Query 036845
Match_columns 192
No_of_seqs 138 out of 323
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 3.5E-50 7.5E-55 308.3 8.8 101 11-111 1-101 (101)
2 COG3416 Uncharacterized protei 81.2 5.7 0.00012 35.4 6.6 63 54-116 14-76 (233)
3 PRK10265 chaperone-modulator p 77.2 5.3 0.00012 30.4 4.6 32 85-116 68-99 (101)
4 PF11333 DUF3135: Protein of u 75.5 8.6 0.00019 29.0 5.3 66 35-104 15-82 (83)
5 PF09006 Surfac_D-trimer: Lung 75.4 6.8 0.00015 27.1 4.3 29 90-118 1-29 (46)
6 PF07106 TBPIP: Tat binding pr 74.4 3.8 8.2E-05 33.2 3.4 78 37-114 20-105 (169)
7 PF13334 DUF4094: Domain of un 73.6 3.2 7E-05 31.9 2.6 23 88-110 73-95 (95)
8 PF09849 DUF2076: Uncharacteri 71.3 10 0.00022 33.7 5.6 58 55-112 15-72 (247)
9 PF05308 Mito_fiss_reg: Mitoch 70.6 6.6 0.00014 34.9 4.3 28 95-122 122-149 (253)
10 PRK04406 hypothetical protein; 65.7 22 0.00047 26.2 5.5 26 89-114 33-58 (75)
11 PRK02793 phi X174 lysis protei 65.1 24 0.00052 25.6 5.5 26 89-114 30-55 (72)
12 PRK00846 hypothetical protein; 64.7 24 0.00051 26.5 5.5 30 88-117 34-63 (77)
13 PF06698 DUF1192: Protein of u 64.7 13 0.00029 26.6 4.0 25 90-114 23-47 (59)
14 PRK02119 hypothetical protein; 63.8 26 0.00056 25.6 5.5 26 89-114 31-56 (73)
15 KOG4552 Vitamin-D-receptor int 63.1 1.1E+02 0.0023 27.8 10.2 47 52-106 59-106 (272)
16 PRK00295 hypothetical protein; 60.7 35 0.00076 24.5 5.7 26 89-114 27-52 (68)
17 COG5509 Uncharacterized small 60.4 17 0.00036 26.8 3.9 24 90-113 27-50 (65)
18 PF12097 DUF3573: Protein of u 59.2 11 0.00024 35.8 3.5 22 89-110 43-64 (383)
19 PF04102 SlyX: SlyX; InterPro 58.6 14 0.0003 26.4 3.3 27 89-115 26-52 (69)
20 PLN02523 galacturonosyltransfe 53.1 42 0.00091 33.5 6.6 53 54-111 145-199 (559)
21 PRK00736 hypothetical protein; 52.8 52 0.0011 23.6 5.5 26 89-114 27-52 (68)
22 cd04766 HTH_HspR Helix-Turn-He 51.4 26 0.00057 25.5 3.9 23 90-112 67-89 (91)
23 PF04728 LPP: Lipoprotein leuc 47.5 38 0.00082 24.2 4.0 22 90-111 12-33 (56)
24 PF12325 TMF_TATA_bd: TATA ele 46.5 42 0.0009 26.8 4.5 29 86-114 14-42 (120)
25 PF06305 DUF1049: Protein of u 45.0 51 0.0011 22.4 4.3 24 90-113 43-66 (68)
26 PF04977 DivIC: Septum formati 44.0 47 0.001 22.8 4.1 22 91-112 27-48 (80)
27 cd01111 HTH_MerD Helix-Turn-He 42.6 75 0.0016 24.2 5.3 29 86-114 78-106 (107)
28 PF13591 MerR_2: MerR HTH fami 42.2 32 0.00069 25.2 3.1 23 86-108 61-83 (84)
29 PF07334 IFP_35_N: Interferon- 41.2 38 0.00083 25.5 3.4 26 89-114 1-26 (76)
30 PRK04325 hypothetical protein; 40.7 1.1E+02 0.0023 22.4 5.6 26 89-114 31-56 (74)
31 PF10883 DUF2681: Protein of u 38.8 59 0.0013 24.9 4.1 27 90-116 32-58 (87)
32 PF14282 FlxA: FlxA-like prote 37.4 55 0.0012 25.1 3.9 25 89-113 52-76 (106)
33 PF06696 Strep_SA_rep: Strepto 37.1 90 0.0019 19.0 3.9 22 93-114 3-24 (25)
34 PF15300 INT_SG_DDX_CT_C: INTS 36.1 40 0.00087 24.5 2.7 27 50-76 23-51 (65)
35 PLN02705 beta-amylase 36.1 67 0.0015 32.8 5.1 15 178-192 62-76 (681)
36 PF04706 Dickkopf_N: Dickkopf 36.0 23 0.0005 24.7 1.4 17 9-25 20-36 (52)
37 PF11853 DUF3373: Protein of u 35.7 38 0.00083 33.2 3.3 31 81-112 18-48 (489)
38 PRK00888 ftsB cell division pr 34.2 77 0.0017 24.5 4.2 20 90-109 29-48 (105)
39 PRK09413 IS2 repressor TnpA; R 34.1 86 0.0019 24.1 4.5 32 90-121 80-111 (121)
