BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036845
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
 pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
          Length = 364

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 60  LPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDS 106
           LP  +E    S   E +  +    YG    I F +R++++L KEL+S
Sbjct: 116 LPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES 162


>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
           Hyperthermophilic Archaeon Sulfolobus Solfataricus
 pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
           Hyperthermophilic Archaeon Sulfolobus Solfataricus In
           Complex With Gdp
 pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
          Length = 364

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 60  LPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDS 106
           LP  +E    S   E +  +    YG    I F +R++++L KEL+S
Sbjct: 116 LPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES 162


>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
 pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
          Length = 364

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 60  LPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDS 106
           LP  +E    S   E +  +    YG    I F +R++++L KEL+S
Sbjct: 116 LPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,922,452
Number of Sequences: 62578
Number of extensions: 242778
Number of successful extensions: 526
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 7
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)