Query 036854
Match_columns 167
No_of_seqs 185 out of 640
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 09:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 52.8 14 0.001 24.6 5.4 46 100-147 14-68 (85)
2 d1nn7a_ d.42.1.2 (A:) Potassiu 51.4 2.3 0.00017 28.8 1.0 58 90-155 2-62 (105)
3 d1unda_ a.14.1.1 (A:) Advillin 49.5 2 0.00014 24.8 0.3 18 110-127 1-18 (36)
4 d1zj8a1 d.58.36.1 (A:327-406) 42.8 21 0.0016 22.1 4.9 67 87-154 3-75 (80)
5 d1t1da_ d.42.1.2 (A:) Shaker p 41.6 9.2 0.00067 25.5 3.0 59 90-155 3-64 (100)
6 d1y6ia2 a.261.1.1 (A:83-233) M 39.7 1.6 0.00012 32.3 -1.5 60 53-118 87-148 (151)
7 d3kvta_ d.42.1.2 (A:) akv3.1 v 32.6 7 0.00051 26.1 1.1 58 89-154 3-64 (103)
8 d1vi7a2 d.58.11.2 (A:138-208) 30.9 43 0.0031 19.9 4.8 52 101-154 2-61 (71)
9 d1yu5x1 a.14.1.1 (X:10-76) Vil 27.7 6.9 0.00051 25.2 0.3 19 109-127 31-49 (67)
10 d1z3xa2 a.261.1.1 (A:88-235) G 24.2 1.9 0.00014 31.8 -3.5 31 82-117 117-147 (148)
11 d1ujsa_ a.14.1.1 (A:) Actin-bi 23.4 10 0.00074 25.6 0.5 20 109-128 46-65 (88)
12 d2al3a1 d.15.1.2 (A:10-85) Tet 22.5 40 0.0029 21.8 3.5 31 100-132 9-39 (76)
13 d1fc4a_ c.67.1.4 (A:) 2-amino- 22.2 39 0.0029 26.6 4.1 32 100-131 43-79 (401)
14 d1qzpa_ a.14.1.1 (A:) Dematin 21.9 7.6 0.00056 25.0 -0.3 19 109-127 32-50 (68)
15 d1yu8x1 a.14.1.1 (X:42-76) Vil 20.2 12 0.00085 21.2 0.3 17 111-127 1-17 (35)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.77 E-value=14 Score=24.56 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=35.1
Q ss_pred CceeEEEeeeccCchHHHHHHHhhHHhcCcc--------C-CCceeecCcHHHHHHH
Q 036854 100 EARRVFVPVIYFNHPLFGELLKQAERVYGFN--------H-PGGITIPCRISEFEKV 147 (167)
Q Consensus 100 ~~rRfvVP~~yLnhPlF~eLL~~AeEEfGf~--------~-~G~L~IPC~~~~Fe~v 147 (167)
+..||.|+.. +++.|.+|..+-+.-|+.+ . +--++|.|++++=|.+
T Consensus 14 dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 14 EIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp EEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred ceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 8999998643 4788999999999888843 2 3558999998876644
No 2
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=51.37 E-value=2.3 Score=28.85 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=40.8
Q ss_pred EEEEEcccCCCceeEEEeeecc-CchH--HHHHHHhhHHhcCccCCCceeecCcHHHHHHHHHHHhcCC
Q 036854 90 LAVYVGESDDEARRVFVPVIYF-NHPL--FGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWD 155 (167)
Q Consensus 90 ~aVYVG~~~~~~rRfvVP~~yL-nhPl--F~eLL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i~~~~ 155 (167)
+.+-|| ..+|.+..+-| ++|- +..| ....+--+.+|.+-|--|...|++||..+..+.
T Consensus 2 I~LNVG-----G~~f~t~~~TL~~~p~s~l~~~---~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVS-----GTRFQTWQDTLERYPDTLLGSS---ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEET-----TEEEEECHHHHHTSCSSSTTSG---GGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEC-----CEEEEEeHHHHhcCCCCCcccc---ccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 456788 48999998877 4443 2222 222332355699999999999999999998764
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.46 E-value=2 Score=24.82 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=16.7
Q ss_pred ccCchHHHHHHHhhHHhc
Q 036854 110 YFNHPLFGELLKQAERVY 127 (167)
Q Consensus 110 yLnhPlF~eLL~~AeEEf 127 (167)
||+...|++++.|+.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999997
No 4
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.81 E-value=21 Score=22.14 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=43.2
Q ss_pred CCeEEEEEcccCCCceeEEEeeeccCchHHHHHHHhhHHhcC-----ccCCCceeecC-cHHHHHHHHHHHhcC
Q 036854 87 KGHLAVYVGESDDEARRVFVPVIYFNHPLFGELLKQAERVYG-----FNHPGGITIPC-RISEFEKVKTRIDAW 154 (167)
Q Consensus 87 kG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~eLL~~AeEEfG-----f~~~G~L~IPC-~~~~Fe~vl~~i~~~ 154 (167)
..|+=||--+++.-.-|..||.-.++.+.+..|.+.|+ +|| +.....|.|+- +.+..+.++..+++.
