence 000 0000 00 00000000000 000 000 00000000000 0 0012334433331
Q ss_pred CCchhHHHHHHhhccccccCCCCCCCCccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecC
Q 036841 240 PSPIAILEAYYERINGVYGENFPDFPPYLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHG 319 (412)
Q Consensus 240 ~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG 319 (412)
.....+.++.|++++|++.|. ..+.|||||||
T Consensus 354 ---------------------------------------------~~~~~~~~~~G~~~~~~i~n~---~~~~HP~HlHg 385 (451)
T COG2132 354 ---------------------------------------------DNRVTLIAKAGTRERWVLTND---TPMPHPFHLHG 385 (451)
T ss_pred ---------------------------------------------CCcCceeecCCCEEEEEEECC---CCCccCeEEcC
Confidence 112346788999999999998 45899999999
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 320 YSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 320 ~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
+.|+|++.+ .......+.||||+.+.+++.++++|.+++||.|+||||+++|++.|||..+.|.
T Consensus 386 ~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 386 HFFQVLSGD----------APAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred ceEEEEecC----------CCcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 999999986 1122356789999999999999999999999999999999999999999999884
No 17
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=100.00 E-value=1.9e-33 Score=244.91 Aligned_cols=147 Identities=32% Similarity=0.606 Sum_probs=122.6
Q ss_pred ceeEEcccCCCChHHHHHHHHhcC----CCCCCCceEEEcCccCCCCCCCC-----CCceEEEEecCCEEEEEEEecccC
Q 036841 3 TKKNVGEWWKQDVTEVRNELLRTG----GLPAASDAFTINGQPGDLYPCSS-----SETFTLTVDEGKTYLLRIINAAMD 73 (412)
Q Consensus 3 ~~i~l~Dw~h~~~~~~~~~~~~~g----~~~~~~d~~lING~~g~~~~c~~-----~~~~~~~v~~Gk~yRlRlINa~~~ 73 (412)
.+|+|+||||+.+.+++.+++..+ ..++++|++||||+. .++|+. ...+.+++++|++|||||||+++.
T Consensus 3 ~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~--~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 3 YVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKG--RFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBT--CBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred EEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcc--ccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 478999999999999987765543 247899999999994 366653 457899999999999999999999
Q ss_pred ceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcC
Q 036841 74 EMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNG 153 (412)
Q Consensus 74 ~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~ 153 (412)
+.+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++|+|||++.....+. .......+.|+|+|.+
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~--~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSI--NDPQNGNALAILRYDG 158 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSS--HSHGGGTTEEEEEETT
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCC--ccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999997899999996221211 1224677999999976
No 18
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=1.3e-30 Score=222.11 Aligned_cols=107 Identities=43% Similarity=0.727 Sum_probs=96.5
Q ss_pred CCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEE
Q 036841 284 EQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVR 363 (412)
Q Consensus 284 ~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr 363 (412)
+.+..++.++.|+++||+|+|. +...|||||||++|+|++++.+.+... ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~---~~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNN---GSMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEEC---TTSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECC---CCCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 3778899999999999999997 567999999999999999998766443 346778899999999999999999999
Q ss_pred EEcCCceeEEEEeehhHhHhcCceEEEEEeC
Q 036841 364 FRASNPGVWFMHCHREEHLTWGMKTVFIVKN 394 (412)
Q Consensus 364 ~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~ 394 (412)
|++++||.|+|||||++|++.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999964
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.80 E-value=1.2e-19 Score=174.23 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=106.7
Q ss_pred eeEEcccCCCChHHHHHHHHhc-C-CCCCCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEc
Q 036841 4 KKNVGEWWKQDVTEVRNELLRT-G-GLPAASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIA 81 (412)
Q Consensus 4 ~i~l~Dw~h~~~~~~~~~~~~~-g-~~~~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sid 81 (412)
+++++|||++........+... + .....++.++||||.+.. .+.+++++|+++||||||++..+.+.|++.
T Consensus 158 ~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~ 230 (311)
T TIGR02376 158 YIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLI 230 (311)
T ss_pred EEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEe
Confidence 5789999997644321100000 0 112467999999995421 245789999999999999999999999999
Q ss_pred CccEEEEeeCCCccCceE--EeEEEECCCceEEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCC
Q 036841 82 NHDLTVVGTDGAYTNPLT--TSYITISPGQTLDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNY 155 (412)
Q Consensus 82 gh~m~VIa~DG~~v~P~~--v~~l~l~~GqRydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~ 155 (412)
||.+++|+.||+++.|.. ++++.|+|||||||+|++++ +|.|++++....... .....++|.|++..
T Consensus 231 g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~------~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 231 GGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF------EKGAAAQVKVEGAW 299 (311)
T ss_pred cCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH------hCCCEEEEEECCCC
Confidence 999999999999997644 89999999999999999998 599999987654421 33578999997754
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.54 E-value=4.5e-12 Score=121.89 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=75.5
Q ss_pred EeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCC--ceeeEEeCCCcEEEEEEEcCC
Q 036841 291 VLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPP--LRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 291 ~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~--~rDTv~vp~~~~~~vr~~~~n 368 (412)
.++.|++++|.|.|.+ ....+.||++|++|.++...++. .++. ..|++.|.||+.+.|.|+++.
T Consensus 205 ~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~~~~~~~~~~~i~PG~R~dv~v~~~~ 270 (311)
T TIGR02376 205 ALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------ANPPNRDVETWFIPGGSAAAALYTFEQ 270 (311)
T ss_pred ccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cCCCCCCcceEEECCCceEEEEEEeCC
Confidence 5678999999999985 45679999999999999884322 2222 369999999999999999999
Q ss_pred ceeEEEEeehhHhH-hcCceEEEEEe
Q 036841 369 PGVWFMHCHREEHL-TWGMKTVFIVK 393 (412)
Q Consensus 369 pG~w~~HCHi~~H~-~~GM~~~~~V~ 393 (412)
||.|.+|||...|. ..||++++.|.
T Consensus 271 pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 271 PGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred CeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 99999999999997 77999999885
No 21
>PLN02604 oxidoreductase
Probab=99.01 E-value=1e-09 Score=114.07 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
++.++.|+++++.+.|.. ....|++|+||.. +. +. .|. +.........|+||+..+++|++++
T Consensus 56 ~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~-~~-~~---~~~----------DG~~~~tq~~i~pg~s~~y~f~~~~ 118 (566)
T PLN02604 56 TILAQQGDTVIVELKNSL--LTENVAIHWHGIR-QI-GT---PWF----------DGTEGVTQCPILPGETFTYEFVVDR 118 (566)
T ss_pred cEEEECCCEEEEEEEeCC--CCCCCCEEeCCCC-CC-CC---ccc----------cCCCccccCccCCCCeEEEEEEcCC
Confidence 578899999999999972 2467999999994 11 10 000 0011123446889999999999999
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEeCCCC
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVKNGES 397 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 397 (412)
+|.|.||||...|...||++.+.|.++++
T Consensus 119 ~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 147 (566)
T PLN02604 119 PGTYLYHAHYGMQREAGLYGSIRVSLPRG 147 (566)
T ss_pred CEEEEEeeCcHHHHhCCCeEEEEEEecCC
Confidence 99999999999999999999999987643
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.87 E-value=8.5e-09 Score=84.69 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=67.5
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
+++.++.|+.|++.+.|. ....+.+|+||...---...+|.. .... -.|.||+..+.+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~---l~~~~siH~HG~~~~~~~~~DG~~--------~~~~-------~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNN---LDEPTSIHWHGLHQPPSPWMDGVP--------GVTQ-------CPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEE---SSSGBSEEEETSBSTTGGGGSGGT--------TTSG-------SSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEec---cccccccccceeeeeeeeecCCcc--------cccc-------eeEEeecceeeeEeee
Confidence 478999999999999997 467799999996421100011110 0001 1367899999999999
Q ss_pred C-ceeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 368 N-PGVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 368 n-pG~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
. +|.|.||||...|..+||.+.|.|++.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9 999999999999988999999999864
No 23
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.71 E-value=1.5e-06 Score=90.30 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=64.5
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
..+.++.|++++|.|+|.+ ....+.|||+||+|.||+..+. +..|...|++.|.+|+...|-++++
T Consensus 187 ~~i~v~~G~~~RlRlINa~--~~~~~~~~idgH~~~VIa~DG~------------~~~P~~~~~l~i~~GqRydVlv~a~ 252 (539)
T TIGR03389 187 FKLTVEPGKTYLLRIINAA--LNDELFFAIANHTLTVVEVDAT------------YTKPFKTKTIVIGPGQTTNVLLTAD 252 (539)
T ss_pred eEEEECCCCEEEEEEEecc--CCceEEEEECCCeEEEEEeCCc------------ccCceEeCeEEecCCCEEEEEEECC
Confidence 4688999999999999985 3556889999999999998432 2467788999999999999999998
Q ss_pred C-ceeEEEEeeh
Q 036841 368 N-PGVWFMHCHR 378 (412)
Q Consensus 368 n-pG~w~~HCHi 378 (412)
+ +|.|.++-+.
T Consensus 253 ~~~g~y~i~~~~ 264 (539)
T TIGR03389 253 QSPGRYFMAARP 264 (539)
T ss_pred CCCceEEEEEec
Confidence 6 7988877653
No 24
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.62 E-value=1.4e-07 Score=97.72 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=69.5
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.+..|+.+++.+.|.. ....+.+|+||.+. .+. .|. +..+.-..-.|+||+..+.+|++++
T Consensus 33 ~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~--~~~---~~~----------DG~~~vtq~~I~PG~s~~y~f~~~~ 95 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ--IGT---PWA----------DGTAGVTQCAINPGETFIYNFVVDR 95 (541)
T ss_pred eEEEEcCCEEEEEEEECC--CCCCccEEecCcCC--cCC---ccc----------CCCCccccCCcCCCCEEEEEEEcCC
Confidence 578899999999999972 34679999999941 111 110 0000111235789999999999999
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEeCCC
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVKNGE 396 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~~~~ 396 (412)
+|.|.||||...|...||.+.|.|++++
T Consensus 96 ~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 96 PGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred CEEEEEEecchHHhhccceEEEEEecCC
Confidence 9999999999999999999999998764
No 25
>PLN02835 oxidoreductase
Probab=98.42 E-value=4.8e-05 Score=78.74 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=59.5
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|++++|.|+|.+ ....+-||+.||+|.||+..+. +..|...|++.|.+|+...|-++++.
T Consensus 203 ~~~v~~G~~yRlRliNa~--~~~~~~f~i~gH~~~VI~~DG~------------~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVG--LSTSLNFRIQGHTMKLVEVEGS------------HTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred eEEECCCCEEEEEEEEcC--CCccEEEEECCCEEEEEEECCc------------cCCCceeeEEEECcCceEEEEEEcCC
Confidence 467889999999999985 4557999999999999988433 23456789999999999999999876
Q ss_pred -ceeEEEE
Q 036841 369 -PGVWFMH 375 (412)
Q Consensus 369 -pG~w~~H 375 (412)
+|.|-++
T Consensus 269 ~~g~y~i~ 276 (539)
T PLN02835 269 SPKDYYIV 276 (539)
T ss_pred CCCcEEEE
Confidence 5766555
No 26
>PLN02792 oxidoreductase
Probab=98.34 E-value=9.7e-05 Score=76.28 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=59.8
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|++++|.|+|.+ ....+-|++.||+|.||+..+. +..|...|++.|.+|+...|-++++.
T Consensus 194 ~~~v~~Gk~yRlRliNa~--~~~~~~f~i~gH~~tVI~~DG~------------~v~p~~~~~l~i~~GqRydVlV~a~~ 259 (536)
T PLN02792 194 SITVDKGKTYRFRISNVG--LQTSLNFEILGHQLKLIEVEGT------------HTVQSMYTSLDIHVGQTYSVLVTMDQ 259 (536)
T ss_pred eEEECCCCEEEEEEEEcC--CCceEEEEECCcEEEEEEeCCc------------cCCCcceeEEEEccCceEEEEEEcCC
Confidence 578889999999999985 4567899999999999987432 23466779999999999999999987
Q ss_pred -ceeEEEE
Q 036841 369 -PGVWFMH 375 (412)
Q Consensus 369 -pG~w~~H 375 (412)
+|.|-+.
T Consensus 260 ~~g~Y~i~ 267 (536)
T PLN02792 260 PPQNYSIV 267 (536)
T ss_pred CCceEEEE
Confidence 4765554
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=98.33 E-value=9.1e-05 Score=76.83 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=63.1
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
...++++.|+++.|.|+|.+ .....-||+.||+|.||+..+. +..|...|++.|.+|+...|-+++
T Consensus 206 ~~~~~v~~Gk~yRlRiINa~--~~~~~~f~IdgH~~tVIa~DG~------------~v~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 206 EPLFTMKPGKTYRYRICNVG--LKSSLNFRIQGHKMKLVEMEGS------------HVLQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred ceEEEECCCCEEEEEEEecC--CCceEEEEECCceEEEEEeCCc------------ccCCcceeEEEEccCceEEEEEEC
Confidence 34688999999999999986 4567999999999999987432 234566899999999999999999
Q ss_pred CC-ceeEEEEee
Q 036841 367 SN-PGVWFMHCH 377 (412)
Q Consensus 367 ~n-pG~w~~HCH 377 (412)
+. +|.|-+.-.
