Query 036856
Match_columns 68
No_of_seqs 103 out of 336
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.3 2.7E-11 5.8E-16 75.4 6.7 54 6-65 87-141 (142)
2 cd07241 Glo_EDI_BRP_like_3 Thi 99.2 4.6E-11 9.9E-16 71.5 7.4 56 5-63 69-125 (125)
3 PRK10291 glyoxalase I; Provisi 99.2 4.1E-11 8.9E-16 74.0 7.0 55 6-66 65-121 (129)
4 cd09012 Glo_EDI_BRP_like_24 Th 99.2 5.3E-11 1.1E-15 72.7 6.6 56 6-64 68-123 (124)
5 cd08364 FosX FosX, a fosfomyci 99.2 5.2E-11 1.1E-15 74.5 6.6 57 6-66 66-123 (131)
6 PRK11478 putative lyase; Provi 99.2 8E-11 1.7E-15 71.7 7.2 53 6-64 75-128 (129)
7 cd08357 Glo_EDI_BRP_like_18 Th 99.2 5.3E-11 1.1E-15 71.6 6.2 56 6-65 65-125 (125)
8 cd08351 ChaP_like ChaP, an enz 99.2 1.2E-10 2.5E-15 71.4 7.1 58 5-66 57-122 (123)
9 cd07242 Glo_EDI_BRP_like_6 Thi 99.2 1.3E-10 2.7E-15 70.7 7.0 57 6-65 68-128 (128)
10 PRK04101 fosfomycin resistance 99.2 9.8E-11 2.1E-15 73.7 6.4 58 5-66 62-120 (139)
11 cd07252 BphC1-RGP6_N_like N-te 99.2 1.4E-10 3.1E-15 71.0 6.8 60 6-68 57-120 (120)
12 cd07243 2_3_CTD_C C-terminal d 99.2 1.3E-10 2.9E-15 74.2 6.8 57 5-64 66-124 (143)
13 cd07265 2_3_CTD_N N-terminal d 99.2 2.6E-10 5.6E-15 69.3 7.6 59 5-66 60-120 (122)
14 cd08354 Glo_EDI_BRP_like_13 Th 99.2 1.6E-10 3.4E-15 69.3 6.6 56 5-64 66-121 (122)
15 cd08344 MhqB_like_N N-terminal 99.2 1.3E-10 2.9E-15 70.2 6.2 57 5-66 54-110 (112)
16 cd08347 PcpA_C_like C-terminal 99.1 1.6E-10 3.5E-15 75.3 6.9 58 5-66 64-121 (157)
17 cd07258 PpCmtC_C C-terminal do 99.1 2.2E-10 4.9E-15 73.5 7.4 60 4-66 54-115 (141)
18 cd08363 FosB FosB, a fosfomyci 99.1 1.2E-10 2.6E-15 73.0 5.6 57 5-65 58-115 (131)
19 cd09013 BphC-JF8_N_like N-term 99.1 3.1E-10 6.7E-15 69.1 7.0 58 5-66 61-119 (121)
20 cd08345 Fosfomycin_RP Fosfomyc 99.1 2.4E-10 5.2E-15 68.0 5.9 56 5-64 54-110 (113)
21 cd07237 BphC1-RGP6_C_like C-te 99.1 3.1E-10 6.6E-15 73.2 6.5 58 5-65 72-131 (154)
22 cd07233 Glyoxalase_I Glyoxalas 99.1 5E-10 1.1E-14 67.0 6.9 52 6-63 70-121 (121)
23 PRK06724 hypothetical protein; 99.1 6.2E-10 1.3E-14 70.6 7.4 60 5-67 62-125 (128)
24 cd07255 Glo_EDI_BRP_like_12 Th 99.1 7.9E-10 1.7E-14 66.8 7.0 58 5-66 63-120 (125)
25 cd08360 MhqB_like_C C-terminal 99.1 5.3E-10 1.2E-14 69.8 6.1 58 5-65 61-120 (134)
26 cd07253 Glo_EDI_BRP_like_2 Thi 99.1 8E-10 1.7E-14 65.7 6.5 55 6-65 67-125 (125)
27 cd08342 HPPD_N_like N-terminal 99.1 1.1E-09 2.3E-14 68.8 7.2 57 5-67 68-125 (136)
28 cd07245 Glo_EDI_BRP_like_9 Thi 99.0 6.5E-10 1.4E-14 64.5 5.4 52 5-62 63-114 (114)
29 cd07244 FosA FosA, a Fosfomyci 99.0 7.1E-10 1.5E-14 67.8 5.8 57 4-66 55-111 (121)
30 PLN02367 lactoylglutathione ly 99.0 1.3E-09 2.8E-14 77.0 7.7 55 6-66 169-223 (233)
31 cd09011 Glo_EDI_BRP_like_23 Th 99.0 1E-09 2.2E-14 66.7 6.3 52 8-65 66-119 (120)
32 cd07266 HPCD_N_class_II N-term 99.0 1.2E-09 2.7E-14 65.9 6.6 59 5-66 59-119 (121)
33 cd08343 ED_TypeI_classII_C C-t 99.0 1.5E-09 3.3E-14 67.2 7.2 60 4-66 57-118 (131)
34 TIGR00068 glyox_I lactoylgluta 99.0 1.4E-09 3.1E-14 69.1 6.9 56 6-67 86-143 (150)
35 PF12681 Glyoxalase_2: Glyoxal 99.0 3.7E-09 8E-14 62.3 7.9 53 5-63 55-108 (108)
36 cd07254 Glo_EDI_BRP_like_20 Th 99.0 1.9E-09 4.1E-14 65.2 6.7 59 5-66 57-118 (120)
37 TIGR03645 glyox_marine lactoyl 99.0 1.3E-09 2.8E-14 71.0 6.4 58 5-68 92-154 (162)
38 cd07240 ED_TypeI_classII_N N-t 99.0 2.4E-09 5.2E-14 63.7 7.0 60 5-67 56-116 (117)
39 cd08361 PpCmtC_N N-terminal do 99.0 1.7E-09 3.6E-14 66.9 6.3 58 6-66 59-120 (124)
40 cd07239 BphC5-RK37_C_like C-te 99.0 1.9E-09 4.1E-14 69.1 6.6 58 5-65 58-117 (144)
41 cd07263 Glo_EDI_BRP_like_16 Th 99.0 2.5E-09 5.4E-14 62.9 6.6 53 5-63 66-118 (119)
42 cd08346 PcpA_N_like N-terminal 99.0 2.4E-09 5.1E-14 63.9 6.6 54 6-63 73-126 (126)
43 PLN03042 Lactoylglutathione ly 99.0 2.4E-09 5.1E-14 72.7 7.4 55 6-66 121-175 (185)
44 cd07261 Glo_EDI_BRP_like_11 Th 99.0 2E-09 4.4E-14 64.4 6.3 56 5-63 58-113 (114)
45 cd08362 BphC5-RrK37_N_like N-t 99.0 2.8E-09 6.1E-14 63.9 6.6 59 6-67 58-119 (120)
46 TIGR03211 catechol_2_3 catecho 99.0 2.1E-09 4.5E-14 74.9 6.7 56 5-63 206-263 (303)
47 cd07257 THT_oxygenase_C The C- 99.0 3.1E-09 6.7E-14 68.4 6.7 58 5-65 66-125 (153)
48 cd07256 HPCD_C_class_II C-term 98.9 2.9E-09 6.3E-14 69.0 6.4 57 5-64 62-122 (161)
49 cd07262 Glo_EDI_BRP_like_19 Th 98.9 3E-09 6.5E-14 64.4 6.0 55 6-63 64-122 (123)
50 cd07267 THT_Oxygenase_N N-term 98.9 6.3E-09 1.4E-13 63.0 6.9 56 5-66 56-111 (113)
51 cd07247 SgaA_N_like N-terminal 98.9 8.9E-09 1.9E-13 61.4 7.4 54 5-64 60-114 (114)
52 cd07238 Glo_EDI_BRP_like_5 Thi 98.9 9.1E-09 2E-13 61.5 7.0 53 7-65 58-111 (112)
53 cd08348 BphC2-C3-RGP6_C_like T 98.9 6.4E-09 1.4E-13 63.9 6.4 58 5-66 64-121 (134)
54 cd08352 Glo_EDI_BRP_like_1 Thi 98.9 6.5E-09 1.4E-13 61.8 6.3 52 6-63 72-124 (125)
55 cd09014 BphC-JF8_C_like C-term 98.9 5.7E-09 1.2E-13 68.2 6.4 58 5-65 68-127 (166)
56 cd07246 Glo_EDI_BRP_like_8 Thi 98.9 1.2E-08 2.6E-13 60.9 6.6 54 5-64 67-121 (122)
57 cd08359 Glo_EDI_BRP_like_22 Th 98.9 1.1E-08 2.5E-13 61.4 6.5 51 8-64 68-119 (119)
58 cd07235 MRD Mitomycin C resist 98.9 9.6E-09 2.1E-13 62.1 6.0 53 8-63 68-121 (122)
59 PF00903 Glyoxalase: Glyoxalas 98.8 1.5E-08 3.2E-13 60.1 6.4 53 7-62 74-128 (128)
60 KOG2944 Glyoxalase [Carbohydra 98.8 1.2E-08 2.5E-13 69.5 6.6 54 6-66 115-169 (170)
61 TIGR02295 HpaD 3,4-dihydroxyph 98.8 1.1E-08 2.5E-13 70.6 6.6 56 6-65 60-115 (294)
62 TIGR03213 23dbph12diox 2,3-dih 98.8 1.4E-08 3E-13 70.5 6.8 58 4-64 204-262 (286)
63 cd08350 BLMT_like BLMT, a bleo 98.8 1.2E-08 2.6E-13 62.1 5.7 46 20-65 66-119 (120)
64 TIGR03081 metmalonyl_epim meth 98.8 1.5E-08 3.3E-13 61.0 5.6 52 6-63 72-127 (128)
65 cd07251 Glo_EDI_BRP_like_10 Th 98.8 3.1E-08 6.7E-13 59.0 6.6 45 20-64 75-120 (121)
66 cd08355 Glo_EDI_BRP_like_14 Th 98.8 5.6E-08 1.2E-12 58.8 7.3 54 6-65 68-122 (122)
67 cd08349 BLMA_like Bleomycin bi 98.8 2.5E-08 5.5E-13 58.7 5.6 50 8-63 60-111 (112)
68 PLN02300 lactoylglutathione ly 98.8 3.4E-08 7.3E-13 69.2 7.1 55 6-66 93-149 (286)
69 TIGR03211 catechol_2_3 catecho 98.7 4.3E-08 9.3E-13 68.3 7.2 59 5-66 59-119 (303)
70 cd07264 Glo_EDI_BRP_like_15 Th 98.7 5.2E-08 1.1E-12 58.6 6.7 51 8-65 73-125 (125)
71 cd06587 Glo_EDI_BRP_like This 98.7 4.3E-08 9.4E-13 55.7 5.7 52 5-62 60-112 (112)
72 cd08356 Glo_EDI_BRP_like_17 Th 98.7 4.5E-08 9.7E-13 59.7 5.6 44 20-63 63-112 (113)
73 TIGR02295 HpaD 3,4-dihydroxyph 98.7 4.2E-08 9.2E-13 67.8 6.1 58 5-65 195-256 (294)
74 TIGR03213 23dbph12diox 2,3-dih 98.7 7.5E-08 1.6E-12 66.9 6.5 57 6-65 58-118 (286)
75 cd07249 MMCE Methylmalonyl-CoA 98.6 2.3E-07 5E-12 55.5 6.1 53 5-63 71-127 (128)
76 cd08358 Glo_EDI_BRP_like_21 Th 98.6 1.8E-07 3.9E-12 60.2 5.5 44 8-63 82-125 (127)
77 PLN02300 lactoylglutathione ly 98.3 2.5E-06 5.3E-11 59.8 7.3 55 5-65 222-278 (286)
78 COG2514 Predicted ring-cleavag 98.2 2.7E-06 5.9E-11 61.4 4.9 56 6-66 71-127 (265)
79 COG3565 Predicted dioxygenase 97.7 8.1E-05 1.8E-09 49.0 4.2 54 7-64 70-128 (138)
80 COG0346 GloA Lactoylglutathion 97.4 9.9E-05 2.1E-09 42.5 1.9 53 7-63 85-137 (138)
81 cd06588 PhnB_like Escherichia 97.0 0.0022 4.7E-08 39.7 5.2 43 20-63 85-128 (128)
82 PF13670 PepSY_2: Peptidase pr 97.0 0.0059 1.3E-07 36.0 6.7 45 22-66 30-74 (83)
83 COG3607 Predicted lactoylgluta 96.6 0.0031 6.7E-08 41.7 3.7 49 17-65 79-127 (133)
84 COG3324 Predicted enzyme relat 96.2 0.031 6.6E-07 36.5 6.6 55 8-66 71-126 (127)
85 PF13669 Glyoxalase_4: Glyoxal 96.2 0.054 1.2E-06 32.5 7.2 53 9-67 2-57 (109)
86 PF13669 Glyoxalase_4: Glyoxal 96.1 0.017 3.7E-07 34.7 4.9 34 5-44 67-101 (109)
87 cd07250 HPPD_C_like C-terminal 94.1 0.082 1.8E-06 35.4 3.7 29 5-39 82-110 (191)
88 COG2764 PhnB Uncharacterized p 92.4 0.71 1.5E-05 30.3 6.0 44 23-67 88-133 (136)
89 PF14133 DUF4300: Domain of un 91.3 0.39 8.5E-06 34.5 4.2 40 20-62 147-186 (250)
90 TIGR01263 4HPPD 4-hydroxypheny 90.1 0.34 7.4E-06 35.1 3.1 29 5-39 237-265 (353)
91 cd04895 ACT_ACR_1 ACT domain-c 89.7 1.5 3.3E-05 25.8 5.1 49 13-61 5-56 (72)
92 PF03975 CheD: CheD chemotacti 89.3 1.3 2.9E-05 27.7 5.0 42 19-60 62-103 (114)
93 PRK01037 trmD tRNA (guanine-N( 88.6 0.67 1.5E-05 35.0 3.7 47 18-66 309-355 (357)
94 COG3185 4-hydroxyphenylpyruvat 87.3 0.6 1.3E-05 35.4 2.8 28 6-39 245-272 (363)
95 PLN02875 4-hydroxyphenylpyruva 86.2 0.81 1.8E-05 34.8 3.0 29 5-39 261-293 (398)
96 PRK13494 chemoreceptor glutami 86.1 2.1 4.6E-05 28.9 4.7 41 19-59 112-152 (163)
97 cd07250 HPPD_C_like C-terminal 85.7 6 0.00013 26.4 6.8 57 6-66 3-64 (191)
98 PRK13490 chemoreceptor glutami 85.1 2.6 5.6E-05 28.3 4.7 41 19-59 110-150 (162)
99 PRK13495 chemoreceptor glutami 84.2 2.9 6.4E-05 28.0 4.7 42 19-60 103-144 (159)
100 PRK13498 chemoreceptor glutami 83.5 3.3 7.1E-05 28.0 4.7 41 19-59 113-153 (167)
101 cd08353 Glo_EDI_BRP_like_7 Thi 83.1 8 0.00017 23.4 7.1 54 6-65 3-69 (142)
102 PRK14707 hypothetical protein; 82.5 4 8.7E-05 37.6 5.9 57 10-66 2345-2407(2710)
103 TIGR03645 glyox_marine lactoyl 82.4 10 0.00023 24.2 7.2 56 5-66 3-78 (162)
104 PRK13497 chemoreceptor glutami 82.2 4.1 8.8E-05 28.0 4.8 42 19-60 110-151 (184)
105 PRK13488 chemoreceptor glutami 81.9 4.2 9.2E-05 27.1 4.8 41 19-59 105-145 (157)
106 PRK13487 chemoreceptor glutami 81.8 4.1 8.9E-05 28.4 4.8 41 19-59 125-165 (201)
107 PRK13491 chemoreceptor glutami 81.3 4.3 9.3E-05 28.4 4.8 43 18-60 112-154 (199)
108 cd07263 Glo_EDI_BRP_like_16 Th 80.5 8.3 0.00018 21.8 7.3 43 21-63 7-50 (119)
109 PRK13493 chemoreceptor glutami 80.2 4.8 0.0001 28.3 4.7 41 19-59 137-177 (213)
110 cd04904 ACT_AAAH ACT domain of 79.8 5.3 0.00011 22.8 4.1 44 12-57 5-51 (74)
111 cd03012 TlpA_like_DipZ_like Tl 78.0 13 0.00028 22.5 6.5 57 7-63 57-122 (126)
112 PF00379 Chitin_bind_4: Insect 77.7 5.3 0.00012 21.5 3.5 21 48-68 29-49 (52)
113 cd07249 MMCE Methylmalonyl-CoA 77.6 11 0.00025 21.7 6.1 53 7-66 1-56 (128)
114 PHA02754 hypothetical protein; 77.3 7.3 0.00016 22.8 4.2 44 21-64 18-61 (67)
115 PF13468 Glyoxalase_3: Glyoxal 77.1 8.6 0.00019 24.8 5.0 53 7-66 1-55 (175)
116 TIGR01263 4HPPD 4-hydroxypheny 75.4 19 0.0004 26.1 6.8 29 5-39 71-99 (353)
117 PRK13489 chemoreceptor glutami 75.2 8.1 0.00018 27.6 4.8 41 19-59 123-163 (233)
118 TIGR03828 pfkB 1-phosphofructo 74.6 15 0.00032 25.1 5.8 41 24-64 64-104 (304)
119 cd04897 ACT_ACR_3 ACT domain-c 73.9 15 0.00033 21.7 5.0 41 21-61 13-56 (75)
120 PRK10148 hypothetical protein; 73.7 11 0.00023 24.4 4.7 45 21-66 97-142 (147)
121 cd08352 Glo_EDI_BRP_like_1 Thi 73.3 15 0.00032 21.0 7.7 53 6-64 3-57 (125)
122 COG1871 CheD Chemotaxis protei 73.2 8.9 0.00019 26.3 4.4 44 17-60 110-153 (164)
123 PF12687 DUF3801: Protein of u 72.1 16 0.00035 25.2 5.6 36 22-57 43-80 (204)
124 TIGR03168 1-PFK hexose kinase, 72.1 18 0.0004 24.8 5.9 41 24-64 64-104 (303)
125 PF14907 NTP_transf_5: Unchara 72.0 12 0.00025 25.1 4.8 42 20-65 103-144 (249)
126 PF14930 Qn_am_d_aII: Quinohem 70.7 8 0.00017 24.7 3.5 28 34-61 59-87 (108)
127 PRK13730 conjugal transfer pil 69.8 7.5 0.00016 27.6 3.5 38 5-46 91-128 (212)
128 PF09673 TrbC_Ftype: Type-F co 68.6 9.1 0.0002 23.9 3.4 35 8-46 2-36 (113)
129 KOG2943 Predicted glyoxalase [ 68.4 19 0.00041 26.6 5.4 56 7-63 211-268 (299)
130 TIGR02742 TrbC_Ftype type-F co 68.2 7.1 0.00015 25.4 3.0 36 7-46 2-37 (130)
131 PF07063 DUF1338: Domain of un 68.1 17 0.00037 26.7 5.2 56 5-60 183-252 (302)
132 cd01939 Ketohexokinase Ketohex 67.5 35 0.00077 23.3 6.5 41 24-64 66-108 (290)
133 TIGR00070 hisG ATP phosphoribo 67.3 10 0.00023 25.9 3.8 38 21-64 9-46 (182)
134 cd01944 YegV_kinase_like YegV- 66.7 20 0.00043 24.4 5.1 42 24-65 65-107 (289)
135 PF00585 Thr_dehydrat_C: C-ter 66.4 8.6 0.00019 23.1 2.9 29 8-39 52-80 (91)
136 PF06923 GutM: Glucitol operon 66.1 30 0.00065 21.7 5.6 43 20-63 23-68 (109)
137 PF14085 DUF4265: Domain of un 65.1 6.8 0.00015 24.6 2.4 33 3-35 82-114 (117)
138 cd04929 ACT_TPH ACT domain of 63.6 25 0.00053 20.4 4.4 37 22-58 13-52 (74)
139 PF09633 DUF2023: Protein of u 63.4 22 0.00048 22.6 4.4 35 20-55 24-58 (101)
140 PHA02087 hypothetical protein 62.9 7.8 0.00017 23.5 2.2 19 45-63 42-60 (83)
141 COG1393 ArsC Arsenate reductas 61.9 15 0.00031 23.3 3.5 24 19-42 10-33 (117)
142 TIGR01689 EcbF-BcbF capsule bi 60.6 11 0.00024 24.1 2.8 33 22-54 65-99 (126)
143 PF14090 HTH_39: Helix-turn-he 60.0 30 0.00065 19.6 4.6 24 18-41 25-48 (70)
144 cd04886 ACT_ThrD-II-like C-ter 59.4 14 0.0003 19.4 2.7 20 19-38 53-72 (73)
145 cd04931 ACT_PAH ACT domain of 59.3 30 0.00065 20.9 4.4 46 11-58 18-66 (90)
146 PF03738 GSP_synth: Glutathion 59.2 16 0.00035 21.9 3.2 45 21-65 15-60 (97)
147 KOG2943 Predicted glyoxalase [ 59.0 30 0.00066 25.6 5.1 20 45-64 123-142 (299)
148 PF15067 FAM124: FAM124 family 59.0 5.3 0.00012 28.8 1.2 12 51-62 224-235 (236)
149 cd01164 FruK_PfkB_like 1-phosp 58.8 49 0.0011 22.5 5.9 40 24-63 65-104 (289)
150 cd07233 Glyoxalase_I Glyoxalas 58.6 33 0.00071 19.6 7.2 51 8-64 2-57 (121)
151 cd04885 ACT_ThrD-I Tandem C-te 57.8 15 0.00032 20.3 2.7 20 19-38 48-67 (68)
152 PF13986 DUF4224: Domain of un 57.5 15 0.00033 19.8 2.6 24 16-39 10-33 (47)
153 cd01940 Fructoselysine_kinase_ 56.9 34 0.00075 22.8 4.8 37 24-60 52-88 (264)
154 TIGR01616 nitro_assoc nitrogen 56.2 16 0.00035 23.3 3.0 24 19-42 10-33 (126)
155 cd03036 ArsC_like Arsenate Red 56.2 16 0.00035 22.3 2.9 25 19-43 8-32 (111)
156 cd04883 ACT_AcuB C-terminal AC 55.8 26 0.00055 18.9 3.4 29 6-38 41-69 (72)
157 PF09259 Fve: Fungal immunomod 55.4 16 0.00034 23.3 2.8 23 41-63 84-107 (111)
158 COG3349 Uncharacterized conser 55.0 29 0.00063 27.3 4.7 44 18-62 8-52 (485)
159 cd03033 ArsC_15kD Arsenate Red 54.2 14 0.0003 23.1 2.4 24 19-42 9-32 (113)
160 PRK10853 putative reductase; P 54.2 17 0.00036 22.9 2.7 24 19-42 9-32 (118)
161 PF11823 DUF3343: Protein of u 53.7 15 0.00034 20.8 2.4 25 20-44 11-35 (73)
162 PF07409 GP46: Phage protein G 53.6 57 0.0012 20.8 5.6 44 23-66 66-114 (116)
163 PRK09169 hypothetical protein; 53.4 36 0.00078 31.7 5.4 57 10-66 1954-2017(2316)
164 COG2077 Tpx Peroxiredoxin [Pos 52.3 38 0.00081 23.1 4.3 35 27-61 111-145 (158)
165 COG3760 Uncharacterized conser 52.1 41 0.00088 23.1 4.5 40 24-63 6-61 (164)
166 PF09587 PGA_cap: Bacterial ca 51.9 18 0.00039 24.8 2.8 45 19-63 90-134 (250)
167 cd04907 ACT_ThrD-I_2 Second of 51.7 32 0.00069 20.2 3.6 27 9-39 44-70 (81)
168 cd03034 ArsC_ArsC Arsenate Red 51.6 24 0.00053 21.6 3.2 24 19-42 8-31 (112)
169 PRK12559 transcriptional regul 51.5 20 0.00044 22.8 2.9 24 19-42 9-32 (131)
170 cd03035 ArsC_Yffb Arsenate Red 51.3 19 0.00042 22.0 2.7 24 19-42 8-31 (105)
171 PF00462 Glutaredoxin: Glutare 50.7 27 0.00058 18.4 2.9 25 19-43 8-32 (60)
172 PF14506 CppA_N: CppA N-termin 50.6 70 0.0015 21.0 6.3 52 7-66 64-115 (125)
173 PF05036 SPOR: Sporulation rel 50.2 29 0.00062 18.7 3.1 43 10-52 5-48 (76)
174 PRK05265 pyridoxine 5'-phospha 50.0 21 0.00046 25.7 3.0 27 18-44 110-136 (239)
175 PRK13344 spxA transcriptional 49.7 25 0.00054 22.4 3.1 25 19-43 9-33 (132)
176 PF05301 Mec-17: Touch recepto 49.6 21 0.00045 23.3 2.7 19 45-63 26-44 (120)
177 PF01910 DUF77: Domain of unkn 49.5 27 0.00059 21.1 3.1 34 7-40 3-36 (92)
178 PRK10329 glutaredoxin-like pro 49.4 25 0.00054 20.4 2.8 23 22-44 13-35 (81)
179 cd01773 Faf1_like1_UBX Faf1 ik 49.1 41 0.00088 20.3 3.8 24 44-67 2-25 (82)
180 PRK10294 6-phosphofructokinase 48.8 81 0.0018 21.8 5.8 41 24-64 67-108 (309)
181 PF10922 DUF2745: Protein of u 48.7 47 0.001 20.5 4.0 41 20-60 9-53 (85)
182 PRK01655 spxA transcriptional 48.7 23 0.0005 22.4 2.8 25 19-43 9-33 (131)
183 PF15499 Peptidase_C98: Ubiqui 48.5 44 0.00096 24.6 4.5 15 49-63 235-249 (275)
184 cd04930 ACT_TH ACT domain of t 48.2 45 0.00099 20.9 4.1 37 22-58 54-93 (115)