T Consensus 3 ~dh~Gv~~q~dG~~~vri~~p~G~it~~ql~~la~ia~-~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~~~ 75 (80)
T d1zj8a1 3 IDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMA-RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDAL 75 (80)
T ss_dssp CCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHH-HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHT
T ss_pred CCcceEeeecCCcEEEEEeccCcEECHHHHHHHHHHHH-HhCCCeEEECCCCcEEEcCCCHHHHHHHHHHHHHc
Confidence 34555554432222345557777888888888888665 565 33456677774 778888888887654
No 5
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=41.58 E-value=9.2 Score=25.48 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=41.4
Q ss_pred EEEEEcccCCCceeEEEeeeccCc-h--HHHHHHHhhHHhcCccCCCceeecCcHHHHHHHHHHHhcCC
Q 036854 90 LAVYVGESDDEARRVFVPVIYFNH-P--LFGELLKQAERVYGFNHPGGITIPCRISEFEKVKTRIDAWD 155 (167)
Q Consensus 90 ~aVYVG~~~~~~rRfvVP~~yLnh-P--lF~eLL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i~~~~ 155 (167)
+.+-|| .++|.+..+-|.. | .+..|..... .+ -+.+|.+-|--|...|++||..+..+.
T Consensus 3 I~LNVG-----G~~f~t~~~tL~~~p~s~l~~l~~~~~-~~-~~~~g~~FiDRdp~~F~~IL~flR~~~ 64 (100)
T d1t1da_ 3 VVINVS-----GLRFETQLKTLNQFPDTLLGNPQKRNR-YY-DPLRNEYFFDRNRPSFDAILYFYQSGG 64 (100)
T ss_dssp EEEEET-----TEEEEEEHHHHHTSTTSTTTCHHHHGG-GE-ETTTTEEEECSCSTTHHHHHHHHHTTS
T ss_pred EEEEEC-----CEEEEEeHHHHhhCCCchhHHHHhCCC-cC-CCCCCeEEEecCHHHHHHHHHHHhcCC
Confidence 456677 4899998877654 3 4444443221 11 245699999999999999999997643
No 6
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=39.69 E-value=1.6 Score=32.28 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHHHHHhhcccccCCCCCCccccCCC--CCCCCCCCCeEEEEEcccCCCceeEEEeeeccCchHHHH
Q 036854 53 SMASCIRRGAKKLCFPSSNPGFIQLGQ--EKPAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFGE 118 (167)
Q Consensus 53 ~~~rKwqk~akrl~~~~s~~~~~~~~~--~~~~~vpkG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~e 118 (167)
+..+.|.+++.++--.... .+..-.. .=+..+|+||+|+.-.- .+. -|--..|+||.|.+
T Consensus 87 ~~g~~~~~F~~~VGWr~~~-~w~~y~~~l~f~l~AP~GHLP~~~~l-rG~----~~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 87 ASGKEFTKLWPKIGWKSGN-VWTRWPKGFTWDLSAPQGHLPLLNQL-RGV----RVAESLYRHPVWSQ 148 (151)
T ss_dssp HTTTCHHHHHHHHTCCTTC-CCSSCCCSCCCSTTSCTTCCSCCCCT-TCT----HHHHHHHTSTHHHH
T ss_pred HcCCCHHHHHHHcCcCCCC-cccCCHhhccccCCCCCCCCCccchh-hhH----HHHHHHHcCcchhh
Confidence 3345566666444443322 1211111 12346899999985421 111 12235789999865
No 7
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=32.62 E-value=7 Score=26.10 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=41.0
Q ss_pred eEEEEEcccCCCceeEEEeeeccCc-h--HHHHHHHhhHHhcCc-cCCCceeecCcHHHHHHHHHHHhcC
Q 036854 89 HLAVYVGESDDEARRVFVPVIYFNH-P--LFGELLKQAERVYGF-NHPGGITIPCRISEFEKVKTRIDAW 154 (167)
Q Consensus 89 ~~aVYVG~~~~~~rRfvVP~~yLnh-P--lF~eLL~~AeEEfGf-~~~G~L~IPC~~~~Fe~vl~~i~~~ 154 (167)
.+.+=|| .++|.+..+-|.. | .|..++ +....+ +.+|.+-|--|...|++||..+..+
T Consensus 3 rI~LNVG-----G~~F~t~~~tL~~~~~s~l~~~~---~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g 64 (103)
T d3kvta_ 3 RVIINVG-----GIRHETYKATLKKIPATRLSRLT---EGMLNYDPVLNEYFFDRHPGVFAQIINYYRSG 64 (103)
T ss_dssp EEEEEET-----TEEEEEEHHHHTTSCSSTTTTCC---TTSTTEETTTTEEEECSCTTTHHHHHHHHHHS
T ss_pred EEEEEEC-----CEEEEEeHHHHhhCccchhHHHH---cCCCccCCCCCcEEecCCHHHHHHHHHHHccC
Confidence 4556677 4899999887763 3 333332 222233 3468999999999999999999876
No 8
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.86 E-value=43 Score=19.94 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=37.2
Q ss_pred ceeEEEeeeccCchHHHHHHHhhH-----HhcCccCCCcee--ecC-cHHHHHHHHHHHhcC
Q 036854 101 ARRVFVPVIYFNHPLFGELLKQAE-----RVYGFNHPGGIT--IPC-RISEFEKVKTRIDAW 154 (167)