T Consensus 272 ~~~~g~Y~i~a~ 283 (552)
T PLN02354 272 NQAPKDYYMVAS 283 (552)
T ss_pred CCCCCcEEEEEe
Confidence 86 787666654
No 28
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.30 E-value=4e-06 Score=72.90 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred CceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEE
Q 036841 286 GTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFR 365 (412)
Q Consensus 286 ~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~ 365 (412)
..+.+.++.|+++.|.|+|.+ ....+.||++||+|+||+..+.. ..|...|++.|.+|+.+.|-++
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEE
Confidence 345789999999999999985 45679999999999999984321 3378899999999999999999
Q ss_pred cCC-ceeEEEEe----ehhHhHhcCceEEEEEeC
Q 036841 366 ASN-PGVWFMHC----HREEHLTWGMKTVFIVKN 394 (412)
Q Consensus 366 ~~n-pG~w~~HC----Hi~~H~~~GM~~~~~V~~ 394 (412)
++. +|.|.+++ +...+...|+...+++..
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 998 99999999 666778888888777644
No 29
>PLN02191 L-ascorbate oxidase
Probab=98.28 E-value=4.6e-06 Score=86.92 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=69.1
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceee------EEeCCCcEEE
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTI------VDVPISGWAT 361 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDT------v~vp~~~~~~ 361 (412)
+++.+..|+.+++.+.|.- ....+.+|+||.... +. .|.|- -.|+||+..+
T Consensus 54 P~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~~----~~-----------------~~~DGv~gvtq~pI~PG~s~~ 110 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQK----GS-----------------PWADGAAGVTQCAINPGETFT 110 (574)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEECCCCCCC----CC-----------------ccccCCCccccCCcCCCCeEE
Confidence 3678899999999999972 346799999998511 10 01121 2478999999
Q ss_pred EEEEcCCceeEEEEeehhHhHhcCceEEEEEeCCC
Q 036841 362 VRFRASNPGVWFMHCHREEHLTWGMKTVFIVKNGE 396 (412)
Q Consensus 362 vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~~ 396 (412)
.+|+++.+|.|.||||...+...||.+.+.|++.+
T Consensus 111 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 145 (574)
T PLN02191 111 YKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAK 145 (574)
T ss_pred EEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCC
Confidence 99999999999999999999999999999997543
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.26 E-value=0.00017 Score=74.85 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=57.9
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCce-EEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYS-FFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~-F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
..+.++.|++++|.|+|.+ .....-|++.||+ |+||+..+. +..|...|++.|.+|+...|-+++
T Consensus 198 ~~~~v~~G~~yRlRlINa~--~~~~~~~~idgH~~~~VIa~DG~------------~~~P~~v~~l~l~~GqRydVlv~~ 263 (538)
T TIGR03390 198 PVIDVEPGKTYRLRFIGAT--ALSLISLGIEDHENLTIIEADGS------------YTKPAKIDHLQLGGGQRYSVLFKA 263 (538)
T ss_pred eEEEECCCCEEEEEEEccC--CceEEEEEECCCCeEEEEEeCCC------------CCCceEeCeEEEccCCEEEEEEEC
Confidence 4688999999999999985 3456899999999 999987432 357888999999999999999999
Q ss_pred CCc
Q 036841 367 SNP 369 (412)
Q Consensus 367 ~np 369 (412)
+++
T Consensus 264 ~~~ 266 (538)
T TIGR03390 264 KTE 266 (538)
T ss_pred CCc
Confidence 864
No 31
>PLN02991 oxidoreductase
Probab=98.21 E-value=0.00013 Score=75.37 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=58.9
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|++++|.|+|.+ ....+-|+|.||+|+||+..+. +..|...|++.|.+|+...|-+++++
T Consensus 203 ~~~v~~G~~yRlRiINa~--~~~~~~~~idgH~~tVIa~DG~------------~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 203 TLNIEPGKTYRLRISNVG--LQNSLNFRIQNHTMKLVEVEGT------------HTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred eEEECCCCEEEEEEEecc--CCeeEEEEECCCEEEEEEeCCc------------cccceeeeEEEEcCCcEEEEEEECCC
Confidence 478889999999999985 3456899999999999987432 24567889999999999999999988
Q ss_pred c-e-eEEE
Q 036841 369 P-G-VWFM 374 (412)
Q Consensus 369 p-G-~w~~ 374 (412)
+ | .|+-
T Consensus 269 ~~~~y~i~ 276 (543)
T PLN02991 269 PAKDYYIV 276 (543)
T ss_pred CCCcEEEE
Confidence 4 5 4554
No 32
>PRK10883 FtsI repressor; Provisional
Probab=98.20 E-value=0.00029 Score=71.86 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=58.6
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceee-cCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHL-HGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
.+.++.+ +++|.|.|.+ .....-+++ +||.|+||+..+|.. ..|...|.+.+.+|+.+.|-+.++
T Consensus 221 ~~~v~~~-~~RlRliNas--~~~~~~l~l~d~~~~~vIa~DGg~~-----------~~P~~~~~l~l~pGeR~dvlVd~~ 286 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNAS--NARRYQLQMSDGRPLHVIAGDQGFL-----------PAPVSVKQLSLAPGERREILVDMS 286 (471)
T ss_pred eEEecCC-EEEEEEEEcc--CCceEEEEEcCCCeEEEEEeCCCcc-----------cCCcEeCeEEECCCCeEEEEEECC
Confidence 3566554 7999999985 345577788 899999999865532 456677999999999999999998
Q ss_pred CceeEEEEe
Q 036841 368 NPGVWFMHC 376 (412)
Q Consensus 368 npG~w~~HC 376 (412)
+.+.+.+++
T Consensus 287 ~~~~~~l~~ 295 (471)
T PRK10883 287 NGDEVSITA 295 (471)
T ss_pred CCceEEEEC
Confidence 878888886
No 33
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.15 E-value=1e-05 Score=69.10 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=58.1
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCce--EEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCC---C--cEE
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYS--FFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPI---S--GWA 360 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~--F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~---~--~~~ 360 (412)
+.+.++.|++|++++.|.+ ....|.|-||-+. +.....-.|. |..-..-.+|+ + ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~~~p~mdG~--------------~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYPYMPGMDGL--------------GFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCccccccccCCC--------------CccccCcccCCCCCCcccee
Confidence 4678999999999999984 2355666665321 1110000000 00111111221 2 246
Q ss_pred EEEEEcCCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 361 TVRFRASNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 361 ~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
.+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 788988999999999999999999999999883
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.06 E-value=2.3e-05 Score=81.59 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.+..|+.+++.+.|. -...+.+|+||-.. -....|. +..-.-.|+||+..+.+|.+..
T Consensus 77 ~ir~~~Gd~v~v~v~N~---l~~~tsiHwHGl~~--~~~~DGv---------------P~vt~~~I~PG~s~~Y~f~~~~ 136 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNT---LPEDTSIHWHGILL--PFQMDGV---------------PGVSFAGIAPGETFTYRFPVRQ 136 (587)
T ss_pred eEEEECCCEEEEEEEcC---CCCCceEEcCCCcC--CccccCC---------------CcccccccCCCCeEEEEEECCC
Confidence 67889999999999997 45789999999741 1110110 0000124789999999999999
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
+|.|.||||...++..||.+.+.|++.
T Consensus 137 ~GTyWYHsH~~~q~~~GL~G~lIV~~~ 163 (587)
T TIGR01480 137 SGTYWYHSHSGFQEQAGLYGPLIIDPA 163 (587)
T ss_pred CeeEEEecCchhHhhccceEEEEECCC
Confidence 999999999999999999999999764
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.95 E-value=0.00011 Score=61.93 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc-----------CceEEeEEEECCCceEEEEEEecC
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-----------NPLTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-----------~P~~v~~l~l~~GqRydViv~~~~ 119 (412)
....++++.|++++|+|+|.+.. ...|++.||+|+|++.++... .|...|++.+.+|++..+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 34789999999999999997765 888999999999999999873 68899999999999999999998
Q ss_pred CCceeEEEeecc
Q 036841 120 NPNLYYMASSVY 131 (412)
Q Consensus 120 ~~g~y~ir~~~~ 131 (412)
.+|.|.+.....
T Consensus 110 ~~G~w~~HCHi~ 121 (138)
T PF07731_consen 110 NPGPWLFHCHIL 121 (138)
T ss_dssp STEEEEEEESSH
T ss_pred cceEEEEEEchH
Confidence 459998887654
No 36
>PLN02168 copper ion binding / pectinesterase
Probab=97.95 E-value=4.2e-05 Score=79.05 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc-C
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA-S 367 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~-~ 367 (412)
.+.+..|+++++.+.|. -.....+|+||-. +...+ |. +..+- -.-.|+||++.+.+|++ +
T Consensus 58 ~I~~~~GD~v~V~v~N~---L~~~ttiHWHGl~--~~~~~---~~----------DGv~g-tQcpI~PG~sftY~F~~~~ 118 (545)
T PLN02168 58 LLNATANDVINVNIFNN---LTEPFLMTWNGLQ--LRKNS---WQ----------DGVRG-TNCPILPGTNWTYRFQVKD 118 (545)
T ss_pred cEEEECCCEEEEEEEeC---CCCCccEeeCCcc--CCCCC---Cc----------CCCCC-CcCCCCCCCcEEEEEEeCC
Confidence 57888999999999997 3467899999963 11110 00 00011 11357899999999998 5
Q ss_pred CceeEEEEeehhHhHhcCceEEEEEeCCCC
Q 036841 368 NPGVWFMHCHREEHLTWGMKTVFIVKNGES 397 (412)
Q Consensus 368 npG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 397 (412)
.+|.+.||||...+...||.+.+.|+++++
T Consensus 119 q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~ 148 (545)
T PLN02168 119 QIGSYFYFPSLLLQKAAGGYGAIRIYNPEL 148 (545)
T ss_pred CCceEEEecChhhhhhCcceeEEEEcCCcc
Confidence 799999999999999999999999987643
No 37
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=0.0022 Score=66.37 Aligned_cols=233 Identities=18% Similarity=0.182 Sum_probs=135.6
Q ss_pred CceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCcc-EEEEeeCCCccCceEEeEEEECCCce
Q 036841 32 SDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHD-LTVVGTDGAYTNPLTTSYITISPGQT 110 (412)
Q Consensus 32 ~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~-m~VIa~DG~~v~P~~v~~l~l~~GqR 110 (412)
-..++|||+. ..|.|.++.|.+..++++|-.. ..+.++-.|-+ .+=-..||.++ +.=.|.|||.
T Consensus 47 ~~vi~iNG~f---------PGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~ 111 (563)
T KOG1263|consen 47 KQVITINGQF---------PGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGEN 111 (563)
T ss_pred ceeEeecCCC---------CCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCe
Confidence 3568999993 2399999999999999999954 77777777743 33344599543 3334899999
Q ss_pred EEEEEEecCCCceeEEEeecccccccccccCCccEEEEEEEcCCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCC
Q 036841 111 LDVLLQANQNPNLYYMASSVYSTVVNLDFINNTTATAVLQYNGNYTPISSPPLPYLPSRNDTNSAFQFIGSLRSLANEDH 190 (412)
Q Consensus 111 ydViv~~~~~~g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~~~~~~~ 190 (412)
|---.+.+...|+||-.+....-.. ...-.|++.+..... +.+.+ .|
T Consensus 112 ~tY~F~v~~q~GT~~yh~h~~~~Ra------~G~~G~liI~~~~~~---p~pf~-~p----------------------- 158 (563)
T KOG1263|consen 112 FTYRFTVKDQIGTLWYHSHVSWQRA------TGVFGALIINPRPGL---PVPFP-KP----------------------- 158 (563)
T ss_pred EEEEEEeCCcceeEEEeeccccccc------cCceeEEEEcCCccC---CCCCC-CC-----------------------
Confidence 9988888866699887765432221 111233333322111 00111 00
Q ss_pred CCCCCCCcceEEEEEeccCcccCC---C-CCCCccCCCCceeeeeeccccccCCCchhHHHHHHhhccccccCCCCCCCC
Q 036841 191 PIDVPLDITSSIFSTVSLNTLPCE---N-DNNSCEGPNGTRLAASLNNQSFVEPSPIAILEAYYERINGVYGENFPDFPP 266 (412)
Q Consensus 191 p~~~p~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~~~~~~~N~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p 266 (412)
..+..+.+.--....... . .+++...++- .-...+||++..