40 PF04977 DivIC: Septum formati 34.1 1.1E+02 0.0024 21.0 4.6 24 90-113 19-42 (80)
41 PF04728 LPP: Lipoprotein leuc 33.9 89 0.0019 22.3 4.1 23 90-112 19-41 (56)
42 PRK10803 tol-pal system protei 33.3 62 0.0013 28.4 4.0 24 89-112 55-78 (263)
43 PF12325 TMF_TATA_bd: TATA ele 33.3 83 0.0018 25.1 4.3 27 88-114 30-56 (120)
44 TIGR02209 ftsL_broad cell divi 33.1 75 0.0016 22.4 3.8 24 90-113 33-56 (85)
45 COG4985 ABC-type phosphate tra 33.0 60 0.0013 29.7 3.9 53 56-115 195-248 (289)
46 PF11471 Sugarporin_N: Maltopo 32.4 92 0.002 22.1 4.0 21 93-113 30-50 (60)
47 PF14282 FlxA: FlxA-like prote 32.2 56 0.0012 25.1 3.1 23 87-109 18-40 (106)
48 PF13600 DUF4140: N-terminal d 31.9 90 0.0019 23.0 4.1 28 87-114 69-96 (104)
49 TIGR03021 pilP_fam type IV pil 31.5 2.4E+02 0.0053 22.3 6.7 25 87-111 4-28 (119)
50 PF14071 YlbD_coat: Putative c 31.3 1.5E+02 0.0033 24.1 5.6 32 90-121 79-110 (124)
51 PF06295 DUF1043: Protein of u 30.8 63 0.0014 25.6 3.3 24 90-113 27-50 (128)
52 KOG4797 Transcriptional regula 30.4 1.6E+02 0.0036 24.0 5.6 65 62-129 51-120 (123)
53 PF11336 DUF3138: Protein of u 30.1 63 0.0014 31.9 3.7 27 87-113 24-50 (514)
54 PHA02047 phage lambda Rz1-like 30.1 1.1E+02 0.0024 24.3 4.5 19 96-114 35-53 (101)
55 PF06295 DUF1043: Protein of u 29.9 93 0.002 24.6 4.1 20 97-116 27-46 (128)
56 PLN02742 Probable galacturonos 29.8 1.1E+02 0.0025 30.3 5.5 46 62-111 132-177 (534)
57 PF08227 DASH_Hsk3: DASH compl 29.5 1.1E+02 0.0024 20.9 3.8 24 90-113 4-27 (45)
58 PF04012 PspA_IM30: PspA/IM30 29.4 1.2E+02 0.0026 25.2 5.0 41 66-113 8-48 (221)
59 PF04697 Pinin_SDK_N: pinin/SD 28.1 1.2E+02 0.0026 25.2 4.6 37 89-125 4-40 (134)
60 KOG4196 bZIP transcription fac 28.1 96 0.0021 25.8 4.0 51 62-113 53-106 (135)
61 PF15397 DUF4618: Domain of un 27.9 94 0.002 28.1 4.2 61 51-119 52-115 (258)
62 PRK10963 hypothetical protein; 27.9 1.9E+02 0.0041 24.7 5.9 52 50-110 6-59 (223)
63 PF03242 LEA_3: Late embryogen 27.8 24 0.00051 27.3 0.4 20 72-91 58-77 (93)
64 PF04508 Pox_A_type_inc: Viral 27.7 1E+02 0.0022 18.5 3.0 18 90-107 3-20 (23)
65 PRK09039 hypothetical protein; 27.1 83 0.0018 28.8 3.9 23 89-111 138-160 (343)
66 PF04420 CHD5: CHD5-like prote 27.1 92 0.002 25.5 3.8 41 68-112 49-90 (161)
67 PF08657 DASH_Spc34: DASH comp 26.0 1.9E+02 0.004 25.9 5.8 33 80-112 172-204 (259)
68 TIGR03755 conj_TIGR03755 integ 26.0 2.2E+02 0.0047 27.6 6.5 60 51-112 298-374 (418)
69 PF11471 Sugarporin_N: Maltopo 25.9 1.2E+02 0.0025 21.6 3.6 26 89-114 33-58 (60)
70 PF05465 Halo_GVPC: Halobacter 25.4 1.2E+02 0.0027 19.0 3.3 26 90-115 1-26 (32)
71 PF15483 DUF4641: Domain of un 25.3 84 0.0018 30.6 3.6 31 83-114 414-444 (445)
72 PRK14127 cell division protein 25.2 1.4E+02 0.0031 23.6 4.4 26 89-114 45-70 (109)
73 COG5509 Uncharacterized small 25.2 80 0.0017 23.3 2.7 20 90-109 34-53 (65)
74 PRK00451 glycine dehydrogenase 25.0 59 0.0013 29.4 2.5 35 29-64 2-36 (447)
75 COG2900 SlyX Uncharacterized p 24.9 2.5E+02 0.0055 21.1 5.4 31 89-119 30-60 (72)
76 PF07820 TraC: TraC-like prote 24.9 1.2E+02 0.0026 23.7 3.8 21 90-110 4-24 (92)
77 cd00089 HR1 Protein kinase C-r 24.6 1.8E+02 0.0038 20.5 4.4 28 88-115 42-69 (72)
78 PF06818 Fez1: Fez1; InterPro 24.2 1.3E+02 0.0027 26.5 4.2 26 87-112 9-34 (202)
79 smart00338 BRLZ basic region l 24.1 2E+02 0.0043 19.7 4.5 25 89-113 34-58 (65)
