Query 036845
Match_columns 192
No_of_seqs 138 out of 323
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 85.6 1.1 3.8E-05 27.8 3.8 27 88-114 2-28 (33)
2 2er8_A Regulatory protein Leu3 76.8 4.9 0.00017 26.7 5.0 17 9-25 3-19 (72)
3 1zme_C Proline utilization tra 58.7 9.1 0.00031 25.0 3.3 25 88-112 44-68 (70)
4 3ra3_B P2F; coiled coil domain 56.1 14 0.00047 22.1 3.3 24 90-113 2-25 (28)
5 3r4h_A Coiled coil helix CC-TE 54.2 19 0.00064 22.4 3.8 28 88-115 2-29 (34)
6 2i9o_A MHB8A peptide; beta-hai 52.6 8.9 0.0003 24.2 2.2 9 183-191 12-20 (37)
7 1am9_A Srebp-1A, protein (ster 51.0 21 0.00071 25.2 4.3 27 87-113 49-75 (82)
8 2zvf_A Alanyl-tRNA synthetase; 50.4 49 0.0017 25.1 6.7 48 70-117 14-61 (171)
9 2yy0_A C-MYC-binding protein; 48.9 16 0.00055 24.4 3.2 23 90-112 28-50 (53)
10 1nkp_B MAX protein, MYC proto- 45.2 33 0.0011 23.8 4.6 27 87-113 46-72 (83)
11 1hlo_A Protein (transcription 44.7 21 0.00071 24.8 3.4 24 87-110 56-79 (80)
12 1uuj_A Platelet-activating fac 44.6 9.3 0.00032 28.3 1.6 23 90-112 60-82 (88)
13 3nmd_A CGMP dependent protein 43.2 35 0.0012 24.5 4.4 29 88-116 40-68 (72)
14 2i7u_A Four-alpha-helix bundle 42.0 6.3 0.00022 27.3 0.4 8 184-191 28-35 (62)
15 1ic2_A Tropomyosin alpha chain 39.1 36 0.0012 23.8 4.0 47 63-113 20-66 (81)
16 2xdj_A Uncharacterized protein 38.7 41 0.0014 24.3 4.3 23 89-111 21-43 (83)
17 4e61_A Protein BIM1; EB1-like 37.0 50 0.0017 25.2 4.7 27 85-111 1-27 (106)
18 1rtm_1 Mannose-binding protein 36.9 34 0.0012 24.8 3.7 22 89-110 5-26 (149)
19 3u1c_A Tropomyosin alpha-1 cha 36.5 39 0.0013 24.7 4.0 27 87-113 43-69 (101)
20 3efg_A Protein SLYX homolog; x 35.6 25 0.00085 25.0 2.7 23 90-112 37-59 (78)
21 3trt_A Vimentin; cytoskeleton, 34.9 35 0.0012 23.2 3.3 20 89-108 57-76 (77)
22 1jcd_A Major outer membrane li 34.5 56 0.0019 21.9 4.1 14 93-106 16-29 (52)
23 3pbf_A Pulmonary surfactant-as 34.2 30 0.001 24.9 3.0 23 89-111 3-25 (148)
24 1gk6_A Vimentin; intermediate 34.2 53 0.0018 21.9 4.0 22 92-113 4-25 (59)
25 1zxa_A CGMP-dependent protein 33.6 63 0.0021 22.8 4.4 29 89-117 26-54 (67)
26 1x8y_A Lamin A/C; structural p 33.1 59 0.002 23.1 4.4 26 89-114 29-54 (86)
27 1gk4_A Vimentin; intermediate 32.1 63 0.0022 22.7 4.4 24 90-113 28-51 (84)
28 2l5g_B Putative uncharacterize 30.5 74 0.0025 20.8 4.0 24 92-115 6-29 (42)
29 3azd_A Short alpha-tropomyosin 29.8 21 0.00071 22.2 1.3 25 89-113 5-29 (37)
30 2xv5_A Lamin-A/C; structural p 28.5 81 0.0028 22.2 4.4 8 109-116 47-54 (74)
31 1dh3_A Transcription factor CR 28.5 93 0.0032 20.5 4.4 26 89-114 23-48 (55)
32 1buu_A Protein (mannose-bindin 28.4 43 0.0015 25.1 3.1 22 88-109 23-44 (168)
33 1jcd_A Major outer membrane li 28.0 78 0.0027 21.2 4.0 23 90-112 20-42 (52)
34 3myf_A Sensor protein; HPT, hi 27.7 1.8E+02 0.0061 21.2 6.5 62 40-109 53-114 (119)
35 2z5i_A TM, general control pro 27.6 68 0.0023 21.1 3.6 23 89-111 13-35 (52)
36 2dgc_A Protein (GCN4); basic d 27.1 1.1E+02 0.0039 20.6 4.8 27 88-114 30-56 (63)
37 2wg5_A General control protein 27.0 71 0.0024 23.6 4.0 27 90-116 9-35 (109)