185 cd03030 GRX_SH3BGR Glutaredoxi 48.1 44 0.00096 20.2 3.9 18 26-43 22-39 (92)
186 smart00497 IENR1 Intron encode 47.9 21 0.00045 18.5 2.1 14 48-61 2-15 (53)
187 PLN03042 Lactoylglutathione ly 47.9 84 0.0018 21.1 8.1 43 5-53 26-70 (185)
188 cd07381 MPP_CapA CapA and rela 47.9 19 0.00042 24.3 2.5 44 20-63 93-136 (239)
189 TIGR00116 tsf translation elon 47.8 22 0.00048 26.0 2.9 45 21-65 31-78 (290)
190 cd03032 ArsC_Spx Arsenate Redu 47.1 31 0.00067 21.1 3.1 24 19-42 9-32 (115)
191 PF03960 ArsC: ArsC family; I 47.0 27 0.00058 21.1 2.8 25 19-43 5-29 (110)
192 cd00003 PNPsynthase Pyridoxine 46.9 25 0.00055 25.2 3.0 27 18-44 107-133 (234)
193 PRK14581 hmsF outer membrane N 46.9 29 0.00062 28.3 3.6 37 20-65 333-371 (672)
194 PF11432 DUF3197: Protein of u 46.4 3.5 7.5E-05 26.7 -1.3 34 18-51 57-90 (113)
195 COG1834 N-Dimethylarginine dim 46.4 32 0.00069 25.1 3.5 34 23-56 40-73 (267)
196 TIGR00014 arsC arsenate reduct 46.2 34 0.00073 21.0 3.2 24 19-42 8-31 (114)
197 TIGR00559 pdxJ pyridoxine 5'-p 46.2 28 0.0006 25.1 3.1 26 19-44 108-133 (237)
198 cd01942 ribokinase_group_A Rib 46.1 82 0.0018 21.1 5.3 39 24-63 66-107 (279)
199 COG0264 Tsf Translation elonga 45.8 23 0.0005 26.3 2.7 44 21-65 32-81 (296)
200 cd04906 ACT_ThrD-I_1 First of 45.7 19 0.00042 20.9 2.0 20 20-39 52-71 (85)
201 PF07494 Reg_prop: Two compone 45.6 20 0.00043 16.4 1.6 12 49-60 8-19 (24)
202 PLN02875 4-hydroxyphenylpyruva 45.6 51 0.0011 25.2 4.6 55 6-66 180-242 (398)
203 PF09383 NIL: NIL domain; Int 45.6 26 0.00056 19.7 2.5 32 6-39 44-75 (76)
204 PF11267 DUF3067: Protein of u 45.5 9.3 0.0002 24.1 0.6 25 11-35 40-64 (99)
205 PHA02097 hypothetical protein 45.5 19 0.00042 20.6 1.8 12 52-63 46-57 (59)
206 PF08448 PAS_4: PAS fold; Int 45.2 20 0.00043 19.8 1.9 16 50-65 8-23 (110)
207 cd06592 GH31_glucosidase_KIAA1 45.2 43 0.00094 23.9 4.0 39 19-57 68-116 (303)
208 cd03028 GRX_PICOT_like Glutare 44.9 40 0.00086 19.6 3.3 33 10-42 13-45 (90)
209 PRK10824 glutaredoxin-4; Provi 44.8 61 0.0013 20.5 4.3 33 10-42 20-52 (115)
210 TIGR02194 GlrX_NrdH Glutaredox 44.5 36 0.00078 18.7 2.9 24 20-43 9-32 (72)
211 PRK12332 tsf elongation factor 44.4 26 0.00057 24.2 2.7 45 21-65 31-80 (198)
212 PF03740 PdxJ: Pyridoxal phosp 44.0 32 0.0007 24.7 3.2 26 19-44 109-134 (239)
213 PF09153 DUF1938: Domain of un 43.8 43 0.00093 20.7 3.3 37 5-41 22-59 (86)
214 cd02977 ArsC_family Arsenate R 43.8 37 0.00079 20.2 3.0 25 19-43 8-32 (105)
215 smart00854 PGA_cap Bacterial c 43.7 23 0.00051 24.1 2.4 45 19-63 88-132 (239)
216 PRK09437 bcp thioredoxin-depen 43.6 78 0.0017 19.6 5.5 17 48-64 121-137 (154)
217 cd03027 GRX_DEP Glutaredoxin ( 43.6 34 0.00075 18.7 2.7 24 19-42 10-33 (73)
218 PF03607 DCX: Doublecortin; I 43.2 39 0.00085 18.7 2.9 33 19-60 7-39 (60)
219 COG3444 Phosphotransferase sys 43.1 33 0.00071 23.3 3.0 23 24-46 127-149 (159)
220 PF06953 ArsD: Arsenical resis 43.1 31 0.00067 22.2 2.8 27 16-42 22-48 (123)
221 cd04896 ACT_ACR-like_3 ACT dom 43.1 69 0.0015 18.8 4.6 45 16-60 7-55 (75)
222 cd01168 adenosine_kinase Adeno 43.0 53 0.0011 22.7 4.1 39 24-62 85-124 (312)
223 cd01174 ribokinase Ribokinase 42.5 1E+02 0.0023 20.7 6.0 41 24-65 66-109 (292)
224 COG4445 MiaE Hydroxylase for s 42.5 15 0.00032 25.7 1.3 25 19-43 71-95 (203)
225 COG0854 PdxJ Pyridoxal phospha 42.3 34 0.00075 24.8 3.1 28 17-44 107-134 (243)
226 PHA01735 hypothetical protein 42.2 20 0.00043 21.6 1.6 21 18-38 30-50 (76)
227 PRK10026 arsenate reductase; P 42.1 30 0.00066 22.7 2.6 24 19-42 11-34 (141)
228 PF00578 AhpC-TSA: AhpC/TSA fa 41.9 70 0.0015 18.6 4.6 15 46-60 108-122 (124)
229 PF15590 Imm15: Immunity prote 41.1 13 0.00028 22.1 0.7 21 47-67 24-45 (69)
230 PLN02245 ATP phosphoribosyl tr 40.9 47 0.001 25.6 3.8 38 23-65 81-118 (403)
231 PF13756 Stimulus_sens_1: Stim 40.8 26 0.00056 21.8 2.1 14 47-60 18-31 (112)
232 PRK14707 hypothetical protein; 40.8 1.1E+02 0.0024 29.0 6.5 57 10-66 2576-2638(2710)
233 PRK09377 tsf elongation factor 40.7 25 0.00053 25.8 2.2 45 21-65 32-79 (290)
234 cd01941 YeiC_kinase_like YeiC- 40.5 94 0.002 20.9 5.0 36 25-61 66-103 (288)
235 PF12122 DUF3582: Protein of u 40.4 42 0.00092 20.8 3.0 32 24-56 14-45 (101)
236 cd04914 ACT_AKi-DapG-BS_1 ACT 40.3 46 0.001 18.5 2.9 27 9-39 39-65 (67)
237 cd06591 GH31_xylosidase_XylS X 40.2 76 0.0017 22.8 4.7 41 19-59 64-114 (319)
238 cd03765 proteasome_beta_bacter 40.1 27 0.00059 24.5 2.3 15 48-62 124-138 (236)
239 cd01906 proteasome_protease_Hs 40.1 31 0.00067 21.9 2.4 20 46-65 110-129 (182)
240 PF00227 Proteasome: Proteasom 40.1 50 0.0011 21.1 3.4 20 43-62 114-133 (190)
241 PRK11657 dsbG disulfide isomer 39.6 93 0.002 21.7 4.9 40 21-60 21-70 (251)
242 cd04882 ACT_Bt0572_2 C-termina 39.4 35 0.00076 17.8 2.2 15 23-37 50-64 (65)
243 cd02966 TlpA_like_family TlpA- 39.4 67 0.0015 17.6 6.3 53 5-61 51-112 (116)
244 cd04880 ACT_AAAH-PDT-like ACT 39.4 68 0.0015 17.6 4.7 45 11-57 3-50 (75)
245 PHA02117 glutathionylspermidin 39.3 91 0.002 23.8 5.2 58 8-65 177-237 (397)
246 PRK03996 proteasome subunit al 39.3 31 0.00066 23.6 2.4 19 47-65 147-165 (241)
247 PLN02379 pfkB-type carbohydrat 39.2 44 0.00096 24.4 3.4 36 24-60 117-154 (367)
248 cd06597 GH31_transferase_CtsY 39.0 83 0.0018 23.0 4.8 41 19-59 83-140 (340)
249 TIGR01617 arsC_related transcr 39.0 45 0.00097 20.4 2.9 24 19-42 8-31 (117)
250 TIGR03633 arc_protsome_A prote 38.9 32 0.00069 23.2 2.5 20 46-65 139-158 (224)
251 PF08285 DPM3: Dolichol-phosph 38.8 21 0.00046 21.9 1.4 17 21-37 75-91 (91)
252 PTZ00490 Ferredoxin superfamil 38.7 1E+02 0.0022 20.3 4.7 27 40-66 28-54 (143)
253 cd01912 proteasome_beta protea 38.4 34 0.00073 22.1 2.4 20 46-65 108-127 (189)
254 PRK10658 putative alpha-glucos 38.2 1.1E+02 0.0024 24.8 5.6 44 20-63 324-377 (665)
255 TIGR01643 YD_repeat_2x YD repe 38.1 47 0.001 16.4 2.5 20 46-65 15-34 (42)
256 PRK13599 putative peroxiredoxi 38.1 1.3E+02 0.0028 20.5 5.6 19 46-64 118-136 (215)
257 TIGR00365 monothiol glutaredox 38.0 62 0.0014 19.3 3.4 33 10-42 17-49 (97)
258 cd01911 proteasome_alpha prote 37.9 37 0.00081 22.6 2.6 19 47-65 139-157 (209)
259 COG0695 GrxC Glutaredoxin and 37.8 54 0.0012 18.9 3.0 24 20-43 11-34 (80)
260 cd03418 GRX_GRXb_1_3_like Glut 37.8 55 0.0012 17.6 3.0 25 19-43 9-33 (75)
261 COG0036 Rpe Pentose-5-phosphat 37.6 72 0.0016 22.7 4.1 37 8-47 86-122 (220)
262 cd00114 LIGANc NAD+ dependent 37.6 29 0.00064 25.3 2.2 59 6-64 210-283 (307)
263 PHA00450 host dGTPase inhibito 37.3 97 0.0021 19.1 4.1 44 20-63 9-56 (85)
264 PF08923 MAPKK1_Int: Mitogen-a 37.3 36 0.00078 21.7 2.4 17 45-61 15-31 (119)
265 PRK11142 ribokinase; Provision 37.3 94 0.002 21.2 4.6 40 24-64 69-111 (306)
266 PF00834 Ribul_P_3_epim: Ribul 37.2 28 0.00061 23.8 2.0 35 9-46 83-117 (201)
267 cd03756 proteasome_alpha_arche 36.9 42 0.0009 22.4 2.8 19 47-65 139-157 (211)
268 cd03754 proteasome_alpha_type_ 36.8 43 0.00093 22.6 2.8 20 46-65 140-159 (215)
269 smart00166 UBX Domain present 36.8 82 0.0018 17.9 3.7 22 46-67 3-24 (80)
270 COG1501 Alpha-glucosidases, fa 36.6 89 0.0019 25.9 5.0 48 19-66 319-376 (772)
271 TIGR00854 pts-sorbose PTS syst 36.3 51 0.0011 21.6 3.1 22 24-45 126-147 (151)
272 PRK11899 prephenate dehydratas 36.3 70 0.0015 23.1 4.0 39 21-59 206-247 (279)
273 cd02968 SCO SCO (an acronym fo 35.8 98 0.0021 18.5 4.1 14 48-61 125-138 (142)
274 TIGR03634 arc_protsome_B prote 35.8 37 0.0008 22.0 2.3 17 48-64 110-126 (185)
275 cd04908 ACT_Bt0572_1 N-termina 35.7 56 0.0012 17.6 2.7 18 21-38 48-65 (66)
276 PRK10629 EnvZ/OmpR regulon mod 35.6 68 0.0015 20.6 3.5 34 21-55 50-83 (127)
277 COG4531 ZnuA ABC-type Zn2+ tra 35.6 45 0.00098 25.0 2.9 58 6-63 230-297 (318)
278 COG1654 BirA Biotin operon rep 35.6 48 0.001 19.8 2.6 17 23-39 36-52 (79)
279 PF10411 DsbC_N: Disulfide bon 35.5 79 0.0017 17.3 4.0 32 28-59 3-44 (57)
280 KOG3111 D-ribulose-5-phosphate 35.4 27 0.00058 25.0 1.7 40 8-50 89-128 (224)
281 PF03432 Relaxase: Relaxase/Mo 34.8 1.1E+02 0.0025 20.2 4.6 19 20-38 184-202 (242)
282 PF01835 A2M_N: MG2 domain; I 34.6 28 0.0006 20.3 1.4 18 45-62 35-52 (99)
283 PF11814 DUF3335: Peptidase_C3 34.4 83 0.0018 22.2 4.0 11 47-57 157-167 (207)
284 PF03830 PTSIIB_sorb: PTS syst 34.4 41 0.00089 22.0 2.4 23 24-46 126-148 (151)
285 PRK10907 intramembrane serine 34.4 62 0.0013 23.3 3.5 33 21-56 11-43 (276)
286 COG3867 Arabinogalactan endo-1 34.4 60 0.0013 24.9 3.4 29 25-59 67-95 (403)
287 PF11141 DUF2914: Protein of u 34.1 92 0.002 17.6 3.6 20 44-63 42-61 (66)
288 cd03029 GRX_hybridPRX5 Glutare 34.1 53 0.0011 17.9 2.5 25 19-43 10-34 (72)
289 cd02969 PRX_like1 Peroxiredoxi 33.9 1.2E+02 0.0027 19.1 5.9 57 6-62 58-125 (171)
290 PF13721 SecD-TM1: SecD export 33.9 65 0.0014 19.8 3.1 36 20-56 45-80 (101)
291 cd06603 GH31_GANC_GANAB_alpha 33.8 1.7E+02 0.0037 21.1 5.7 43 19-61 62-116 (339)
292 KOG3405 RNA polymerase subunit 33.8 59 0.0013 21.6 3.0 26 21-46 97-123 (136)
293 PRK03094 hypothetical protein; 33.7 39 0.00085 20.5 2.0 19 21-39 8-26 (80)
294 PRK04247 hypothetical protein; 33.7 1.5E+02 0.0033 21.2 5.3 41 20-60 133-174 (238)
295 cd04909 ACT_PDH-BS C-terminal 33.6 34 0.00073 18.4 1.6 16 22-37 54-69 (69)
296 PRK03298 hypothetical protein; 33.6 1.1E+02 0.0024 21.9 4.6 43 20-62 108-151 (224)
297 PRK10638 glutaredoxin 3; Provi 33.5 60 0.0013 18.3 2.7 24 20-43 12-35 (83)
298 cd03749 proteasome_alpha_type_ 33.3 51 0.0011 22.1 2.7 17 48-64 137-153 (211)
299 cd03752 proteasome_alpha_type_ 33.3 53 0.0012 22.0 2.8 19 47-65 142-160 (213)
300 PHA00159 endonuclease I 33.2 1E+02 0.0022 20.8 4.1 42 22-63 18-67 (148)
301 PF11191 DUF2782: Protein of u 33.1 58 0.0013 19.9 2.8 32 26-58 50-81 (105)
302 PLN02367 lactoylglutathione ly 33.0 1.8E+02 0.0039 20.7 7.8 42 6-53 75-118 (233)
303 PF02274 Amidinotransf: Amidin 32.7 11 0.00023 26.1 -0.7 35 21-55 32-68 (281)
304 PRK13583 hisG ATP phosphoribos 32.4 97 0.0021 22.0 4.1 39 23-65 14-52 (228)
305 cd04495 BRCA2DBD_OB3 BRCA2DBD_ 32.4 1E+02 0.0023 19.5 3.8 33 34-66 4-36 (100)
306 COG3266 DamX Uncharacterized p 32.2 67 0.0014 23.9 3.3 39 5-43 207-245 (292)
307 cd03751 proteasome_alpha_type_ 32.1 57 0.0012 22.1 2.8 19 47-65 141-159 (212)
308 TIGR02152 D_ribokin_bact ribok 32.0 1.6E+02 0.0035 19.9 6.4 39 24-63 61-102 (293)
309 TIGR02181 GRX_bact Glutaredoxi 31.9 64 0.0014 17.7 2.6 25 19-43 8-32 (79)
310 cd06593 GH31_xylosidase_YicI Y 31.9 1.2E+02 0.0026 21.4 4.5 50 11-61 57-116 (308)
311 PF03614 Flag1_repress: Repres 31.9 64 0.0014 22.1 3.0 46 22-67 108-162 (165)
312 cd03755 proteasome_alpha_type_ 31.9 48 0.001 22.1 2.4 19 46-64 138-156 (207)
313 PRK15431 ferrous iron transpor 31.9 33 0.00071 20.8 1.4 23 12-38 26-48 (78)
314 PF02630 SCO1-SenC: SCO1/SenC; 31.6 1.5E+02 0.0033 19.3 4.9 34 30-63 131-171 (174)
315 PF12683 DUF3798: Protein of u 31.4 78 0.0017 23.3 3.6 39 6-44 133-173 (275)
316 PRK11425 PTS system N-acetylga 31.3 68 0.0015 21.2 3.0 23 24-46 127-149 (157)
317 cd04926 ACT_ACR_4 C-terminal 31.3 99 0.0021 17.1 5.5 43 18-60 10-55 (72)
318 cd03008 TryX_like_RdCVF Trypar 31.2 1.4E+02 0.0031 19.3 4.5 50 7-61 66-127 (146)
319 PRK14582 pgaB outer membrane N 31.1 62 0.0013 26.4 3.3 32 19-59 332-363 (671)
320 TIGR03691 20S_bact_alpha prote 31.1 40 0.00087 23.3 2.0 16 48-63 134-149 (228)
321 PRK10234 DNA-binding transcrip 31.0 1.5E+02 0.0032 19.1 5.3 44 20-63 24-69 (118)
322 TIGR02190 GlrX-dom Glutaredoxi 30.9 61 0.0013 18.2 2.4 24 19-42 17-40 (79)
323 PF00070 Pyr_redox: Pyridine n 30.8 88 0.0019 17.4 3.1 18 24-41 44-61 (80)
324 cd06599 GH31_glycosidase_Aec37 30.8 1E+02 0.0022 22.1 4.1 46 12-58 65-120 (317)
325 COG4747 ACT domain-containing 30.8 1.1E+02 0.0023 20.5 3.8 35 22-56 16-53 (142)
326 PF00294 PfkB: pfkB family car 30.6 1.3E+02 0.0028 20.2 4.4 41 24-64 66-108 (301)
327 COG0518 GuaA GMP synthase - Gl 30.6 68 0.0015 21.9 3.0 38 23-60 14-51 (198)
328 PRK01686 hisG ATP phosphoribos 30.4 1.1E+02 0.0025 21.3 4.2 41 21-65 12-52 (215)
329 COG2153 ElaA Predicted acyltra 30.4 38 0.00083 23.0 1.7 18 45-62 47-64 (155)
330 KOG0178 20S proteasome, regula 30.4 61 0.0013 23.5 2.8 14 45-58 142-155 (249)
331 PF14883 GHL13: Hypothetical g 30.4 84 0.0018 23.4 3.6 18 20-37 16-33 (294)
332 smart00557 IG_FLMN Filamin-typ 30.0 93 0.002 18.1 3.2 20 45-64 31-50 (93)
333 PF12123 Amidase02_C: N-acetyl 30.0 64 0.0014 17.5 2.3 18 21-38 27-44 (45)
334 cd03750 proteasome_alpha_type_ 30.0 64 0.0014 21.9 2.8 18 47-64 138-155 (227)
335 PRK09756 PTS system N-acetylga 29.9 75 0.0016 21.0 3.1 22 24-45 130-151 (158)
336 cd01167 bac_FRK Fructokinases 29.8 1.8E+02 0.0038 19.6 5.3 39 24-63 58-99 (295)
337 TIGR02198 rfaE_dom_I rfaE bifu 29.8 1.7E+02 0.0036 20.1 4.9 39 25-63 78-118 (315)
338 PRK03991 threonyl-tRNA synthet 29.7 1.3E+02 0.0028 24.1 4.8 44 20-63 94-169 (613)
339 PF03698 UPF0180: Uncharacteri 29.6 49 0.0011 19.9 2.0 19 22-40 9-27 (80)
340 PRK09513 fruK 1-phosphofructok 29.5 1.9E+02 0.0042 19.9 5.6 40 25-64 69-108 (312)
341 PF14827 Cache_3: Sensory doma 29.4 39 0.00084 20.5 1.5 16 45-60 37-52 (116)
342 PRK14457 ribosomal RNA large s 29.3 2.3E+02 0.005 21.0 5.8 40 26-65 51-95 (345)
343 PRK06704 RNA polymerase factor 29.3 68 0.0015 22.3 2.9 28 33-61 197-224 (228)
344 PF07848 PaaX: PaaX-like prote 28.9 35 0.00075 19.8 1.2 25 11-39 32-56 (70)
345 PLN02323 probable fructokinase 28.8 1.5E+02 0.0033 20.6 4.6 35 24-59 73-110 (330)
346 PF09286 Pro-kuma_activ: Pro-k 28.7 1.5E+02 0.0033 18.5 4.4 19 21-39 62-80 (143)
347 PF01963 TraB: TraB family; I 28.4 53 0.0012 22.0 2.2 23 17-39 236-258 (259)
348 cd00001 PTS_IIB_man PTS_IIB, P 28.3 85 0.0018 20.5 3.1 22 24-45 125-146 (151)
349 cd01172 RfaE_like RfaE encodes 28.2 1.9E+02 0.0042 19.5 5.0 39 24-63 69-109 (304)
350 PRK09732 hypothetical protein; 28.2 1.7E+02 0.0037 18.9 5.0 37 21-57 14-50 (134)
351 cd07910 MiaE MiaE tRNA-modifyi 27.9 39 0.00084 23.4 1.4 21 19-39 61-81 (180)
352 PF09413 DUF2007: Domain of un 27.9 84 0.0018 17.0 2.6 17 24-40 13-29 (67)
353 PF09299 Mu-transpos_C: Mu tra 27.8 84 0.0018 17.1 2.6 26 33-60 34-59 (62)
354 cd01948 EAL EAL domain. This d 27.6 36 0.00078 22.0 1.2 52 9-60 117-173 (240)
355 cd03763 proteasome_beta_type_7 27.5 63 0.0014 21.1 2.4 18 48-65 108-125 (189)
356 cd02066 GRX_family Glutaredoxi 27.4 89 0.0019 15.9 2.6 24 20-43 10-33 (72)
357 cd03041 GST_N_2GST_N GST_N fam 27.2 1E+02 0.0022 17.0 3.0 21 23-43 13-33 (77)
358 cd06602 GH31_MGAM_SI_GAA This 27.1 1.6E+02 0.0035 21.4 4.6 41 20-60 63-120 (339)
359 cd06594 GH31_glucosidase_YihQ 27.1 1.2E+02 0.0026 21.9 3.9 41 19-59 69-120 (317)
360 PRK09850 pseudouridine kinase; 27.0 1.8E+02 0.0038 20.2 4.7 35 24-59 70-107 (313)
361 PRK13191 putative peroxiredoxi 27.0 86 0.0019 21.4 3.0 20 46-65 123-142 (215)
362 cd01767 UBX UBX (ubiquitin reg 26.8 1.3E+02 0.0027 16.9 3.6 20 48-67 3-22 (77)
363 PF14310 Fn3-like: Fibronectin 26.7 51 0.0011 18.4 1.6 11 47-57 2-12 (71)
364 PRK15412 thiol:disulfide inter 26.7 1.9E+02 0.004 18.8 4.9 40 24-63 110-159 (185)
365 cd03753 proteasome_alpha_type_ 26.7 59 0.0013 21.7 2.2 19 47-65 143-161 (213)
366 PF06114 DUF955: Domain of unk 26.6 79 0.0017 18.0 2.5 35 31-65 2-36 (122)
367 PF06832 BiPBP_C: Penicillin-B 26.4 1.2E+02 0.0026 17.4 3.3 21 44-64 69-89 (89)
368 cd01770 p47_UBX p47-like ubiqu 26.4 1.4E+02 0.0031 17.3 3.6 22 46-67 3-24 (79)
369 PRK05579 bifunctional phosphop 26.3 2.1E+02 0.0046 21.6 5.2 40 23-62 332-377 (399)
370 PF06962 rRNA_methylase: Putat 26.3 86 0.0019 20.6 2.8 23 10-36 3-25 (140)
371 cd04336 YeaK YeaK is an unchar 26.2 1.7E+02 0.0037 18.2 6.1 40 24-63 2-59 (153)
372 PRK11898 prephenate dehydratas 26.1 1E+02 0.0022 22.0 3.4 37 22-58 210-249 (283)