80 PRK11677 hypothetical protein; 23.9 98 0.0021 25.3 3.3 24 89-112 30-53 (134)
81 cd00584 Prefoldin_alpha Prefol 23.8 1.6E+02 0.0034 22.5 4.3 26 89-114 7-32 (129)
82 PF06698 DUF1192: Protein of u 23.6 1.6E+02 0.0034 21.1 3.9 24 89-112 29-52 (59)
83 PHA02562 46 endonuclease subun 23.2 87 0.0019 29.2 3.3 27 28-54 141-167 (562)
84 PF12718 Tropomyosin_1: Tropom 23.2 1.4E+02 0.003 24.1 4.1 25 89-113 36-60 (143)
85 PRK14623 hypothetical protein; 22.8 1.3E+02 0.0029 23.5 3.8 24 90-113 3-26 (106)
86 PF04340 DUF484: Protein of un 22.7 1.6E+02 0.0035 24.8 4.5 55 50-113 9-65 (225)
87 PRK14625 hypothetical protein; 22.6 1.3E+02 0.0029 23.6 3.8 24 90-113 4-27 (109)
88 KOG4403 Cell surface glycoprot 22.4 1.2E+02 0.0026 30.2 4.1 44 69-115 286-329 (575)
89 PRK11677 hypothetical protein; 22.0 1.9E+02 0.0042 23.6 4.7 21 96-116 30-50 (134)
90 COG3524 KpsE Capsule polysacch 21.9 1.1E+02 0.0025 29.0 3.7 58 54-111 167-246 (372)
91 PRK14626 hypothetical protein; 21.6 1.6E+02 0.0034 23.1 4.0 26 88-113 5-30 (110)
92 PF12808 Mto2_bdg: Micro-tubul 21.3 3E+02 0.0065 19.3 5.4 43 65-108 7-49 (52)
93 TIGR00293 prefoldin, archaeal 21.2 2.2E+02 0.0047 21.7 4.6 27 89-115 7-33 (126)
94 PF06717 DUF1202: Protein of u 21.0 1.3E+02 0.0028 28.1 3.8 34 89-122 153-186 (308)
95 TIGR01010 BexC_CtrB_KpsE polys 20.4 1.6E+02 0.0034 26.3 4.2 55 65-119 146-201 (362)
96 PRK01203 prefoldin subunit alp 20.4 1.8E+02 0.0038 23.8 4.1 26 89-114 8-33 (130)
97 PF14197 Cep57_CLD_2: Centroso 20.4 2.2E+02 0.0048 20.6 4.3 30 85-114 37-66 (69)
98 PRK14622 hypothetical protein; 20.2 1.6E+02 0.0035 22.8 3.7 24 90-113 3-26 (103)
99 PF00172 Zn_clus: Fungal Zn(2) 20.2 62 0.0013 20.4 1.2 15 10-24 1-15 (40)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=3.5e-50 Score=308.27 Aligned_cols=101 Identities=63% Similarity=1.169 Sum_probs=99.7
Q ss_pred CChhhhhhhcCCCCCCcCCCCCCCCCchhhhhHHhhhccchHHHHHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHH
Q 036845 11 PCAACKFLRRKCVPGCIFAPYFPPEEPQKFVNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAI 90 (192)
Q Consensus 11 ~CAACK~lRRrC~~~CilAPYFPa~~pq~Fa~vhkvFG~sNV~kmL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I 90 (192)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++++++|+++|+||+|||++|++||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036845 91 SFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 91 ~~Lq~qI~~lq~EL~~a~aeL 111 (192)
+.||+||+++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.21 E-value=5.7 Score=35.39 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 54 KLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 54 kmL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
.-|+......|+..++.||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+....
T Consensus 14 ~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 14 HRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666777899999999999999999999999999999999999999999999988876544
No 3
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=77.18 E-value=5.3 Score=30.36 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 85 GCVGAISFLQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 85 GCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
-.+++|..|-.||+.|++|+...+++|.+|..