T Consensus 159 ------d~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~-~D~~~iNg~~g~---------------------------- 203 (563)
T KOG1263|consen 159 ------DKEFTILLGDWYKNLNHKNLKNFLDRTGALPNP-SDGVLINGRSGF---------------------------- 203 (563)
T ss_pred ------CceeEEEeEeeccccCHHHHHHhhccCCCCCCC-CCceEECCCCCc----------------------------
Confidence 001111111100000000 0 0000000000 000124443210
Q ss_pred ccccCCCCCCCCCccCCCCCceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCC
Q 036841 267 YLFNFTADDLPTILQIPEQGTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDP 346 (412)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np 346 (412)
+| .|...+++..|+++.|.|.|.+. ....+ |.+-||.+.||+..+. +..|
T Consensus 204 -~~---------------~~~~~l~v~pGktY~lRiiN~g~-~~~l~-F~I~~H~ltvVe~Dg~------------y~~p 253 (563)
T KOG1263|consen 204 -LY---------------NCTPTLTVEPGKTYRLRIINAGL-NTSLN-FSIANHQLTVVEVDGA------------YTKP 253 (563)
T ss_pred -cc---------------CceeEEEEcCCCEEEEEEEcccc-ccceE-EEECCeEEEEEEecce------------EEee
Confidence 00 44667899999999999999864 23334 9999999999987432 2456
Q ss_pred CceeeEEeCCCcEEEEEEEcCCc-e-eEEEEee
Q 036841 347 PLRTIVDVPISGWATVRFRASNP-G-VWFMHCH 377 (412)
Q Consensus 347 ~~rDTv~vp~~~~~~vr~~~~np-G-~w~~HCH 377 (412)
..-|++.|.+|+...+-+++|.+ + .|+-=|-
T Consensus 254 ~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 254 FTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred eeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 67899999999999999999874 4 5665554
No 38
>PRK10965 multicopper oxidase; Provisional
Probab=97.79 E-value=0.00011 Score=75.79 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=70.4
Q ss_pred EEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccC---ceEEeEEEECCCceEE
Q 036841 36 TINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTN---PLTTSYITISPGQTLD 112 (412)
Q Consensus 36 lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~---P~~v~~l~l~~GqRyd 112 (412)
+|||+.. +. ..+.++++.|++++|+|+|.+.....-|+|.|+.|+|++.||.+.. +-..|++.+.+ ++..
T Consensus 415 ~ING~~~---~~---~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~ 487 (523)
T PRK10965 415 KINGKAF---DM---NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSE 487 (523)
T ss_pred cCCCeEC---CC---CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEE
Confidence 7999942 21 2356889999999999999997667889999999999999998775 34579999966 8899
Q ss_pred EEEEecCC---CceeEEEeec
Q 036841 113 VLLQANQN---PNLYYMASSV 130 (412)
Q Consensus 113 Viv~~~~~---~g~y~ir~~~ 130 (412)
++++++.. .|.|......
T Consensus 488 i~~~f~~~~~~~g~~~~HCHi 508 (523)
T PRK10965 488 VLVKFDHDAPKEHAYMAHCHL 508 (523)
T ss_pred EEEEecCCCCCCCCEEEEeCc
Confidence 99999853 3577666554
No 39
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.79 E-value=0.0001 Score=58.58 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=58.2
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
..+.++.|++|+|+ |. +...|-+.++...+..-. . ........+.+.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~---~~~~H~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NN---KGGPHNVVFDEDAVPAGV-----K---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--EC---CCCCceEEECCCCCccch-----h---------hhcccccccccccCCCCEEEEEeCC-
Confidence 35789999999887 54 346788777654222110 0 0011123466788899998887776
Q ss_pred CceeEEEEeehhHhHhcCceEEEEEe
Q 036841 368 NPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 368 npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
+|.|.|||- -|..+||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999883
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.71 E-value=0.00016 Score=75.33 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=69.1
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc-C
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA-S 367 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~-~ 367 (412)
.+.+..|+++++.+.|. -.....+|+||-+..--...+|. .- ..-.|+||+..+.+|++ +
T Consensus 61 tI~~~~GD~v~V~V~N~---L~~~ttIHWHGl~q~~t~w~DGv---------------~~-TQcPI~PG~sftY~F~~~d 121 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNA---LDEPLLLTWHGVQQRKSAWQDGV---------------GG-TNCAIPAGWNWTYQFQVKD 121 (596)
T ss_pred cEEEECCCEEEEEEEeC---CCCCccEEECCccCCCCccccCC---------------CC-CcCCcCCCCcEEEEEEeCC
Confidence 57888999999999997 35678999999642221111111 11 22357899999999999 5
Q ss_pred CceeEEEEeehhHhHhcCceEEEEEeCCC
Q 036841 368 NPGVWFMHCHREEHLTWGMKTVFIVKNGE 396 (412)
Q Consensus 368 npG~w~~HCHi~~H~~~GM~~~~~V~~~~ 396 (412)
.+|.+-||+|..++...||.+.+.|.+++
T Consensus 122 q~GT~WYHsH~~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 122 QVGSFFYAPSTALHRAAGGYGAITINNRD 150 (596)
T ss_pred CCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence 89999999999999999999999998754
No 41
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.49 E-value=0.00064 Score=56.53 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=48.3
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|+.|+|++.|. +...|.+-++++.+ ...+++++..+++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~---d~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENK---SPISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeC---CCCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 57899999999999997 45678777766521 235678999999999999
Q ss_pred ceeEEEEeeh
Q 036841 369 PGVWFMHCHR 378 (412)
Q Consensus 369 pG~w~~HCHi 378 (412)
||.+-|||-+
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999974
No 42
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.13 E-value=0.0019 Score=66.71 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=59.8
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
-+.++.|+.|.+.+.|.+......|.|.+-++... +.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcCC
Confidence 46889999999999996432367788888555322 23447999999999999
Q ss_pred ceeEEEEeehhHh-HhcCceEEEEEeC
Q 036841 369 PGVWFMHCHREEH-LTWGMKTVFIVKN 394 (412)
Q Consensus 369 pG~w~~HCHi~~H-~~~GM~~~~~V~~ 394 (412)
||.|.+||...-| ...+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 9999999997433 2249999999965
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.09 E-value=0.0047 Score=49.01 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=54.6
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecC-CCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGF-GNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~-g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
..+.++.|++|.|+..+ ...|.+++ ...+. ...+.. .. +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~~~~~~~~~----~~----~~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADGMPAGADSD----YV----PPGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTSSHTTGGHC----HH----STTCEEEEBSTTEEEEEEEE-
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccccccccccc----cc----CccccceecCCCCEEEEEeC-
Confidence 35789999999987763 33555443 32110 000000 00 01115667888998888887
Q ss_pred CCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 367 SNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
.+|.+.|+|- - |...||.+.+.|+
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 4 9999999999984
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.85 E-value=0.0046 Score=49.53 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=42.2
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|+.+.+++.|.+ ...|-|.+.+. ..+ ..+++|+..++.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~---------------------------~~~-~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND---SRPHEFVIPDL---------------------------GIS-KVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-S---SS-EEEEEGGG---------------------------TEE-EEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECC---CCcEEEEECCC---------------------------ceE-EEECCCCEEEEEEcCCC
Confidence 579999999999999984 34455544441 122 56778999999999999
Q ss_pred ceeEEEEeehhHhHhcCc
Q 036841 369 PGVWFMHCHREEHLTWGM 386 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM 386 (412)
||.+-|+|-+-.+ +.|.
T Consensus 85 ~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 85 PGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp -EEEEEB-SSS-T-TB--
T ss_pred CEEEEEEcCCCCc-ceec
Confidence 9999999996554 3443
No 45
>PRK02710 plastocyanin; Provisional
Probab=96.46 E-value=0.017 Score=47.56 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
.+.++.|++|+|+ |. +...|.+.+.+... + ..+ -..+.++....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~---~~~~H~v~~~~~~~---------~--------------~~~-~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NN---KLAPHNAVFDGAKE---------L--------------SHK-DLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--EC---CCCCceEEecCCcc---------c--------------ccc-ccccCCCCEEEEEecC--
Confidence 5788899999885 43 34578776543210 0 011 1345678887777765
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEe
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
||.+.|+|= -|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999883
No 46
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.03 E-value=0.036 Score=56.53 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc---CceEEeEEEECCCceEEEEEEecCCCceeEEEe
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT---NPLTTSYITISPGQTLDVLLQANQNPNLYYMAS 128 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v---~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~ 128 (412)
...+.++.|+++||+|.|-+. ...-|++.||.|.|++.| ... .+...|++.+.+|+|..+.++++.+ |.|.+..
T Consensus 356 ~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~-g~~~~HC 432 (451)
T COG2132 356 RVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDADYP-GPWMFHC 432 (451)
T ss_pred cCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCCCC-CceEEec
Confidence 466889999999999999998 888899999999999999 333 4567899999999999999999876 6777766
Q ss_pred ec
Q 036841 129 SV 130 (412)
Q Consensus 129 ~~ 130 (412)
..
T Consensus 433 H~ 434 (451)
T COG2132 433 HI 434 (451)
T ss_pred cc
Confidence 54
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=95.98 E-value=0.014 Score=47.87 Aligned_cols=87 Identities=25% Similarity=0.252 Sum_probs=63.7
Q ss_pred CceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCccEEE-EeeCCCccCceEEeEEEECCCce
Q 036841 32 SDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTV-VGTDGAYTNPLTTSYITISPGQT 110 (412)
Q Consensus 32 ~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~V-Ia~DG~~v~P~~v~~l~l~~GqR 110 (412)
-..+++||+. ..|+|+++.|++.++++.|... ....++..|-.+.- -..||..-.+. -.|.||+.
T Consensus 14 ~~~~~~ng~~---------pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~----~~i~pG~~ 79 (117)
T PF07732_consen 14 RKVWTYNGQF---------PGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQ----CPIAPGES 79 (117)
T ss_dssp EEEEEETTBS---------SEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSG----SSBSTTEE
T ss_pred EEEEEECCCC---------CCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccc----eeEEeecc
Confidence 5678999983 3489999999999999999984 45556665533211 12677654222 34899999
Q ss_pred EEEEEEecCCCceeEEEeeccc
Q 036841 111 LDVLLQANQNPNLYYMASSVYS 132 (412)
Q Consensus 111 ydViv~~~~~~g~y~ir~~~~~ 132 (412)
+..-+.+++.+|.||-......
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHVHG 101 (117)
T ss_dssp EEEEEEESSCSEEEEEEECSTT
T ss_pred eeeeEeeeccccceeEeeCCCc
Confidence 9999999997799998876543
No 48
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.021 Score=48.27 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=64.7
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
-+.++.|++++.++.|.. ...|=|-+- ++....+ .+.-...... ...--..++.+.||.+..+-+++.+
T Consensus 64 ~~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~--~~~~~~~~~D---me~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 64 SFEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE--HVTHMILADD---MEHDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred cccccCCcEEeeeecCcc---cceEEEecc---Cccccch--hHHHhhhCCc---cccCCcceeEeCCCCcEEEEEEecC
Confidence 356779999999999973 445555443 2221111 0100000000 1112456899999999999999999
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEe
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
+|.+.|-|-|-+|.+.||-+.+.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999884
No 49
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.88 E-value=0.042 Score=44.82 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCcEEEEEEEcCCceeEEEEeehhHhHhcCceEEEEEeCCCCCCC
Q 036841 356 ISGWATVRFRASNPGVWFMHCHREEHLTWGMKTVFIVKNGESPQE 400 (412)
Q Consensus 356 ~~~~~~vr~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~~ 400 (412)
++.... ++++.+|.+.|+|- .|...||-+.+.|.++...++
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~~ 94 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANLD 94 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCHH
Confidence 355544 45578999999998 999999999999987644444
No 50
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.56 E-value=0.09 Score=44.92 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCCceEEEcCccCCCCCCCCCCceEEEEecCCEEEEEEEecccCceEEEEEcCcc--EEE-EeeCCCccCceEEeEEEEC
Q 036841 30 AASDAFTINGQPGDLYPCSSSETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHD--LTV-VGTDGAYTNPLTTSYITIS 106 (412)
Q Consensus 30 ~~~d~~lING~~g~~~~c~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~--m~V-Ia~DG~~v~P~~v~~l~l~ 106 (412)
+...++.|||..+ |.|+++.|.+++|++.|....-...|.|..+. +.. -+.||....+.....-...
T Consensus 39 ~~~~~f~~~~~~~----------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~ 108 (148)
T TIGR03095 39 PSMYSFEIHDLKN----------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPK 108 (148)
T ss_pred CCceeEEecCCCC----------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCC
Confidence 4567788888754 89999999999999999976434445554332 111 1356643221110000112
Q ss_pred CCce--EEEEEEecCCCceeEEEee
Q 036841 107 PGQT--LDVLLQANQNPNLYYMASS 129 (412)
Q Consensus 107 ~GqR--ydViv~~~~~~g~y~ir~~ 129 (412)
+|+. .++..++++ +|.||....
T Consensus 109 ~g~~~~~~~tf~f~~-aGtywyhC~ 132 (148)
T TIGR03095 109 SGKFGYTDFTYHFST-AGTYWYLCT 132 (148)
T ss_pred CCccceeEEEEECCC-CeEEEEEcC
Confidence 3555 488888886 499999854
No 51
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.79 E-value=0.26 Score=37.53 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=45.9
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+.+.+..|++|.|+ |. ....|-.+++.-.+ +..+ +.. -.+.++.... +++
T Consensus 10 P~~i~v~~GdtVt~~--N~---d~~~Hnv~~~~g~~-------~~~~--------------~~~-~~~~~g~~~~--~tf 60 (83)
T TIGR02657 10 TPELHVKVGDTVTWI--NR---EAMPHNVHFVAGVL-------GEAA--------------LKG-PMMKKEQAYS--LTF 60 (83)
T ss_pred CCEEEECCCCEEEEE--EC---CCCCccEEecCCCC-------cccc--------------ccc-cccCCCCEEE--EEC
Confidence 335788999999984 54 34678887653211 0000 111 1223454444 566
Q ss_pred CCceeEEEEeehhHhHhcCceEEEEEe
Q 036841 367 SNPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
+.||.|.|||=+ |- +|.+.+.|+
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEEEC
Confidence 889999999986 55 499988873
No 52
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.60 E-value=0.21 Score=41.67 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=49.8
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeec
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
.+..|+|+.|++++|++.|... ....+.++++. -...|.+||+..+-+.++++ |.|+.....
