BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036856
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
           From Enterococcus Faecalis
          Length = 126

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 3   EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGL 60
           EA  L+  +F +   E +  ++F    L E+GI+T    + D  GK K  FFFDPDG  L
Sbjct: 70  EALGLRHLAFKVEHIEEV--IAF----LNEQGIETEPLRVDDFTGK-KXTFFFDPDGLPL 122

Query: 61  EV 62
           E+
Sbjct: 123 EL 124


>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
           Vpc_cass1
 pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
           Vpc_cass1
          Length = 133

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 39  QRSLPDGKVKQVFFFDPDGNGLEVAS 64
           +R+   G +   +F DPDGN +EV++
Sbjct: 104 KRTGAQGAITSFYFRDPDGNLIEVST 129


>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
           Integron Cassette Protein Vch_cass1
 pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
           Integron Cassette Protein Vch_cass1
          Length = 133

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 39  QRSLPDGKVKQVFFFDPDGNGLEVAS 64
           +R+   G +   +F DPDGN +EV++
Sbjct: 104 KRTGAQGAITSFYFRDPDGNLIEVST 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,879,061
Number of Sequences: 62578
Number of extensions: 56103
Number of successful extensions: 161
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)