Query 036845
Match_columns 192
No_of_seqs 138 out of 323
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 09:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 63.0 6 0.00044 26.3 5.0 49 66-114 15-63 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 58.9 6.7 0.00049 24.6 4.3 26 87-112 32-57 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 43.1 38 0.0028 21.9 7.1 27 87-113 51-77 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 40.0 21 0.0015 23.0 4.6 29 86-114 48-76 (80)
5 d1urfa_ a.2.6.1 (A:) Protein k 31.9 49 0.0036 22.1 5.5 46 47-110 25-72 (81)
6 d1seta1 a.2.7.1 (A:1-110) Sery 30.6 57 0.0042 21.7 5.8 26 89-114 72-97 (110)
7 d3coqa1 g.38.1.1 (A:8-48) Gal4 26.8 16 0.0011 21.1 1.8 15 10-24 2-16 (41)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.4 46 0.0034 22.6 4.7 26 89-114 9-34 (133)
9 d1pyia1 g.38.1.1 (A:30-71) PPR 23.5 22 0.0016 20.6 2.1 17 9-25 2-18 (42)
10 d1nkpb_ a.38.1.1 (B:) Max prot 23.3 63 0.0046 20.5 4.7 27 87-113 46-72 (83)
11 d1clda_ g.38.1.1 (A:) CD2-Lac9 22.2 20 0.0014 19.9 1.6 16 10-25 1-16 (33)
12 d2otaa1 a.284.1.1 (A:7-68) Hyp 21.8 32 0.0023 22.5 2.8 20 52-71 35-54 (62)
13 d1lrza1 a.2.7.4 (A:245-309) Me 21.4 54 0.004 21.0 4.0 25 89-113 4-28 (65)
14 d1zmec1 g.38.1.1 (C:31-66) PUT 20.8 25 0.0018 20.0 1.9 15 10-24 2-16 (36)
15 d1uuja_ a.221.1.1 (A:) Lissenc 20.2 27 0.002 23.4 2.2 19 90-108 57-75 (76)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.99 E-value=6 Score=26.34 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 66 DAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 66 da~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
+-+.+=+-|+..-+.+|++|-...|..+.++.+.+++||..-+..|...
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l 63 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKL 63 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888889999999999999999999999999998887654
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.89 E-value=6.7 Score=24.64 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLI 112 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~ 112 (192)
+-.|..||+++..|++|+...+.++.
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999888764
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.10 E-value=38 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+-.|..|+.++..++.+++..+.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888877777666543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.00 E-value=21 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 86 CVGAISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 86 CvG~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+-.|..|+.+++.|++|.+..+.++...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999888887654
No 5
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.86 E-value=49 Score=22.06 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=28.2
Q ss_pred hccchHHHHHhhcCchhHHH--HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 47 FGASNMTKLLNDLLPHQRED--AVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDSANAD 110 (192)
Q Consensus 47 FG~sNV~kmL~~l~~~qR~d--a~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qI~~lq~EL~~a~ae 110 (192)
=|+.||++++..-...+|.. -+++++-| -.++|+.|+.+|..+++.
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l~eaq~~l~e------------------S~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLLLTAQQMLQD------------------SKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHh
Confidence 48999999999866555532 33333333 345566666666665553
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=30.56 E-value=57 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
-+..|..+|..+++++..+.++|..+
T Consensus 72 ~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 72 RGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888765
No 7
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.79 E-value=16 Score=21.12 Aligned_cols=15 Identities=27% Similarity=0.857 Sum_probs=12.6
Q ss_pred CCChhhhhhhcCCCC
Q 036845 10 SPCAACKFLRRKCVP 24 (192)
Q Consensus 10 ~~CAACK~lRRrC~~ 24 (192)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999964
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.44 E-value=46 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIRY 114 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~~ 114 (192)
.+..|+++++.+++++..++..+..|
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~ 34 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655444
No 9
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.46 E-value=22 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.741 Sum_probs=13.8
Q ss_pred CCCChhhhhhhcCCCCC
Q 036845 9 NSPCAACKFLRRKCVPG 25 (192)
Q Consensus 9 ~~~CAACK~lRRrC~~~ 25 (192)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46899999999999753
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.29 E-value=63 Score=20.53 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 87 VGAISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 87 vG~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
+-.|..|+.++..++.++...+.+...
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 72 (83)
T d1nkpb_ 46 TEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888887777765543
No 11
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=22.23 E-value=20 Score=19.92 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.3
Q ss_pred CCChhhhhhhcCCCCC
Q 036845 10 SPCAACKFLRRKCVPG 25 (192)
Q Consensus 10 ~~CAACK~lRRrC~~~ 25 (192)
.+|..||..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999753
No 12
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=21.75 E-value=32 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=16.1
Q ss_pred HHHHHhhcCchhHHHHHHHH
Q 036845 52 MTKLLNDLLPHQREDAVNSL 71 (192)
Q Consensus 52 V~kmL~~l~~~qR~da~~SL 71 (192)
|+++|+.+++.+|...+++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56777889999999877664
No 13
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=21.39 E-value=54 Score=21.04 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036845 89 AISFLQRQVHRLQKELDSANADLIR 113 (192)
Q Consensus 89 ~I~~Lq~qI~~lq~EL~~a~aeL~~ 113 (192)
.|..|+.+...|.++|+.+.+.|..
T Consensus 4 Yl~~L~~~~~~L~~~i~k~~~~lek 28 (65)
T d1lrza1 4 YIKELNEERDILNKDLNKALKDIEK 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888764
No 14
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.84 E-value=25 Score=20.00 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=11.6
Q ss_pred CCChhhhhhhcCCCC
Q 036845 10 SPCAACKFLRRKCVP 24 (192)
Q Consensus 10 ~~CAACK~lRRrC~~ 24 (192)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 478888888888864
No 15
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.21 E-value=27 Score=23.44 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036845 90 ISFLQRQVHRLQKELDSAN 108 (192)
Q Consensus 90 I~~Lq~qI~~lq~EL~~a~ 108 (192)
|-.||.+|.+|+.++..++
T Consensus 57 ViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 57 VIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5679999999999887654
Done!