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adKp-G~Y~y~C~~ 120 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADKA-GAFTIWCQL 120 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCCC-EEEEEeCCC
Confidence 4578999999999999999887 46666666652 15678999999999999986 999877643
No 53
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.16 E-value=0.31 Score=38.82 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=40.9
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEee
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASS 129 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~ 129 (412)
+..++++.|+.++|.+.|.+... ..|.+++ .. ....|.+|+...+.+...++ |.|.+...
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~---------------~~-~~~~l~~g~~~~~~f~~~~~-G~y~~~C~ 93 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPD---------------LG-ISKVLPPGETATVTFTPLKP-GEYEFYCT 93 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGG---------------GT-EEEEE-TT-EEEEEEEE-S--EEEEEB-S
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECC---------------Cc-eEEEECCCCEEEEEEcCCCC-EEEEEEcC
Confidence 46899999999999999998764 6666666 11 22678999999999876664 99987764
No 54
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.10 E-value=0.35 Score=39.37 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=48.3
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
..+.++.|++|.|+.... ...|-.. +.+.+.|+.. .....++....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDES---------------ERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCcccc---------------ccccCCCCEEEEEe--c
Confidence 357899999999976542 2344432 2222333210 01123466655555 7
Q ss_pred CceeEEEEeehhHhHhcCceEEEEEe
Q 036841 368 NPGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 368 npG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
.||.+.|+|- .|...||.+.+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999998 89999999999883
No 55
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.47 E-value=0.85 Score=37.46 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=53.5
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+.+.++.|+.|.+.+.+. +..|.|.+-+....+ .+-||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeee
Confidence 4468999999999999985 568988887765444 33478999999999
Q ss_pred CCceeEEEEeehhHh-HhcCceEEEEE
Q 036841 367 SNPGVWFMHCHREEH-LTWGMKTVFIV 392 (412)
Q Consensus 367 ~npG~w~~HCHi~~H-~~~GM~~~~~V 392 (412)
+.||.+-..|...=. ....|.+.+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999986633 22335555443
No 56
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.43 E-value=0.37 Score=43.43 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=56.5
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-+.++.|+.|++.+.+. +..|.|.+-+...+ + .+-||....+.|++
T Consensus 116 ~~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~k-------------------------~---da~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK----DVIHSFWVPELGGK-------------------------I---DAIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC----chhhcccccccCce-------------------------E---EecCCcEEEEEEEe
Confidence 3457899999999999985 45666665443221 2 23378899999999
Q ss_pred CCceeEEEEeeh---hHhHhcCceEEEEEeCC
Q 036841 367 SNPGVWFMHCHR---EEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 367 ~npG~w~~HCHi---~~H~~~GM~~~~~V~~~ 395 (412)
+.||.+...|.- ..| ..|.+.+.|.+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 999999999997 456 778888888664
No 57
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.03 E-value=0.79 Score=40.63 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=59.5
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCC---CCCCCC--CCCCCCceeeEEeCCCcEEEEE
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEE---KDPLNY--NLIDPPLRTIVDVPISGWATVR 363 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~---~~~~~~--~~~np~~rDTv~vp~~~~~~vr 363 (412)
.+.++.|-.|.+++.|. ..+.| .|-|+..+....... .+...+ -...+.--..--|++|.....-
T Consensus 87 ~i~VPAGw~V~i~f~N~---~~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~ 156 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQ---ESLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGV 156 (196)
T ss_pred EEEEcCCCEEEEEEEcC---CCCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEE
Confidence 57889999999999997 34555 566665442211110 000000 0001100001123356666556
Q ss_pred EEcCCceeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 364 FRASNPGVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 364 ~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
+..-.+|.+.|=|-|.-|.+.||-+.|.|...
T Consensus 157 ~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 157 YNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 66777999999999999999999999999653
No 58
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=92.39 E-value=1.3 Score=38.68 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=58.3
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCC-CCC--CCCCCCCC--CCCCceeeEEeCCCcEEEE
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNF-DEE--KDPLNYNL--IDPPLRTIVDVPISGWATV 362 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~-~~~--~~~~~~~~--~np~~rDTv~vp~~~~~~v 362 (412)
..+.++.|-+|.++|.|.+ ...| .+-|+..+.... ... .+....++ ..+.--..=-+..|.....
T Consensus 85 mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred eEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 4688999999999999984 3343 455554432110 000 00000000 0000000001224556666
Q ss_pred EEEcCCceeEEEEeehhHhHhcCceEEEEEeCC
Q 036841 363 RFRASNPGVWFMHCHREEHLTWGMKTVFIVKNG 395 (412)
Q Consensus 363 r~~~~npG~w~~HCHi~~H~~~GM~~~~~V~~~ 395 (412)
-+....||.+-+=|-+.-|.++||-+.+.|-..
T Consensus 155 ~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 155 WWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 777778999999999999999999999998543
No 59
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=88.78 E-value=6.9 Score=31.79 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=28.9
Q ss_pred eEEEEEcCccEEEEeeCCCcc--CceEEeEEEECCCceEEEEEEecCC
Q 036841 75 MLFFSIANHDLTVVGTDGAYT--NPLTTSYITISPGQTLDVLLQANQN 120 (412)
Q Consensus 75 ~~~~sidgh~m~VIa~DG~~v--~P~~v~~l~l~~GqRydViv~~~~~ 120 (412)
++.+.-..++++|....+..- .+.....+.|.+|..|.+++.....
T Consensus 37 Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~~ 84 (122)
T PF14344_consen 37 YLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTAA 84 (122)
T ss_pred ceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCCC
Confidence 333333346677766655543 3555677888888888888877654
No 60
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=88.09 E-value=3.4 Score=34.24 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=46.0
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
..++..|++|+|+... ...|-.+.=+-. . |..-+++...++..... .++.
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~---------~--------------~~g~~~~~~~~~~s~~~--Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM---------D--------------PEGSGTLKAGINESFTH--TFET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC---------C--------------cccccccccCCCcceEE--Eecc
Confidence 4688899999987663 335655433322 0 00111222222344444 4445
Q ss_pred ceeEEEEeehhHhHhcCceEEEEEe
Q 036841 369 PGVWFMHCHREEHLTWGMKTVFIVK 393 (412)
Q Consensus 369 pG~w~~HCHi~~H~~~GM~~~~~V~ 393 (412)
||.+-|.|- .|..+||-+.+.|.
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeC
Confidence 999999996 89999999999985
No 61
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.72 E-value=2.7 Score=39.05 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=57.3
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-+.++.|+.|++.+... +..|.|.+.+-.+++ .+-||-...+.+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~k~----------------------------d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA----DVIHSFWIPQLGGKI----------------------------DAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEec----hhceeEEecCCCcee----------------------------eecCCceEEEEEec
Confidence 4457899999999999874 456666555543333 22368889999999
Q ss_pred CCceeEEEEeehhHh-HhcCceEEEEEeCCC
Q 036841 367 SNPGVWFMHCHREEH-LTWGMKTVFIVKNGE 396 (412)
Q Consensus 367 ~npG~w~~HCHi~~H-~~~GM~~~~~V~~~~ 396 (412)
+.+|.+..+|+..-= -...|-+.+.|.+.+
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 999999999997743 445677778777653
No 62
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=84.70 E-value=3.5 Score=32.43 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=40.1
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCC-ccCc-eEEeEEEECCCceEEEEEEecCCCceeEEEee
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGA-YTNP-LTTSYITISPGQTLDVLLQANQNPNLYYMASS 129 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~-~v~P-~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~ 129 (412)
+..++|++|++++| +|.+. ....+.++....- +|. ...+ ...+.+.+.||+.+++-++ + +|.|.....
T Consensus 16 P~~i~v~~G~~V~~--~N~~~-~~H~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pG~t~~~tF~--~-~G~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEW--VNNKG-GPHNVVFDEDAVP----AGVKELAKSLSHKDLLNSPGESYEVTFS--T-PGTYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEE--EECCC-CCceEEECCCCCc----cchhhhcccccccccccCCCCEEEEEeC--C-CEEEEEEcC
Confidence 35699999998765 47653 3344444322100 010 0111 1235678999999999555 3 599988765
No 63
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=84.06 E-value=4.3 Score=36.06 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEE--cCc---cEEEEeeCCCcc-----CceEEeEEEECCCceEEEEEEecCC
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSI--ANH---DLTVVGTDGAYT-----NPLTTSYITISPGQTLDVLLQANQN 120 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~si--dgh---~m~VIa~DG~~v-----~P~~v~~l~l~~GqRydViv~~~~~ 120 (412)
...+|.|..|=++.++++|.++. .++|-| .+- ..-.|+.||..+ .|-....--|.+||++..+....+
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~- 161 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLP- 161 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCC-
Confidence 34789999999999999998753 333333 221 245777887554 121122335679999998775443
Q ss_pred CceeEEEeec
Q 036841 121 PNLYYMASSV 130 (412)
Q Consensus 121 ~g~y~ir~~~ 130 (412)
+|.||+....
T Consensus 162 aG~YwlvC~i 171 (196)
T PF06525_consen 162 AGYYWLVCGI 171 (196)
T ss_pred CceEEEEccC
Confidence 5999998754
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=80.78 E-value=4.2 Score=34.65 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEEc------CccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCcee
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSIA------NHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLY 124 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~sid------gh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y 124 (412)
.+..+.++.|+++|+-+-|.+-.- ..|.++ +|.-..+.+| .++=-..+.+.|.||+--.+++.+.++ |.|
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~-g~y 136 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGA-GKY 136 (158)
T ss_pred CCCcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCC-ccE
Confidence 345689999999999999988643 233443 2333333344 222234568999999999999999986 999
Q ss_pred EEEeec
Q 036841 125 YMASSV 130 (412)
Q Consensus 125 ~ir~~~ 130 (412)
.++...
T Consensus 137 e~~C~i 142 (158)
T COG4454 137 EFACNI 142 (158)
T ss_pred EEEecC
Confidence 988753
No 65
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.51 E-value=25 Score=26.67 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=35.8
Q ss_pred EEEEEEecccCceEEEEEc-Cc--cEEEEeeCCCcc------C--ceEEeEEEECCCceEEEEEEecCC---CceeEEEe
Q 036841 63 YLLRIINAAMDEMLFFSIA-NH--DLTVVGTDGAYT------N--PLTTSYITISPGQTLDVLLQANQN---PNLYYMAS 128 (412)
Q Consensus 63 yRlRlINa~~~~~~~~sid-gh--~m~VIa~DG~~v------~--P~~v~~l~l~~GqRydViv~~~~~---~g~y~ir~ 128 (412)
..|++.|.+. ..+.|.+. |+ .+.|...+|..| + .+......|.|||...+-...+.. +|.|.+.+
T Consensus 4 ~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 3567777775 44455553 33 456666677666 1 234568899999999988888773 68898764
No 66
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.51 E-value=25 Score=31.49 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=54.4
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
+...++.|+.+++.+... +..|.|.+.+...+ +|.+ ||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~k-------------------------~d~~---PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNLK-------------------------MDAI---PGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCce-------------------------eecC---CCceEEEEEEcC
Confidence 346889999999999874 56787776554222 2222 688899999999
Q ss_pred CceeEEEEeehhHhH-hcCceEEEEEeCC
Q 036841 368 NPGVWFMHCHREEHL-TWGMKTVFIVKNG 395 (412)
Q Consensus 368 npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 395 (412)
.+|.+...|.-.-=. ...|-..+.|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999865332 3456666776554
No 67
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=76.21 E-value=11 Score=34.57 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=56.2
Q ss_pred CceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEE
Q 036841 286 GTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFR 365 (412)
Q Consensus 286 ~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~ 365 (412)
..+...++.|+.|++.+.+. +..|.|.+-+...++ .+-||....+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~k~----------------------------d~~Pg~~~~~~~~ 185 (228)
T MTH00140 138 VDNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGVKV----------------------------DAIPGRLNQLSFE 185 (228)
T ss_pred cCCeEEEeeCcEEEEEEEcC----ccccceeccccCcee----------------------------ECCCCcceeEEEE
Confidence 34467899999999999985 456766665442221 2236888899999
Q ss_pred cCCceeEEEEeehhHhH-hcCceEEEEEeCC
Q 036841 366 ASNPGVWFMHCHREEHL-TWGMKTVFIVKNG 395 (412)
Q Consensus 366 ~~npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 395 (412)
++.||.+...|.-.=.. ...|-..+.|.+.