38 3viq_B Mating-type switching p 25.8 42 0.0014 24.7 2.5 22 92-113 5-26 (85)
39 3twe_A Alpha4H; unknown functi 25.5 88 0.003 18.4 3.4 22 91-112 4-25 (27)
40 3i00_A HIP-I, huntingtin-inter 25.4 69 0.0024 24.5 3.8 31 67-108 30-60 (120)
41 2wt7_B Transcription factor MA 24.7 94 0.0032 22.9 4.3 45 63-112 28-72 (90)
42 3kqg_A Langerin, C-type lectin 24.5 1.1E+02 0.0037 22.7 4.7 23 89-111 17-39 (182)
43 3i00_A HIP-I, huntingtin-inter 24.3 1E+02 0.0034 23.6 4.5 19 90-108 17-35 (120)
44 3tnu_B Keratin, type II cytosk 24.3 95 0.0032 23.2 4.4 40 67-113 61-100 (129)
45 1rtm_1 Mannose-binding protein 24.1 79 0.0027 22.9 3.8 24 93-116 2-25 (149)
46 3iqt_A Signal transduction his 23.3 1.4E+02 0.0049 22.0 5.2 60 41-115 63-122 (123)
47 3mov_A Lamin-B1; LMNB1, B-type 23.3 1.1E+02 0.0037 22.4 4.4 23 90-112 39-61 (95)
48 2qdq_A Talin-1; dimerisation d 23.3 1.2E+02 0.0041 20.4 4.2 22 94-115 14-35 (50)
49 3tnu_A Keratin, type I cytoske 23.0 1E+02 0.0035 23.1 4.4 41 66-113 62-102 (131)
50 3rrk_A V-type ATPase 116 kDa s 23.0 94 0.0032 26.2 4.5 27 88-114 226-252 (357)
51 2pbi_A Regulator of G-protein 22.3 48 0.0016 30.1 2.7 69 37-105 143-236 (424)
52 2k48_A Nucleoprotein; viral pr 22.1 1.1E+02 0.0038 23.4 4.3 26 87-112 34-59 (107)
53 3u59_A Tropomyosin beta chain; 21.9 1E+02 0.0035 22.2 4.0 26 88-113 44-69 (101)
54 3bbp_D GRIP and coiled-coil do 21.8 1.1E+02 0.0036 22.0 3.9 55 42-107 7-62 (71)
55 3mud_A DNA repair protein XRCC 21.7 89 0.003 25.7 4.0 40 61-111 119-158 (175)
56 3swy_A Cyclic nucleotide-gated 21.5 1.3E+02 0.0046 19.6 4.1 24 89-112 13-36 (46)
57 1buu_A Protein (mannose-bindin 20.9 96 0.0033 23.1 3.8 29 87-115 15-43 (168)
58 1t2k_D Cyclic-AMP-dependent tr 20.7 1.1E+02 0.0037 20.1 3.6 19 93-111 34-52 (61)
59 1ybx_A Conserved hypothetical 20.3 81 0.0028 24.9 3.4 26 88-113 41-66 (143)
60 1wlx_A Alpha-actinin 4; three- 20.1 3.1E+02 0.01 21.2 6.9 53 62-114 18-71 (129)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=85.60 E-value=1.1 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
|.|..|+++|..|+.|+++++-||+..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998764
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=76.83 E-value=4.9 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=13.2
Q ss_pred CCCChhhhhhhcCCCCC
Q 036845 9 NSPCAACKFLRRKCVPG 25 (192)
Q Consensus 9 ~~~CAACK~lRRrC~~~ 25 (192)
..+|..|+..+-+|...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 46788999888888753
No 3
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=58.73 E-value=9.1 Score=25.02 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
..|..|+.+|..|+.+|..+++.|.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999998887663
No 4
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.07 E-value=14 Score=22.11 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
|..|+++..+|+.|++++.-||+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 567889999999999999888874
No 5
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=54.18 E-value=19 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
|.+..+++++..++.||+..+-||+...