373 PF11633 SUD-M: Single-strande 25.8 99 0.0022 20.7 3.0 30 23-53 45-74 (142)
374 PF08459 UvrC_HhH_N: UvrC Heli 25.8 1E+02 0.0022 20.5 3.1 45 19-63 88-134 (155)
375 PF14076 DUF4258: Domain of un 25.8 1.2E+02 0.0026 16.3 4.1 21 45-65 39-59 (73)
376 PF15121 TMEM71: TMEM71 protei 25.7 43 0.00093 22.6 1.3 10 50-59 76-85 (149)
377 PF05979 DUF896: Bacterial pro 25.7 23 0.0005 20.7 0.0 11 50-60 49-59 (65)
378 PF00989 PAS: PAS fold; Inter 25.7 61 0.0013 17.8 1.8 16 50-65 14-29 (113)
379 PRK10775 cell division protein 25.6 2.5E+02 0.0055 20.0 5.4 42 20-63 171-212 (276)
380 PF10023 DUF2265: Predicted am 25.5 65 0.0014 24.3 2.3 21 24-44 122-142 (337)
381 PF00885 DMRL_synthase: 6,7-di 25.5 1.2E+02 0.0026 19.7 3.4 22 23-44 22-46 (144)
382 cd03017 PRX_BCP Peroxiredoxin 25.4 1.6E+02 0.0034 17.5 5.2 16 48-63 111-126 (140)
383 smart00345 HTH_GNTR helix_turn 25.4 55 0.0012 16.6 1.5 17 20-36 34-50 (60)
384 cd03764 proteasome_beta_archea 25.4 76 0.0016 20.6 2.4 18 47-64 108-125 (188)
385 COG0450 AhpC Peroxiredoxin [Po 25.3 61 0.0013 22.7 2.0 17 46-62 123-139 (194)
386 PTZ00393 protein tyrosine phos 25.1 1.5E+02 0.0032 21.4 4.0 35 2-39 87-121 (241)
387 cd04899 ACT_ACR-UUR-like_2 C-t 25.1 1.2E+02 0.0026 16.0 4.8 39 21-59 12-53 (70)
388 cd03758 proteasome_beta_type_2 25.0 65 0.0014 21.3 2.1 19 46-64 111-129 (193)
389 TIGR02725 phenyl_P_gamma pheny 25.0 1.3E+02 0.0028 18.1 3.2 19 47-65 3-25 (84)
390 PTZ00056 glutathione peroxidas 25.0 2.2E+02 0.0047 19.0 4.8 15 49-63 147-161 (199)
391 cd03760 proteasome_beta_type_4 25.0 67 0.0014 21.2 2.1 19 46-64 113-131 (197)
392 PRK10622 pheA bifunctional cho 25.0 1.4E+02 0.003 22.5 4.1 37 22-58 310-349 (386)
393 COG0040 HisG ATP phosphoribosy 24.9 1.3E+02 0.0027 22.3 3.7 37 23-65 14-50 (290)
394 cd01902 Ntn_CGH Choloylglycine 24.9 2.5E+02 0.0055 20.0 5.2 47 17-64 107-156 (291)
395 PF02244 Propep_M14: Carboxype 24.8 1.3E+02 0.0029 16.5 3.4 26 10-39 36-61 (74)
396 cd06604 GH31_glucosidase_II_Ma 24.8 1.6E+02 0.0036 21.2 4.3 41 20-60 63-115 (339)
397 PLN02268 probable polyamine ox 24.6 67 0.0015 23.3 2.3 41 18-62 8-51 (435)
398 PF09012 FeoC: FeoC like trans 24.6 35 0.00077 19.0 0.7 21 20-40 28-48 (69)
399 PF02829 3H: 3H domain; Inter 24.6 46 0.001 20.6 1.2 21 16-36 77-97 (98)
400 PRK10382 alkyl hydroperoxide r 24.5 1E+02 0.0022 20.6 3.0 18 47-64 119-136 (187)
401 TIGR02540 gpx7 putative glutat 24.4 94 0.002 19.4 2.7 15 50-64 123-137 (153)
402 PTZ00189 60S ribosomal protein 24.3 1.2E+02 0.0026 20.7 3.3 42 23-65 112-153 (160)
403 PF13535 ATP-grasp_4: ATP-gras 24.3 58 0.0013 20.1 1.7 38 21-65 138-178 (184)
404 PF04577 DUF563: Protein of un 24.3 2E+02 0.0043 18.3 4.6 47 19-65 117-182 (206)
405 COG0524 RbsK Sugar kinases, ri 24.3 2.4E+02 0.0052 19.3 6.0 42 24-65 67-110 (311)
406 cd03079 GST_N_Metaxin2 GST_N f 24.2 1.5E+02 0.0033 17.1 3.4 18 25-42 22-39 (74)
407 PRK09434 aminoimidazole ribosi 24.1 2.3E+02 0.0049 19.4 4.7 37 24-60 58-96 (304)
408 PF01614 IclR: Bacterial trans 24.0 1.2E+02 0.0026 18.1 3.0 42 20-61 53-95 (129)
409 PRK06769 hypothetical protein; 24.0 79 0.0017 20.4 2.3 20 20-39 30-49 (173)
410 PF12404 DUF3663: Peptidase ; 23.9 86 0.0019 18.9 2.3 29 11-39 28-56 (77)
411 PF03793 PASTA: PASTA domain; 23.6 1.3E+02 0.0028 15.9 3.8 25 14-39 3-27 (63)
412 KOG0638 4-hydroxyphenylpyruvat 23.6 91 0.002 23.9 2.8 29 5-39 261-289 (381)
413 PF14258 DUF4350: Domain of un 23.6 1.4E+02 0.003 16.3 4.1 23 21-43 5-27 (70)
414 PRK13190 putative peroxiredoxi 23.6 1.3E+02 0.0028 20.1 3.3 18 46-63 116-133 (202)
415 PF09968 DUF2202: Uncharacteri 23.5 42 0.00091 22.8 0.9 24 18-41 126-149 (162)
416 CHL00098 tsf elongation factor 23.4 61 0.0013 22.5 1.8 44 22-65 29-77 (200)
417 PLN02813 pfkB-type carbohydrat 23.4 2.5E+02 0.0055 21.1 5.2 41 24-64 164-205 (426)
418 COG1225 Bcp Peroxiredoxin [Pos 23.3 86 0.0019 21.0 2.4 19 45-63 118-136 (157)
419 cd01763 Sumo Small ubiquitin-r 23.3 1.6E+02 0.0036 17.0 4.1 22 45-66 9-30 (87)
420 COG3642 Mn2+-dependent serine/ 23.3 2.4E+02 0.0051 20.0 4.7 29 26-64 52-80 (204)
421 cd04927 ACT_ACR-like_2 Second 23.2 1.6E+02 0.0034 16.7 5.1 41 18-58 9-53 (76)
422 PRK03573 transcriptional regul 23.0 1.5E+02 0.0033 18.2 3.5 33 22-54 62-94 (144)
423 TIGR01681 HAD-SF-IIIC HAD-supe 22.9 74 0.0016 19.6 1.9 20 20-39 31-50 (128)
424 cd00340 GSH_Peroxidase Glutath 22.9 88 0.0019 19.5 2.3 15 49-63 125-139 (152)
425 PF12142 PPO1_DWL: Polyphenol 22.8 1.1E+02 0.0023 17.2 2.4 16 49-64 11-26 (54)
426 PRK13883 conjugal transfer pro 22.8 2.1E+02 0.0046 19.1 4.2 37 24-60 67-119 (151)
427 PRK14465 ribosomal RNA large s 22.8 3.3E+02 0.0071 20.3 5.6 38 27-64 55-96 (342)
428 cd03040 GST_N_mPGES2 GST_N fam 22.7 1.1E+02 0.0025 16.5 2.5 20 23-42 13-32 (77)
429 PF02955 GSH-S_ATP: Prokaryoti 22.6 1.6E+02 0.0035 19.7 3.7 39 20-58 128-166 (173)
430 TIGR00318 cyaB adenylyl cyclas 22.6 84 0.0018 20.6 2.3 34 20-57 10-43 (174)
431 PRK13237 tyrosine phenol-lyase 22.5 1.1E+02 0.0025 23.8 3.2 27 22-52 324-350 (460)
432 PRK03381 PII uridylyl-transfer 22.5 2.3E+02 0.005 23.2 5.1 45 17-61 715-762 (774)
433 COG0011 Uncharacterized conser 22.5 83 0.0018 19.8 2.1 20 21-40 21-40 (100)
434 PTZ00292 ribokinase; Provision 22.4 2.7E+02 0.0059 19.3 5.5 39 24-63 82-124 (326)
435 PRK00031 lolA lipoprotein chap 22.4 1.5E+02 0.0032 19.3 3.4 23 44-66 148-170 (195)
436 PF02547 Queuosine_synth: Queu 22.3 1.2E+02 0.0025 22.9 3.2 25 18-42 181-205 (341)
437 TIGR00213 GmhB_yaeD D,D-heptos 22.3 89 0.0019 20.0 2.3 20 20-39 28-47 (176)
438 PF02373 JmjC: JmjC domain, hy 22.1 1.7E+02 0.0037 16.8 3.4 15 28-42 71-85 (114)
439 PF10099 RskA: Anti-sigma-K fa 22.1 1E+02 0.0022 19.4 2.5 22 41-62 104-125 (175)
440 PF10706 Aminoglyc_resit: Amin 22.1 2.8E+02 0.006 19.2 5.2 38 20-63 51-88 (174)
441 cd04905 ACT_CM-PDT C-terminal 22.0 1.6E+02 0.0035 16.4 4.8 46 11-58 5-53 (80)
442 KOG3087 Serine/threonine prote 22.0 1.3E+02 0.0028 21.7 3.2 29 26-64 63-91 (229)
443 PF07485 DUF1529: Domain of Un 22.0 2.3E+02 0.0049 18.2 4.6 19 21-39 68-86 (123)
444 PF14157 YmzC: YmzC-like prote 22.0 1.7E+02 0.0037 17.0 3.2 20 44-63 37-56 (63)
445 cd00130 PAS PAS domain; PAS mo 22.0 1E+02 0.0022 14.1 2.2 14 50-63 5-18 (103)
446 TIGR01231 lacC tagatose-6-phos 21.9 2.8E+02 0.006 19.1 5.9 39 24-64 64-103 (309)
447 PRK14681 hypothetical protein; 21.9 2.6E+02 0.0056 18.7 5.5 41 19-59 46-87 (158)
448 PRK13189 peroxiredoxin; Provis 21.9 1.3E+02 0.0028 20.6 3.1 18 46-63 125-142 (222)
449 COG0047 PurL Phosphoribosylfor 21.9 2.1E+02 0.0045 20.6 4.2 32 24-57 153-184 (231)
450 PF05402 PqqD: Coenzyme PQQ sy 21.8 54 0.0012 17.7 1.1 23 13-35 44-66 (68)
451 PF05228 CHASE4: CHASE4 domain 21.8 91 0.002 19.2 2.2 38 24-61 22-64 (161)
452 PF03720 UDPG_MGDP_dh_C: UDP-g 21.7 1.3E+02 0.0027 18.0 2.8 16 24-39 20-35 (106)
453 PRK14463 ribosomal RNA large s 21.7 2.8E+02 0.0061 20.5 5.1 38 27-64 55-96 (349)
454 TIGR00048 radical SAM enzyme, 21.7 3.4E+02 0.0074 20.1 5.7 38 27-64 57-98 (355)
455 cd02967 mauD Methylamine utili 21.7 92 0.002 17.9 2.1 16 45-60 94-109 (114)
456 PRK01546 hypothetical protein; 21.6 51 0.0011 20.0 0.9 14 47-60 49-62 (79)
457 cd03054 GST_N_Metaxin GST_N fa 21.4 1.2E+02 0.0026 16.2 2.5 20 24-43 20-39 (72)
458 PF07283 TrbH: Conjugal transf 21.4 2.3E+02 0.005 18.2 4.1 38 22-59 37-88 (121)
459 PF01055 Glyco_hydro_31: Glyco 21.3 1.2E+02 0.0025 22.4 3.0 39 19-57 81-132 (441)
460 COG5304 Uncharacterized protei 21.3 75 0.0016 19.9 1.7 26 10-39 54-79 (92)
461 PF02362 B3: B3 DNA binding do 21.3 1E+02 0.0022 17.6 2.3 17 48-64 34-50 (100)
462 PF11922 DUF3440: Domain of un 21.3 83 0.0018 21.9 2.1 37 24-60 106-143 (181)
463 PF09124 Endonuc-dimeris: T4 r 21.3 88 0.0019 17.7 1.8 18 22-39 17-34 (54)
464 COG5402 Uncharacterized conser 21.0 1.1E+02 0.0025 21.4 2.7 33 28-61 85-118 (194)
465 cd06600 GH31_MGAM-like This fa 21.0 2.4E+02 0.0051 20.3 4.5 41 19-59 62-114 (317)
466 PRK03147 thiol-disulfide oxido 21.0 2.2E+02 0.0048 17.6 5.1 51 7-62 95-154 (173)
467 PRK11829 biofilm formation reg 20.9 56 0.0012 25.1 1.3 54 8-61 523-584 (660)
468 PF07966 A1_Propeptide: A1 Pro 20.9 76 0.0016 15.3 1.4 20 13-36 3-22 (29)
469 PF02677 DUF208: Uncharacteriz 20.9 1.4E+02 0.003 20.4 3.1 16 24-39 12-27 (176)
470 PF01514 YscJ_FliF: Secretory 20.9 2.1E+02 0.0046 19.5 4.0 20 22-41 39-58 (206)
471 cd01748 GATase1_IGP_Synthase T 20.8 88 0.0019 20.5 2.1 23 19-41 7-29 (198)
472 KOG2882 p-Nitrophenyl phosphat 20.8 68 0.0015 24.0 1.6 18 47-64 21-38 (306)
473 PRK11512 DNA-binding transcrip 20.7 1.9E+02 0.0041 17.9 3.6 32 23-54 71-102 (144)
474 cd03762 proteasome_beta_type_6 20.7 1.1E+02 0.0024 19.9 2.5 19 47-65 108-126 (188)
475 PF01740 STAS: STAS domain; I 20.6 1.7E+02 0.0037 17.1 3.2 34 6-39 47-85 (117)
476 cd03010 TlpA_like_DsbE TlpA-li 20.6 2E+02 0.0043 16.9 4.4 40 24-63 68-117 (127)
477 cd03016 PRX_1cys Peroxiredoxin 20.6 1.5E+02 0.0033 19.7 3.2 17 47-63 117-133 (203)
478 PRK04043 tolB translocation pr 20.6 1.7E+02 0.0036 22.0 3.7 37 25-61 141-182 (419)
479 KOG0183 20S proteasome, regula 20.6 1.5E+02 0.0033 21.5 3.3 40 20-59 105-154 (249)
480 PF05367 Phage_endo_I: Phage e 20.5 1.7E+02 0.0036 19.8 3.3 39 25-63 22-67 (149)
481 PRK00522 tpx lipid hydroperoxi 20.5 1.8E+02 0.004 18.6 3.5 18 47-64 131-148 (167)
482 TIGR00106 uncharacterized prot 20.5 99 0.0022 18.9 2.1 20 21-40 19-38 (97)
483 PRK14836 undecaprenyl pyrophos 20.4 1.2E+02 0.0025 21.8 2.7 32 8-39 16-63 (253)
484 PRK05234 mgsA methylglyoxal sy 20.4 2.1E+02 0.0047 18.4 3.8 17 24-40 39-56 (142)
485 COG1218 CysQ 3'-Phosphoadenosi 20.3 1.7E+02 0.0037 21.4 3.6 34 26-59 54-96 (276)
486 PF07984 DUF1693: Domain of un 20.2 2.3E+02 0.0049 21.4 4.3 43 23-65 36-80 (320)
487 cd03014 PRX_Atyp2cys Peroxired 20.1 1.4E+02 0.003 18.1 2.7 18 47-64 110-127 (143)
488 cd04900 ACT_UUR-like_1 ACT dom 20.0 1.7E+02 0.0037 16.0 4.6 41 20-60 12-56 (73)
489 PRK10426 alpha-glucosidase; Pr 20.0 3.7E+02 0.0081 21.6 5.7 44 19-62 267-320 (635)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.25 E-value=2.7e-11 Score=75.39 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=45.5
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.++|+||.++ .++++.++|+++|+++...+.. ..+.+++|++|||||.|||...
T Consensus 87 g~~hia~~v~------d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 87 GLRRVMFAVD------DIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CceEEEEEeC------CHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 4789999997 5899999999999999764433 2568999999999999999863
No 2
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.25 E-value=4.6e-11 Score=71.55 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=44.4
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+.+.|++|.++. ...++++.++|+++|+++...+. ...+.++.|+.|||||.|||.
T Consensus 69 ~g~~hi~f~v~~---~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 69 TGWAHLAFSVGS---KEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CceEEEEEECCC---HHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 356899999962 45699999999999999976332 334567889999999999983
No 3
>PRK10291 glyoxalase I; Provisional
Probab=99.24 E-value=4.1e-11 Score=73.98 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=45.3
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
++.|++|.++ .++++.++|+++|+++... +.+++..+++||+|||||.|||+...
T Consensus 65 ~~~hlaf~V~------d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 65 AYGHIALSVD------NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CeeEEEEEeC------CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 5789999997 3689999999999998643 34455567899999999999999754
No 4
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.21 E-value=5.3e-11 Score=72.74 Aligned_cols=56 Identities=20% Similarity=0.094 Sum_probs=45.4
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+..|++|.++ +.+.++++.++|+++|+++...+.+....+++||+|||||.|||..
T Consensus 68 ~~~~l~f~v~---~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 68 TEVLISLSAD---SREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CeEEEEEeCC---CHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 3568888887 3456999999999999999765544455688999999999999974
No 5
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.21 E-value=5.2e-11 Score=74.46 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=46.2
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.|+||.++ ...+++..++|+++|+++.... .+.+..+++||.|||||.|||.+..
T Consensus 66 ~~~Hiaf~v~----~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 66 TYNHIAFKIS----DSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred CceEEEEEcC----HHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 4789999997 3579999999999999986532 2333468999999999999998653
No 6
>PRK11478 putative lyase; Provisional
Probab=99.21 E-value=8e-11 Score=71.69 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=43.6
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.|++|.++ .++++.++|+++|+++.... .+..+.+++||+|||||.|||..
T Consensus 75 g~~hi~f~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 75 GLRHLAFSVD------DIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred ceeEEEEEeC------CHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4679999887 48899999999999986432 24456789999999999999975
No 7
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.21 E-value=5.3e-11 Score=71.63 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=44.3
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-----CCCCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-----PDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-----p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.|++|.+. ...++++.++|+++|+++...+. +.++.+.+|+.|||||.|||..+
T Consensus 65 ~~~h~~~~~~----~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 65 PVPHFGLILS----EEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred CCceEEEEEe----HHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 4578888887 46699999999999999964322 12346899999999999999753
No 8
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.19 E-value=1.2e-10 Score=71.45 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=46.0
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--------CCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--------PDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--------p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
....|++|.++. ..++++.++|+++|+++...+. ...+.+.+||+|||||.|||++.+
T Consensus 57 ~~~~h~a~~v~~----~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 57 IPPQHYAFLVSE----EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CCcceEEEEeCH----HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 456899999883 4599999999999999844211 124569999999999999999763
No 9
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.18 E-value=1.3e-10 Score=70.73 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=47.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.|+||.++. ...++++.++|+++|+++...... ..+.+.+|+.|||||.|||+++
T Consensus 68 g~~hia~~v~~---~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 68 GLHHLAFRAPS---REAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CeeEEEEEcCC---HHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 36899999972 456999999999999999775442 3567899999999999999874
No 10
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.17 E-value=9.8e-11 Score=73.69 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=46.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+++.|+||.++ -..++++.++|+++|+++...+.+ ..+.+++|+.|||||.|||....