T Consensus 68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 68 PGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999998853
No 4
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=75.53 E-value=8.6 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCchhhhhHHhhhccchHHHHHhhcCchhH--HHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHH
Q 036845 35 EEPQKFVNVHKIFGASNMTKLLNDLLPHQR--EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKEL 104 (192)
Q Consensus 35 ~~pq~Fa~vhkvFG~sNV~kmL~~l~~~qR--~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL 104 (192)
++|+.|....+ .-+-.++...+++.+ -.++.+-|=---.|.++|+.-|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888887543 456668888888764 4567776666778899999999999999999998887665
No 5
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=75.38 E-value=6.8 Score=27.10 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYACNE 118 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~ 118 (192)
|..|.+|+..|+.+|..+++.+..|.-.+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998886543
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.42 E-value=3.8 Score=33.15 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=52.7
Q ss_pred chhhhhHHhhhccchHHHHHhhcCchhHH---HHHHHHHHhhhhcccCCCCCc-----HHHHHHHHHHHHHHHHHHHHHH
Q 036845 37 PQKFVNVHKIFGASNMTKLLNDLLPHQRE---DAVNSLAYEAEARVRDPVYGC-----VGAISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 37 pq~Fa~vhkvFG~sNV~kmL~~l~~~qR~---da~~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~qI~~lq~EL~~a~ 108 (192)
..-|.|+|.-||-..|.|.|..|-.+.+- ..=++.||=++--.-+-+..- =.-|..|+.++..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999765432 233445665554433312221 2347777788888888888888
Q ss_pred HHHHHH
Q 036845 109 ADLIRY 114 (192)
Q Consensus 109 aeL~~~ 114 (192)
++|...
T Consensus 100 ~eL~~L 105 (169)
T PF07106_consen 100 AELASL 105 (169)
T ss_pred HHHHHH
Confidence 887754
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=73.64 E-value=3.2 Score=31.86 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
-.|..|.+.|..||+||++|+++
T Consensus 73 ~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 73 EAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45778888888888888888763
No 8
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=71.27 E-value=10 Score=33.74 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=53.2
Q ss_pred HHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 55 LLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 55 mL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
-|+.+....|+.-++.||-|+-.|.-|-+|=-+-.|..++.-|++++++|+.++++|.
T Consensus 15 RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 15 RLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777787899999999999999999999999999999999999999999999999984
No 9
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=70.65 E-value=6.6 Score=34.94 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036845 95 RQVHRLQKELDSANADLIRYACNEIPPG 122 (192)
Q Consensus 95 ~qI~~lq~EL~~a~aeL~~~~~~~~~~~ 122 (192)
++|..||.||..+++||+..+..+-.++
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~~ 149 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQSN 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5778899999999999998876654433
No 10
>PRK04406 hypothetical protein; Provisional
Probab=65.68 E-value=22 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|...|++|..|+.+|..+..+|...
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777887877777777543
No 11
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.12 E-value=24 Score=25.65 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|...|++|..|+.+|..+..+|...
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667778888888888888877654
No 12
>PRK00846 hypothetical protein; Provisional
Probab=64.74 E-value=24 Score=26.50 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRYACN 117 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~ 117 (192)
.+|...+++|..++.+|..+..+|......
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356667778888888888888877655433
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=64.68 E-value=13 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
|-.|+..|..|++|++.+++++.+-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999988888653
No 14
>PRK02119 hypothetical protein; Provisional
Probab=63.76 E-value=26 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|..-|++|..|+.+|..+..+|...
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777777643
No 15
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=63.14 E-value=1.1e+02 Score=27.77 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHhhcCc-hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036845 52 MTKLLNDLLP-HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDS 106 (192)
Q Consensus 52 V~kmL~~l~~-~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~ 106 (192)
+.+||+-+++ .+|+.+|+.|--+-+.|.+ .|.+||.++...+.-|..
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHH
Confidence 3445554443 5678999998555555543 599999999887765543
No 16
>PRK00295 hypothetical protein; Provisional
Probab=60.67 E-value=35 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|...|++|..|+.+|..+..+|...
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667778888888888887777654
No 17
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=60.37 E-value=17 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
|-.|.++|..||+|++.+++|+.+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888888888888764
No 18
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=59.20 E-value=11 Score=35.78 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
.|.+||+||++||+||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999998876
No 19
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.60 E-value=14 Score=26.42 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
+|...+++|..|+.+|..+..+|....
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566777777777777777776543
No 20
>PLN02523 galacturonosyltransferase
Probab=53.13 E-value=42 Score=33.46 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=42.6
Q ss_pred HHHhhcCc--hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 54 KLLNDLLP--HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 54 kmL~~l~~--~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
..|++|++ .+|-.+|+.++++|.. +|-|..+|.+|+..|..+++++..++.+=
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~ 199 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNG 199 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566765 4567899999999993 44467899999999999999999998753
No 21
>PRK00736 hypothetical protein; Provisional
Probab=52.80 E-value=52 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|..-|++|..|+.+|..+..+|...
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777654
No 22
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=51.42 E-value=26 Score=25.46 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
|..|..|++.+++||+..+++|.
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 67 ILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33499999999999999998875
No 23
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.46 E-value=38 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
|+.|+.+|.+|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555444
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.49 E-value=42 Score=26.84 Aligned_cols=29 Identities=38% Similarity=0.483 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 86 CVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 86 CvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+.+|..|+.+|.+++.|+..++.+|.+.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.03 E-value=51 Score=22.40 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
...+++++.++++|++.++.|+..