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999998887653
No 6
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=52.63 E-value=8.9 Score=24.20 Aligned_cols=9 Identities=89% Similarity=1.966 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 036845 183 HGGGGGGGG 191 (192)
Q Consensus 183 ~~~~~~~~~ 191 (192)
+||||||||
T Consensus 12 egggggggg 20 (37)
T 2i9o_A 12 EGGGGGGGG 20 (37)
T ss_dssp CCSCCCCSC
T ss_pred ecCCCCCcc
Confidence 444444444
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=51.00 E-value=21 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+-.|..|+.+++.|++|++.++.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999988864
No 8
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.37 E-value=49 Score=25.06 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036845 70 SLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYACN 117 (192)
Q Consensus 70 SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~ 117 (192)
.++-+......-+..--.-.|..|+.++..++.|++.++.+++.+...
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~ 61 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445677788889999999999999999888776543
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.89 E-value=16 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
+..|+.+++.|+++++..+++|.
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.17 E-value=33 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+-.|..|+.+++.++.|++.++.+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557889998888888888777776643
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.72 E-value=21 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
+-.|..|+.+++.|+.+++.++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556888888888888888776653
No 12
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=44.55 E-value=9.3 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
|-.||++|.+|+.++..++++|.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999986
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.15 E-value=35 Score=24.46 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
..|..|+.+|+...+++...+.+|-.|..
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45888999999999999999999988843
No 14
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=42.01 E-value=6.3 Score=27.26 Aligned_cols=8 Identities=100% Similarity=2.195 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 036845 184 GGGGGGGG 191 (192)
Q Consensus 184 ~~~~~~~~ 191 (192)
||||||||
T Consensus 28 gggggggg 35 (62)
T 2i7u_A 28 GGGGGGGG 35 (62)
T ss_dssp CSSCSSSC
T ss_pred cCCCCchH
Confidence 34444443
No 15
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.08 E-value=36 Score=23.80 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 63 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 63 qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.|.+.+..-+=+++.|.. -.-.-|..|+..|..++.+|+.+...|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554431 12356788899999999999888887754
No 16
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.72 E-value=41 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
.+..|++||+.++.|++.++.++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566677777777666665544
No 17
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.02 E-value=50 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 85 GCVGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 85 GCvG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
|..|.+..|+.++...+.+++..++++
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei 27 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEI 27 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655555555555544
No 18
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=36.85 E-value=34 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
.|..|+.+++.||.+|...+..
T Consensus 5 ~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 5 KLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3556666667777666666654
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.52 E-value=39 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
=.-|..|+++|..++.+|+.++..|..
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999988887753
No 20
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.57 E-value=25 Score=25.02 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
|..-|++|..|+.+|..+..+|.
T Consensus 37 v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 37 LADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 21
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.90 E-value=35 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~ 108 (192)
.|..|.++|+.|+.||..++
T Consensus 57 Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 46777777777777776654
No 22
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.46 E-value=56 Score=21.88 Aligned_cols=14 Identities=0% Similarity=0.169 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 036845 93 LQRQVHRLQKELDS 106 (192)
Q Consensus 93 Lq~qI~~lq~EL~~ 106 (192)
|..+|.+|+.++..
T Consensus 16 L~~kVdqLssdV~a 29 (52)
T 1jcd_A 16 ANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 23
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=34.20 E-value=30 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
++..|+++++.|+.+|..++..|
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888877
No 24
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=34.16 E-value=53 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 92 FLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 92 ~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.+|.+|..++++|..+++++++
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 25
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.57 E-value=63 Score=22.75 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRYACN 117 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~~~~ 117 (192)
.|..|+..++.-++|+..++.+|-+|...
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888999999999999888443
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.09 E-value=59 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+..++.+|..++.+|..+++++.+.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777766543
No 27
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.13 E-value=63 Score=22.74 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+..++..|..++++|..+++++++
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666554
No 28
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.46 E-value=74 Score=20.76 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 92 FLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 92 ~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
.|-++|..+-.|++.+.++|..+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777776553
No 29
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.78 E-value=21 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.|..++.+|+.++.+++.++.++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888877764
No 30
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.53 E-value=81 Score=22.21 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=4.4
Q ss_pred HHHHHHhh
Q 036845 109 ADLIRYAC 116 (192)
Q Consensus 109 aeL~~~~~ 116 (192)
.||+.|..