T Consensus 62 ~~~~hiaf~v~----~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 62 QSYTHIAFSIE----EEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CCeeEEEEEec----HHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 45789999997 356999999999999998543322 23569999999999999998653
No 11
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.17 E-value=1.4e-10 Score=70.96 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=47.4
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEeeecCC
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVASRRDE 68 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~f~~~~ 68 (68)
.+.|++|.++ +.+.|+++.++|+++|+++...+. +.+..+.+||.|||||.|||.+-..|
T Consensus 57 ~~~~~~f~v~---~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~~ 120 (120)
T cd07252 57 DLAYAGWEVA---DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGPKE 120 (120)
T ss_pred ceeEEEEEEC---CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecccC
Confidence 4678998886 346799999999999999975332 22334789999999999999987654
No 12
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.16 E-value=1.3e-10 Score=74.23 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=45.4
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+.+.|+||.++ ++..+.++.++|+++|+++...+. ..++.+.+||+|||||.|||..
T Consensus 66 ~~~~Hiaf~v~---d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLE---SWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcC---CHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 56789999997 466788899999999999864322 2134578999999999999964
No 13
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.16 E-value=2.6e-10 Score=69.33 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=45.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
..+.|++|.++ +...++++.++|+++|+++...+. +....+++||.|||||.|||.+..
T Consensus 60 ~~~~hiaf~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 60 AGLDFMGFKVL---DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCeeEEEEEeC---CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 35689999986 244689999999999999865322 223347899999999999998754
No 14
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.16 E-value=1.6e-10 Score=69.28 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=46.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
..+.|++|.++ ...++++.++|+++|+++........+.+++|+.|||||.|||.+
T Consensus 66 ~~~~~~~~~v~----~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 66 SGPGHFAFAIP----AEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CCccEEEEEcC----HHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEec
Confidence 45789999987 366999999999999998765443455688999999999999986
No 15
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.15 E-value=1.3e-10 Score=70.17 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=45.0
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
..+.|++|.++ ...++++.++|+++|+++.....+ .+.+++||.|||||.|||.+..
T Consensus 54 ~~~~~~~~~~~----~~d~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 54 KRLAYLSFGIF----EDDFAAFARHLEAAGVALAAAPPG-ADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred CceeeEEEEeE----hhhHHHHHHHHHHcCCceecCCCc-CCCCEEEEECCCCCEEEEecCC
Confidence 34678888876 456999999999999998654323 3457899999999999998653
No 16
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.15 E-value=1.6e-10 Score=75.30 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=47.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|++|.++ +...++++.++|+++|+.+... ...+..+++||+|||||.|||..+.
T Consensus 64 ~~l~Hiaf~v~---d~~dvd~~~~~L~~~Gv~~~~~-~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 64 GTVHHVAFRVP---DDEELEAWKERLEALGLPVSGI-VDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CceEEEEEECC---CHHHHHHHHHHHHHCCCCcccc-cccccEEEEEEECCCCcEEEEEECC
Confidence 56789999998 3456999999999999987542 2334568999999999999999764
No 17
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.15 E-value=2.2e-10 Score=73.52 Aligned_cols=60 Identities=13% Similarity=0.280 Sum_probs=48.6
Q ss_pred ccceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.+.|+||.++ +...++++.++|+++|+++... ..+.++.+++|++|||||.|||.+..
T Consensus 54 ~~gl~Hiaf~v~---~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 54 SSHFHHVNFMVT---DIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCceEEEEEECC---CHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 357899999988 3456899999999999998532 33446678899999999999998754
No 18
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.14 E-value=1.2e-10 Score=72.95 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=46.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+++.|+||.++. ..|+++.++|+++|+++.....+. .+.+++||.|||||.|||.+.
T Consensus 58 ~~~~hiaf~v~~----~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 58 QSYTHIAFTIED----SEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred ccceEEEEEecH----HHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence 457899999983 469999999999999986433222 356899999999999999875
No 19
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.13 E-value=3.1e-10 Score=69.06 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=44.9
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
..+.|+||.++ +...++++.++|+++|+++... ..+ +..+.+||+|||||.|||.+..
T Consensus 61 ~~~~h~af~v~---~~~~v~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 61 AGLGHIAWRAS---SPEALERRVAALEASGLGIGWIEGDP-GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CceEEEEEEcC---CHHHHHHHHHHHHHcCCccccccCCC-CCcceEEEECCCCCEEEEEEec
Confidence 35789999986 3456999999999999998432 222 3346799999999999999754
No 20
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.11 E-value=2.4e-10 Score=68.01 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=44.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+...|++|.++ -..++++.++|+++|+++.... .+....+.+|++|||||.||+..
T Consensus 54 ~~~~hiaf~v~----~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 54 RTYTHIAFQIQ----SEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CCccEEEEEcC----HHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 34679999998 3469999999999999986432 22234589999999999999985
No 21
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.10 E-value=3.1e-10 Score=73.19 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=47.7
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.+.|++|.++ ....|+++.++|+++|+++... ..+.++.+++|+.|||||.|||.+.
T Consensus 72 ~g~~Hiaf~V~---d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 72 KRIHHLMLEVT---SLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred ceeEEEEEEcC---CHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 56889999997 3556899999999999998643 2344677899999999999999764
No 22
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.10 E-value=5e-10 Score=67.02 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=44.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
++.|++|.++ .++++.++|+++|+.+...+.+..+.+.+||.|||||.|||.
T Consensus 70 ~~~~i~~~v~------did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 70 GFGHLAFAVD------DVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred CeEEEEEEeC------CHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 5679999987 389999999999999977655555567899999999999984
No 23
>PRK06724 hypothetical protein; Provisional
Probab=99.09 E-value=6.2e-10 Score=70.58 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=46.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--C--CCCeeEEEEeCCCCCeEEEeeecC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--P--DGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p--~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
....|+||.+. +-..+++..++|+++|+++...+. + ..+.+.+||.|||||.|||.+.++
T Consensus 62 ~g~~h~af~v~---~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 62 LGPRHICYQAI---NRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred CCceeEEEecC---ChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 35789999974 244689999999999999854322 2 245688999999999999987653
No 24
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.07 E-value=7.9e-10 Score=66.79 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=44.9
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|++|.++ +-+.+++..++|+++|+++.... .....+.+|+.|||||.|||....
T Consensus 63 ~~~~hi~f~v~---~~~~v~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 63 TGLYHFAILLP---SRADLAAALRRLIELGIPLVGAS-DHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CcEEEEEEECC---CHHHHHHHHHHHHHcCCceeccc-cccceeEEEEECCCCCEEEEEEec
Confidence 34679999997 23458999999999999885532 223347899999999999998654
No 25
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.06 E-value=5.3e-10 Score=69.82 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=45.7
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe--eeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ--RSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~--~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.+.|+||.++ .+..+.++.++|+++|+++.. ...+.++.+++||.|||||.|||...
T Consensus 61 ~g~~hiaf~v~---d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 61 AGFHHAAFEVG---DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred CcceEEEEEeC---CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 56889999997 355677777899999999853 23344566889999999999999854
No 26
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.06 E-value=8e-10 Score=65.74 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=43.5
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--C--CCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--D--GKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~--~~~~QiF~~DPDGn~IEL~f~ 65 (68)
...|++|.++. . ++++.++|+++|+++...+.+ . +..+.+||.|||||.||+.++
T Consensus 67 ~~~hi~~~~~~----~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 67 GSDDLCLITEP----P-IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred CCceEEEEecc----c-HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 46799998872 2 899999999999998654332 1 235889999999999999864
No 27
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.05 E-value=1.1e-09 Score=68.75 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=47.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeecC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
..+.|++|.++ .++++.++|+++|+++...+.. ..+.+.+|++|||||.|||.....
T Consensus 68 ~g~~hia~~V~------Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 68 DGVCDVAFRVD------DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CceEEEEEEeC------CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 46789999987 4999999999999999654333 467899999999999999997543
No 28
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.03 E-value=6.5e-10 Score=64.51 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=43.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEE
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL 62 (68)
++..|++|.++ .++++.++|+++|+++.....+..+.+.+++.|||||.|||
T Consensus 63 ~~~~~~~~~v~------d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 63 GRDDHIAFRVD------DLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred cccceEEEEeC------CHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 45779999887 28899999999999997655444456789999999999996
No 29
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.03 E-value=7.1e-10 Score=67.75 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=45.3
Q ss_pred ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.+.|++|.++ ...++++.++|+++|+++.... ....+.+||.|||||.||+.+-+
T Consensus 55 ~~~~~hi~f~v~----~~dl~~~~~~l~~~G~~~~~~~--~~~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 55 AKDYTHYAFSVS----EEDFASLKEKLRQAGVKEWKEN--TSEGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred CCCeeeEEEEeC----HHHHHHHHHHHHHcCCcccCCC--CCCccEEEEECCCCCEEEEEeCC
Confidence 356789999987 3469999999999999985432 22237899999999999998754
No 30
>PLN02367 lactoylglutathione lyase
Probab=99.03 E-value=1.3e-09 Score=77.00 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=46.1
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.|++|.++ .+++++++|+++|+++...+......+.+|++|||||.|||..+.
T Consensus 169 G~~HIaf~Vd------DVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 169 GFGHIGITVD------DVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CceEEEEEcC------CHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 5889999887 599999999999999976544444467889999999999998754
No 31
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.03 E-value=1e-09 Score=66.68 Aligned_cols=52 Identities=17% Similarity=0.019 Sum_probs=40.1
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCc-eEEeeee-CCCCeeEEEEeCCCCCeEEEeee
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGI-QTFQRSL-PDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI-~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.|++|.++ .++++.++|+++|+ ++...+. ...+.+++||+|||||.|||..+
T Consensus 66 ~~l~~~v~------dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 66 FELYFEEE------DFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred eEEEEEeh------hhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 47778665 59999999999985 6644322 22456999999999999999864
No 32
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.03 E-value=1.2e-09 Score=65.92 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=45.8
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|++|.++ ....++++.++|+++|+++... ..+.+..+.+|+.|||||.||+.+.-
T Consensus 59 ~~~~hi~~~v~---~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 59 AGLGHIAFRVR---SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CceeEEEEECC---CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 45789999885 2456999999999999999643 22333347899999999999998753
No 33
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.03 E-value=1.5e-09 Score=67.21 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=47.4
Q ss_pred ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856 4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.+.|++|.++. ...++++.++|+++|+++...+. +.+..+++||.|||||.|||....
T Consensus 57 ~~~~~hl~~~v~d---~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 57 RPGLHHVAFEVES---LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred CCCeeEEEEEcCC---HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 4678899999872 44588899999999999865332 334568899999999999998654
No 34
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.02 E-value=1.4e-09 Score=69.11 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=46.1
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
++.|++|.++ .++++.++|+++|+++...+ .+.+..+.+||.|||||.|||.....
T Consensus 86 g~~hi~f~v~------dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 86 GFGHIAIGVD------DVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred ceeEEEEecC------CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 5779999997 48899999999999986543 45555678999999999999997653
No 35
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.01 E-value=3.7e-09 Score=62.25 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=40.3
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
++..|++|.+ ..++++.++|+++|+++... .....+.+.+++.|||||.|||+
T Consensus 55 ~~~~~~~~~v------~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 55 GGGFHLCFEV------EDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSEEEEEEEE------SHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred CceeEEEEEE------cCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 4566777766 57999999999999997443 33345679999999999999985
No 36
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.00 E-value=1.9e-09 Score=65.16 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=45.7
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-C--CCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-P--DGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p--~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|++|.++ ....|+++.++|+++|+++...+. . .+..+++|+.|||||.|||..+-
T Consensus 57 ~~~~h~~f~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 57 GGLNHLGVQVD---SAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred CCeeEEEEEeC---CHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 35679999886 345689999999999999865321 1 13457899999999999998753
No 37
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.00 E-value=1.3e-09 Score=70.99 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=44.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee-ee---CC-CCeeEEEEeCCCCCeEEEeeecCC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SL---PD-GKVKQVFFFDPDGNGLEVASRRDE 68 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~---p~-~~~~QiF~~DPDGn~IEL~f~~~~ 68 (68)
..+.|++|.++ .++++.++|+++|+++... +. +. .+.+.+|++|||||.|||..+..|
T Consensus 92 ~g~~Hla~~v~------dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 92 TGVFHFCVQDP------DVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred ccceEEEEEcC------CHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 34789999765 5899999999999876331 11 22 246899999999999999987654
No 38
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.00 E-value=2.4e-09 Score=63.67 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=47.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeeecC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
..+.|++|.++ ....++++.++|+++|+++...+.. ..+.+.+|+.|||||.||+.+..+
T Consensus 56 ~~~~h~~~~v~---~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 116 (117)
T cd07240 56 PGVDALGFEVA---SEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEAD 116 (117)
T ss_pred CCceeEEEEcC---CHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEccC
Confidence 45789999987 2335999999999999999665422 234588999999999999997643
No 39
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.99 E-value=1.7e-09 Score=66.92 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=44.6
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
...|++|.++ +...++++.++|+++|+++.....+ .+..+++||.|||||.||+....
T Consensus 59 ~~~~iaf~v~---~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 59 AEQASGFELR---DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ceEEEEEEEC---CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 4568999885 2456999999999999998654321 23356789999999999998653
No 40
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.99 E-value=1.9e-09 Score=69.07 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=44.9
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+++.|++|.++ .+..+.++.++|+++|+++.... ...+..+.+||.|||||.|||.+.
T Consensus 58 ~~~~hiaf~v~---d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 58 PSLNHVAFEMP---SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred CceEEEEEECC---CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 56789999997 35567888899999999986432 122334679999999999999864
No 41
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.99 E-value=2.5e-09 Score=62.93 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=44.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+++.|++|.++ .++++.++|+++|+++.....+....+.+++.|||||.|||+
T Consensus 66 ~~~~~~~~~v~------di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 118 (119)
T cd07263 66 GGTPGLVLATD------DIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLV 118 (119)
T ss_pred CCceEEEEEeh------HHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEe
Confidence 56778999876 489999999999999976554444568999999999999996
No 42
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.99 E-value=2.4e-09 Score=63.95 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=43.4
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.+.|++|.++.. +.++++.++|+++|+++...... .+.+.+||+|||||.|||.
T Consensus 73 ~~~hi~f~v~~~---~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 73 QIHHIAFSVPSE---ASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cEEEEEEEcCCH---HHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 367999999822 25899999999999998653322 5678899999999999984
No 43
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=98.99 E-value=2.4e-09 Score=72.67 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=45.2
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
-+.|++|.++ .++++.++|+++|+++...+....+.+..||+|||||.|||+...
T Consensus 121 G~~Hlaf~V~------Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 121 GFGHIGITVD------DVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CccEEEEEcC------CHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 4789999987 489999999999999975444443467789999999999998754
No 44
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.98 E-value=2e-09 Score=64.40 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=43.0
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+...|++|.++ +.+.++++.++|+++|+++...+...+..+..+|.|||||.|||.
T Consensus 58 ~~~~~~~~~v~---~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 58 GGGSELAFMVD---DGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred CCceEEEEEcC---CHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence 34579999886 245689999999999999965433222226789999999999996
No 45
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.97 E-value=2.8e-09 Score=63.95 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=45.5
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC---CCeeEEEEeCCCCCeEEEeeecC
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD---GKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~---~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
...|++|.++ ....++++.++|+++|+++...+.+. .+.++++|.|||||.|||++...
T Consensus 58 ~~~~~~~~v~---~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 58 RLDVVSFSVA---SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred CCceEEEEeC---CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 3568999886 24568999999999999986543211 24578999999999999998653
No 46
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.97 E-value=2.1e-09 Score=74.88 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=45.2
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~ 63 (68)
|.+.|+||.++ +...+.++.++|+++|+++...+. +.+..+++||.|||||.|||.
T Consensus 206 g~~~Hiaf~v~---~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 206 GKLHHVSFFLD---SWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred CceEEEEEEcC---CHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 55889999998 355789999999999999864332 223457999999999999997
No 47
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.95 E-value=3.1e-09 Score=68.42 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.9
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.+.|+||.++ .++.+..+.++|+++|+++.... .+.+....+|++|||||.|||...
T Consensus 66 ~g~~Hiaf~v~---die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVH---DFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcC---CHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 46899999997 24444555699999999986432 122445678999999999999853
No 48
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.95 E-value=2.9e-09 Score=69.03 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=42.8
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC----CCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----DGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~~~~~QiF~~DPDGn~IEL~f 64 (68)
.++.|+||.++. ...++++.++|+++|++.....-| ..+.+++|+.|||||.|||..
T Consensus 62 ~~~~Hiaf~v~~---~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~ 122 (161)
T cd07256 62 PRLHHVAFWVPE---PHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT 122 (161)
T ss_pred CceeEEEEEcCC---HHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence 357899999872 346899999999999974221112 134578999999999999974
No 49
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.94 E-value=3e-09 Score=64.38 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=43.2
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCC--CCeeEEEEeCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPD--GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~--~~~~QiF~~DPDGn~IEL~ 63 (68)
...|++|.++.. ..++++.++|+++|+.+...+ .+. .+.+++||.|||||.|||.
T Consensus 64 ~~~hi~f~v~~~---~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 64 NGTHVAFAAPSR---EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CceEEEEECCCH---HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 356999999833 458899999999999985433 232 4567899999999999996
No 50
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.92 E-value=6.3e-09 Score=63.01 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=41.0
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|+||.++ ..+++.+.+++.|+++........+.+++||.|||||.|||....
T Consensus 56 ~~~~~~af~v~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 56 ARFVGAAFEAA------SRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CcccEEEEEEC------CHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEecc
Confidence 35779999888 246677778888887754322123457999999999999998753
No 51
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.92 E-value=8.9e-09 Score=61.42 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=41.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+...|++|.++ .++++.++|+++|+++...+. ..+..++++++|||||.|||..
T Consensus 60 ~~~~~~~f~v~------di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 60 PPGWLVYFAVD------DVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 45567787766 488999999999999854332 2235589999999999999963
No 52
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.90 E-value=9.1e-09 Score=61.50 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=41.7
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEeee
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
..|++|.++ .++++.++|+++|+.+...+.. ..+.+.+|+.|||||.|||..+
T Consensus 58 ~~~i~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 58 VPDLSIEVD------DVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCEEEEEeC------CHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 457777765 5889999999999998654332 2356789999999999999864
No 53
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.90 E-value=6.4e-09 Score=63.91 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=45.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.+.|++|.++. ...+++..++|+++|+++.....+ +..+.+|+.|||||.|||.+..
T Consensus 64 ~~~~h~~f~v~~---~~~v~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 64 AGLNHIAFEVDS---LDDLRDLYERLRAAGITPVWPVDH-GNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred CCceEEEEEeCC---HHHHHHHHHHHHHCCCCccccCCC-CceeEEEEECCCCCEEEEEEcC
Confidence 357899999872 456788999999999998654322 3458899999999999999654
No 54
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.90 E-value=6.5e-09 Score=61.78 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=41.7
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.+-|++|.++ .++++.++|+++|+.+..... +..+.+.+|+.||+||.|||.
T Consensus 72 g~~h~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~ 124 (125)
T cd08352 72 GLRHLAFSVE------DIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELY 124 (125)
T ss_pred CceEEEEEeC------CHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEec
Confidence 4568999886 488899999999999865432 234567899999999999986
No 55
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.90 E-value=5.7e-09 Score=68.21 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=45.2
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.+.|+||.++ +.+.|+++.++|+++|+++...+.. ......+|+.|||||.|||...
T Consensus 68 ~~~~hiaf~v~---~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 68 GRLHHLAYALD---TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCceEEEEECC---CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 45789999997 3556899999999999998532222 1334569999999999999876
No 56
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.87 E-value=1.2e-08 Score=60.86 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=42.2
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f 64 (68)
++..|++|.++ .++++.++|.++|+++..... ...+.++++++|||||.|||++
T Consensus 67 ~~~~~~~~~v~------d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 67 GTPVSLHLYVE------DVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred CceEEEEEEeC------CHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 34567777665 588899999999999854332 3456789999999999999985
No 57
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.86 E-value=1.1e-08 Score=61.35 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=40.4
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f 64 (68)
-|++|.++ .++++.++|+++|+++...+.. ..+.++++++|||||.|||..
T Consensus 68 ~~~~~~v~------did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 68 LILNFEVD------DVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred EEEEEEEC------CHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 37888765 5999999999999998643322 235799999999999999963
No 58
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.85 E-value=9.6e-09 Score=62.07 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=39.1
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEe
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~ 63 (68)
.|++|.+. ....++++.++|+++|+++...+... .+.++++|+|||||.|||+
T Consensus 68 ~~l~~~~~---~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 68 IALAFLCE---TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EEEEEEcC---CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 35666654 13459999999999999885432211 3458899999999999996
No 59
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=98.84 E-value=1.5e-08 Score=60.10 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=41.8
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEE
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL 62 (68)
+.|++|.++ ....|+++.++|++.|+++...+. +.++....|++|||||.|||
T Consensus 74 ~~~i~~~~~---~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 74 GHHIAFLAF---DVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SEEEEEEES---SHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ceeEEEEec---cHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 567888776 355689999999999999976543 44555556799999999997
No 60
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.2e-08 Score=69.46 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=45.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCe-eEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKV-KQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~-~QiF~~DPDGn~IEL~f~~ 66 (68)
--.|+.|.|| .+..++++|+++||++.+ ..+.+.+ .++|++||||+.||+....
T Consensus 115 GfgHIci~V~------di~sac~~lkekGV~f~K-k~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 115 GFGHICIEVD------DINSACERLKEKGVRFKK-KLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ccceEEEEeC------CHHHHHHHHHHhCceeee-cCCCccccceeEEECCCCCeEEEeecC
Confidence 3579999988 689999999999999544 4466766 8999999999999997643
No 61
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.84 E-value=1.1e-08 Score=70.65 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=46.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.|++|.++ +.+.++++.++|+++|+++.....+.. .+.+||.|||||.|||...
T Consensus 60 ~~~hiaf~v~---~~~dl~~~~~~l~~~Gv~v~~~~~~~~-~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 60 ALSYIGFRVS---KEEDLDKAADFFQKLGHPVRLVRDGGQ-PEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred CccEEEEEeC---CHHHHHHHHHHHHhcCCcEEeecCCCC-ceEEEEECCCCCEEEEEEc
Confidence 4679999987 245699999999999999976544443 4999999999999999864
No 62
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.82 E-value=1.4e-08 Score=70.51 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=45.9
Q ss_pred ccceeeEEEecChhhccccHHHHHHHHHHcCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856 4 AGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+++.|+||.++ ..+.+.+..++|+++|+.+.... .+.++.+++|++|||||.||+..
T Consensus 204 ~~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 204 EKRLNHLMLEVD---TLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred CCceEEEEEEcC---CHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 357889999987 46678899999999999443322 23356789999999999999975
No 63
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.82 E-value=1.2e-08 Score=62.07 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHcCceEEe-----eeeC---CCCeeEEEEeCCCCCeEEEeee
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ-----RSLP---DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~-----~~~p---~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
...++++.++|+++|+.+.. ...| ..+.+++||+|||||.|||...
T Consensus 66 v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 66 LPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred eCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 34699999999999998631 1112 1467999999999999999763
No 64
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=98.80 E-value=1.5e-08 Score=61.02 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=41.1
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEee-ee-CCCCeeEEEE--eCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SL-PDGKVKQVFF--FDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~-p~~~~~QiF~--~DPDGn~IEL~ 63 (68)
.+.|++|.++ .++++.++|+++|+++... +. +..+.+++|+ +|||||.||+.