Q Consensus 101 ~rRfvVP~~yLnhPlF~eLL~~Ae-----EEfGf~~~G~L~--IPC-~~~~Fe~vl~~i~~~ 154 (167)
+.+|.+.++|-.-..++-||++.. ++|+ .+=.|+ ||. +++.|..-+..+.++
T Consensus 2 ~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~--~~V~l~v~vp~~~~~~f~~~l~d~t~G 61 (71)
T d1vi7a2 2 LTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQ--AFVLLRVALPAAKVAEFSAKLADFSRG 61 (71)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTCEEEEEEES--SSEEEEEEECSSTHHHHHHHHHHHHTT
T ss_pred ceEEEEEeccccHHHHHHHHHHCCCEEEeeeec--cEEEEEEEECHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999874 3554 333344 443 567777777666555
No 9
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.71 E-value=6.9 Score=25.16 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=18.0
Q ss_pred eccCchHHHHHHHhhHHhc
Q 036854 109 IYFNHPLFGELLKQAERVY 127 (167)
Q Consensus 109 ~yLnhPlF~eLL~~AeEEf 127 (167)
.||+...|++++.|+.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 10
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.23 E-value=1.9 Score=31.79 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEEcccCCCceeEEEeeeccCchHHH
Q 036854 82 PAEVPKGHLAVYVGESDDEARRVFVPVIYFNHPLFG 117 (167)
Q Consensus 82 ~~~vpkG~~aVYVG~~~~~~rRfvVP~~yLnhPlF~ 117 (167)
+..+|+||+|+.-. .+-+-|=-..|+||.|.
T Consensus 117 ~l~AP~GHLP~~~~-----lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 117 DLSAPRGHLPLTNQ-----LRGVQVLNALLNHPAWT 147 (148)
T ss_dssp STTSCTTCCSCCCC-----TTCSHHHHHHHTCGGGG
T ss_pred cCCCCCCCCCcCCc-----cchHHHHHHHhcCcccc
Confidence 34689999998532 23333444678888763
No 11
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.44 E-value=10 Score=25.62 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=18.5
Q ss_pred eccCchHHHHHHHhhHHhcC
Q 036854 109 IYFNHPLFGELLKQAERVYG 128 (167)
Q Consensus 109 ~yLnhPlF~eLL~~AeEEfG 128 (167)
.||+..-|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 12
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.55 E-value=40 Score=21.82 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.2
Q ss_pred CceeEEEeeeccCchHHHHHHHhhHHhcCccCC
Q 036854 100 EARRVFVPVIYFNHPLFGELLKQAERVYGFNHP 132 (167)
Q Consensus 100 ~~rRfvVP~~yLnhPlF~eLL~~AeEEfGf~~~ 132 (167)
..+|..|++. -.-...+.|++|-+.|||+.+
T Consensus 9 ~~rR~~VKvt--P~t~l~~VL~eaC~k~~~~~~ 39 (76)
T d2al3a1 9 NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 39 (76)
T ss_dssp TSCEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred CCcEEEEEeC--CCcCHHHHHHHHHHHhCCChh
Confidence 6789988874 344678899999999999753
No 13
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=22.19 E-value=39 Score=26.58 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=24.2
Q ss_pred CceeEE--Eeeecc---CchHHHHHHHhhHHhcCccC
Q 036854 100 EARRVF--VPVIYF---NHPLFGELLKQAERVYGFNH 131 (167)
Q Consensus 100 ~~rRfv--VP~~yL---nhPlF~eLL~~AeEEfGf~~ 131 (167)
|.++|+ ..-+|| +||.+++.+.++-+.||...
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 456664 344676 39999999999999999754
No 14
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.93 E-value=7.6 Score=25.03 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=18.0
Q ss_pred eccCchHHHHHHHhhHHhc
Q 036854 109 IYFNHPLFGELLKQAERVY 127 (167)
Q Consensus 109 ~yLnhPlF~eLL~~AeEEf 127 (167)
.||+..-|++++.|+.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 15
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.17 E-value=12 Score=21.16 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=14.2
Q ss_pred cCchHHHHHHHhhHHhc
Q 036854 111 FNHPLFGELLKQAERVY 127 (167)
Q Consensus 111 LnhPlF~eLL~~AeEEf 127 (167)
|+...|++++.|+.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999999887
Done!