T Consensus 186 ~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 186 PKRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred eCCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 99999999999876543 4557777777654
No 68
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=75.63 E-value=13 Score=26.85 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=36.7
Q ss_pred eEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEee
Q 036841 53 FTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASS 129 (412)
Q Consensus 53 ~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~ 129 (412)
+.|+++.|+++++.+-+.+. ...|.|...+|..+....-.. -..|..--+.+.+.+ +|.|+|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 67999999998888765554 333667777765432211111 001222223344443 599999875
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=73.91 E-value=21 Score=37.72 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=22.9
Q ss_pred EEECCCceEEEEEEecCCCceeEEEeec
Q 036841 103 ITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 103 l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
+.+.||+...|-++++++ |.||+...-
T Consensus 591 ~dv~PG~t~svtF~adkP-Gvy~~~Cte 617 (635)
T PRK02888 591 MEVAPQATASVTFTADKP-GVYWYYCTW 617 (635)
T ss_pred EEEcCCceEEEEEEcCCC-EEEEEECCc
Confidence 567899999999999986 999988754
No 70
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=69.99 E-value=16 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=28.5
Q ss_pred EEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEE
Q 036841 55 LTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLD 112 (412)
Q Consensus 55 ~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRyd 112 (412)
|++.+|+..+||.-.+ ..|.+.+-.++|.. ||. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 6778899888885433 23777777877765 552 2334455555544
No 71
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=69.78 E-value=37 Score=28.05 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=44.9
Q ss_pred EEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc-------CceEEeEEEECCCceEEEEEEecCCCc
Q 036841 54 TLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-------NPLTTSYITISPGQTLDVLLQANQNPN 122 (412)
Q Consensus 54 ~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-------~P~~v~~l~l~~GqRydViv~~~~~~g 122 (412)
.|++...-.|+|++-. ....+|.|||.. ||+.++..- .+.....+.+..|++|+|-|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~---~d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTS---DDGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEE---SSEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEe---cccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 3666555679999983 335677799877 577776543 455678899999999999999876433
No 72
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=68.55 E-value=23 Score=30.53 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=52.1
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
+...++.|..|++.+... ...|.|.+-+--.. .|. -||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgvK-------------------------~Da---vPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGIK-------------------------ADA---IPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCce-------------------------eec---cCCceEEEEEecC
Confidence 346889999999988874 45677666544222 222 2677788999999
Q ss_pred CceeEEEEeehh---HhHhcCceEEEEEeC
Q 036841 368 NPGVWFMHCHRE---EHLTWGMKTVFIVKN 394 (412)
Q Consensus 368 npG~w~~HCHi~---~H~~~GM~~~~~V~~ 394 (412)
.+|.+...|.-. .| ..|-..+.|.+
T Consensus 121 ~~G~y~gqCsElCG~gH--s~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLH--GFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCc--cCceEEEEEeC
Confidence 999999999865 35 34777776654
No 73
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=68.03 E-value=49 Score=27.11 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=40.6
Q ss_pred EEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc-CceEEeEEEECCCceEEEEEEecCCCc
Q 036841 55 LTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-NPLTTSYITISPGQTLDVLLQANQNPN 122 (412)
Q Consensus 55 ~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-~P~~v~~l~l~~GqRydViv~~~~~~g 122 (412)
|++...-.|+|.+.. ....+|.|+|.. ||+.++..- .+.....+.|..|++|.|.|...+..+
T Consensus 52 i~~~~~G~y~f~~~~---~~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITS---DDGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEc---CCcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 555444569998843 334567888763 555554332 233445788999999999998866444
No 74
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=67.95 E-value=65 Score=26.25 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=43.9
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeec
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
...+.++.|+.+||+|-+.- -...|.|.+..++ +.+-||+.-.+-++++++ |.|+++..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~~-G~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDKP-GTYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESSS-EEEEEEE-S
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeeccC-CcEEEcCcc
Confidence 36799999999999998744 4555667766544 345678888888888775 999999754
No 75
>PRK02710 plastocyanin; Provisional
Probab=60.13 E-value=37 Score=27.58 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=38.1
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEee
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASS 129 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~ 129 (412)
+..+++++|++++| +|... ...++.+++. +......+.+.+|+.+++.++. +|.|.....
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~-~~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKL-APHNAVFDGA------------KELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCC-CCceEEecCC------------ccccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 46799999998655 57643 2344444421 1111234668999999977664 588877765
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=59.56 E-value=53 Score=27.08 Aligned_cols=68 Identities=16% Similarity=0.316 Sum_probs=0.0
Q ss_pred EEEEec-CCEEEEEEEecccCceEEEEEcCccEEEE---------------eeCCCcc----CceEEeEEEECCCceEEE
Q 036841 54 TLTVDE-GKTYLLRIINAAMDEMLFFSIANHDLTVV---------------GTDGAYT----NPLTTSYITISPGQTLDV 113 (412)
Q Consensus 54 ~~~v~~-Gk~yRlRlINa~~~~~~~~sidgh~m~VI---------------a~DG~~v----~P~~v~~l~l~~GqRydV 113 (412)
.|+|++ +|...+.|-|.+. +--..-||.+.|. +.|-+|| .-+...+=.|.+||..+|
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~---lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGK---LPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred EEEEcCCCcEEEEEEecCCc---CchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Q ss_pred EEEec--CCCcee
Q 036841 114 LLQAN--QNPNLY 124 (412)
Q Consensus 114 iv~~~--~~~g~y 124 (412)
-++++ +++++|
T Consensus 94 tF~~~~l~~g~~Y 106 (125)
T TIGR02695 94 TFDVSKLSAGEDY 106 (125)
T ss_pred EEECCCCCCCCcc
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=57.01 E-value=71 Score=32.43 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=52.1
Q ss_pred ceEEEEecC--CEEEEEEEecccC--ceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceE--EEEEEecC--CCce
Q 036841 52 TFTLTVDEG--KTYLLRIINAAMD--EMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTL--DVLLQANQ--NPNL 123 (412)
Q Consensus 52 ~~~~~v~~G--k~yRlRlINa~~~--~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRy--dViv~~~~--~~g~ 123 (412)
++.+++.+| +..|+++-|.|.. .-+.+.|++-+=|=|++|+.-+ +. |.||+|- ++-|++++ .+|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 467888888 5568999999965 4788888887778888888743 22 4555554 44455554 3589
Q ss_pred eEEEeecccc
Q 036841 124 YYMASSVYST 133 (412)
Q Consensus 124 y~ir~~~~~~ 133 (412)
|.++.++...
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9988776433
No 78
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=56.31 E-value=30 Score=26.98 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=41.6
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCc-------cCceEEeEEEECCCceEEEEEEecCCCce
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAY-------TNPLTTSYITISPGQTLDVLLQANQNPNL 123 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~-------v~P~~v~~l~l~~GqRydViv~~~~~~g~ 123 (412)
.+..++|++|+++ +++|... -+|.+.+.+ |+.. +.+.. ....+.+|+.+++-++ .+|.
T Consensus 15 ~P~~i~V~~G~tV--~~~n~~~--------~~Hnv~~~~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~tF~---~~G~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTV--TFVNNDS--------MPHNVVFVA-DGMPAGADSDYVPPGD-SSPLLAPGETYSVTFT---KPGT 79 (99)
T ss_dssp ESSEEEEETTEEE--EEEEESS--------SSBEEEEET-TSSHTTGGHCHHSTTC-EEEEBSTTEEEEEEEE---SSEE
T ss_pred eCCEEEECCCCEE--EEEECCC--------CCceEEEec-ccccccccccccCccc-cceecCCCCEEEEEeC---CCeE
Confidence 3467999999876 4566522 235544444 3321 12222 6778999999999777 4488
Q ss_pred eEEEeec
Q 036841 124 YYMASSV 130 (412)
Q Consensus 124 y~ir~~~ 130 (412)
|.....+
T Consensus 80 y~y~C~P 86 (99)
T PF00127_consen 80 YEYYCTP 86 (99)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9888764
No 79
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=55.03 E-value=39 Score=31.00 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=52.1
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
-..++.|+.|++.+... +..|.|.+- +.+ ..+|.+ ||-...+.|+++.
T Consensus 140 el~lP~g~pV~~~ltS~----DViHSF~VP-------~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSN----SVMNSFFIP-------QLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEEC----chhhhhhhh-------hcC------------------CeeecC---CCceEEEEEEeCC
Confidence 46889999999999975 456655443 322 134443 6888899999999
Q ss_pred ceeEEEEeehhHh-HhcCceEEEEEeCC
Q 036841 369 PGVWFMHCHREEH-LTWGMKTVFIVKNG 395 (412)
Q Consensus 369 pG~w~~HCHi~~H-~~~GM~~~~~V~~~ 395 (412)
||.+.-.|--.-= ....|...+.|.+.
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999974421 12557777776554
No 80
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.21 E-value=67 Score=29.73 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=54.6
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...+|.|+.|++.+... +..|.|.+-.-... +|.+ ||-...+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgvK-------------------------~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGLK-------------------------IDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCce-------------------------eecC---CCcceeEEEEc
Confidence 4457899999999999874 56787766554222 2322 67778889999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeCC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKNG 395 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 395 (412)
+.||.+.-.|.-.--. ..-|-..++|.+.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999999865433 3456666666543
No 81
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=52.23 E-value=67 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=53.8
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-..+|.|+.|++.+.+. +..|.|.+-+...++ | .-||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~k~-------------------------d---aiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGVKV-------------------------D---AVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCcce-------------------------e---cCCCceEEEEEEe
Confidence 4457889999999999985 456766665543222 2 2268888899999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.||.+...|.-.=.. ..-|-..+.|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999865433 345666666654
No 82
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.36 E-value=1.1e+02 Score=23.15 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=39.9
Q ss_pred EEecCCEEE--EEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEE-EECCCceEEEEEEecC-CCceeEEEeec
Q 036841 56 TVDEGKTYL--LRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYI-TISPGQTLDVLLQANQ-NPNLYYMASSV 130 (412)
Q Consensus 56 ~v~~Gk~yR--lRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l-~l~~GqRydViv~~~~-~~g~y~ir~~~ 130 (412)
.+..|+..+ +.+-|.|....-.+.+. +-.||..+ ....| .|.+|+-..+-+.... .+|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 456677775 67779887653333332 23455554 33344 7899999999888876 46888888765
No 83
>PF08685 GON: GON domain; InterPro: IPR012314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The ADAMTSs (a disintegrin and metalloproteinase domain with thrombospondin type-1 modules) are a family of zinc dependent metalloproteinases that play important roles in a variety of normal and pathological conditions. These enzymes show a complex domain organisation including signal sequence, propeptide, metalloproteinase domain (see PDOC50215 from PROSITEDOC), disintegrin-like domain (see PDOC00351 from PROSITEDOC), central TS-1 motif (see PDOC50092 from PROSITEDOC), cysteine-rich region, and a variable number of TS-like repeats at the C-terminal region. The GON domain is an approximately 200-residue module, whose presence is the hallmark of a subfamily of structurally and evolutionarily related ADAMTSs, called GON- ADAMTSs. The GON domain is characterised by the presence of several conserved cysteine residues and is likely to be globular [], []. Some proteins known to contain a GON domain are listed below: Mammalian ADAMTS-9 Mammalian ADAMTS-20 Caenorhabditis elegans gon-1, a protease required for gonadal morphogenesis Proteins containing the GON domain belong to MEROPS peptidase subfamily M12B (adamalysin, clan MA).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding
Probab=49.59 E-value=22 Score=31.88 Aligned_cols=93 Identities=16% Similarity=0.297 Sum_probs=57.4
Q ss_pred eEEEcCccCCCCCCCC----CCceEEEEecC------CEEEEEEEec----------------------ccCceEEEEEc
Q 036841 34 AFTINGQPGDLYPCSS----SETFTLTVDEG------KTYLLRIINA----------------------AMDEMLFFSIA 81 (412)
Q Consensus 34 ~~lING~~g~~~~c~~----~~~~~~~v~~G------k~yRlRlINa----------------------~~~~~~~~sid 81 (412)
.++|+|+..+.| |+. .....|++..| +.|..||.|. |....-.|+||
T Consensus 21 ~L~v~g~~~~IY-Ch~M~s~~PkEYltL~~G~~eNyae~y~~Rl~~~~~Cp~ng~~~~~c~c~~~~~~aG~T~F~KvRid 99 (201)
T PF08685_consen 21 TLYVQGRPLKIY-CHGMASSTPKEYLTLPSGPQENYAEVYGKRLQNPSECPYNGSRRDDCNCRNDYAAAGRTRFSKVRID 99 (201)
T ss_pred EEEECCEEEEEE-cCCCCCCCCceeEEcCCCCccchheecchhccCCCcCCCCCCCCCCCCCcccccccceeEEEEEEEc
Confidence 467888855443 653 22344777744 4555677654 33456788999
Q ss_pred CccEEEEeeCCCccCceEEeEEEE-CCCceEEEEEEecCCCceeEEEeec
Q 036841 82 NHDLTVVGTDGAYTNPLTTSYITI-SPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 82 gh~m~VIa~DG~~v~P~~v~~l~l-~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
=++|.|+..|-.+-+...-..+.. ..|..|+.. .++| |.|.|..+.
T Consensus 100 ~~tl~I~~~D~tFa~t~~G~~v~~~tAGDCyS~~-~Cpq--G~FsIdL~G 146 (201)
T PF08685_consen 100 PSTLRIITNDFTFARTTGGNPVPFGTAGDCYSAA-RCPQ--GRFSIDLRG 146 (201)
T ss_pred ccccEEEeCCceEeeccCCcccCccccccccccC-CCCC--ceEEEeeCC
Confidence 999999999988763221112211 357788777 5554 777776643
No 84
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=47.52 E-value=73 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=28.9
Q ss_pred CEEEEEEEecccCc-eEEEEEcCc-cEEEEeeCCCccCceEEeEEEECCCceEEEEEEec
Q 036841 61 KTYLLRIINAAMDE-MLFFSIANH-DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQAN 118 (412)
Q Consensus 61 k~yRlRlINa~~~~-~~~~sidgh-~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~ 118 (412)
..|+|+|+|-+... .+.++++|. .+++. . ....+.|.+|+..++-+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 46899999999764 888888874 34441 1 23567888888777666554
No 85
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.39 E-value=1.2e+02 Score=27.95 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=51.8
Q ss_pred CceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEE
Q 036841 286 GTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFR 365 (412)
Q Consensus 286 ~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~ 365 (412)
..+-..+|.|+.+++.+... +..|.|-+-+.-. ..|. -||....+.+.