T Consensus 72 g~~~i~~~v~------di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~ 127 (128)
T TIGR03081 72 GIHHIAIEVD------DIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELE 127 (128)
T ss_pred ceEEEEEEcC------CHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEec
Confidence 4679999876 4889999999999999542 22 2345678888 79999999986
No 65
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.79 E-value=3.1e-08 Score=59.00 Aligned_cols=45 Identities=20% Similarity=0.067 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHcCceEEeeeeC-CCCeeEEEEeCCCCCeEEEee
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLP-DGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p-~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.++++.++|++.|+++...... ..+.+.+|++|||||.||+.+
T Consensus 75 ~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 75 EEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 467999999999999999643321 234689999999999999976
No 66
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.76 E-value=5.6e-08 Score=58.82 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=41.7
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+-.|++|.++ .++++.++|+++|+.+....... -+.+..+++|||||.|+|..+
T Consensus 68 ~~~~~~~~v~------d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 68 GTQGVYVVVD------DVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred ceEEEEEEEC------CHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 3457777775 47999999999999997544332 345788999999999999753
No 67
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.76 E-value=2.5e-08 Score=58.67 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=38.4
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCce-EEe-eeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQ-TFQ-RSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~-~~~-~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.|++|.++ .++++.++|+++|+. +.. ......+.+.+++.|||||.|||.
T Consensus 60 ~~~~~~~~------~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 111 (112)
T cd08349 60 GSVYIEVE------DVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFG 111 (112)
T ss_pred EEEEEEeC------CHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEec
Confidence 36777665 389999999999998 433 222234568999999999999986
No 68
>PLN02300 lactoylglutathione lyase
Probab=98.76 E-value=3.4e-08 Score=69.20 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=45.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeee--eCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRS--LPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+.|++|.++ .++++.++|+++|+++...+ .+.++.+++||.|||||.|||....
T Consensus 93 g~~hia~~v~------dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 93 GFGHFGIAVE------DVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred CccEEEEEeC------CHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 4679999886 48999999999999986543 3445567899999999999998764
No 69
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.75 E-value=4.3e-08 Score=68.31 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=45.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEeeec
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
..+.|++|.++ +...|+++.++|+++|+++...+. ..+..+.+||.|||||.|||....
T Consensus 59 ~g~~hiaf~v~---~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 59 AGLDHMAFKVE---SEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred CceeEEEEEeC---CHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcc
Confidence 34789999986 244589999999999999965332 112337899999999999999754
No 70
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.75 E-value=5.2e-08 Score=58.61 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=39.7
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
-|++|.++ .++++.++|+++|+++... ..|+ +.+..+++|||||.|||.++
T Consensus 73 ~~~~~~v~------di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTD------DVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcC------CHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 46777664 5899999999999988543 3344 45788999999999999763
No 71
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.73 E-value=4.3e-08 Score=55.73 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=43.0
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEE
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL 62 (68)
+...|++|.++ .++++.++|+++|+.+..... +..+.+.+++.||+||.|||
T Consensus 60 ~~~~~~~~~v~------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 60 GGGVHLAFEVD------DVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred CCeeEEEEECC------CHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 45679999987 358899999999999976553 45667999999999999986
No 72
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.71 E-value=4.5e-08 Score=59.74 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHcCceEEe------eeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ------RSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~------~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
..+++++.++|+++|+++.. ......+.++++|.|||||.|++.
T Consensus 63 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 63 VDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred ECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEee
Confidence 34799999999999997531 111124569999999999999985
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.71 E-value=4.2e-08 Score=67.82 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=43.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCce--EEeee--eCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQ--TFQRS--LPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~--~~~~~--~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.+.|+||.++ ....+.+..++|+++|++ +...+ ...+...++|++|||||.|||...
T Consensus 195 ~~~~Hiaf~v~---d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 195 PRLHHIAYWVH---DPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred CceeeEEEEcC---CHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 45789999997 245688899999999998 43221 122345789999999999999864
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.67 E-value=7.5e-08 Score=66.86 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=44.2
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.|++|.++ +...|+++.++|+++|+++...+. ..+..+.+||.|||||.|||...
T Consensus 58 ~~~~~~f~V~---~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 58 DLAYAGWEVA---DEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred CeeeEeeeeC---CHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 4678899887 234589999999999999965332 12345779999999999999864
No 75
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.58 E-value=2.3e-07 Score=55.54 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=41.2
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCC--CCeEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPD--GNGLEVA 63 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPD--Gn~IEL~ 63 (68)
.+..|++|.++ .++++.++|+++|+++...+. +.++.+.+|+.||| ||.|||.
T Consensus 71 ~g~~h~~f~v~------d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~ 127 (128)
T cd07249 71 EGLHHIAFEVD------DIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELV 127 (128)
T ss_pred CceEEEEEEeC------CHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEec
Confidence 44689999887 388999999999999966443 44566666666666 9999986
No 76
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.56 E-value=1.8e-07 Score=60.21 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=32.7
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.|++|.++. ..+.++|+++|+++...+. ...|+.||||+.|||.
T Consensus 82 ~~~hlav~~-------~d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~ 125 (127)
T cd08358 82 DFLGITIHS-------KQAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLI 125 (127)
T ss_pred CEEEEEEEC-------HHHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEe
Confidence 366666651 1344999999999975221 2899999999999996
No 77
>PLN02300 lactoylglutathione lyase
Probab=98.34 E-value=2.5e-06 Score=59.81 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=44.8
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
....|++|.++ .+++++++++++|+.+... ..|..+.+.++|.|||||.|+|...
T Consensus 222 ~~~~~i~~~v~------di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~ 278 (286)
T PLN02300 222 NAYAQIAIGTD------DVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDN 278 (286)
T ss_pred CceeEEEEecC------CHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEcc
Confidence 44568888886 5999999999999999664 4455556899999999999999854
No 78
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.20 E-value=2.7e-06 Score=61.39 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=44.6
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
-+=|+||-+| .-..|...+.+|.++|+++.. .+..- .--+|+.||+||.||+.-+.
T Consensus 71 GLyH~AfLlP---~r~~L~~~l~hl~~~~~~l~Ga~DH~v--SEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 71 GLYHTAFLLP---TREDLARVLNHLAEEGIPLVGASDHLV--SEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ceeeeeeecC---CHHHHHHHHHHHHhcCCcccccCcchh--heeeeecCCCCCeEEEEecC
Confidence 3669999999 345699999999999999973 23222 36699999999999998663
No 79
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=97.66 E-value=8.1e-05 Score=49.03 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=42.1
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC-----CCeeEEEEeCCCCCeEEEee
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD-----GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~-----~~~~QiF~~DPDGn~IEL~f 64 (68)
++||..-.+ ++.--+.-++|.++||+|..++.-. +..+-+|+.||.||-||+--
T Consensus 70 ~pHfGvVl~----~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 70 PPHFGVVLP----VEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred CccceEEEE----HHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 567777777 4456667799999999997654422 56788999999999999863
No 80
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=97.40 E-value=9.9e-05 Score=42.52 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=37.4
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
..|.+|.++... .....+...+..|..+..... .....++|++||||+.||+.
T Consensus 85 ~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~ 137 (138)
T COG0346 85 LGHLAFEVDDEA---FGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELA 137 (138)
T ss_pred cCceeEeccccc---ccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEee
Confidence 567777777332 566677777888888855432 22222999999999999985
No 81
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=97.02 E-value=0.0022 Score=39.72 Aligned_cols=43 Identities=12% Similarity=-0.163 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.+.++++.++|++.|...... ..|++ .+...+.||+|+.|+|+
T Consensus 85 ~e~v~~~~~~l~~~g~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 85 EEEADRLFEALSEGGTVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred HHHHHHHHHHHhcCCeEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 445788889999999333332 22333 47899999999999984
No 82
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=96.99 E-value=0.0059 Score=36.05 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
..+++.+.|++.|..+.+......+.+.+...|+||+.+|+...+
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 388999999999999999888777779999999999999998765
No 83
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=96.61 E-value=0.0031 Score=41.72 Aligned_cols=49 Identities=22% Similarity=0.095 Sum_probs=41.2
Q ss_pred hhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+++-+..++++++-++.|-.....+++.+.+.-.-|.||||+.||+..-
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEe
Confidence 3456778999999999998887677777888889999999999999753
No 84
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=96.21 E-value=0.031 Score=36.52 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=41.8
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCC-CeeEEEEeCCCCCeEEEeeec
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG-KVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~-~~~QiF~~DPDGn~IEL~f~~ 66 (68)
++..+-+. ..+++++++|.++.|=.+.....+-+ .-+-..+.||+||.|-|.+..
T Consensus 71 ~~~~iy~~----v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 71 GGWVIYFA----VDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCEEEEEe----cCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 34444444 45799999999999999966554433 568899999999999998754
No 85
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.18 E-value=0.054 Score=32.51 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=42.6
Q ss_pred eEEEecChhhccccHHHHHHHHHH-cCceEEe-eeeCCCCeeEEEEeCCCC-CeEEEeeecC
Q 036856 9 FFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQ-RSLPDGKVKQVFFFDPDG-NGLEVASRRD 67 (68)
Q Consensus 9 ~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~-~~~p~~~~~QiF~~DPDG-n~IEL~f~~~ 67 (68)
|++|-++ .|+++++.+.+ .|+.... ...+..+.+..|+..++| ..|||+.+..
T Consensus 2 Hv~i~V~------Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 2 HVGIVVP------DLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEES-------HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESS
T ss_pred EEEEEcC------CHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 7788777 69999999998 8988744 445667788899999999 7899998754
No 86
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.13 E-value=0.017 Score=34.70 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=27.9
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe-eeeCC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPD 44 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~ 44 (68)
+.+.|++|.++ .+++++++|+++|+++.. ...+.
T Consensus 67 ~gi~Hia~~v~------D~d~~~~~l~~~G~~~~~~~~~~g 101 (109)
T PF13669_consen 67 GGIHHIAFEVD------DLDAAIARLEAQGFRVLDEGPRPG 101 (109)
T ss_dssp SEEEEEEEEES------HHHHHHHHHHHTTECEEECEEEET
T ss_pred CCEEEEEEEeC------CHHHHHHHHHHCCCEEcccCcccC
Confidence 56899999997 599999999999999854 34444
No 87
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=94.05 E-value=0.082 Score=35.41 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=25.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
..++|+||.++ .+++++++|+++|+++..
T Consensus 82 ~Gv~HIAf~vd------DI~~~~~~L~~~Gv~~l~ 110 (191)
T cd07250 82 AGVQHIALATD------DIFATVAALRARGVEFLP 110 (191)
T ss_pred CceeEEEEECC------CHHHHHHHHHHcCCeecc
Confidence 46899999987 599999999999999854
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=0.71 Score=30.31 Aligned_cols=44 Identities=11% Similarity=-0.086 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCceEEee--eeCCCCeeEEEEeCCCCCeEEEeeecC
Q 036856 23 LSFGCFLLVEKGIQTFQR--SLPDGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~--~~p~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
+++..++|.+.|+.+.-. +++++ -+.--+.||.|+.|-|+....
T Consensus 88 ~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 88 VDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred HHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 899999999999777543 33444 488889999999999997653
No 89
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=91.31 E-value=0.39 Score=34.52 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL 62 (68)
-.|.+++.+.++++||.+. -....+-.||++|||++.+=+
T Consensus 147 ~~h~~~i~k~wk~rgi~F~---~~k~slISV~~h~~d~~~lFv 186 (250)
T PF14133_consen 147 KVHAEKIQKYWKERGIKFN---NDKASLISVFLHDPDDNSLFV 186 (250)
T ss_pred HHHHHHHHHHHHHcCceeC---CCceEEEEEEEEcCCCCeEEe
Confidence 4678889999999999992 123567889999999998753
No 90
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=90.14 E-value=0.34 Score=35.10 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=25.4
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
..++|+||.++ .+.+++++|+++|+++..
T Consensus 237 ~Gv~HiAf~vd------Di~~~~~~l~~~Gv~~l~ 265 (353)
T TIGR01263 237 AGVQHIALNTD------DIVRTVRALRARGVEFLD 265 (353)
T ss_pred CCccEEEEEcC------CHHHHHHHHHHcCCccCc
Confidence 46889999987 699999999999999865
No 91
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.71 E-value=1.5 Score=25.75 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=37.0
Q ss_pred ecChhhccccHHHHHHHHHHcCceEEeeeeCCC---CeeEEEEeCCCCCeEE
Q 036856 13 GMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG---KVKQVFFFDPDGNGLE 61 (68)
Q Consensus 13 ~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~---~~~QiF~~DPDGn~IE 61 (68)
.+...++.-=|.....-|.+.|+.+..-.+.-. -.--+|+.|++|++|+
T Consensus 5 ev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 5 KVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred EEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 444556666688899999999999977666542 2556899999999874
No 92
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=89.35 E-value=1.3 Score=27.67 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
+-+.++++.+.|++.||++...++-...-|.|+|.=.+|..+
T Consensus 62 G~rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 62 GERNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 356789999999999999999998888889999987777554
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=88.62 E-value=0.67 Score=35.04 Aligned_cols=47 Identities=15% Similarity=-0.106 Sum_probs=32.5
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
++-+.+++.+++-.+.|-.-....++.+- +-=|.||||+.||+.+..
T Consensus 309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf--~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 309 ECEHDFVRFLRRWEMLGGELGEQADGHFP--LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCcccccC--cceeECCCCCEEEEEEEe
Confidence 34566788888877777644333333333 667899999999998764
No 94
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=87.25 E-value=0.6 Score=35.39 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=25.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.|||+||..+ .+-+++++|+++|+++-.
T Consensus 245 GIQHIA~~T~------dI~~tv~~lr~rG~~fl~ 272 (363)
T COG3185 245 GIQHIAFGTD------DIYATVAALRERGVKFLP 272 (363)
T ss_pred cceEEEeccc------HHHHHHHHHHHcCCccCC
Confidence 6999999977 688999999999999855
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=86.18 E-value=0.81 Score=34.76 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=25.3
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHc----CceEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEK----GIQTFQ 39 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~----GI~~~~ 39 (68)
.-|||+||.++ .+.+++++|+++ |+++-.
T Consensus 261 ~GIQHIAl~td------DI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 261 PGLQHLALKSD------DIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred CCeeEEEeecC------CHHHHHHHHHhccccCCeecCC
Confidence 46999999988 689999999998 999855
No 96
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=86.15 E-value=2.1 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=35.5
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
+-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus 112 G~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 112 GLENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 46789999999999999999999888778999988777754
No 97
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=85.65 E-value=6 Score=26.35 Aligned_cols=57 Identities=9% Similarity=0.087 Sum_probs=42.3
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeC--CCCeeEEEEeCCCC-CeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLP--DGKVKQVFFFDPDG-NGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p--~~~~~QiF~~DPDG-n~IEL~f~~ 66 (68)
.|-|+++-|+ ...++.+++..++ .|.+.... ..+ .++.+...+..|+| ..|+|+.+.
T Consensus 3 ~iDHv~i~V~----~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVP----DGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecC----hhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 5789999998 6679999999866 79987443 333 35678888888865 568888643
No 98
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=85.11 E-value=2.6 Score=28.30 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
+-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus 110 G~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 110 GNRNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 36789999999999999999989888777899887666654
No 99
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=84.24 E-value=2.9 Score=28.02 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
+-+..+++.+.|++.||++...++-...-|.++|.--+|..+
T Consensus 103 G~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 103 GARNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 467899999999999999999888887778998877777543
No 100
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=83.50 E-value=3.3 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
+-+..+++.+.|++.||++...++-...-|.|+|.--+|..
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 47789999999999999999988888777888887666654
No 101
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=83.09 E-value=8 Score=23.37 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=37.5
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEee-eeC-----------CCCeeEEEEeCCCC-CeEEEeee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR-SLP-----------DGKVKQVFFFDPDG-NGLEVASR 65 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~-~~p-----------~~~~~QiF~~DPDG-n~IEL~f~ 65 (68)
.+.|+++-++ .++++++...+.|...... ..+ ..+.+.+++..|+| ..|||...
T Consensus 3 ~i~Hi~i~v~------Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 3 RMDNVGIVVR------DLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeeEEEEeC------CHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 4678888877 5889999988888876432 111 12356678887776 47898764
No 102
>PRK14707 hypothetical protein; Provisional
Probab=82.52 E-value=4 Score=37.56 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=43.7
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeeeCCC------CeeEEEEeCCCCCeEEEeeec
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG------KVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~------~~~QiF~~DPDGn~IEL~f~~ 66 (68)
|++..|..+=......++..|.++|+.......-+. +--.+-+.||+|..+|++|.-
T Consensus 2345 YTVVLpp~~Fva~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFHT 2407 (2710)
T PRK14707 2345 YSVVLEPQGFTAGLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFHT 2407 (2710)
T ss_pred EEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEecc
Confidence 678888777788889999999999999866443321 122345699999999999864
No 103
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=82.42 E-value=10 Score=24.22 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=39.5
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee---e----------------eCCCCeeEEEEeCCCCCeEEEee
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR---S----------------LPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~---~----------------~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
-.|.|+++.++ .|+.+++..++ .|.++... . .++.+.+..|+..++|..|||..
T Consensus 3 ~~i~Hv~i~V~------Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~ 76 (162)
T TIGR03645 3 RTFSHIGISVP------DLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFE 76 (162)
T ss_pred ceEEEEEEEeC------CHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEe
Confidence 46889998877 68899988877 68766311 0 11233667788888899999986
Q ss_pred ec
Q 036856 65 RR 66 (68)
Q Consensus 65 ~~ 66 (68)
..
T Consensus 77 ~~ 78 (162)
T TIGR03645 77 FK 78 (162)
T ss_pred cc
Confidence 54
No 104
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=82.16 E-value=4.1 Score=28.02 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
|-++.+++.+.|++.||++...++-...-|.++|.--+|..+
T Consensus 110 G~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 110 GEQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 467899999999999999999998887779999988888764
No 105
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=81.94 E-value=4.2 Score=27.13 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
+-+..+++.+.|++.||++...++-...-|.++|.--+|..
T Consensus 105 G~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 105 GERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 35789999999999999999988887777888887777754
No 106
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=81.75 E-value=4.1 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
|-+.++++.+.|++.||++...++-...-|.|.|.--+|..
T Consensus 125 G~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 125 GERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 47789999999999999999999888777999887766654
No 107
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=81.31 E-value=4.3 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.1
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
=|-+..+++.+.|++.||++...++-...-|.|.|.--+|..+
T Consensus 112 IG~rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 112 IGQANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 3567899999999999999999888887778898877777654
No 108
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=80.50 E-value=8.3 Score=21.81 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHH-cCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 21 QFLSFGCFLLVE-KGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 21 ~~l~~~~~~L~~-~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
..++++.+..++ .|..+.....+..+...+++.+|++..++|.
T Consensus 7 ~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 50 (119)
T cd07263 7 DDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLV 50 (119)
T ss_pred CCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEE
Confidence 368888988887 7998865543334456677777765334443
No 109
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=80.15 E-value=4.8 Score=28.29 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=34.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
|-++.+++.+.|++.||++...++-...-|.|+|.--+|..
T Consensus 137 G~rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 137 GEKNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 46788999999999999999999888777889887666643
No 110
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=79.82 E-value=5.3 Score=22.78 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.8
Q ss_pred EecChhhccccHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCC
Q 036856 12 FGMSEAESLQFLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDG 57 (68)
Q Consensus 12 ~~~~~~~~l~~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDG 57 (68)
|.++..+| -|..++..++++||.... ++.+.......|+-|=+|
T Consensus 5 f~l~~~pG--~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 5 FSLKEEVG--ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEeCCCCc--HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 44443333 399999999999999955 455556677888888776
No 111
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=78.02 E-value=13 Score=22.54 Aligned_cols=57 Identities=19% Similarity=0.092 Sum_probs=35.6
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC---------CCeeEEEEeCCCCCeEEEe
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD---------GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~---------~~~~QiF~~DPDGn~IEL~ 63 (68)
+.-+++..++-..-...++..+.++++|+++.....+. .++.+.|+-|++|+.+...
T Consensus 57 ~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 57 LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred eEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 45555554422212336677778888999874322121 3467899999999887654
No 112
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=77.74 E-value=5.3 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCeEEEeeecCC
Q 036856 48 KQVFFFDPDGNGLEVASRRDE 68 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f~~~~ 68 (68)
=.....||||..+.+...++|
T Consensus 29 GsY~y~~pdG~~~~V~Y~Ad~ 49 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVTYVADE 49 (52)
T ss_pred EEEEEECCCCCEEEEEEECCC
Confidence 357889999999999987764
No 113
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=77.63 E-value=11 Score=21.74 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.6
Q ss_pred eeeEEEecChhhccccHHHHHHHHHH-cCceEEeeeeC--CCCeeEEEEeCCCCCeEEEeeec
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQRSLP--DGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~~~p--~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
|.|+++.++ .++++.+.+.+ .|......... ..+.+.+|+.. +|..++|..+.
T Consensus 1 ~~hv~l~v~------d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVP------DLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeC------CHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEEC
Confidence 468888776 58888888887 78888554332 23445566664 67778887653
No 114
>PHA02754 hypothetical protein; Provisional
Probab=77.26 E-value=7.3 Score=22.85 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+.+.+...+|.++||=+.....-...--.+-+--.||.+|||..
T Consensus 18 e~MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~ 61 (67)
T PHA02754 18 EAMRELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSE 61 (67)
T ss_pred HHHHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEe
Confidence 34666778999999988664443332244666678999999874
No 115
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=77.07 E-value=8.6 Score=24.81 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=29.0
Q ss_pred eeeEEEecChhhccccHHHHHHHH-HHcCceEEee-eeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLL-VEKGIQTFQR-SLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L-~~~GI~~~~~-~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
|-|+-+.++ .|+++.+++ ++.|..+... ..+..+++...+.=+|| -|||....
T Consensus 1 lDH~v~~v~------dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVR------DLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-T------TGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES
T ss_pred CCEEEEEcC------CHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeC
Confidence 346777666 689999999 8889999654 55665666655555888 99998753
No 116
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=75.44 E-value=19 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.3
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.++.|++|.++ .++++.++|+++|+.+..
T Consensus 71 ~gv~~iaf~V~------Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 71 DGVKDVAFRVD------DAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred CceEEEEEEEC------CHHHHHHHHHHCCCEecc
Confidence 46788999887 588999999999999843
No 117
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=75.17 E-value=8.1 Score=27.64 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
|-+..+++.+.|++.||++...++-...-|.|+|.--+|..
T Consensus 123 G~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 123 GDRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 46789999999999999999989888777888887777654
No 118
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=74.62 E-value=15 Score=25.12 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+..++.|++.||+.+...........+.+.|++|....+..
T Consensus 64 ~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~~ 104 (304)
T TIGR03828 64 DFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLNG 104 (304)
T ss_pred HHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEEC
Confidence 56789999999998654333323345778888997766543
No 119
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.87 E-value=15 Score=21.68 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCC--C-eeEEEEeCCCCCeEE
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDG--K-VKQVFFFDPDGNGLE 61 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~--~-~~QiF~~DPDGn~IE 61 (68)
-=|......|.+.|+.+..-.+... . .-.+|+.|.+|.+|.
T Consensus 13 GLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 13 KLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred cHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 3477788899999999977655542 2 344788899999874
No 120
>PRK10148 hypothetical protein; Provisional
Probab=73.75 E-value=11 Score=24.38 Aligned_cols=45 Identities=9% Similarity=-0.245 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 21 QFLSFGCFLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.++...+.|.+-|-.... ...+++ -+.-.+.||-|+.|.|+...