T Consensus 47 ~EIatYRk 54 (74)
T 2xv5_A 47 MEIHAYRK 54 (74)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35566653
No 31
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.46 E-value=93 Score=20.49 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.|..|+.++..|+.|...++.+|...
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888777654
No 32
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=28.43 E-value=43 Score=25.09 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANA 109 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~a 109 (192)
..|..|+.+|+.|+.+|..+++
T Consensus 23 ~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 23 VKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666777777777766655
No 33
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.00 E-value=78 Score=21.17 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
|..|+.++..++.++..+++|-+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 34
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=27.71 E-value=1.8e+02 Score=21.20 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=30.7
Q ss_pred hhhHHhhhccchHHHHHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 40 FVNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANA 109 (192)
Q Consensus 40 Fa~vhkvFG~sNV~kmL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~a 109 (192)
+..+||+-|.+..+..- ..+. -+..-|...|..+++-..-..+..|..+|..+..++....+
T Consensus 53 ~~~aHkLkGaa~~~Ga~-----~L~~---~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 53 LSTIHKLHGASCYCGVP-----TTQR---LCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHHHHTTTTCH-----HHHH---HHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHH-----HHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478887776533221 1111 11223556677777655555555555555555444444333
No 35
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.62 E-value=68 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
.|.+||..|.+|+.+|...+.+.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 47789999999999888877654
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.11 E-value=1.1e+02 Score=20.57 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
..+..|+.++..|+.+...+.+++...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888777654
No 37
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.00 E-value=71 Score=23.56 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 90 ISFLQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
+.+|+.+++.++.|+..++.+|.+...
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999999987643
No 38
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.81 E-value=42 Score=24.69 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 92 FLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 92 ~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.|+..|..|+++++.+..+|..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 39
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.47 E-value=88 Score=18.43 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036845 91 SFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 91 ~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
..|..+++.||+.|..++.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888877763
No 40
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.42 E-value=69 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036845 67 AVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 67 a~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~ 108 (192)
-+..|.-||.. +|..|+.+|..|++||+..+
T Consensus 30 ele~l~~E~q~-----------~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 30 QLENMKTESQR-----------VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 35566666654 57899999999999999875
No 41
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.68 E-value=94 Score=22.90 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 63 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 63 qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
+|.-..+-=.|-+++|.+= +-.+..|+.++..|+.|++.++.|+.
T Consensus 28 q~RRtlKNRgyAq~CR~Kr-----~~q~~~LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKR-----VQQKHHLENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777778888888762 34444455444444444444444443
No 42
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.45 E-value=1.1e+02 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
.+..|+.+|+.||.+|+..++.|
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555544
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.33 E-value=1e+02 Score=23.57 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~ 108 (192)
|-.|+..|..|+.+|..++
T Consensus 17 Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.33 E-value=95 Score=23.20 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 67 AVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 67 a~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
....-+-|++.|-. ..+..++.+|..++.+|..+++++++
T Consensus 61 ~LE~~l~e~e~~~~-------~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 61 NLQNAIADAEQRGE-------LALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444556666532 24566666777777777777766654
No 45
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.14 E-value=79 Score=22.86 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036845 93 LQRQVHRLQKELDSANADLIRYAC 116 (192)
Q Consensus 93 Lq~qI~~lq~EL~~a~aeL~~~~~ 116 (192)
|+++|..|+.++..++.+|..+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999998877654
No 46
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=23.35 E-value=1.4e+02 Score=22.00 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=35.3
Q ss_pred hhHHhhhccchHHHHHhhcCchhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 41 VNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 41 a~vhkvFG~sNV~kmL~~l~~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
..+||+-|.+..+.. +..+ .-+...|...|..+++. .+...+..|+.|++.+..+...|.
T Consensus 63 ~~aHkLkGaa~~~Ga-----~~L~---~~c~~LE~~~r~g~~~~-------~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 63 DLIHKLHGSCGYSGV-----PRMK---NLCQLIEQQLRSGTKEE-------DLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHHHHHTTSCC-----HHHH---HHHHHHHHHHHTTCCGG-------GGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCH-----HHHH---HHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347777776553221 1111 11223466677777753 566677778888888887777664
No 47
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.32 E-value=1.1e+02 Score=22.37 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
+..+|..|..++++|..++++++
T Consensus 39 ~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 48
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=23.31 E-value=1.2e+02 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036845 94 QRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 94 q~qI~~lq~EL~~a~aeL~~~~ 115 (192)
|..|-..+.||..|+..|+...