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366788888899999988888864
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.99 E-value=47 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 91 SFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 91 ~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
..|+.+++.++++.+..++++.
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 27
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=42.65 E-value=75 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 86 CVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 86 CvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
|...+..++.+|+..+++|+.++++|...
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788889999999999999999988754
No 28
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=42.20 E-value=32 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 036845 86 CVGAISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 86 CvG~I~~Lq~qI~~lq~EL~~a~ 108 (192)
.+++|.+|-.+|+.|++||...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998765
No 29
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.18 E-value=38 Score=25.51 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|..|+.+..+|+.||..+.++|..-
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888887654
No 30
>PRK04325 hypothetical protein; Provisional
Probab=40.71 E-value=1.1e+02 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+|...|++|..|+.+|..+..+|...
T Consensus 31 vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 31 TVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777778888877777777543
No 31
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.78 E-value=59 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
+..|+.+.++++.|.+.+++++..|.-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888876643
No 32
>PF14282 FlxA: FlxA-like protein
Probab=37.36 E-value=55 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.+..|+.||..|+++|..++.+...
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888877777777654
No 33
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=37.09 E-value=90 Score=19.02 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 93 LQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 93 Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.|..+.+-|+||+.++.+++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5667888888888888887653
No 34
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=36.07 E-value=40 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.6
Q ss_pred chHHHHHhhc--CchhHHHHHHHHHHhhh
Q 036845 50 SNMTKLLNDL--LPHQREDAVNSLAYEAE 76 (192)
Q Consensus 50 sNV~kmL~~l--~~~qR~da~~SLvYEA~ 76 (192)
+.|.++|+.+ +.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899988 68999999999999985
No 35
>PLN02705 beta-amylase
Probab=36.06 E-value=67 Score=32.78 Aligned_cols=15 Identities=67% Similarity=1.551 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCC
Q 036845 178 SGDINHGGGGGGGGR 192 (192)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (192)
++++.+||||||+|+
T Consensus 62 ~~~~~~~~~~~~~~~ 76 (681)
T PLN02705 62 NGNISSGGGGGGGGK 76 (681)
T ss_pred CccccCCCCCCCCCC
Confidence 566766666666653
No 36
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=35.97 E-value=23 Score=24.65 Aligned_cols=17 Identities=29% Similarity=0.835 Sum_probs=15.1
Q ss_pred CCCChhhhhhhcCCCCC
Q 036845 9 NSPCAACKFLRRKCVPG 25 (192)
Q Consensus 9 ~~~CAACK~lRRrC~~~ 25 (192)
...|..||-+|++|..|
T Consensus 20 ~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 20 ESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CccChhhccCCCCCCCC
Confidence 48899999999999965
No 37
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.66 E-value=38 Score=33.16 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=19.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 81 DPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 81 DPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.|.....--+..+| ||++|++||+.+++|+.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 33443444455555 88888888888888743
No 38
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.17 E-value=77 Score=24.46 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANA 109 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~a 109 (192)
+..+++|++.+++|++.+++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444
No 39
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.14 E-value=86 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYACNEIPP 121 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~~~ 121 (192)
|..|+.++.+|+.|++.++..+.-+.+.....
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~~~~~~~~ 111 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYGRAKKWIA 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 56677777777777777776666555554443
No 40
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.08 E-value=1.1e+02 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..+++++..++.+++.++++...
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~ 42 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEE 42 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777776666665544
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.89 E-value=89 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
|.+|+..|..++.++..|+.|-+
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 42
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.29 E-value=62 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.+..|++||+.+|.|++.++-+|.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 557788888888888887776553
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.26 E-value=83 Score=25.15 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
|-|..|++++..++++-+.+.+||.+.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999988764
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.07 E-value=75 Score=22.44 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..+++++..+++|-+.++.|+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665566555544
No 45
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.99 E-value=60 Score=29.74 Aligned_cols=53 Identities=32% Similarity=0.312 Sum_probs=36.4
Q ss_pred HhhcCc-hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 56 LNDLLP-HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 56 L~~l~~-~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
|+.|-- +.|..+-.-|--|+..+. +..-+.||.+++.|+.||+.+++|+.++-
T Consensus 195 lErLRL~krrlQl~g~Ld~~~q~~~-------~ae~seLq~r~~~l~~~L~~L~~e~~r~~ 248 (289)
T COG4985 195 LERLRLEKRRLQLNGQLDDEFQQHY-------VAEKSELQKRLAQLQTELDALRAELERQF 248 (289)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhce
Confidence 444432 233444444444555553 45678999999999999999999999863
No 46
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.38 E-value=92 Score=22.14 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036845 93 LQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 93 Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
++++|+.|+++|..++.++..
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555543
No 47
>PF14282 FlxA: FlxA-like protein
Probab=32.17 E-value=56 Score=25.11 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANA 109 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~a 109 (192)
-..|..|+.||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666666655544
No 48
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.92 E-value=90 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
--.+..|+.+|+.++.+++.+++++...