T Consensus 97 ee~~~~~~aLa~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 97 EEGKRWFDNLAANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred HHHHHHHHHhhCCCEEEecchhcchh-hccEEEECCCCCEEEEEecC
Confidence 3444566777644433322 233444 37789999999999999763
No 121
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=73.31 E-value=15 Score=20.99 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=35.8
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHH-cCceEEeee-eCCCCeeEEEEeCCCCCeEEEee
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQRS-LPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~~-~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.|+.+.++ .++++.+..++ .|..+.... .+......+.+..+++..|||..
T Consensus 3 ~~~hi~l~v~------d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICS------DYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcC------CHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 4678888876 58888888875 799886543 23323344556666777888764
No 122
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=73.25 E-value=8.9 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred hhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
.=+-+..+++.+.|++.||++-..+.-...-|.|+|+--+|-.+
T Consensus 110 ~IG~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 110 KIGERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hhhhHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcEE
Confidence 34578889999999999999988877776668888887777654
No 123
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=72.13 E-value=16 Score=25.16 Aligned_cols=36 Identities=17% Similarity=-0.051 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDG 57 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDG 57 (68)
.|......++..||.|....... ++...|||.=.|-
T Consensus 43 ~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~Da 80 (204)
T PF12687_consen 43 DLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKDA 80 (204)
T ss_pred hHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCcH
Confidence 59999999999999997766443 3478999987664
No 124
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=72.09 E-value=18 Score=24.80 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+...+.|++.||+.............+++.|++|....+..
T Consensus 64 ~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~ 104 (303)
T TIGR03168 64 EFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNE 104 (303)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeC
Confidence 55778999999998654443333356777889998776654
No 125
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=72.04 E-value=12 Score=25.12 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
-.+++.+.+.|.+.|+..... ...++.|.+.++|..|||+..
T Consensus 103 ~~d~~~a~~~L~~~Gy~~~~~----~~~~~~~~~~~~~~~idlH~~ 144 (249)
T PF14907_consen 103 PEDLERAVELLEELGYRIESP----SEHHWVYSHEPKGISIDLHWR 144 (249)
T ss_pred CCcHHHHHHHHHHcCCEeccC----CCcceEEEecCCCEEEEEEec
Confidence 356899999999999987543 444667777799999999864
No 126
>PF14930 Qn_am_d_aII: Quinohemoprotein amine dehydrogenase, alpha subunit domain II; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=70.66 E-value=8 Score=24.75 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=19.1
Q ss_pred CceEEee-eeCCCCeeEEEEeCCCCCeEE
Q 036856 34 GIQTFQR-SLPDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 34 GI~~~~~-~~p~~~~~QiF~~DPDGn~IE 61 (68)
|.+++.. .+-...+||||-.+|||+.++
T Consensus 59 GyEWRasl~~g~~~~RQV~a~~~dg~~l~ 87 (108)
T PF14930_consen 59 GYEWRASLKIGGVKMRQVFALSEDGGSLS 87 (108)
T ss_dssp TTEEEEEEEETTEEEEEEEEEE--TTEEE
T ss_pred ccEEEEEEeeCCEEhhhEEEeeccCCcee
Confidence 5556554 334567999999999999886
No 127
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=69.83 E-value=7.5 Score=27.62 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=31.4
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
|.+-|.||.||+.. |...+..-.+.|+++.-+-+++++
T Consensus 91 g~~vFVSfSMP~~s----Lk~Ll~qa~~~G~p~VlRG~~~ns 128 (212)
T PRK13730 91 GALYFVSFSIPEEG----LKRMLGETRHYGIPATLRGMVNND 128 (212)
T ss_pred ceEEEEEcCCCHHH----HHHHHHHHHHhCCcEEEeCCCCCC
Confidence 56789999999555 999999999999999777666644
No 128
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=68.62 E-value=9.1 Score=23.90 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=26.7
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
=|.||.||+.. |...++...+.|+.+--+-+++++
T Consensus 2 iFvS~SMP~~~----L~~l~~~a~~~~~~~V~RG~~~g~ 36 (113)
T PF09673_consen 2 IFVSFSMPDAS----LRNLLKQAERAGVVVVFRGFPDGS 36 (113)
T ss_pred EEEECCCCHHH----HHHHHHHHHhCCcEEEEECCCCCC
Confidence 37899999555 888888888889998766666543
No 129
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=68.41 E-value=19 Score=26.64 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHc-CceEEeeeeCCC-CeeEEEEeCCCCCeEEEe
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEK-GIQTFQRSLPDG-KVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~-GI~~~~~~~p~~-~~~QiF~~DPDGn~IEL~ 63 (68)
-.-++|-+|+.+ +.-|..+++..... +-++..-+.|.. .+.-+-+.||||..|-+.
T Consensus 211 ~griafaip~d~-~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfV 268 (299)
T KOG2943|consen 211 FGRIAFAIPTDD-LPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFV 268 (299)
T ss_pred ceeEEEeccccc-cccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEe
Confidence 345788888544 44444444333211 344444445654 355578999999877554
No 130
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=68.20 E-value=7.1 Score=25.39 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=28.4
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
+-|.||.|| -+-|...++...+.|+++--+-+++++
T Consensus 2 ~vFvS~SMP----~~~Lk~l~~~a~~~g~~~VlRG~~~~~ 37 (130)
T TIGR02742 2 MVFVSFSMP----EPLLKQLLDQAEALGAPLVIRGLLDNG 37 (130)
T ss_pred EEEEEcCCC----HHHHHHHHHHHHHhCCeEEEeCCCCCC
Confidence 358999999 444899999999999988776666544
No 131
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=68.09 E-value=17 Score=26.71 Aligned_cols=56 Identities=25% Similarity=0.317 Sum_probs=34.6
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEE---e--eeeCCCCeeE---------EEEeCCCCCeE
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF---Q--RSLPDGKVKQ---------VFFFDPDGNGL 60 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~---~--~~~p~~~~~Q---------iF~~DPDGn~I 60 (68)
-.+-|+++.+.-......++++-+.|+++|++.. . +.-|.+.++| +-|.|.||-.+
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lLrQtS~~A~~~~v~F~d~~g~~~ 252 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLLRQTSTMADEEEVTFADGDGSLV 252 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B--TTSSSEECCCCSEEEEEBEEEEEEEEETTETS-EC
T ss_pred cccceeeceeecccccccHHHHHHHHHHcCCCccccCCceEECCCCCEEEEeeccceeEEEEecCCCcee
Confidence 3578999999766667789999999999999997 3 2334566666 44566666333
No 132
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=67.47 E-value=35 Score=23.28 Aligned_cols=41 Identities=7% Similarity=-0.081 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCceEEeee-eCC-CCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRS-LPD-GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~-~p~-~~~~QiF~~DPDGn~IEL~f 64 (68)
+..+++|++.||...... .+. .+...+++.|++|..--+..
T Consensus 66 ~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~ 108 (290)
T cd01939 66 ESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVN 108 (290)
T ss_pred HHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEe
Confidence 456899999999986643 333 34556888899887655443
No 133
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=67.27 E-value=10 Score=25.89 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+=.+.+++.|++.|+++.. .+.|++++.+++ +.|++.+
T Consensus 9 Rl~~~t~~ll~~aG~~~~~-----~~~R~l~~~~~~-~~i~~~~ 46 (182)
T TIGR00070 9 RLLEDTLKLLEKAGLKVSR-----EDSRKLIARDPD-EGIEFLL 46 (182)
T ss_pred ccHHHHHHHHHHcCCCCCC-----CCCcceEeEcCC-CCEEEEE
Confidence 3367899999999998855 223778888887 5567654
No 134
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=66.68 E-value=20 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeE-EEEeCCCCCeEEEeee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQ-VFFFDPDGNGLEVASR 65 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~Q-iF~~DPDGn~IEL~f~ 65 (68)
+..++.|++.||+.+....+.....+ +-+.|++|..-.+...
T Consensus 65 ~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~ 107 (289)
T cd01944 65 DQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISIS 107 (289)
T ss_pred HHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeC
Confidence 44689999999999764444332333 4566888887665543
No 135
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=66.40 E-value=8.6 Score=23.12 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=20.9
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
-+++|+++.. +.+++.+++|++.|+++..
T Consensus 52 vlvgi~v~~~---~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 52 VLVGIEVPDA---EDLEELIERLKALGYPYED 80 (91)
T ss_dssp EEEEEE-SST---HHHHHHHHHHTSSS-EEEC
T ss_pred EEEEEEeCCH---HHHHHHHHHHHHcCCCeEE
Confidence 4677777743 3489999999999999864
No 136
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=66.12 E-value=30 Score=21.69 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCC---CCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPD---GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~---~~~~QiF~~DPDGn~IEL~ 63 (68)
+.+...+..+|+++| .+.....+. .+.--++..|+||..++..
T Consensus 23 ik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~ 68 (109)
T PF06923_consen 23 IKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAE 68 (109)
T ss_pred HHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEE
Confidence 345677899999999 443333332 5677799999999998864
No 137
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=65.10 E-value=6.8 Score=24.61 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=27.6
Q ss_pred cccceeeEEEecChhhccccHHHHHHHHHHcCc
Q 036856 3 EAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGI 35 (68)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI 35 (68)
|..+-+.+|+.+|...++..+...+.++++.|+
T Consensus 82 E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~ 114 (117)
T PF14085_consen 82 EGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGW 114 (117)
T ss_pred EccCCCEEEEEECCCCCHHHHHHHHHhhhhcCc
Confidence 344458899999999999999999999998875
No 138
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.61 E-value=25 Score=20.37 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn 58 (68)
.|..++..++++||.... ++.....+...|+-|=+|.
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 499999999999999954 4444456667888887765
No 139
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=63.44 E-value=22 Score=22.57 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDP 55 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DP 55 (68)
-.....++++|+.+||+|...++..+ .--+||=+|
T Consensus 24 ~~~~~~~~~rL~~~~I~y~iq~v~~~-~iNlFFG~~ 58 (101)
T PF09633_consen 24 KRYEEFAIARLERQGIDYFIQPVGNG-KINLFFGRK 58 (101)
T ss_dssp GGGHHHHHHHHHHTT--EEEEE-TSS-EEEEEEE-H
T ss_pred HhhHHHHHHHHHHCCCCEEEEEcCCC-CEEEEECCH
Confidence 45688899999999999988776443 355776554
No 140
>PHA02087 hypothetical protein
Probab=62.89 E-value=7.8 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.4
Q ss_pred CCeeEEEEeCCCCCeEEEe
Q 036856 45 GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~ 63 (68)
....|..+.|.||++|||-
T Consensus 42 nk~v~y~lvdsdg~~ielp 60 (83)
T PHA02087 42 NKLVQYMLVDSDGVKIELP 60 (83)
T ss_pred ccceeEEEEcCCCcEEECC
Confidence 3468899999999999984
No 141
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=61.94 E-value=15 Score=23.30 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=19.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++.-...++++|+++||+|+....
T Consensus 10 ~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 10 NCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEe
Confidence 456678999999999999976543
No 142
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=60.55 E-value=11 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeC
Q 036856 22 FLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFD 54 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~D 54 (68)
.+..++++|+++|++|.+..+ |+.+....|+-|
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~~dD 99 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGKPWCGHDGFYVDD 99 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCCCcCCCCCceecc
Confidence 356889999999999966433 555555566655
No 143
>PF14090 HTH_39: Helix-turn-helix domain
Probab=59.97 E-value=30 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.002 Sum_probs=19.2
Q ss_pred hccccHHHHHHHHHHcCceEEeee
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~ 41 (68)
-++..+.+-+.+|+++|.++....
T Consensus 25 ~gi~~~~aRI~eLR~~G~~I~t~~ 48 (70)
T PF14090_consen 25 LGIMRLAARISELRKKGYPIVTEW 48 (70)
T ss_pred cCCCCHHHHHHHHHHcCCeeeEEE
Confidence 346678889999999999996543
No 144
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.42 E-value=14 Score=19.39 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.9
Q ss_pred ccccHHHHHHHHHHcCceEE
Q 036856 19 SLQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~ 38 (68)
...+++..++.|+++|+++.
T Consensus 53 ~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 53 GAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CHHHHHHHHHHHHHcCCEEe
Confidence 35778999999999999874
No 145
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.34 E-value=30 Score=20.85 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=31.9
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCC
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn 58 (68)
-|.++..+| -|..++..++++||.... ++.....+...|+-|=+|.
T Consensus 18 if~l~~~pG--sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 18 IFSLKEEVG--ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEEcCCCCc--HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 344554344 499999999999999954 3444455667888887775
No 146
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=59.22 E-value=16 Score=21.86 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCee-EEEEeCCCCCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVK-QVFFFDPDGNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~-QiF~~DPDGn~IEL~f~ 65 (68)
..+.-..+.+++.|++..-..+-..+.. -=.|.|++|..|...|.
T Consensus 15 ~t~~yL~~~a~qaG~~~~~~~i~~l~~~~~g~~~d~~~~~I~~lfk 60 (97)
T PF03738_consen 15 GTVQYLMDTARQAGLDTRFIPIEDLGWDEDGRFYDGDGRPIDVLFK 60 (97)
T ss_dssp HHHHHHHHHHHHTT-EEEEETTTTEEE-TTS-EEETTS-B--EEEE
T ss_pred HHHHHHHHHHHHCCCCeEEechHheEECCCCcEECCCCCChheehh
Confidence 3344456778888999765444333333 33668999999998875
No 147
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=59.01 E-value=30 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCeeEEEEeCCCCCeEEEee
Q 036856 45 GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~f 64 (68)
++.--.|+.||||.+.+|..
T Consensus 123 ~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 123 SGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred cceEEEEEECCCCcEEEEec
Confidence 45566899999999999984
No 148
>PF15067 FAM124: FAM124 family
Probab=58.98 E-value=5.3 Score=28.76 Aligned_cols=12 Identities=33% Similarity=0.243 Sum_probs=9.8
Q ss_pred EEeCCCCCeEEE
Q 036856 51 FFFDPDGNGLEV 62 (68)
Q Consensus 51 F~~DPDGn~IEL 62 (68)
-..|||||+|=|
T Consensus 224 qT~D~DGNkILL 235 (236)
T PF15067_consen 224 QTEDYDGNKILL 235 (236)
T ss_pred eeeCCCCCEecc
Confidence 358999999865
No 149
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=58.85 E-value=49 Score=22.52 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+..++.|++.||..+..........-+.+.|++|...++.
T Consensus 65 ~~i~~~l~~~gi~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 104 (289)
T cd01164 65 DFFEALLKEEGIPDDFVEVAGETRINVKIKEEDGTETEIN 104 (289)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEEEEEEeCCCCEEEEe
Confidence 5678899999998866443333356677888888766664
No 150
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=58.61 E-value=33 Score=19.62 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=33.9
Q ss_pred eeEEEecChhhccccHHHHHHHHHHc-CceEEeee-eCCCCeeEEEEeCCC---CCeEEEee
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEK-GIQTFQRS-LPDGKVKQVFFFDPD---GNGLEVAS 64 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~-GI~~~~~~-~p~~~~~QiF~~DPD---Gn~IEL~f 64 (68)
.|+++.++ .++++.+..++. |.+..... .+.....-+|+..++ +..|++..
T Consensus 2 ~hv~i~v~------d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd07233 2 LHTMLRVK------DLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTY 57 (121)
T ss_pred eeEEEEec------CcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEe
Confidence 57777766 688999999876 99875433 333344446666665 56788754
No 151
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.84 E-value=15 Score=20.35 Aligned_cols=20 Identities=15% Similarity=-0.209 Sum_probs=16.8
Q ss_pred ccccHHHHHHHHHHcCceEE
Q 036856 19 SLQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~ 38 (68)
+-.+++..++.|+++|+.+.
T Consensus 48 ~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 48 DREDLAELKERLEALGYPYV 67 (68)
T ss_pred CHHHHHHHHHHHHHcCCCcc
Confidence 45789999999999999764
No 152
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=57.53 E-value=15 Score=19.81 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=17.9
Q ss_pred hhhccccHHHHHHHHHHcCceEEe
Q 036856 16 EAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 16 ~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+.+|+.-=+.-+++|++.||+|..
T Consensus 10 elTG~k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 10 ELTGYKRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred HHHCCCCHHHHHHHHHHCCCeeEE
Confidence 345555556678999999999865
No 153
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=56.87 E-value=34 Score=22.83 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
+...+.|++.||+..............++.+++|...
T Consensus 52 ~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~~~g~r~ 88 (264)
T cd01940 52 AHVRSTLKRLGVDISHCRVKEGENAVADVELVDGDRI 88 (264)
T ss_pred HHHHHHHHHcCCChhheEEcCCCCceEEEEecCCceE
Confidence 3468899999999854333222233444667887765
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.19 E-value=16 Score=23.27 Aligned_cols=24 Identities=8% Similarity=-0.132 Sum_probs=20.0
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++.--..++++|+++||+|..+..
T Consensus 10 ~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 10 GCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEec
Confidence 566678999999999999977654
No 155
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.16 E-value=16 Score=22.32 Aligned_cols=25 Identities=12% Similarity=-0.051 Sum_probs=20.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..-..++++|+++|++|....+-
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 8 KCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CCHHHHHHHHHHHHcCCceEEeccc
Confidence 5666788999999999999886653
No 156
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.83 E-value=26 Score=18.90 Aligned_cols=29 Identities=10% Similarity=-0.053 Sum_probs=21.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEE
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~ 38 (68)
..+.+.|++. ....+.+++.|+++|+++.
T Consensus 41 ~~~~v~i~v~----~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 41 DNKILVFRVQ----TMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CeEEEEEEEe----cCCHHHHHHHHHHCCCeee
Confidence 3455677776 2345689999999999874
No 157
>PF09259 Fve: Fungal immunomodulatory protein Fve; InterPro: IPR015339 This entry represents the FIP-Fve (Fungal Immunomodulatory Protein Fve) is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerisation occurs by 3-D domain swapping of the N-terminal helices and is stabilised predominantly by hydrophobic interactions []. ; GO: 0030246 carbohydrate binding, 0002682 regulation of immune system process; PDB: 3KCW_A 1OSY_B 3F3H_B.
Probab=55.44 E-value=16 Score=23.29 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=12.9
Q ss_pred eeCCCCeeEEEEeCCC-CCeEEEe
Q 036856 41 SLPDGKVKQVFFFDPD-GNGLEVA 63 (68)
Q Consensus 41 ~~p~~~~~QiF~~DPD-Gn~IEL~ 63 (68)
.+.++++-|+|+.||| ||.=++.
T Consensus 84 GiADT~TIQV~VvdPdtgnse~~i 107 (111)
T PF09259_consen 84 GIADTNTIQVFVVDPDTGNSEDFI 107 (111)
T ss_dssp -EETTS-EEEEEE-TTTTT--EEE
T ss_pred ccccCceEEEEEEcCCCCCccceE
Confidence 3456778999999997 4433333
No 158
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=55.04 E-value=29 Score=27.30 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=29.6
Q ss_pred hccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL 62 (68)
.|+.+|.++. .|.+.|+++..... +..+-+--=..|+||+..|=
T Consensus 8 aG~AgL~~a~-~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 8 AGLAGLAAAY-ELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred ccHHHHHHHH-HHHhCCCceEEEeccCccCceeeeeecCCCCeeee
Confidence 4677787775 58899999865322 22222444457899999984
No 159
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=54.23 E-value=14 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.003 Sum_probs=20.0
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..-..++++|+++|++|.....
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeeh
Confidence 566677999999999999987654
No 160
>PRK10853 putative reductase; Provisional
Probab=54.19 E-value=17 Score=22.87 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++.--..++++|+++|++|.....
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeeh
Confidence 566678999999999999977543
No 161
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=53.68 E-value=15 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
..+--.+.+.|+++|++++..++|.
T Consensus 11 t~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred HHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 4556677899999999999888876
No 162
>PF07409 GP46: Phage protein GP46; InterPro: IPR010877 This entry is represented by Bacteriophage Mu, Gp46. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=53.61 E-value=57 Score=20.84 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCce--EEee-eeCCCC--eeEEEEeCCCCCeEEEeeec
Q 036856 23 LSFGCFLLVEKGIQ--TFQR-SLPDGK--VKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 23 l~~~~~~L~~~GI~--~~~~-~~p~~~--~~QiF~~DPDGn~IEL~f~~ 66 (68)
.+++++.|.+-|+. +... ..+..+ .-.|-+.+|||+...+.|..
T Consensus 66 a~EAL~wLv~dg~a~~i~V~a~~~~~~~L~l~I~i~~~dG~~~~~~~~~ 114 (116)
T PF07409_consen 66 AEEALQWLVDDGVASSITVTAERPGPGRLALTITITKPDGSTQTFTFSW 114 (116)
T ss_pred HHHHHHHHHhcCceeEEEEEEEEcCCCEEEEEEEEEcCCCCEEEEEEee
Confidence 45678999998874 3221 123322 46688999999998887753
No 163
>PRK09169 hypothetical protein; Validated
Probab=53.41 E-value=36 Score=31.65 Aligned_cols=57 Identities=16% Similarity=-0.019 Sum_probs=42.5
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeeeC----C--CCeeEEEE-eCCCCCeEEEeeec
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP----D--GKVKQVFF-FDPDGNGLEVASRR 66 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p----~--~~~~QiF~-~DPDGn~IEL~f~~ 66 (68)
|++..|..+-..+...++..|.++|........- + -+-..+++ .+|+|..+|++|.-
T Consensus 1954 YtvvLp~~~Fva~~r~iv~~L~~~G~~~Vkv~N~F~~~~~~YkGVNv~l~~s~~g~~fEIQFHT 2017 (2316)
T PRK09169 1954 YSVVLPPQTFVAGYRRILGALDEQGHTRTRVTNHFKKRGPAFKGINVTLDATGEGVRLEIQFHT 2017 (2316)
T ss_pred EEEecCCccHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCccceEEeeecCCCCceEEEEecC
Confidence 6777787777888899999999999998653221 1 12233455 88999999999864
No 164
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=38 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=29.1
Q ss_pred HHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEE
Q 036856 27 CFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 27 ~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IE 61 (68)
.+-.++.|+.+.+.++.+.-.|.+|+.|-+|+.+-
T Consensus 111 ~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y 145 (158)
T COG2077 111 RAFGENYGVLINEGPLAGLLARAVFVLDENGKVTY 145 (158)
T ss_pred hhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEE
Confidence 34568889999888877777899999999999764
No 165
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=52.07 E-value=41 Score=23.05 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCceEEe----------------eeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQ----------------RSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~----------------~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.+..+-|.+.||+++. ...|++.++-+|+.|--|+-+=+.
T Consensus 6 ~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~ 61 (164)
T COG3760 6 AELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVT 61 (164)
T ss_pred HHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEE
Confidence 4567889999999965 345778899999999988765443
No 166
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=51.89 E-value=18 Score=24.81 Aligned_cols=45 Identities=11% Similarity=-0.022 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+.++|..+++.|++.||.+..-.......+...+.+=+|.+|=+.
T Consensus 90 G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l 134 (250)
T PF09587_consen 90 GEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFL 134 (250)
T ss_pred cHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEE
Confidence 456889999999999999977322221122233444467666554
No 167
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.72 E-value=32 Score=20.19 Aligned_cols=27 Identities=15% Similarity=-0.068 Sum_probs=20.5
Q ss_pred eEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+++++++.. +++..+++|++.|+++..
T Consensus 44 lvGi~~~~~----~~~~l~~~l~~~g~~~~d 70 (81)
T cd04907 44 LVGIQVPDA----DLDELKERLDALGYPYQE 70 (81)
T ss_pred EEEEEeChH----HHHHHHHHHHHcCCCeEE
Confidence 445565521 789999999999999865
No 168
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.63 E-value=24 Score=21.58 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=19.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++.--..++++|+++|++|.....
