BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036854
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
           Complex
 pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
           Complex
          Length = 289

 Score = 30.0 bits (66), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 95  GESDDEARRVFVPVIYFNHPLFGELLKQAERVYGF-NHPGGITIPCRISEFEKVKT 149
           G   DE +R++   I+   P  G L   AE ++ F      ITIPCR+++ + V T
Sbjct: 75  GLETDERKRLY---IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVT 127


>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
 pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
 pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
 pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
          Length = 490

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 33  LGGAVSQSTRSSCKAMSKFLSMASCIRRGAKKLCFPSSNPG-FIQLGQEKP--------- 82
           L GA++ +  S  K  +    + S  R G  +L  P + PG  I  G+  P         
Sbjct: 304 LSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMV 363

Query: 83  -AEVPKGHLAVYVGESDDE-ARRVFVPVIYFN 112
            A+V   H+AV VG S+      VF P++  N
Sbjct: 364 AAQVMGNHVAVTVGGSNGHFELNVFKPMMIKN 395


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,973,574
Number of Sequences: 62578
Number of extensions: 182942
Number of successful extensions: 427
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 3
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)