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377888888888888888888877643
No 49
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=31.53 E-value=2.4e+02 Score=22.33 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
++-+..||.+...++++++.++++-
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~ 28 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQN 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999988887776543
No 50
>PF14071 YlbD_coat: Putative coat protein
Probab=31.34 E-value=1.5e+02 Score=24.14 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYACNEIPP 121 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~~~ 121 (192)
+..||.+|..++..|..++.=|..+.......
T Consensus 79 ~nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~ 110 (124)
T PF14071_consen 79 VNQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQ 110 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 36789999999999999999887775555443
No 51
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.79 E-value=63 Score=25.55 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
...|+++|++.+.||+.-+.++..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666644
No 52
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.45 E-value=1.6e+02 Score=24.00 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCCCCCCCCC
Q 036845 62 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANA-----DLIRYACNEIPPGSQLPAPA 129 (192)
Q Consensus 62 ~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~a-----eL~~~~~~~~~~~~~~~~~~ 129 (192)
+|--|++++-++=| +|.-|-+--+-|..|..++..|++|-..++. +|+.+.....++.-+.+|+.
T Consensus 51 eQAMDLVKtHLmfA---VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~~q~~~~~p~~ 120 (123)
T KOG4797|consen 51 EQAMDLVKTHLMFA---VREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLSPQLCPESPQQ 120 (123)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcccccCCCCCCC
Confidence 45567777765544 3444556667778888888888777666553 45555444444444444433
No 53
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.11 E-value=63 Score=31.86 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.-.|..||.||+.||.|+..++++|+.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999974
No 54
>PHA02047 phage lambda Rz1-like protein
Probab=30.08 E-value=1.1e+02 Score=24.29 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036845 96 QVHRLQKELDSANADLIRY 114 (192)
Q Consensus 96 qI~~lq~EL~~a~aeL~~~ 114 (192)
..+++.++|+.++.+|.+|
T Consensus 35 ~a~~la~qLE~a~~r~~~~ 53 (101)
T PHA02047 35 EAKRQTARLEALEVRYATL 53 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 55
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.89 E-value=93 Score=24.61 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036845 97 VHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 97 I~~lq~EL~~a~aeL~~~~~ 116 (192)
...|+.||+.++.+|..|..
T Consensus 27 q~~l~~eL~~~k~el~~yk~ 46 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQ 46 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777776643
No 56
>PLN02742 Probable galacturonosyltransferase
Probab=29.82 E-value=1.1e+02 Score=30.33 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 62 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 62 ~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
+++-..|+.++++|..-. |.|--++.+|+..|..+++|+..++.+=
T Consensus 132 ~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~ 177 (534)
T PLN02742 132 EPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQS 177 (534)
T ss_pred HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888886544 5599999999999999999999888753
No 57
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=29.47 E-value=1.1e+02 Score=20.87 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
++.|..|+++|++-|+...+.|..
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 577888888888888888877754
No 58
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.40 E-value=1.2e+02 Score=25.16 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 66 DAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 66 da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.++++-+-++--++.||. ..|.+.|..++.+|..++..++.
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665 45556666666666666665554
No 59
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=28.12 E-value=1.2e+02 Score=25.18 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYACNEIPPGSQL 125 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~~~~~~~ 125 (192)
.|..||.||+.+++.|..+-..|.+..+.+.....|.
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 5788999999999999999999999988885444333
No 60
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.12 E-value=96 Score=25.82 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 62 HQREDAVNSLAYEAEARVRDPVYGCV---GAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 62 ~qR~da~~SLvYEA~aR~rDPVyGCv---G~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.||..+++-==|-+.+|++- |.==. --=..|++||+.|..|+..++-|+-.
T Consensus 53 KQrRRTLKNRGYA~sCR~KR-v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKR-VQQKHELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888752 00000 00145666777777666666666543
No 61
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.94 E-value=94 Score=28.11 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=38.7
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCC
Q 036845 51 NMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLI---RYACNEI 119 (192)
Q Consensus 51 NV~kmL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~---~~~~~~~ 119 (192)
+++.+|+.....+.. .+++=+-|.+-+.. -.++.|++|+..|++.|..++.+|. +|...+.
T Consensus 52 ~~i~~le~~~~~~l~-~ak~eLqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EY 115 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQ-QAKAELQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEY 115 (258)
T ss_pred HHHHHHHccChHHHH-HHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455555554443333 33444444444432 3688999999999999999999875 4544444
No 62
>PRK10963 hypothetical protein; Provisional
Probab=27.89 E-value=1.9e+02 Score=24.70 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=30.6
Q ss_pred chHHHHHhhcCc--hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 50 SNMTKLLNDLLP--HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 50 sNV~kmL~~l~~--~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
..|...|++=|. .+.++.+. ..++-.|..|. |+..++|++.+++++...+.+
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~------~L~lph~~~ga---VSL~ErQ~~~LR~r~~~Le~~ 59 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVE------QMRVPHPVRGT---VSLVEWQMARQRNHIHVLEEE 59 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHH------hccCCCCCCCe---ecHHHHHHHHHHHHHHHHHHH
Confidence 356667777664 56677776 44677777764 444455555555544444443
No 63
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=27.75 E-value=24 Score=27.25 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=15.9
Q ss_pred HHhhhhcccCCCCCcHHHHH
Q 036845 72 AYEAEARVRDPVYGCVGAIS 91 (192)
Q Consensus 72 vYEA~aR~rDPVyGCvG~I~ 91 (192)
-.|-..|.+|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 55667899999999986544
No 64
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.67 E-value=1e+02 Score=18.53 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSA 107 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a 107 (192)
|..|+.+|..|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888888754
No 65
>PRK09039 hypothetical protein; Validated
Probab=27.15 E-value=83 Score=28.80 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
.|..|++||+.|+.+|+.++++|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444443
No 66
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.15 E-value=92 Score=25.47 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=29.0
Q ss_pred HHHHHHhhhh-cccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 68 VNSLAYEAEA-RVRDPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 68 ~~SLvYEA~a-R~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
...|.-|.++ -.+| =+.--.+|+++++.+++||+..++++.