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~-------------------------k~da---iPG~~~~~~~~ 185 (230)
T MTH00185 138 TDHRMVVPMESPIRVLITAE----DVLHSWTVPALGV-------------------------KMDA---VPGRLNQATFI 185 (230)
T ss_pred cCCeEEEecCCEEEEEEEcC----cccccccccccCc-------------------------eeEe---cCCceEEEEEE
Confidence 34457899999999999875 4566554444322 2222 26888888999
Q ss_pred cCCceeEEEEeehhHhHh-cCceEEEEEeC
Q 036841 366 ASNPGVWFMHCHREEHLT-WGMKTVFIVKN 394 (412)
Q Consensus 366 ~~npG~w~~HCHi~~H~~-~GM~~~~~V~~ 394 (412)
++.||.+.-.|.-.=... .-|-..+.|.+
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 186 ISRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred eCCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 999999999998653332 34556665544
No 86
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.37 E-value=96 Score=28.48 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...+|.|..+++.+... +..|.|.+-..-. .+|.+ ||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~-------------------------k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSA----DVLHSWAVPSLGV-------------------------KMDAV---PGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEEC----CccccccccccCc-------------------------eeecC---CCceEEEEEEc
Confidence 4457899999999988874 5677766654321 23332 68888899999
Q ss_pred CCceeEEEEeehhHhHh-cCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHLT-WGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~~-~GM~~~~~V~~ 394 (412)
+.||.+...|.-.--.. .-|-..+.|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 99999999998664432 33555555543
No 87
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=42.98 E-value=80 Score=28.70 Aligned_cols=75 Identities=9% Similarity=-0.034 Sum_probs=51.1
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
-..++.|..|++.+... +..|.| +|=+.+ ..+|.+ ||-...+.|.++.
T Consensus 131 ~l~iP~g~~v~~~ltS~----DViHsf-------~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSA----DTMTSF-------WIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECC----chhhhh-------hchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 46889999999999975 455654 442221 134444 6888999999999
Q ss_pred ceeEEEEeehhHh-HhcCceEEEEEeCC
Q 036841 369 PGVWFMHCHREEH-LTWGMKTVFIVKNG 395 (412)
Q Consensus 369 pG~w~~HCHi~~H-~~~GM~~~~~V~~~ 395 (412)
||.+--.|--.-= ...-|...+.|.+.
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 9999999974321 12356666666544
No 88
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=42.84 E-value=1.1e+02 Score=28.09 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=51.6
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...+|.|+.|++.+... +..|.|. |=+.| +..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~-------ip~lg------------------~k~da---iPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSE----DVLHSWA-------VPSLG------------------LKTDA---IPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEEC----ccccccc-------ccccc------------------cceec---CCCceEEEEEec
Confidence 3467899999999999875 4555544 43222 12222 268888999999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.||.+...|.-.-.. ..-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999999875433 245666666654
No 89
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=40.22 E-value=57 Score=27.24 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=33.1
Q ss_pred eEEEcCccCCCCCCC--CCCceEEEEecCCEE--EEEEEecccCceEEEEEcCccEEEEeeCCCccCceEE
Q 036841 34 AFTINGQPGDLYPCS--SSETFTLTVDEGKTY--LLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTT 100 (412)
Q Consensus 34 ~~lING~~g~~~~c~--~~~~~~~~v~~Gk~y--RlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v 100 (412)
.++.||+.. +... ++....|+++.|-+| +.+|+|+.. +.- | +.+..+|-.+||..+.|...
T Consensus 56 kly~dG~~V--~tG~~~~~~~a~~~~~~gG~y~~~VeLCN~~G-CS~--S-~~~~V~VaDTDGsHl~pL~~ 120 (133)
T PF08329_consen 56 KLYFDGVLV--WTGPSPQQKSATFTVTKGGRYQMQVELCNADG-CST--S-APVEVVVADTDGSHLAPLPY 120 (133)
T ss_dssp EEEETTEEE--EEEE--SEEEEEEEE-S-EEEEEEEEEEETTE-EEE------EEEEEE-TTSTTS-----
T ss_pred EEEECCEEE--EeCCCccCceEEEEecCCCEEEEEEEEECCCC-ccc--C-CCEEEEEeCCCccccccccC
Confidence 357777631 1111 123357889888777 578899988 222 1 25578899999999988654
No 90
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=40.01 E-value=1.7e+02 Score=22.39 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=41.7
Q ss_pred EecCCEEEEEEE--ecccCceEEEEEcCc--cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCC--CceeEEEeec
Q 036841 57 VDEGKTYLLRII--NAAMDEMLFFSIANH--DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQN--PNLYYMASSV 130 (412)
Q Consensus 57 v~~Gk~yRlRlI--Na~~~~~~~~sidgh--~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~--~g~y~ir~~~ 130 (412)
-+||+++.||.+ +... . .-...++ .++|..-+|..+.-... ........++.-+..++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 578999999999 6662 1 0111222 46677777766532222 134677788888888764 5899999875
No 91
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=39.87 E-value=35 Score=22.92 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=32.1
Q ss_pred CCCCCceeeEE-eCCCcEEEEEEEcCCceeEEEEeehhHhHhc
Q 036841 343 LIDPPLRTIVD-VPISGWATVRFRASNPGVWFMHCHREEHLTW 384 (412)
Q Consensus 343 ~~np~~rDTv~-vp~~~~~~vr~~~~npG~w~~HCHi~~H~~~ 384 (412)
+..|+.+-+.. .+.|....+++....-..+=+||....|...
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34565555333 4568889999999999999999999999754
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=39.07 E-value=31 Score=26.09 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.8
Q ss_pred EEEECCCceEEEEEE
Q 036841 102 YITISPGQTLDVLLQ 116 (412)
Q Consensus 102 ~l~l~~GqRydViv~ 116 (412)
.|...+|||||++|.
T Consensus 17 ~l~f~sgq~~D~~v~ 31 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVK 31 (82)
T ss_dssp EEEESSS--EEEEEE
T ss_pred EEEeCCCCEEEEEEE
Confidence 578899999999999
No 93
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=39.02 E-value=1.4e+02 Score=24.11 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=40.9
Q ss_pred EEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc-C---ceEEeEEEECCCceEEEEEEecC--CCceeEEEee
Q 036841 56 TVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-N---PLTTSYITISPGQTLDVLLQANQ--NPNLYYMASS 129 (412)
Q Consensus 56 ~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-~---P~~v~~l~l~~GqRydViv~~~~--~~g~y~ir~~ 129 (412)
.+..|+..++|+--......-.+.+ .+.+...||..+ . ......+....|+++.+.++++. .+|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 3667788877776544433333332 566777777665 1 11112444555999999999987 4799999987
Q ss_pred c
Q 036841 130 V 130 (412)
Q Consensus 130 ~ 130 (412)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 6
No 94
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.86 E-value=1.3e+02 Score=27.78 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=52.5
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...++.|+.+++.+.+. +..|.|.+-+... ..|. -||....+.|.+
T Consensus 143 dn~lvlP~~~~v~~~itS~----DViHsf~vp~lg~-------------------------k~da---iPG~~~~~~~~~ 190 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAA----DVLHSFAVPSLSV-------------------------KIDA---VPGRLNQTSFFI 190 (234)
T ss_pred ceEEEEecCcEEEEEEEeC----chhccccccccCc-------------------------eeEc---cCCceEeEEEEe
Confidence 4467899999999999985 4566665544321 2222 267788889999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeCC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKNG 395 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 395 (412)
+.||.+---|.-.=-. ..-|-..+.|.+.
T Consensus 191 ~~~G~y~g~Cse~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 191 KRPGVFYGQCSEICGANHSFMPIVIEGVSL 220 (234)
T ss_pred CCCEEEEEEChhhcCcccccCeeEEEEECH
Confidence 9999999999864322 2446666666543
No 95
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.51 E-value=1.1e+02 Score=27.99 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=52.3
Q ss_pred CceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEE
Q 036841 286 GTEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFR 365 (412)
Q Consensus 286 ~~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~ 365 (412)
..+...++.|+.|++.+... +..|.|.+-.- | ..+|.+ ||-...+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~----DViHsf~vP~l-------~------------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAA----DVLHSWTVPSL-------G------------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred cCceEEEecCCEEEEEEecC----ccccceecccc-------C------------------ccccCC---CCcEEEEEEE
Confidence 34567899999999988874 46676655432 2 133333 6888889999
Q ss_pred cCCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 366 ASNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 366 ~~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
++.||.+.-.|--.-=. ..-|-..+.|.+
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 99999999999754322 234555665544
No 96
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.00 E-value=1.2e+02 Score=27.93 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.3
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-..+|.|+.+++.+... +..| +|+|-+.|. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViH-------sf~ip~~~~------------------k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAE----DVLH-------SWAVPALGV------------------KMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeC----cccc-------ceeccccCC------------------cccc---CCCceEEEEEEe
Confidence 3457889999999999875 3454 455544331 2222 268888899999
Q ss_pred CCceeEEEEeehhHh-HhcCceEEEEEeCC
Q 036841 367 SNPGVWFMHCHREEH-LTWGMKTVFIVKNG 395 (412)
Q Consensus 367 ~npG~w~~HCHi~~H-~~~GM~~~~~V~~~ 395 (412)
+.||.+...|.-.=- ....|-..++|.+.
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEECH
Confidence 999999999986432 23556666666543
No 97
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=37.48 E-value=81 Score=30.51 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=49.6
Q ss_pred EEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcCC
Q 036841 289 VKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRASN 368 (412)
Q Consensus 289 ~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~n 368 (412)
-..++.|..|++.+... +..|.|.+- +.+. ..|.+ ||-...+.|.++.
T Consensus 152 eL~iP~g~pV~f~lTS~----DViHSF~IP-------~Lg~------------------K~dam---PG~~n~l~~~a~~ 199 (315)
T PRK10525 152 EIAFPANVPVYFKVTSN----SVMNSFFIP-------RLGS------------------QIYAM---AGMQTRLHLIANE 199 (315)
T ss_pred cEEEecCCEEEEEEEEc----hhhhhhhhh-------hhCC------------------eeecC---CCceeEEEEEcCC
Confidence 46889999999999975 455655444 2221 22322 6888899999999
Q ss_pred ceeEEEEeehhHh-HhcCceEEEEEe
Q 036841 369 PGVWFMHCHREEH-LTWGMKTVFIVK 393 (412)
Q Consensus 369 pG~w~~HCHi~~H-~~~GM~~~~~V~ 393 (412)
+|.+.-.|--.-= --..|...+.+.
T Consensus 200 ~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 200 PGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CEEEEEEChhhcCccccCCeEEEEEE
Confidence 9999999975422 224566666554
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.06 E-value=92 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=28.5
Q ss_pred EEEEEEEecccCceEEEEEcCccEEEEeeCCCcc----CceEEeEEEECCCceEE
Q 036841 62 TYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT----NPLTTSYITISPGQTLD 112 (412)
Q Consensus 62 ~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v----~P~~v~~l~l~~GqRyd 112 (412)
.|++||-|.+.. .+.|-.....+...||... +-+.-..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 478999997754 3555566666766666422 11222233488888654
No 99
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=36.66 E-value=1.3e+02 Score=30.56 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=29.0
Q ss_pred EEeCCCcEEEEEEEcCCceeEEEEeehhHh-HhcCceEEEEE
Q 036841 352 VDVPISGWATVRFRASNPGVWFMHCHREEH-LTWGMKTVFIV 392 (412)
Q Consensus 352 v~vp~~~~~~vr~~~~npG~w~~HCHi~~H-~~~GM~~~~~V 392 (412)
+.+.|....++-|+++-||.|++-|--.-| +.+-|.+-++|
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlv 635 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLV 635 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceee
Confidence 445677788999999999999988765555 33445554444
No 100
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.22 E-value=1.6e+02 Score=27.07 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=51.8
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...+|.|..+++.+... +..|.|.+-+.-. ..|.+ ||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~lg~-------------------------k~da~---PG~~n~~~~~~ 186 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAE----DVLHSWAVPSLGI-------------------------KTDAI---PGRLNQTSFIA 186 (228)
T ss_pred CceEEEecCCEEEEEEEec----cccccccccccCc-------------------------eEEcc---CCcceeEEEEe
Confidence 4467899999999999875 4566555443321 22222 67888889999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.||.+--.|.-.-.. ...|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 187 SRPGVYYGQCSEICGANHSFMPIVVEATP 215 (228)
T ss_pred CCcEEEEEEChhhcCccccCCceEEEEeC
Confidence 9999999999865332 345666666544
No 101
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.98 E-value=1.5e+02 Score=27.10 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...++.|..+++.+... +..|.|-+-. .| ..+|.+ ||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~vP~-------lg------------------~K~Dav---PG~~n~~~~~~ 186 (227)
T MTH00117 139 DHRMVIPMESPIRILITAE----DVLHSWAVPS-------LG------------------VKTDAV---PGRLNQTSFIT 186 (227)
T ss_pred cceEEEecCceEEEEEEec----chhhcccccc-------cC------------------ceeEec---CCceEEEEEEE
Confidence 3457899999999999875 4555544433 22 123332 68888899999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.||.+.-.|--.=.. ...|-..+.|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFMPIVVESVP 215 (227)
T ss_pred cccceEEEEeccccccCccCCeEEEEEcC
Confidence 9999999999865332 244666666544
No 102
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.88 E-value=1.4e+02 Score=27.27 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-..+|.|+.+++.+... +..|.|-+-.-.. .+|.+ ||-...+.|.+
T Consensus 139 dn~l~lP~~~~v~~~~tS~----DViHsf~vp~l~~-------------------------k~dav---PG~~~~~~~~~ 186 (227)
T MTH00154 139 DNRLVLPMNTQIRILITAA----DVIHSWTVPSLGV-------------------------KVDAV---PGRLNQLNFLI 186 (227)
T ss_pred cceEEEecCCEEEEEEEcC----chhhheeccccCC-------------------------eeecC---CCceEEEEEEE
Confidence 3457899999999988874 4567665544211 23333 68888899999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.||.+.-.|.-.==. ..-|-..+.|.+
T Consensus 187 ~~~G~y~g~Cse~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 187 NRPGLFFGQCSEICGANHSFMPIVIESVS 215 (227)
T ss_pred cCceEEEEEeechhCcCccCCeEEEEEeC
Confidence 9999999999855322 245666666654
No 103
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.83 E-value=1.4e+02 Score=30.40 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=34.1
Q ss_pred CEEEEEEEecccC-ceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecC
Q 036841 61 KTYLLRIINAAMD-EMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 61 k~yRlRlINa~~~-~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~ 119 (412)
..|+++|.|.+.. ..+.++++|.+---+.. +. +.+.+.+||..++.|....