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEec
Confidence 455667899999999999987654
No 169
>PRK12559 transcriptional regulator Spx; Provisional
Probab=51.54 E-value=20 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=20.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
+|..-..++++|+++||+|....+
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~di 32 (131)
T PRK12559 9 SCASCRKAKAWLEENQIDYTEKNI 32 (131)
T ss_pred CChHHHHHHHHHHHcCCCeEEEEe
Confidence 566778899999999999988665
No 170
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=51.33 E-value=19 Score=21.96 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.1
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..-..+++.|+++|++|....+
T Consensus 8 ~C~~crka~~~L~~~~i~~~~~di 31 (105)
T cd03035 8 NCDTVKKARKWLEARGVAYTFHDY 31 (105)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEec
Confidence 566678899999999999987654
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=50.75 E-value=27 Score=18.45 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=19.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++.+=..+.+.|+++|++|....+.
T Consensus 8 ~C~~C~~~~~~L~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 8 GCPYCKKAKEFLDEKGIPYEEVDVD 32 (60)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEEGG
T ss_pred CCcCHHHHHHHHHHcCCeeeEcccc
Confidence 4555677889999999999886553
No 172
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=50.56 E-value=70 Score=21.03 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=26.1
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+..+.++++ -..-++.|-++|..+.....-..+ +-+=..+|.|+.+.|+...
T Consensus 64 l~~ivIkv~-------~~~EIe~LLar~~~~~~l~kg~~g-yAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 64 LNRIVIKVP-------NPKEIEALLARGAQYDRLYKGKNG-YAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp EEEEEEEES-------SHHHHHHHHHC-S--SEEEE-SSS-EEEEEE-TT--EEEEE--S
T ss_pred eeEEEEEcC-------CHHHHHHHHhcccccceeEEcCCc-eEEEEECCCCCEEEEEEcC
Confidence 456777776 223455566666666443333333 5566679999999998654
No 173
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=50.21 E-value=29 Score=18.65 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=23.3
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEE-eeeeCCCCeeEEEE
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTF-QRSLPDGKVKQVFF 52 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~-~~~~p~~~~~QiF~ 52 (68)
|.+++-.-.+-...+..+++|+.+|.+.. .......+...|.+
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~ 48 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV 48 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE
Confidence 33444333344567888999999999865 33334455666665
No 174
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=50.04 E-value=21 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=21.1
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
.....|..++++|++.||.++...-|.
T Consensus 110 ~~~~~l~~~i~~L~~~gIrVSLFidP~ 136 (239)
T PRK05265 110 GQFDKLKPAIARLKDAGIRVSLFIDPD 136 (239)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 446778999999999999998654443
No 175
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.69 E-value=25 Score=22.44 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=20.5
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++.--..++++|+++||+|....+-
T Consensus 9 ~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 9 SCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4566778999999999999887653
No 176
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=49.64 E-value=21 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.4
Q ss_pred CCeeEEEEeCCCCCeEEEe
Q 036856 45 GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~ 63 (68)
.|.+.+|+.|++|+..|+.
T Consensus 26 VG~K~Lfl~d~~g~~~e~~ 44 (120)
T PF05301_consen 26 VGYKKLFLLDERGQHREIE 44 (120)
T ss_pred EeeeeEEEEcCCCCEEEec
Confidence 4679999999999999953
No 177
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=49.51 E-value=27 Score=21.14 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.1
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEee
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~ 40 (68)
|+-+-++.+...-...++++++.|++.|++|+..
T Consensus 3 i~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~ 36 (92)
T PF01910_consen 3 ISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVG 36 (92)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEc
Confidence 4555566644444567899999999999999763
No 178
>PRK10329 glutaredoxin-like protein; Provisional
Probab=49.41 E-value=25 Score=20.39 Aligned_cols=23 Identities=4% Similarity=-0.148 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHcCceEEeeeeCC
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
.=..+.+.|+++||+|....+..
T Consensus 13 ~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 13 QCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred hHHHHHHHHHHCCCceEEEECCC
Confidence 33457889999999998866643
No 179
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=49.15 E-value=41 Score=20.27 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.0
Q ss_pred CCCeeEEEEeCCCCCeEEEeeecC
Q 036856 44 DGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 44 ~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
.++..+|-|+=|||..+|--|...
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~ 25 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQ 25 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCC
Confidence 356788999999999999888754
No 180
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=48.79 E-value=81 Score=21.81 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL~f 64 (68)
+..++.|++.||+......+. +...-..+.|++|....+..
T Consensus 67 ~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~ 108 (309)
T PRK10294 67 EHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVM 108 (309)
T ss_pred HHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEEC
Confidence 446899999999986654433 22222345688887776554
No 181
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=48.72 E-value=47 Score=20.50 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~I 60 (68)
|..++++..||++..+.+-.... |...-..+=+.|-+||.|
T Consensus 9 LnafKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v 53 (85)
T PF10922_consen 9 LNAFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSV 53 (85)
T ss_pred HHHHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEe
Confidence 66789999999998887733222 223345578889999998
No 182
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=48.65 E-value=23 Score=22.45 Aligned_cols=25 Identities=20% Similarity=-0.002 Sum_probs=20.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..-..+++.|+++||+|....+.
T Consensus 9 ~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 9 SCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CChHHHHHHHHHHHcCCCcEEeecc
Confidence 5666788999999999999887653
No 183
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=48.50 E-value=44 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.8
Q ss_pred EEEEeCCCCCeEEEe
Q 036856 49 QVFFFDPDGNGLEVA 63 (68)
Q Consensus 49 QiF~~DPDGn~IEL~ 63 (68)
-.++.|+||+-+|..
T Consensus 235 vtWi~~~dGsWLecD 249 (275)
T PF15499_consen 235 VTWIRDSDGSWLECD 249 (275)
T ss_pred EEEEEcCCCCeEeec
Confidence 368999999999975
No 184
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.19 E-value=45 Score=20.94 Aligned_cols=37 Identities=8% Similarity=-0.145 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn 58 (68)
-|..++..++.+||.... ++.+.......|+.|=+|.
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 499999999999999955 3444455567787776664
No 185
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=48.06 E-value=44 Score=20.15 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=14.6
Q ss_pred HHHHHHHcCceEEeeeeC
Q 036856 26 GCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 26 ~~~~L~~~GI~~~~~~~p 43 (68)
+..-|+.+||+|.+.++.
T Consensus 22 v~~lL~~k~I~f~eiDI~ 39 (92)
T cd03030 22 VLGFLEAKKIEFEEVDIS 39 (92)
T ss_pred HHHHHHHCCCceEEEecC
Confidence 466899999999987764
No 186
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=47.94 E-value=21 Score=18.46 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.5
Q ss_pred eEEEEeCCCCCeEE
Q 036856 48 KQVFFFDPDGNGLE 61 (68)
Q Consensus 48 ~QiF~~DPDGn~IE 61 (68)
+.|+..|++|+.|.
T Consensus 2 k~V~~~d~~~~~i~ 15 (53)
T smart00497 2 KPVYVYDLDGNLIG 15 (53)
T ss_pred ccEEEEeCCCCEEE
Confidence 45888999999883
No 187
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=47.91 E-value=84 Score=21.12 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHH-cCceEEee-eeCCCCeeEEEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQR-SLPDGKVKQVFFF 53 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~~-~~p~~~~~QiF~~ 53 (68)
-+++|.++.|. .|+.+++...+ .|.+...+ ..+..+.+-.|+.
T Consensus 26 ~~~~Ht~i~V~------Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~ 70 (185)
T PLN03042 26 YIMQQTMFRIK------DPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLG 70 (185)
T ss_pred cEEEEEEEeeC------CHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEe
Confidence 36899999987 68899998864 69988554 5566666666653
No 188
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=47.90 E-value=19 Score=24.33 Aligned_cols=44 Identities=14% Similarity=-0.022 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.++|..+++.|++.|+++..............+.+-+|.+|=+.
T Consensus 93 ~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~i 136 (239)
T cd07381 93 EEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFL 136 (239)
T ss_pred hHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEE
Confidence 66788999999999999865432211112233445567776654
No 189
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=47.75 E-value=22 Score=26.00 Aligned_cols=45 Identities=18% Similarity=-0.038 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHcCceEEeeeeC---CCCeeEEEEeCCCCCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLP---DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p---~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
-+++.++++|+++|+.--.+... .-|.--+++.+--|..+||++-
T Consensus 31 gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncE 78 (290)
T TIGR00116 31 GDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSE 78 (290)
T ss_pred CCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecC
Confidence 36899999999999877333222 2344455554445889999863
No 190
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=47.08 E-value=31 Score=21.08 Aligned_cols=24 Identities=25% Similarity=0.027 Sum_probs=20.0
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..-..+++.|+++||+|....+
T Consensus 9 ~C~~c~ka~~~L~~~gi~~~~idi 32 (115)
T cd03032 9 SCSSCRKAKQWLEEHQIPFEERNL 32 (115)
T ss_pred CCHHHHHHHHHHHHCCCceEEEec
Confidence 466678899999999999987665
No 191
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=47.05 E-value=27 Score=21.10 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=17.5
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++.--..++++|+++||+|.....-
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhh
Confidence 4555678999999999999876553
No 192
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=46.94 E-value=25 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.012 Sum_probs=21.8
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
.....|..++++|++.||.++...-|.
T Consensus 107 ~~~~~l~~~i~~l~~~gI~VSLFiDPd 133 (234)
T cd00003 107 GQAEKLKPIIERLKDAGIRVSLFIDPD 133 (234)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 346778999999999999998765554
No 193
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=46.87 E-value=29 Score=28.30 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE--EEeee
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL--EVASR 65 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I--EL~f~ 65 (68)
-+.|++.++|+++.||..-- -|.| .||||+.. +|.|+
T Consensus 333 ~~nl~~l~~ri~~~~~~~Vy--------Lqaf-adp~gdg~~~~lYFp 371 (672)
T PRK14581 333 KENLDKLVQRISDLRVTHVF--------LQAF-SDPKGDGNIRQVYFP 371 (672)
T ss_pred hhhHHHHHHHHHhcCCCEEE--------EEee-eCCCCCCceeeEEec
Confidence 45688889999999886521 3455 88877654 45554
No 194
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=46.42 E-value=3.5 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.1
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeCCCCeeEEE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVF 51 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF 51 (68)
.|-+-|.+.+.+|.++|+++.+-+++.+...+++
T Consensus 57 ~G~~ALaELv~wl~~~G~~f~EaVl~p~e~~~ll 90 (113)
T PF11432_consen 57 EGERALAELVRWLQERGARFYEAVLSPSEFAALL 90 (113)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEEE-GGGHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCchhheecCHHHHHHHH
Confidence 4556689999999999999999888876554444
No 195
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=46.37 E-value=32 Score=25.13 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCC
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPD 56 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPD 56 (68)
=++..+.|.+.||.+...+.-.+=--|+|.+||-
T Consensus 40 h~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~ 73 (267)
T COG1834 40 HEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHCCCEEEEcCcccCCCcceEeccce
Confidence 3456788999999997654222223789999983
No 196
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=46.24 E-value=34 Score=21.05 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=19.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++.--..++++|+++|++|.....
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di 31 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKY 31 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEec
Confidence 466678899999999999977554
No 197
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=46.16 E-value=28 Score=25.07 Aligned_cols=26 Identities=15% Similarity=-0.161 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
....|..++++|+++||.++...-|.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP~ 133 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFIDAD 133 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35678899999999999998655444
No 198
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=46.12 E-value=82 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCceEEee-eeCC--CCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQR-SLPD--GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~-~~p~--~~~~QiF~~DPDGn~IEL~ 63 (68)
+..++.|++.||++... ..+. ++.. +.+.|++|...-+.
T Consensus 66 ~~i~~~l~~~gi~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~ 107 (279)
T cd01942 66 RLYLEELREEGVDTSHVRVVDEDSTGVA-FILTDGDDNQIAYF 107 (279)
T ss_pred HHHHHHHHHcCCCccceEEcCCCCcceE-EEEEcCCCCEEEEe
Confidence 35688999999998654 3333 3433 45568888877654
No 199
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=45.75 E-value=23 Score=26.29 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCC---CCeeEEEEeCCC---CCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPD---GKVKQVFFFDPD---GNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~---~~~~QiF~~DPD---Gn~IEL~f~ 65 (68)
-+++.++++|+++|+.=-.+...+ -|+- +--.|+| |..+|+|+-
T Consensus 32 Gd~EkAie~LR~kG~akA~KKa~R~AaEGli-~~~~~~~~~~av~vEvN~E 81 (296)
T COG0264 32 GDIEKAIEWLREKGIAKAAKKAGRIAAEGLI-AAKVDGDGKKAVLVEVNCE 81 (296)
T ss_pred CCHHHHHHHHHHhchHhhhhhcCcchhcceE-EEEEcCCCcEEEEEEEecc
Confidence 358899999999999875543332 2333 3344666 889999863
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.68 E-value=19 Score=20.87 Aligned_cols=20 Identities=15% Similarity=-0.086 Sum_probs=17.4
Q ss_pred cccHHHHHHHHHHcCceEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~ 39 (68)
-++++.+++.|+++|+.+..
T Consensus 52 ~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 52 AEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred HHHHHHHHHHHHHCCCCeEE
Confidence 56799999999999999854
No 201
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=45.64 E-value=20 Score=16.42 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=8.4
Q ss_pred EEEEeCCCCCeE
Q 036856 49 QVFFFDPDGNGL 60 (68)
Q Consensus 49 QiF~~DPDGn~I 60 (68)
.-.+.|++|+.+
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 356789999986
No 202
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=45.57 E-value=51 Score=25.15 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=38.1
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHH-cCceEEe-eee-----CCCCeeEEEEeCCCC-CeEEEeeec
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVE-KGIQTFQ-RSL-----PDGKVKQVFFFDPDG-NGLEVASRR 66 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~-~GI~~~~-~~~-----p~~~~~QiF~~DPDG-n~IEL~f~~ 66 (68)
.|-|++.-++ .|+.++.+.++ .|..... .+. ...+++...+.+|+| .+|+|+.+.
T Consensus 180 ~IDHi~iaV~------~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~ 242 (398)
T PLN02875 180 RLDHAVGNVP------NLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPT 242 (398)
T ss_pred eeCcceechh------hHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCC
Confidence 3667777665 57888888875 5765432 122 234679999999997 899998763
No 203
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=45.56 E-value=26 Score=19.73 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=22.3
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+++.+-..++.. -..++++++.|+++|+.++.
T Consensus 44 ~~G~l~l~l~g~--~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 44 PFGILILELPGD--DEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEEEEEEEEES---HHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEEEEEECC--HHHHHHHHHHHHHCCCeEEE
Confidence 455555666411 23489999999999999853
No 204
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=45.50 E-value=9.3 Score=24.15 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEecChhhccccHHHHHHHHHHcCc
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGI 35 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI 35 (68)
||.++|++=++||+++.+-|.+-|.
T Consensus 40 SFPltE~eY~~hL~~va~~L~~wG~ 64 (99)
T PF11267_consen 40 SFPLTEEEYLEHLDAVAEYLNAWGQ 64 (99)
T ss_dssp T-SS-HHHHHHHHHHHHHHHHHHS-
T ss_pred CcCCCHHHHHHHHHHHHHHHHHccc
Confidence 6889999999999999999998886
No 205
>PHA02097 hypothetical protein
Probab=45.48 E-value=19 Score=20.58 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.5
Q ss_pred EeCCCCCeEEEe
Q 036856 52 FFDPDGNGLEVA 63 (68)
Q Consensus 52 ~~DPDGn~IEL~ 63 (68)
+.||+||..||+
T Consensus 46 v~~~n~ng~~~~ 57 (59)
T PHA02097 46 VKDANYNGFELV 57 (59)
T ss_pred EecCCCCcEEEe
Confidence 689999999986
No 206
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=45.18 E-value=20 Score=19.81 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=12.8
Q ss_pred EEEeCCCCCeEEEeee
Q 036856 50 VFFFDPDGNGLEVASR 65 (68)
Q Consensus 50 iF~~DPDGn~IEL~f~ 65 (68)
+++.|+||+.+..|..
T Consensus 8 i~v~D~~~~i~~~N~~ 23 (110)
T PF08448_consen 8 IFVIDPDGRIVYANQA 23 (110)
T ss_dssp EEEEETTSBEEEE-HH
T ss_pred eEEECCCCEEEEEHHH
Confidence 7888999999998754
No 207
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.17 E-value=43 Score=23.86 Aligned_cols=39 Identities=15% Similarity=-0.036 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCC----------CeeEEEEeCCCC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDG----------KVKQVFFFDPDG 57 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~----------~~~QiF~~DPDG 57 (68)
..-++++++++|+++|+.+-.-..|.. ..+..|+++++|
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g 116 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSG 116 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCC
Confidence 466789999999999999966544431 236689999998
No 208
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=44.94 E-value=40 Score=19.62 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=25.0
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeee
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
|+=+.|..+++..=..+.+.|+++|++|....+
T Consensus 13 f~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv 45 (90)
T cd03028 13 FMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDI 45 (90)
T ss_pred EEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEc
Confidence 333455666777778899999999999988654
No 209
>PRK10824 glutaredoxin-4; Provisional
Probab=44.83 E-value=61 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=25.0
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeee
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
|+=+.|+.+.+-.=..+.+-|++.|++|....+
T Consensus 20 f~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi 52 (115)
T PRK10824 20 YMKGSPKLPSCGFSAQAVQALSACGERFAYVDI 52 (115)
T ss_pred EECCCCCCCCCchHHHHHHHHHHcCCCceEEEe
Confidence 444556777777778899999999999976444
No 210
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=44.50 E-value=36 Score=18.72 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHcCceEEeeeeC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
+..=..+.+.|+++||+|....+.
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECC
Confidence 444567788899999999876554
No 211
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=44.42 E-value=26 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHcCceEEeeee---CCCCeeEEEEe--CCCCCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSL---PDGKVKQVFFF--DPDGNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~---p~~~~~QiF~~--DPDGn~IEL~f~ 65 (68)
..++.++++|+++|+.--.+.. ...+.-.++++ .--|..|||++.
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~E 80 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCE 80 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEecc
Confidence 4588999999999988733222 22445555665 223678888864
No 212
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=43.99 E-value=32 Score=24.72 Aligned_cols=26 Identities=23% Similarity=0.033 Sum_probs=19.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
....|..++++|++.||.++...-|.
T Consensus 109 ~~~~l~~~i~~L~~~gIrvSLFiDP~ 134 (239)
T PF03740_consen 109 NRDRLKPVIKRLKDAGIRVSLFIDPD 134 (239)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45789999999999999998765554
No 213
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=43.82 E-value=43 Score=20.71 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=23.5
Q ss_pred cceeeEEEecChhhccc-cHHHHHHHHHHcCceEEeee
Q 036856 5 GSLQFFSFGMSEAESLQ-FLSFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~-~l~~~~~~L~~~GI~~~~~~ 41 (68)
+-||=++|-.+...=++ .+......|+.+|+.++...
T Consensus 22 ~kIqGItfslDg~efl~eri~~L~~~L~kRgv~v~L~~ 59 (86)
T PF09153_consen 22 EKIQGITFSLDGEEFLRERISRLIEFLKKRGVSVSLDE 59 (86)
T ss_dssp SSEEEEEEESSHHHHHH-HHHHHHHHHHHTT------B
T ss_pred CceeeEEEEeccHHHHHHHHHHHHHHHHhcCceeEEee
Confidence 34888999988555555 56677899999999996544
No 214
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=43.82 E-value=37 Score=20.16 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=19.5
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..=..+.+.|+++||+|....+-
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 8 NCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEeec
Confidence 3555677899999999999886653
No 215
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=43.65 E-value=23 Score=24.07 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=27.2
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
|.++|..+++.|++.|+++..-...........+.+-+|.+|=+.
T Consensus 88 G~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~i 132 (239)
T smart00854 88 GEEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALL 132 (239)
T ss_pred chHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEE
Confidence 356788999999999999965322211111223445566666554
No 216
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=43.64 E-value=78 Score=19.56 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.9
Q ss_pred eEEEEeCCCCCeEEEee
Q 036856 48 KQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f 64 (68)
+..|+-||||..+....
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 46799999998887753
No 217
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=43.63 E-value=34 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..=..+.+.|+++||+|....+
T Consensus 10 ~C~~C~ka~~~L~~~gi~~~~~di 33 (73)
T cd03027 10 GCEDCTAVRLFLREKGLPYVEINI 33 (73)
T ss_pred CChhHHHHHHHHHHCCCceEEEEC
Confidence 345556788999999999987554
No 218
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=43.24 E-value=39 Score=18.67 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=21.0
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
.++.+++.++.+.++ + ..| .+++.+| +|||..|
T Consensus 7 ~~~s~e~lL~~it~~-v-----~l~-~gVr~ly--t~~G~~V 39 (60)
T PF03607_consen 7 RFRSFEQLLDEITEK-V-----QLP-SGVRKLY--TLDGKRV 39 (60)
T ss_dssp THSSHHHHHHHHHHS-S-----SST-TS-SEEE--ETTSSEE
T ss_pred hhcCHHHHHHHHHhh-c-----CCC-cccceEE--CCCCCEe
Confidence 356788888888882 1 123 3478777 7888665
No 219
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=43.14 E-value=33 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCceEEeeeeCCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
.++.++|+++||++.-+.+|..+
T Consensus 127 ~~af~~L~~~Gv~~~~r~vP~d~ 149 (159)
T COG3444 127 IAAFKKLKAKGVEVEVRKVPNDS 149 (159)
T ss_pred HHHHHHHHhcCcEEEEEECCCCc
Confidence 45789999999999999999864
No 220
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=43.13 E-value=31 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=19.1
Q ss_pred hhhccccHHHHHHHHHHcCceEEeeee
Q 036856 16 EAESLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 16 ~~~~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
..+-|--+++.+++|+++|+++...-+
T Consensus 22 vd~eL~~~a~~~~~Lk~~gv~v~RyNL 48 (123)
T PF06953_consen 22 VDPELVRFAADLDWLKEQGVEVERYNL 48 (123)
T ss_dssp --HHHHHHHHHHHHHHHTT-EEEEEET
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEEcc
Confidence 334466788999999999999977543
No 221
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.08 E-value=69 Score=18.80 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=32.0
Q ss_pred hhhccccHHHHHHHHHHcCceEEeeeeC--C--CCeeEEEEeCCCCCeE
Q 036856 16 EAESLQFLSFGCFLLVEKGIQTFQRSLP--D--GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 16 ~~~~l~~l~~~~~~L~~~GI~~~~~~~p--~--~~~~QiF~~DPDGn~I 60 (68)
..|+--=|....+-|+..|+.+....+. . ....-+|..|.+|.+|
T Consensus 7 a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl 55 (75)
T cd04896 7 CVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKI 55 (75)
T ss_pred eCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCcc
Confidence 3444455778889999999999776655 3 3345566669999875
No 222
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=42.97 E-value=53 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEE
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL 62 (68)
+..++.|++.||+......+. .....+.+.||+|..--+
T Consensus 85 ~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~ 124 (312)
T cd01168 85 DFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMC 124 (312)
T ss_pred HHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeee
Confidence 456789999999986544442 233556777999986444
No 223
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=42.52 E-value=1e+02 Score=20.70 Aligned_cols=41 Identities=17% Similarity=0.010 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCceEEee-eeCC--CCeeEEEEeCCCCCeEEEeee
Q 036856 24 SFGCFLLVEKGIQTFQR-SLPD--GKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~-~~p~--~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+..++.|++.||+++.. ..+. ++...+ +.|++|....+...