T Consensus 49 i~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 49 ILQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445433 4444 566777899999999999999998875
No 67
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.04 E-value=1.9e+02 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 80 RDPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 80 rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.-|+.|.-.-|..|.++.+.+..+++..+++++
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~Va 204 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVA 204 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999988888888887777777665
No 68
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=26.02 E-value=2.2e+02 Score=27.64 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHh-hhhcc----------------cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 51 NMTKLLNDLLPHQREDAVNSLAYE-AEARV----------------RDPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 51 NV~kmL~~l~~~qR~da~~SLvYE-A~aR~----------------rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.|+.-|++.| ++..+++-|..| |-+++ .=-|+.---....++++|+.|..||+.++.|+.
T Consensus 298 gVIeALr~~P--dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~~ 374 (418)
T TIGR03755 298 GVIEALREDP--DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTELE 374 (418)
T ss_pred HHHHHHHhCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777 555566666666 43333 224666666677888888888888888888875
No 69
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.86 E-value=1.2e+02 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+-.|+++|+..+.++..+++++..|
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999988754
No 70
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=25.42 E-value=1.2e+02 Score=19.05 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
|+.|.-.|..++++...++.+...|.
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~aY~ 26 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFEAYA 26 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999999999888875
No 71
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=25.34 E-value=84 Score=30.64 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 83 VYGCVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 83 VyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+-||---|. ||++|++|++||...+.-...|
T Consensus 414 ~qGCpRC~~-LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCLV-LQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 346665554 8999999999999988755544
No 72
>PRK14127 cell division protein GpsB; Provisional
Probab=25.23 E-value=1.4e+02 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+..|+.++..|+.+|+..++++..+
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566666666666666666666544
No 73
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.19 E-value=80 Score=23.28 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANA 109 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~a 109 (192)
|-.||.+|+++++||..-.+
T Consensus 34 IalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 34 IALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999986543
No 74
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=24.97 E-value=59 Score=29.41 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=27.9
Q ss_pred CCCCCCCCchhhhhHHhhhccchHHHHHhhcCchhH
Q 036845 29 APYFPPEEPQKFVNVHKIFGASNMTKLLNDLLPHQR 64 (192)
Q Consensus 29 APYFPa~~pq~Fa~vhkvFG~sNV~kmL~~l~~~qR 64 (192)
-||.|.. ++.-..+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899976 7788889999999999888777775544
No 75
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.94 E-value=2.5e+02 Score=21.05 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYACNEI 119 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~ 119 (192)
+|-..+.-|.+++.+|+.+-+++.......+
T Consensus 30 ~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 30 ALAEQQLVIDKLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444455556666666666666654433333
No 76
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=24.88 E-value=1.2e+02 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~ae 110 (192)
+++|..||..||++|..+..+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888877654
No 77
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.62 E-value=1.8e+02 Score=20.46 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
|.+...+.++......|+.++.+|.+|.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999999999988875
No 78
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.24 E-value=1.3e+02 Score=26.45 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.|.|+.|++|+...|+|++.=-.+|.
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv 34 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIV 34 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 48899999999999888776555554
No 79
>smart00338 BRLZ basic region leucin zipper.
Probab=24.06 E-value=2e+02 Score=19.67 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
-|..|+.+...|+.+++.+..++..
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 80
>PRK11677 hypothetical protein; Provisional
Probab=23.86 E-value=98 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
....|+++|++.+.||+.-+.++.
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777766666654
No 81
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.82 E-value=1.6e+02 Score=22.52 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+..|+.+++.+++++..++..+..|
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655554
No 82
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.63 E-value=1.6e+02 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.|..|+.+|.+++++++.-++...
T Consensus 29 RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 29 RIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888887776543
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.19 E-value=87 Score=29.17 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=14.6
Q ss_pred CCCCCCCCCchhhhhHHhhhccchHHH
Q 036845 28 FAPYFPPEEPQKFVNVHKIFGASNMTK 54 (192)
Q Consensus 28 lAPYFPa~~pq~Fa~vhkvFG~sNV~k 54 (192)
|.|.++....++-..+.++||....-+
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~~~ 167 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVLSE 167 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHHHH
Confidence 444445444455555667777654433
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.17 E-value=1.4e+02 Score=24.13 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
-|..|+.++..|+.+|+.+..+|..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888877754
No 85
>PRK14623 hypothetical protein; Provisional
Probab=22.81 E-value=1.3e+02 Score=23.55 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..|.+|.+++|+++..++++|..