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~------~~--~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEG------PG--APIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEc------CC--ceEEECCCCEEEEEEEEEe
Confidence 5689999998865 48888887743211111 11 2789999999877666544
No 104
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=33.60 E-value=93 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=29.6
Q ss_pred CccCceEEeEEEECCCceEEEEEEecCCCceeEEEeec
Q 036841 93 AYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 93 ~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
+-..++..+.|...-..|..++|-++-+.|.|.|.++.
T Consensus 48 g~~~~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~T 85 (102)
T PF14734_consen 48 GTETKVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRT 85 (102)
T ss_pred CceEEecHHHeEeCCCcEEEEECcCccCceEEEEEEEE
Confidence 33345566678889999999999987777999998764
No 105
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=31.38 E-value=77 Score=24.47 Aligned_cols=48 Identities=17% Similarity=0.401 Sum_probs=22.6
Q ss_pred EEEEEEEecccCceEEEEEcCccEEEEeeCCCcc--C-c-eEEeEEEECCCceEE
Q 036841 62 TYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT--N-P-LTTSYITISPGQTLD 112 (412)
Q Consensus 62 ~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v--~-P-~~v~~l~l~~GqRyd 112 (412)
.|++||-|.+... +.|-...+.|...||... + + +.-..=.|.|||.+.
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~ 66 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFE 66 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEE
Confidence 4789999988772 344444555555555221 0 0 001122478888543
No 106
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.34 E-value=1.7e+02 Score=26.85 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=53.0
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+-..+|.|+.+++.+... +..|.|.+-.-.. .+|.+ ||-...+.|.+
T Consensus 142 dn~l~lP~~~~v~~~itS~----DViHSf~vP~lg~-------------------------K~Dav---PGr~n~~~~~~ 189 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSS----DVIHSWALPSLSI-------------------------KMDAM---SGILSTLCYSF 189 (231)
T ss_pred eCceEeecCcEEEEEEEeC----cccccccccccCc-------------------------eeecc---CCceEEEEEEE
Confidence 3446889999999999974 5677766654311 23333 67788899999
Q ss_pred CCceeEEEEeehhHh-HhcCceEEEEEeCC
Q 036841 367 SNPGVWFMHCHREEH-LTWGMKTVFIVKNG 395 (412)
Q Consensus 367 ~npG~w~~HCHi~~H-~~~GM~~~~~V~~~ 395 (412)
+.||.+.-.|--.== ....|-..+.|.+.
T Consensus 190 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 190 PMPGVFYGQCSEICGANHSFMPIAVEVTLL 219 (231)
T ss_pred cCceEEEEEehhhcCcCccCCEEEEEEECH
Confidence 999999999974421 12457777766543
No 107
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=30.53 E-value=2.9e+02 Score=22.35 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=40.5
Q ss_pred CceEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeec
Q 036841 51 ETFTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
.+..++|++|.+++|...+.+ |..+. .++ ..|...+.+...+|+.|++-+ ++ +|.|......
T Consensus 13 ~P~~v~V~~GdTV~f~n~d~~-----------Hnv~~--~~~--~~p~g~~~~~s~~g~~~~~tF--~~-~G~Y~Y~C~p 74 (116)
T TIGR02375 13 EPAYIRAAPGDTVTFVPTDKG-----------HNVET--IKG--MIPEGAEAFKSKINEEYTVTV--TE-EGVYGVKCTP 74 (116)
T ss_pred eCCEEEECCCCEEEEEECCCC-----------eeEEE--ccC--CCcCCcccccCCCCCEEEEEe--CC-CEEEEEEcCC
Confidence 356799999998887776642 22221 111 011112222234566666544 44 4888777653
Q ss_pred ccccccccccCCccEEEEEEEcC
Q 036841 131 YSTVVNLDFINNTTATAVLQYNG 153 (412)
Q Consensus 131 ~~~~~~~~~~~~~~~~ail~y~~ 153 (412)
-. .....+.|.+..
T Consensus 75 H~---------~~GM~G~V~Vg~ 88 (116)
T TIGR02375 75 HY---------GMGMVALIQVGD 88 (116)
T ss_pred Cc---------cCCCEEEEEECC
Confidence 21 233667777744
No 108
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=30.36 E-value=71 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=22.6
Q ss_pred EEEECCCceEEEEEEecC-------CCceeEEEeecccc
Q 036841 102 YITISPGQTLDVLLQANQ-------NPNLYYMASSVYST 133 (412)
Q Consensus 102 ~l~l~~GqRydViv~~~~-------~~g~y~ir~~~~~~ 133 (412)
.-.+.+||.|||.|+..= .-|.|-+.....+.
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~ 88 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSA 88 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcC
Confidence 345889999999998853 34677777665433
No 109
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=29.71 E-value=36 Score=23.86 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=31.5
Q ss_pred EEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecC
Q 036841 65 LRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 65 lRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~ 119 (412)
.++.+.+....+.+.++++. .+.+. +.+.....+.|.+|++.-+.+++.+
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~-~l~a~----it~~~~~~L~L~~G~~V~~~ik~~~ 61 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGE-TLTAR----ITPESAEELGLKPGDEVYASIKASS 61 (64)
T ss_dssp EEEEESSSEEEEEEEETTSE-EEEEE----EEHHHHHHCT-STT-EEEEEE-GGG
T ss_pred EEEEECCCeEEEEEEECCCC-EEEEE----EcHHHHHHcCCCCCCEEEEEEehhh
Confidence 45566677777777777776 33333 3445566788899999988888653
No 110
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=29.06 E-value=1.4e+02 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.6
Q ss_pred CceEEEEecCCEEEEEEEecc
Q 036841 51 ETFTLTVDEGKTYLLRIINAA 71 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~ 71 (412)
.+|.+++++|+.+.+|++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 467899999999999998765
No 111
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=28.90 E-value=2.3e+02 Score=20.66 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=30.3
Q ss_pred ecCCEE--EEEEEecccCc--eEEEEEcCccEEEEeeCCCcc--CceEEeEEEECCCceEEEEEEec--C--CCceeEEE
Q 036841 58 DEGKTY--LLRIINAAMDE--MLFFSIANHDLTVVGTDGAYT--NPLTTSYITISPGQTLDVLLQAN--Q--NPNLYYMA 127 (412)
Q Consensus 58 ~~Gk~y--RlRlINa~~~~--~~~~sidgh~m~VIa~DG~~v--~P~~v~~l~l~~GqRydViv~~~--~--~~g~y~ir 127 (412)
++|+.. .+.+-|.+... .+.++++. =+|=-+ .|..+. .|.+||...+-++.. + .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 455544 57777888543 34444432 233222 333344 789997666555553 3 36899998
Q ss_pred eec
Q 036841 128 SSV 130 (412)
Q Consensus 128 ~~~ 130 (412)
+.+
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 112
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.71 E-value=1.9e+02 Score=26.49 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=52.0
Q ss_pred ceEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEc
Q 036841 287 TEVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRA 366 (412)
Q Consensus 287 ~~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~ 366 (412)
.+...++.|+.+++.+... +..|.|.+-.- | ...|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~l-------g------------------~k~dai---PG~~n~~~~~~ 186 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSA----DVLHSWTLPSL-------G------------------LKMDAV---PGRLNQLAFLS 186 (225)
T ss_pred cceEEEecCCEEEEEEEeC----Chhhccccccc-------c------------------ccccCC---CCeEEEEEEEc
Confidence 4457899999999999874 46676655432 1 122322 68888899999
Q ss_pred CCceeEEEEeehhHhH-hcCceEEEEEeC
Q 036841 367 SNPGVWFMHCHREEHL-TWGMKTVFIVKN 394 (412)
Q Consensus 367 ~npG~w~~HCHi~~H~-~~GM~~~~~V~~ 394 (412)
+.+|.+--.|.-.-=. ..-|-..+.|.+
T Consensus 187 ~~~G~~~g~CsE~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 187 SRPGSFYGQCSEICGANHSFMPIVVEFVP 215 (225)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 9999999999855321 244556666654
No 113
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=27.67 E-value=4.4e+02 Score=23.44 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=36.0
Q ss_pred eEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCCceeEEEeec
Q 036841 53 FTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNPNLYYMASSV 130 (412)
Q Consensus 53 ~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~g~y~ir~~~ 130 (412)
..+.+..|+.+||++-+.... |.+.| |...-.+..-||..-.+-++++++ |.|..+..-
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~---------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~~-G~y~~~c~e 175 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI---------HSFWV---------PELGGKIDAIPGQYNALWFNADEP-GVYYGYCAE 175 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh---------hcccc---------cccCceEEecCCcEEEEEEEeCCC-EEEEEEehh
Confidence 356666666666665543321 22222 111223556789888888888875 999888754
No 114
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=27.23 E-value=4.4e+02 Score=23.33 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=54.5
Q ss_pred ceEEEEecCCEEEEEEEecccCceEEEEE-cCcc----EEEEeeCCCcc-----CceEEeEEEECCCceEEEEEEecCCC
Q 036841 52 TFTLTVDEGKTYLLRIINAAMDEMLFFSI-ANHD----LTVVGTDGAYT-----NPLTTSYITISPGQTLDVLLQANQNP 121 (412)
Q Consensus 52 ~~~~~v~~Gk~yRlRlINa~~~~~~~~si-dgh~----m~VIa~DG~~v-----~P~~v~~l~l~~GqRydViv~~~~~~ 121 (412)
..++-+..|-++.+-|+|... -+.++-| ..-+ --.++.||..+ .|..-..=-|.+||+-+...+.. .+
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e~-~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~-~~ 161 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYES-LPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT-SA 161 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCCC-CCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC-CC
Confidence 488999999999999999984 3344433 1111 12345566433 11111112356889977776655 45
Q ss_pred ceeEEEeecccccccccccCCccEEEEEEEcC
Q 036841 122 NLYYMASSVYSTVVNLDFINNTTATAVLQYNG 153 (412)
Q Consensus 122 g~y~ir~~~~~~~~~~~~~~~~~~~ail~y~~ 153 (412)
|.||+.....+-.+ ...++.|.+.+
T Consensus 162 G~YwlvCgipGHAe-------sGMw~~lIVSs 186 (195)
T TIGR03094 162 GKYWLVCGITGHAE-------SGMWAVVIVSS 186 (195)
T ss_pred eeEEEEcccCChhh-------cCcEEEEEEec
Confidence 99999875433322 23566666644
No 115
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=26.90 E-value=3.1e+02 Score=25.32 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=30.2
Q ss_pred eEEEEecCCEEEEEEEecccC--ceEEEEEcCccEEEEeeCCCccC
Q 036841 53 FTLTVDEGKTYLLRIINAAMD--EMLFFSIANHDLTVVGTDGAYTN 96 (412)
Q Consensus 53 ~~~~v~~Gk~yRlRlINa~~~--~~~~~sidgh~m~VIa~DG~~v~ 96 (412)
..+-+++| +|.||+|.-+-. .-....| +.-+.|+|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeE
Confidence 34678997 699999976632 2333445 456899999999875
No 116
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=26.32 E-value=1.6e+02 Score=25.40 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=37.6
Q ss_pred EEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCcc-----CceEEeEEEECCCce
Q 036841 56 TVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-----NPLTTSYITISPGQT 110 (412)
Q Consensus 56 ~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-----~P~~v~~l~l~~GqR 110 (412)
.+.. ++.+|+++|+|....+.++-.+.....+...|.++ .++....+.+.+|.|
T Consensus 68 ~~d~-~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~gd~ 126 (193)
T PF07228_consen 68 IIDP-ETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPLGIFEDIDYQEQEIQLEPGDR 126 (193)
T ss_dssp EEET-TTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBCSSSCTTCEEEEEEE--TTEE
T ss_pred Eecc-cceEEEEeCCCCCCEEEEeccccceeecccCccceeeeccccccceEEEeccccE
Confidence 3444 34579999999988887777677888888888876 235556677776665
No 117
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=25.89 E-value=98 Score=28.41 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.5
Q ss_pred CceEEEEecCCEEEEEEEeccc
Q 036841 51 ETFTLTVDEGKTYLLRIINAAM 72 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~ 72 (412)
.+|.|++++|+++.+|++..+.