T Consensus 14 qe~iLr~ErELEeAr~~La~iR 35 (50)
T 2qdq_A 14 QEEMLRKERELEEARKKLAQIR 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777889999999887543
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.04 E-value=1e+02 Score=23.11 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 66 DAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 66 da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.....-+-|++.|-. ..+..++..|..++.+|..+++++++
T Consensus 62 ~sLE~~l~e~e~~~~-------~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 62 ASLENSLEETKGRYC-------MQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666532 23556666777777777777766654
No 50
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.96 E-value=94 Score=26.16 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
-.+..|+.+|+.++.+|..++++|..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888777777666443
No 51
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=22.28 E-value=48 Score=30.11 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=46.2
Q ss_pred chhhhhHHhhhccchHHHHHhhc---CchhHHHHHHHHHHh----hhhcccCCCCCcHHH------------------HH
Q 036845 37 PQKFVNVHKIFGASNMTKLLNDL---LPHQREDAVNSLAYE----AEARVRDPVYGCVGA------------------IS 91 (192)
Q Consensus 37 pq~Fa~vhkvFG~sNV~kmL~~l---~~~qR~da~~SLvYE----A~aR~rDPVyGCvG~------------------I~ 91 (192)
.+.++.+||.|...+-.=++++. .++++.+-..-+|.+ |-+++.-|+.||+-. +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 35666788888766665555543 333333444555554 557899999998743 46
Q ss_pred HHHHHHHHHHHHHH
Q 036845 92 FLQRQVHRLQKELD 105 (192)
Q Consensus 92 ~Lq~qI~~lq~EL~ 105 (192)
.++.+|++|+.||.
T Consensus 223 ~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 223 AVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 78999999998884
No 52
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.05 E-value=1.1e+02 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.+-|..||.+|...+.+|..|+.+|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998885
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.93 E-value=1e+02 Score=22.24 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.-|..|+.+|..++.+|+.+...|..
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887777653
No 54
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.76 E-value=1.1e+02 Score=22.02 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=24.3
Q ss_pred hHHhhhccchHHHHHhhcC-chhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036845 42 NVHKIFGASNMTKLLNDLL-PHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSA 107 (192)
Q Consensus 42 ~vhkvFG~sNV~kmL~~l~-~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a 107 (192)
++|.+|--.+.-.|.+.|. ...+-+-+.+|+.|+++= ...|..|+..|+.||...
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHH
Confidence 4555555556666666665 345678899999998752 234677777777776654
No 55
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.73 E-value=89 Score=25.68 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 61 PHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADL 111 (192)
Q Consensus 61 ~~qR~da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL 111 (192)
.+.|.++++-|+=.|. ..|..||.+|+.|+.+|...+.+-
T Consensus 119 a~~paE~ireli~~Ae-----------rtV~kLqkeiD~LEDeL~~eKek~ 158 (175)
T 3mud_A 119 VENPAEVIRELICYCL-----------DTTAKNEKSIDDLEEKVAHAKEEN 158 (175)
T ss_dssp CSCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888876654 578899999999999998887754
No 56
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.53 E-value=1.3e+02 Score=19.61 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
.+-.||-++++|-+|..+.+..|.
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666554
No 57
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.89 E-value=96 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIRYA 115 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~~~ 115 (192)
-|.-..+..+|+.|+.+|..++.+|..+.
T Consensus 15 ~g~~~~~~~~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 15 RGDSRAIEVKLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788889999999999999998753
No 58
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.73 E-value=1.1e+02 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036845 93 LQRQVHRLQKELDSANADL 111 (192)
Q Consensus 93 Lq~qI~~lq~EL~~a~aeL 111 (192)
|..+...|+.++...+.++
T Consensus 34 L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333
No 59
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=20.27 E-value=81 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 88 GAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 88 G~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
|-+..+.+|.++.|+++..+|++|+.
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~ 66 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKE 66 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34788899999999999999999975
No 60
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=20.07 E-value=3.1e+02 Score=21.19 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 62 HQREDAVNSLAYEAEARVRDPVY-GCVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 62 ~qR~da~~SLvYEA~aR~rDPVy-GCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+|...+++-+=.|.-=..|||. -.+-.|..|+..-+..++.|..+++++...
T Consensus 18 AKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i 71 (129)
T 1wlx_A 18 AKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAI 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57888999999999999999999 789999999999999999998888766543
Done!