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~ 26 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDT 26 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999999999999974
No 86
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=22.70 E-value=1.6e+02 Score=24.75 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=19.0
Q ss_pred chHHHHHhhcCc--hhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 50 SNMTKLLNDLLP--HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 50 sNV~kmL~~l~~--~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
..|...|++=|. .+.++++..|- +..|.. |.|+..++|++.++++....+.+|..
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~~---~avSL~erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELR------LPHPSG---GAVSLVERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcC------CCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555453 45666666553 455543 58888888888888877777776643
No 87
>PRK14625 hypothetical protein; Provisional
Probab=22.63 E-value=1.3e+02 Score=23.64 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..+.+|.+.+|+++..++++|..
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~ 27 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAE 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999999999999974
No 88
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.43 E-value=1.2e+02 Score=30.18 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 69 NSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 69 ~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
++.+.||+ |.+.=--|..-.-+. ++|++|..+|..|..||....
T Consensus 286 erkl~ea~-rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~nS 329 (575)
T KOG4403|consen 286 ERKLDEAP-RLSELREGVENETSR--KELEQLRVALEKAEKELEANS 329 (575)
T ss_pred HHHHhhhh-hhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 34455553 444444565544443 689999999999999987543
No 89
>PRK11677 hypothetical protein; Provisional
Probab=21.98 E-value=1.9e+02 Score=23.59 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 036845 96 QVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 96 qI~~lq~EL~~a~aeL~~~~~ 116 (192)
+...|+.||+.++.+|..|..
T Consensus 30 ~q~~le~eLe~~k~ele~Ykq 50 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQ 50 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666643
No 90
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=21.90 E-value=1.1e+02 Score=28.98 Aligned_cols=58 Identities=31% Similarity=0.423 Sum_probs=36.4
Q ss_pred HHHhhcCchhHHHHH---HHHHHhhhhcc----------------cCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 54 KLLNDLLPHQREDAV---NSLAYEAEARV----------------RDPVYGC---VGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 54 kmL~~l~~~qR~da~---~SLvYEA~aR~----------------rDPVyGC---vG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
++++.|...-|.|.| +--|-+|+.|. -||--++ +++|+.||.++..+|++|+.+++..
T Consensus 167 ~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m 246 (372)
T COG3524 167 KLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666665565543 33344444443 3565554 7888888888888888888777643
No 91
>PRK14626 hypothetical protein; Provisional
Probab=21.63 E-value=1.6e+02 Score=23.13 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
|-+..+.+|.+++|+++..++++|..
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~ 30 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKK 30 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888889999999999999974
No 92
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.28 E-value=3e+02 Score=19.29 Aligned_cols=43 Identities=28% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036845 65 EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 65 ~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~ 108 (192)
.+...-|.-|=++|..|+ .|+---|..|..+...|+++|...+
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777778888887 4666677777777777777776654
No 93
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.23 E-value=2.2e+02 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
.+..|+++++.+++++..++..+..|.
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELE 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776666553
No 94
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=21.05 E-value=1.3e+02 Score=28.09 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYACNEIPPG 122 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~~~~ 122 (192)
.|..|+.||..|+.++..++.++-+|-+.+....
T Consensus 153 ~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk 186 (308)
T PF06717_consen 153 KIPGLNKQISALDKQIVAINKKIDRYWGKDANGK 186 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 4778999999999999999999999988877554
No 95
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.43 E-value=1.6e+02 Score=26.34 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhcccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036845 65 EDAVNSLAYEAEARVRDP-VYGCVGAISFLQRQVHRLQKELDSANADLIRYACNEI 119 (192)
Q Consensus 65 ~da~~SLvYEA~aR~rDP-VyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~~~ 119 (192)
..++++++-+++..+.+= .--.-..+..|++|+..++.+|+.++.+|..|.....
T Consensus 146 ~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 201 (362)
T TIGR01010 146 QKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK 201 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356666644333332220 0002356678999999999999999999999976554
No 96
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.41 E-value=1.8e+02 Score=23.79 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
-+..|++|++.+++||..++..+.+|
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777776655554
No 97
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.35 E-value=2.2e+02 Score=20.59 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 85 GCVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 85 GCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+.+.-+......+..|++|++..+.+|..+
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556677778888888888887654
No 98
>PRK14622 hypothetical protein; Provisional
Probab=20.22 E-value=1.6e+02 Score=22.75 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..|.+|.+++|+++..++++|..
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~ 26 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAE 26 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999999974
No 99
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=20.17 E-value=62 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=10.3
Q ss_pred CCChhhhhhhcCCCC
Q 036845 10 SPCAACKFLRRKCVP 24 (192)
Q Consensus 10 ~~CAACK~lRRrC~~ 24 (192)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 378899999999986
Done!