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~ 97 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGP 97 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 4678999999999999998764
No 118
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=25.80 E-value=2.2e+02 Score=19.25 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=18.0
Q ss_pred EEEEEEEecccCceEEEEEcCccEEEEeeCCC
Q 036841 62 TYLLRIINAAMDEMLFFSIANHDLTVVGTDGA 93 (412)
Q Consensus 62 ~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~ 93 (412)
.++|||.--+. .+.+.|+.++++|....|.
T Consensus 9 ~l~F~~~~rg~--~l~v~i~~~~v~v~~~~g~ 38 (54)
T PF03633_consen 9 SLSFRLRYRGH--WLEVEITHEKVTVTLLSGD 38 (54)
T ss_dssp EEEEEEEETTE--EEEEEEETTEEEEEEEESS
T ss_pred EeEEEEEECCE--EEEEEEECCEEEEEEccCC
Confidence 45566555553 3666666666666666665
No 119
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=23.49 E-value=1.1e+02 Score=28.67 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.1
Q ss_pred CceEEEEecCCEEEEEEEecc
Q 036841 51 ETFTLTVDEGKTYLLRIINAA 71 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~ 71 (412)
.+|.|++++|++..+||+..+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred cCCeEEecCCCceEEEEEEcC
Confidence 457899999999999999875
No 120
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.25 E-value=96 Score=26.21 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=19.5
Q ss_pred eCCCcEEEEEEE-cCCc---eeEEEEeeh
Q 036841 354 VPISGWATVRFR-ASNP---GVWFMHCHR 378 (412)
Q Consensus 354 vp~~~~~~vr~~-~~np---G~w~~HCHi 378 (412)
|+||..+.|.++ ..|| |.|+|+|-.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 578999999994 4465 999999853
No 121
>COG1470 Predicted membrane protein [Function unknown]
Probab=22.64 E-value=3.6e+02 Score=27.59 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=29.1
Q ss_pred ceEEeEEEECCCceEEEEEEecC----CCceeEEEeeccc
Q 036841 97 PLTTSYITISPGQTLDVLLQANQ----NPNLYYMASSVYS 132 (412)
Q Consensus 97 P~~v~~l~l~~GqRydViv~~~~----~~g~y~ir~~~~~ 132 (412)
=..+++|.|.+||--||-|+... .+|.|-+...+.+
T Consensus 321 ~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 321 ELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 35889999999999999999854 4788887766543
No 122
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.51 E-value=2.3e+02 Score=20.76 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=20.0
Q ss_pred eEEEEecCCEEEEEEEecccCceEEEEEcCccEEEEeeCCCccC
Q 036841 53 FTLTVDEGKTYLLRIINAAMDEMLFFSIANHDLTVVGTDGAYTN 96 (412)
Q Consensus 53 ~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh~m~VIa~DG~~v~ 96 (412)
..-.+++|+.+.| .....+.+.+.+-.-.-+-.||..+.
T Consensus 22 ~~~~l~~G~~~~~-----~~~~~~~i~iGna~~v~v~~nG~~~~ 60 (77)
T PF13464_consen 22 FSGTLKAGETKTF-----EGKEPFRIRIGNAGAVEVTVNGKPVD 60 (77)
T ss_pred eeeeeCCCcEEEE-----eCCCCEEEEEeCCCcEEEEECCEECC
Confidence 4445556655554 33345555555555445555555553
No 123
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=22.20 E-value=1e+02 Score=28.60 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=18.9
Q ss_pred CceEEEEecCCEEEEEEEeccc
Q 036841 51 ETFTLTVDEGKTYLLRIINAAM 72 (412)
Q Consensus 51 ~~~~~~v~~Gk~yRlRlINa~~ 72 (412)
.+|.+++++|+...+||+..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 4578999999999999998775
No 124
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=22.11 E-value=1.2e+02 Score=21.34 Aligned_cols=47 Identities=6% Similarity=0.160 Sum_probs=27.0
Q ss_pred EecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecC
Q 036841 68 INAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 68 INa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~ 119 (412)
...+....+.+.+++.. .+.+. +.+..+..+.|.+|++.-+.++..+
T Consensus 17 ~~~g~~~~v~l~~~~~~-~l~a~----i~~~~~~~l~l~~G~~v~~~ik~~~ 63 (69)
T TIGR00638 17 EDGDVNAEVDLLLGGGT-KLTAV----ITLESVAELGLKPGKEVYAVIKAPW 63 (69)
T ss_pred EECCCeEEEEEEECCCC-EEEEE----ecHHHHhhCCCCCCCEEEEEEECcE
Confidence 44455555555554432 22222 3344456777888988888887653
No 125
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=21.94 E-value=4.6e+02 Score=21.65 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=50.4
Q ss_pred EEEEecccCceEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEecCCC-c---eeEEEeeccccccccccc
Q 036841 65 LRIINAAMDEMLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQNP-N---LYYMASSVYSTVVNLDFI 140 (412)
Q Consensus 65 lRlINa~~~~~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~~~-g---~y~ir~~~~~~~~~~~~~ 140 (412)
|=+-|++...++.+. +..=..+||..|+.+.-+-+.|.|=+..+++|+-+... | +|.++-.+.....
T Consensus 29 LSiRNtd~~~~i~i~----~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~GGsGANFiv~W~a~~~v~----- 99 (125)
T PF11322_consen 29 LSIRNTDPTDPIYIT----SVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTSGGSGANFIVEWSAEKPVN----- 99 (125)
T ss_pred EEEEcCCCCCCEEEE----EEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccCCCCccceEEEEEecCCCCC-----
Confidence 445566665555442 22334588999998888899999999999999987632 2 6766654433322
Q ss_pred CCccEEEEEEE
Q 036841 141 NNTTATAVLQY 151 (412)
Q Consensus 141 ~~~~~~ail~y 151 (412)
.+...|++.-
T Consensus 100 -~PivEaVMig 109 (125)
T PF11322_consen 100 -EPIVEAVMIG 109 (125)
T ss_pred -CCEEEEEEEc
Confidence 3455565554
No 126
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.70 E-value=2.6e+02 Score=26.31 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=51.7
Q ss_pred eEEEeeCCCEEEEEEecCCcCCCCCCceeecCceEEEEeecCCCCCCCCCCCCCCCCCCCceeeEEeCCCcEEEEEEEcC
Q 036841 288 EVKVLDYDSAVEINFQGTNLVAGTSHPIHLHGYSFFVVGFGFGNFDEEKDPLNYNLIDPPLRTIVDVPISGWATVRFRAS 367 (412)
Q Consensus 288 ~~~~~~~g~~v~~~l~n~~~~~~~~Hp~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~np~~rDTv~vp~~~~~~vr~~~~ 367 (412)
+-..+|.|..+++.+... +..|.|.+-. .| +.+|.+ ||-...+.|.++
T Consensus 174 n~lvlP~~~~v~~~ltS~----DViHSf~vP~-------lg------------------vK~Dai---PGr~n~~~~~~~ 221 (262)
T MTH00027 174 NRLILPVDTNVRVLITAA----DVLHSWTVPS-------LA------------------VKMDAV---PGRINETGFLIK 221 (262)
T ss_pred ceEEEeeCcEEEEEEEcC----ccccceeccc-------cc------------------CcccCC---CCceeeEEEEcC
Confidence 457889999999988874 4567655432 22 123332 577778899999
Q ss_pred CceeEEEEeehhHh-HhcCceEEEEEeCC
Q 036841 368 NPGVWFMHCHREEH-LTWGMKTVFIVKNG 395 (412)
Q Consensus 368 npG~w~~HCHi~~H-~~~GM~~~~~V~~~ 395 (412)
.||.+.-.|+-.-= -...|-..+.|.+.
T Consensus 222 ~~G~y~g~CsE~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 222 RPGIFYGQCSEICGANHSFMPIVVESVSL 250 (262)
T ss_pred CcEEEEEEcchhcCcCcCCCeEEEEEECH
Confidence 99999999985522 22567777776543
No 127
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=21.68 E-value=3.7e+02 Score=20.50 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=37.0
Q ss_pred EEecCCEEE--EEEEecccCc-eEEEEEcCccEEEEeeCCCccCceEEeEEEECCCceEEEEEEec-C-CCceeEEE
Q 036841 56 TVDEGKTYL--LRIINAAMDE-MLFFSIANHDLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQAN-Q-NPNLYYMA 127 (412)
Q Consensus 56 ~v~~Gk~yR--lRlINa~~~~-~~~~sidgh~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~-~-~~g~y~ir 127 (412)
.+..|++|. +.|.|.|... .|.++.....-..+ -++| ..-.|+||+..++-|.+. . ..|.|.-.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~-----~v~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~~ 83 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFF-----SVEP---PSGFLAPGESVELEVTFSPTKPLGDYEGS 83 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCE-----EEEC---CCCEECCCCEEEEEEEEEeCCCCceEEEE
Confidence 355677774 9999999753 44444433100000 1122 234599999999999988 3 34655433
No 128
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=21.53 E-value=4.7e+02 Score=21.61 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred eEEEEecCCEEEEEEEecccCceEEEEEcCc--cEEEEeeCCCccCceEEeEEEECCCceEEEEEEecC
Q 036841 53 FTLTVDEGKTYLLRIINAAMDEMLFFSIANH--DLTVVGTDGAYTNPLTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 53 ~~~~v~~Gk~yRlRlINa~~~~~~~~sidgh--~m~VIa~DG~~v~P~~v~~l~l~~GqRydViv~~~~ 119 (412)
....+.+|+-..+||.=..+. +.++|. .+++-...-.-++ ....+.+.+|+.++++++++-
T Consensus 61 ~~~~lpaG~Y~~irl~l~~~~----v~~~g~~~~l~vps~~~~glk--~~~~~~v~~g~~~~~vlDFDl 123 (139)
T PF14321_consen 61 ADAELPAGTYNQIRLVLDDAN----VVINGTTYPLKVPSGQQKGLK--LNGNFTVSAGGSYDLVLDFDL 123 (139)
T ss_pred eccccCCCcEEEEEEEEeCCe----EEECCEEEEEEcCCCCcceeE--EcCCeEEcCCCEEEEEEEEec
Confidence 456778887446777755433 333442 2222221001011 124678889999999999985
No 129
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=20.84 E-value=3.4e+02 Score=22.09 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred EEEEEEEecccCceEEEEEcCc-cEEEEeeCCCccC-c-----eEEeEEEECCCceEEEEEEecC
Q 036841 62 TYLLRIINAAMDEMLFFSIANH-DLTVVGTDGAYTN-P-----LTTSYITISPGQTLDVLLQANQ 119 (412)
Q Consensus 62 ~yRlRlINa~~~~~~~~sidgh-~m~VIa~DG~~v~-P-----~~v~~l~l~~GqRydViv~~~~ 119 (412)
.++|.+-|.|.... +|.|. .+.++..||..+. + .....+.|.||+...+.|....
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 44799999998632 22343 3556688887541 1 1345799999999998888765
No 130
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=20.70 E-value=4.9e+02 Score=21.49 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=29.4
Q ss_pred CCceEEEcCccCCCCCCCCCCceEE---EEecCC----EEEEEEEecccCceEEEEEcC
Q 036841 31 ASDAFTINGQPGDLYPCSSSETFTL---TVDEGK----TYLLRIINAAMDEMLFFSIAN 82 (412)
Q Consensus 31 ~~d~~lING~~g~~~~c~~~~~~~~---~v~~Gk----~yRlRlINa~~~~~~~~sidg 82 (412)
.++.+.++|+.- -.+ ..+||| .+|+++.|--....+..++..
T Consensus 13 kG~~i~~~g~p~----------~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s 61 (129)
T PRK03999 13 EGSYVVIDGEPC----------KIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPV 61 (129)
T ss_pred CCCEEEECCEEE----------EEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecC
Confidence 367888899732 112 246887 789999998887777777653
No 131
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.08 E-value=4.6e+02 Score=21.77 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=38.7
Q ss_pred EEEEEecccCceEEEEEcCccEEEEeeCCCcc-----Cc------eEEeEEEECCCceEEEEEEecCCCc---eeEEE
Q 036841 64 LLRIINAAMDEMLFFSIANHDLTVVGTDGAYT-----NP------LTTSYITISPGQTLDVLLQANQNPN---LYYMA 127 (412)
Q Consensus 64 RlRlINa~~~~~~~~sidgh~m~VIa~DG~~v-----~P------~~v~~l~l~~GqRydViv~~~~~~g---~y~ir 127 (412)
+..|+|.+....-.-.| ++++...+|..+ .| .....-.|.||++..+.+.+..++. +|.++
T Consensus 73 ~g~i~N~~~~~~~~P~l---~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~~a~~~~v~ 147 (149)
T PF11906_consen 73 SGTIRNRADFPQALPAL---ELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPPRAAGYRVE 147 (149)
T ss_pred EEEEEeCCCCcccCceE---EEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCCccceEEEE
Confidence 35778888765433333 667777777655 23 1122556999999999999976432 45554
Done!