T Consensus 66 ~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~-~~~~~g~~~~~~~~ 109 (292)
T cd01174 66 DELLENLREEGIDVSYVEVVVGAPTGTAVI-TVDESGENRIVVVP 109 (292)
T ss_pred HHHHHHHHHcCCCceEEEEcCCCCceeEEE-EEcCCCceEEEEeC
Confidence 44678999999998764 3344 333333 45778887766543
No 224
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=42.48 E-value=15 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
-|+|+..+++.|+++||+|...+.+
T Consensus 71 EL~HFeqV~eilq~RnI~~~~i~as 95 (203)
T COG4445 71 ELHHFEQVLEILQARNIPYVPIPAS 95 (203)
T ss_pred HHHHHHHHHHHHHHcCCccccCCcc
Confidence 4889999999999999999764433
No 225
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=42.35 E-value=34 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=21.9
Q ss_pred hhccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
+.....|..++++|+..||+++....|+
T Consensus 107 ~~~~~~l~~~v~~L~~~GirVSLFiD~d 134 (243)
T COG0854 107 AGQLDKLRDAVRRLKNAGIRVSLFIDPD 134 (243)
T ss_pred hhhhhhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3346678889999999999998765444
No 226
>PHA01735 hypothetical protein
Probab=42.24 E-value=20 Score=21.63 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.2
Q ss_pred hccccHHHHHHHHHHcCceEE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~ 38 (68)
++...|.+++++||..+|.-.
T Consensus 30 ATtaDL~AA~d~Lk~NdItgv 50 (76)
T PHA01735 30 ATTADLRAACDWLKSNDITGV 50 (76)
T ss_pred ccHHHHHHHHHHHHHCCCcee
Confidence 346789999999999988653
No 227
>PRK10026 arsenate reductase; Provisional
Probab=42.13 E-value=30 Score=22.66 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=20.2
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
+|.--..++++|+++|++|..+..
T Consensus 11 ~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 11 ACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEee
Confidence 566778999999999999977654
No 228
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=41.89 E-value=70 Score=18.55 Aligned_cols=15 Identities=40% Similarity=0.704 Sum_probs=12.0
Q ss_pred CeeEEEEeCCCCCeE
Q 036856 46 KVKQVFFFDPDGNGL 60 (68)
Q Consensus 46 ~~~QiF~~DPDGn~I 60 (68)
....+|+-||+|+.+
T Consensus 108 ~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 108 ALPAVFLIDPDGKIR 122 (124)
T ss_dssp ESEEEEEEETTSBEE
T ss_pred eEeEEEEECCCCEEE
Confidence 456799999999864
No 229
>PF15590 Imm15: Immunity protein 15
Probab=41.10 E-value=13 Score=22.13 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.3
Q ss_pred eeEEEEeCC-CCCeEEEeeecC
Q 036856 47 VKQVFFFDP-DGNGLEVASRRD 67 (68)
Q Consensus 47 ~~QiF~~DP-DGn~IEL~f~~~ 67 (68)
-++..+.|| ||--+|+..+.+
T Consensus 24 ~We~~y~DP~D~r~W~~~~~~s 45 (69)
T PF15590_consen 24 GWETLYQDPRDGRYWEKSYPES 45 (69)
T ss_pred chhhhccCCCCCceeEEecCcc
Confidence 378899999 888899887765
No 230
>PLN02245 ATP phosphoribosyl transferase
Probab=40.91 E-value=47 Score=25.63 Aligned_cols=38 Identities=18% Similarity=-0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.+++.|++.|+.++.. +-|++++.+++...||+.|-
T Consensus 81 ~e~t~~LL~~aGl~~~~~-----~~R~L~~~~~~~~~iev~fl 118 (403)
T PLN02245 81 AEDTLDLLKDCQLSVKKV-----NPRQYVAEIPQLPNLEVWFQ 118 (403)
T ss_pred HHHHHHHHHHcCCCCCCC-----CCceeEEEcCCCCceEEEEE
Confidence 578999999999988542 12788888887777888764
No 231
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=40.85 E-value=26 Score=21.81 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=11.9
Q ss_pred eeEEEEeCCCCCeE
Q 036856 47 VKQVFFFDPDGNGL 60 (68)
Q Consensus 47 ~~QiF~~DPDGn~I 60 (68)
...+.++||||+.|
T Consensus 18 ~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 18 RTRARLYDPDGNLL 31 (112)
T ss_pred CceEEEECCCCCEE
Confidence 36689999999987
No 232
>PRK14707 hypothetical protein; Provisional
Probab=40.76 E-value=1.1e+02 Score=29.01 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=40.2
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeeeCC----C--CeeEEEEeCCCCCeEEEeeec
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD----G--KVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~----~--~~~QiF~~DPDGn~IEL~f~~ 66 (68)
|....|...=..+...+...|.++|..+-.....+ + .---+.+++++|..+|++|.-
T Consensus 2576 YtviLp~e~Fv~~v~~~~~~L~~~G~~~~rvKNtw~~~d~tY~GvN~~~r~~~g~~FEIQFHT 2638 (2710)
T PRK14707 2576 YALELPSEGFVAKVQAAQDALRRQGMTCVNLQNYFTSGDGTYRGINASFTDAEGYAFEVQFHT 2638 (2710)
T ss_pred EEEEcCcchHHHHHHHHHHHHHhcCCeEEEeeccccCCCCcccceeeeEEcCCCCeEEEEecc
Confidence 45556655545667888999999999996543333 1 123457889999999999863
No 233
>PRK09377 tsf elongation factor Ts; Provisional
Probab=40.72 E-value=25 Score=25.78 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHcCceEEeeeeC---CCCeeEEEEeCCCCCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLP---DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p---~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+++.++++|+++|+.--.+... .-|.--+...+--|..+||++-
T Consensus 32 gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncE 79 (290)
T PRK09377 32 GDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSE 79 (290)
T ss_pred CCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecC
Confidence 45899999999999888433222 2333344555566888999863
No 234
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=40.53 E-value=94 Score=20.88 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=24.4
Q ss_pred HHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCCCeEE
Q 036856 25 FGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDGn~IE 61 (68)
..++.|++.||++.....+. ++ ..+-+.|++|...-
T Consensus 66 ~i~~~L~~~gI~~~~~~~~~~~t~-~~~~~~~~~~~~~~ 103 (288)
T cd01941 66 SILEESEKAGLNVRGIVFEGRSTA-SYTAILDKDGDLVV 103 (288)
T ss_pred HHHHHHHHcCCccceeeeCCCCcc-eEEEEECCCCCEEE
Confidence 46799999999986543443 33 33556788888653
No 235
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=40.39 E-value=42 Score=20.79 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPD 56 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPD 56 (68)
.+...-|+.+||+++... ...+...|++.|++
T Consensus 14 qaF~DYl~sqgI~~~i~~-~~~~~~~lwl~de~ 45 (101)
T PF12122_consen 14 QAFIDYLASQGIELQIEP-EGQGQFALWLHDEE 45 (101)
T ss_dssp HHHHHHHHHTT--EEEE--SSSE--EEEES-GG
T ss_pred HHHHHHHHHCCCeEEEEE-CCCCceEEEEeCHH
Confidence 456899999999987654 23345788888764
No 236
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=40.33 E-value=46 Score=18.47 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=20.8
Q ss_pred eEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.++|-++. ..++.+.+-|++.|+.|..
T Consensus 39 ~isFtv~~----~d~~~~~~il~~~~~~~~~ 65 (67)
T cd04914 39 EVIFTVDG----EVAEKAVDILEKMGLDPSV 65 (67)
T ss_pred CEEEEEch----hhHHHHHHHHHHcCCceEe
Confidence 48888884 4477778888999988754
No 237
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.23 E-value=76 Score=22.77 Aligned_cols=41 Identities=12% Similarity=-0.093 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCC----------eeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGK----------VKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~----------~~QiF~~DPDGn~ 59 (68)
..-+.++++++|+++|+.+.....|... .+.+|+.+++|..
T Consensus 64 ~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~ 114 (319)
T cd06591 64 RFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPR 114 (319)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCe
Confidence 3567899999999999998665444421 3458899998875
No 238
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=40.12 E-value=27 Score=24.52 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=14.2
Q ss_pred eEEEEeCCCCCeEEE
Q 036856 48 KQVFFFDPDGNGLEV 62 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL 62 (68)
.|+|..||.|+.+|.
T Consensus 124 p~LY~idpsG~~~e~ 138 (236)
T cd03765 124 PRLFLIYPQGNFIEA 138 (236)
T ss_pred CEEEEECCCCCEEee
Confidence 799999999999997
No 239
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=40.10 E-value=31 Score=21.92 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.7
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
...++|..||+|+..+..+.
T Consensus 110 ~~~~Ly~id~~G~~~~~~~~ 129 (182)
T cd01906 110 GGPQLYSVDPSGSYIEYKAT 129 (182)
T ss_pred CCcEEEEECCCCCEeeccEE
Confidence 45799999999999987653
No 240
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=40.06 E-value=50 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=16.8
Q ss_pred CCCCeeEEEEeCCCCCeEEE
Q 036856 43 PDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 43 p~~~~~QiF~~DPDGn~IEL 62 (68)
...+..|+|..||.|+.++.
T Consensus 114 d~~~~~~l~~vd~~G~~~~~ 133 (190)
T PF00227_consen 114 DEDGGPQLYSVDPSGSYIEC 133 (190)
T ss_dssp ETTTEEEEEEEETTSEEEEB
T ss_pred ccccccceeeeccccccccc
Confidence 34556899999999999987
No 241
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=39.58 E-value=93 Score=21.75 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHcCceEEee-eeCC---------CCeeEEEEeCCCCCeE
Q 036856 21 QFLSFGCFLLVEKGIQTFQR-SLPD---------GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~-~~p~---------~~~~QiF~~DPDGn~I 60 (68)
+.+-+.+++|.+.|+++... ..|. .+..+++..+|||.-+
T Consensus 21 ~~~p~~~~~l~~~g~~v~~~~~~p~~l~g~~~~~~~~~~i~Y~t~dg~y~ 70 (251)
T PRK11657 21 EELPAPVKALEKQGITIIKTFDAPGGLKGYAAKYQDMGVTIYLTPDGKHA 70 (251)
T ss_pred hcccHHHHHHHhCCCEEEEeecCCCCceEEEEEeCCCceEEEEcCCCCEE
Confidence 34567789999999999554 2222 3345688889998643
No 242
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.39 E-value=35 Score=17.77 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCceE
Q 036856 23 LSFGCFLLVEKGIQT 37 (68)
Q Consensus 23 l~~~~~~L~~~GI~~ 37 (68)
.+.+.+.|+++|+.+
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 889999999999875
No 243
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=39.39 E-value=67 Score=17.60 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=29.7
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC---------CCCeeEEEEeCCCCCeEE
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP---------DGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p---------~~~~~QiF~~DPDGn~IE 61 (68)
..+..+++.++.. ..+...+.+++.+.++.....+ ..+...+++.||+|..+-
T Consensus 51 ~~~~~~~v~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~ 112 (116)
T cd02966 51 DGVEVVGVNVDDD----DPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRA 112 (116)
T ss_pred CCeEEEEEECCCC----CHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEE
Confidence 3466777777633 2344444445554444221111 124667899999997764
No 244
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=39.38 E-value=68 Score=17.65 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=27.4
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCC
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDG 57 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDG 57 (68)
.|.++..+| -|..++..++++|+.+.. ++.+.......|+-|=+|
T Consensus 3 ~~~l~d~pG--~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPG--ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCC--HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 345543333 399999999999999944 333333444455555444
No 245
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=39.34 E-value=91 Score=23.77 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=33.8
Q ss_pred eeEEEecC-hhhccccHHHHHHHHHHcCceEEeeeeCCCCe--eEEEEeCCCCCeEEEeee
Q 036856 8 QFFSFGMS-EAESLQFLSFGCFLLVEKGIQTFQRSLPDGKV--KQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 8 ~~~~~~~~-~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~--~QiF~~DPDGn~IEL~f~ 65 (68)
-||++-.+ ..+-.....-..+.+++.|++..-..+-..++ .-.|+.|+||..|+..|.
T Consensus 177 ~~~~~~~d~~~ED~~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lfK 237 (397)
T PHA02117 177 GCLNIVATGQVEDFVTIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCFK 237 (397)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeeee
Confidence 36665554 12223334444566778888875543333221 124556999999999875
No 246
>PRK03996 proteasome subunit alpha; Provisional
Probab=39.31 E-value=31 Score=23.63 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..|+|..||.|+..+..+.
T Consensus 147 gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 147 GPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred cCEEEEECCCCCeecceEE
Confidence 3799999999999987653
No 247
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=39.21 E-value=44 Score=24.42 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCCCeE
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDGn~I 60 (68)
+..++.|++.||.+....... ++ +-+-+.||||+.-
T Consensus 117 ~~~~~~L~~~GI~~~~~~~~~~~Tg-~~~v~v~~dgert 154 (367)
T PLN02379 117 KLFVSNMGFSGVDLSRLRAKKGPTA-QCVCLVDALGNRT 154 (367)
T ss_pred HHHHHHHHHcCCCccCcccCCCCCc-eEEEEECCCCCcc
Confidence 346789999999975543332 33 4455779999764
No 248
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.05 E-value=83 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.009 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCC-----------------eeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGK-----------------VKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~-----------------~~QiF~~DPDGn~ 59 (68)
+.-..++++++|+++|+.+..-..|-.. .+-+|++|++|..
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~ 140 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKP 140 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCc
Confidence 3456899999999999999764444211 2358999999874
No 249
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=39.00 E-value=45 Score=20.37 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=19.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..-..+++.|+++||+|....+
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi 31 (117)
T TIGR01617 8 NCTTCKKARRWLEANGIEYQFIDI 31 (117)
T ss_pred CCHHHHHHHHHHHHcCCceEEEec
Confidence 466677889999999999987654
No 250
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=38.93 E-value=32 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.7
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
+..++|..||.|+..|..+.
T Consensus 139 ~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 139 GGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred CcCEEEEECCCCCeecceEE
Confidence 34799999999999998653
No 251
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=38.83 E-value=21 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHHcCceE
Q 036856 21 QFLSFGCFLLVEKGIQT 37 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~ 37 (68)
..++++.+.|++||+++
T Consensus 75 ~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 75 KEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 56888999999999864
No 252
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=38.67 E-value=1e+02 Score=20.31 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=18.8
Q ss_pred eeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 40 RSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 40 ~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
......+.-.|.|.|+||...++....
T Consensus 28 ~~~~~~g~v~I~~~~~dG~~~~v~~~~ 54 (143)
T PTZ00490 28 ALYSTPGKVKVCVKKRDGTHCDVEVPV 54 (143)
T ss_pred eeccCCCcEEEEEEcCCCCEEEEEECC
Confidence 344445556799999999887776543
No 253
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=38.41 E-value=34 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.0
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
+..++|..||.|+.++..+.
T Consensus 108 ~~~~l~~id~~G~~~~~~~~ 127 (189)
T cd01912 108 GGPFLYYVDPLGSLIEAPFV 127 (189)
T ss_pred CCeEEEEECCCCCeEecCEE
Confidence 45899999999999987754
No 254
>PRK10658 putative alpha-glucosidase; Provisional
Probab=38.18 E-value=1.1e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.008 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCC----------eeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGK----------VKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~----------~~QiF~~DPDGn~IEL~ 63 (68)
.-..++++++|+++|+.+..-..|... .+-.|++++||......
T Consensus 324 FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~ 377 (665)
T PRK10658 324 FPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWD 377 (665)
T ss_pred CCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeee
Confidence 456789999999999999776555421 34589999999887653
No 255
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=38.12 E-value=47 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=13.8
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
+...-|-+|+.|++++...+
T Consensus 15 G~~~~~~YD~~Grl~~~tdp 34 (42)
T TIGR01643 15 GTTTRYTYDAAGRLVEITDA 34 (42)
T ss_pred CCEEEEEECCCCCEEEEECC
Confidence 33556777888888877644
No 256
>PRK13599 putative peroxiredoxin; Provisional
Probab=38.05 E-value=1.3e+02 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.7
Q ss_pred CeeEEEEeCCCCCeEEEee
Q 036856 46 KVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f 64 (68)
..+.+|+-||||.......
T Consensus 118 ~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred eeeEEEEECCCCEEEEEEE
Confidence 4699999999998877654
No 257
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=37.96 E-value=62 Score=19.26 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=24.6
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEeeee
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
|+=+.+..+.+-+=..+.+.|+++||+|....+
T Consensus 17 f~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di 49 (97)
T TIGR00365 17 YMKGTPQFPQCGFSARAVQILKACGVPFAYVNV 49 (97)
T ss_pred EEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC
Confidence 333455556677777899999999999988655
No 258
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=37.86 E-value=37 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.4
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..++|..||.|+..+..+.
T Consensus 139 ~~~Ly~iD~~G~~~~~~~~ 157 (209)
T cd01911 139 GPQLYQTDPSGTYFGYKAT 157 (209)
T ss_pred CcEEEEECCCCCeeeeeEE
Confidence 4799999999999987754
No 259
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=54 Score=18.93 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHcCceEEeeeeC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
+-.=.++.+.|.++|++|....+.
T Consensus 11 CPyC~~ak~~L~~~g~~~~~i~~~ 34 (80)
T COG0695 11 CPYCKRAKRLLDRKGVDYEEIDVD 34 (80)
T ss_pred CchHHHHHHHHHHcCCCcEEEEec
Confidence 334467889999999999885443
No 260
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=37.78 E-value=55 Score=17.60 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=18.8
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..=..+.+.|+++||+|....+.
T Consensus 9 ~Cp~C~~ak~~L~~~~i~~~~i~i~ 33 (75)
T cd03418 9 NCPYCVRAKALLDKKGVDYEEIDVD 33 (75)
T ss_pred CChHHHHHHHHHHHCCCcEEEEECC
Confidence 3455567888899999999876554
No 261
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=72 Score=22.66 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.3
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCe
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKV 47 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~ 47 (68)
.-++||+. ...|+..+++.+|+.|+..-..-.|.++.
T Consensus 86 d~It~H~E---~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~ 122 (220)
T COG0036 86 DIITFHAE---ATEHIHRTIQLIKELGVKAGLVLNPATPL 122 (220)
T ss_pred CEEEEEec---cCcCHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 45788887 36789999999999999987766666653
No 262
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=37.57 E-value=29 Score=25.31 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=39.8
Q ss_pred ceeeEEEecChhh--ccccHHHHHHHHHHcCceEEeeeeC-------------CCCeeEEEEeCCCCCeEEEee
Q 036856 6 SLQFFSFGMSEAE--SLQFLSFGCFLLVEKGIQTFQRSLP-------------DGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 6 ~~~~~~~~~~~~~--~l~~l~~~~~~L~~~GI~~~~~~~p-------------~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+++|++++.... ....-...++.|++.|.++...... +...++-.-.+=||..|.++.
T Consensus 210 ~L~f~~y~~~~~~~~~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~ 283 (307)
T cd00114 210 PLRFFIYGLGEAEGLGPKTQSEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDD 283 (307)
T ss_pred cceEEEEecccccCCCCCCHHHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeC
Confidence 5788999986432 2344567899999999998642211 112355566788999998874
No 263
>PHA00450 host dGTPase inhibitor
Probab=37.34 E-value=97 Score=19.08 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHcCceEEeeee----CCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSL----PDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~----p~~~~~QiF~~DPDGn~IEL~ 63 (68)
|...+++++||.+..+.+-.... +...-+.+=+.|-+|+.|-..
T Consensus 9 L~afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~ 56 (85)
T PHA00450 9 LNAFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASR 56 (85)
T ss_pred HHHHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeee
Confidence 55688999999998887743222 223345588999999988543
No 264
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=37.32 E-value=36 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.4
Q ss_pred CCeeEEEEeCCCCCeEE
Q 036856 45 GKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IE 61 (68)
.+...|++.|-||+.|=
T Consensus 15 ~Gl~~I~itDrDGvpi~ 31 (119)
T PF08923_consen 15 DGLQAIVITDRDGVPIA 31 (119)
T ss_dssp TTEEEEEEEETTS-EEE
T ss_pred CCeEEEEEECCCCcEEE
Confidence 45788999999999873
No 265
>PRK11142 ribokinase; Provisional
Probab=37.25 E-value=94 Score=21.19 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCceEEeee-eCC--CCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRS-LPD--GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~-~p~--~~~~QiF~~DPDGn~IEL~f 64 (68)
+..+++|++.||+.+... .+. ++.. +-+.|++|....+..
T Consensus 69 ~~i~~~L~~~gV~~~~i~~~~~~~t~~~-~~~~~~~g~r~~~~~ 111 (306)
T PRK11142 69 ESMRQQLAKDGIDTAPVSVIKGESTGVA-LIFVNDEGENSIGIH 111 (306)
T ss_pred HHHHHHHHHcCCChhhEEEcCCCCCCEE-EEEECCCCCEEEEEe
Confidence 456899999999985433 343 3333 333588887765543
No 266
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=37.19 E-value=28 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=26.6
Q ss_pred eEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC
Q 036856 9 FFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 9 ~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
-++||+. ...++..+++.++++|+..-.--.|.++
T Consensus 83 ~i~~H~E---~~~~~~~~i~~ik~~g~k~GialnP~T~ 117 (201)
T PF00834_consen 83 YITFHAE---ATEDPKETIKYIKEAGIKAGIALNPETP 117 (201)
T ss_dssp EEEEEGG---GTTTHHHHHHHHHHTTSEEEEEE-TTS-
T ss_pred EEEEccc---chhCHHHHHHHHHHhCCCEEEEEECCCC
Confidence 5788877 4578889999999999998765566654
No 267
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=36.94 E-value=42 Score=22.43 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.3
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..|+|..||.|+.++..+.
T Consensus 139 ~~~ly~vd~~G~~~~~~~~ 157 (211)
T cd03756 139 GPRLFETDPSGAYNEYKAT 157 (211)
T ss_pred CCEEEEECCCCCeeeeEEE
Confidence 4799999999999988753
No 268
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=36.80 E-value=43 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.6
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
+.-|+|..||.|+..+....
T Consensus 140 ~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 140 LGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred CCeEEEEEcCCccEEeEEEE
Confidence 34899999999999987643
No 269
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=36.77 E-value=82 Score=17.90 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=17.8
Q ss_pred CeeEEEEeCCCCCeEEEeeecC
Q 036856 46 KVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
+...|=|+=|||..|+-.|..+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~ 24 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSS 24 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCC
Confidence 4567888999999999988765
No 270
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.63 E-value=89 Score=25.86 Aligned_cols=48 Identities=25% Similarity=0.085 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCC----------CeeEEEEeCCCCCeEEEeeec
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDG----------KVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~----------~~~QiF~~DPDGn~IEL~f~~ 66 (68)
+.-+.++++++|+++|++.-....|.. ..+=.|+.||||....-.+..
T Consensus 319 ~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~ 376 (772)
T COG1501 319 RFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWP 376 (772)
T ss_pred cCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccC
Confidence 355678999999999999977555542 145589999999988776654
No 271
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=36.33 E-value=51 Score=21.60 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCceEEeeeeCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG 45 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~ 45 (68)
.+++++|.++||++.-+.+|..
T Consensus 126 ~~~l~~l~~~Gv~v~~q~vP~d 147 (151)
T TIGR00854 126 ITAFRFLKQRGVKLFLRDVPSD 147 (151)
T ss_pred HHHHHHHHHcCCEEEEEECcCC
Confidence 4568899999999999998864
No 272
>PRK11899 prephenate dehydratase; Provisional
Probab=36.31 E-value=70 Score=23.08 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCCe
Q 036856 21 QFLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn~ 59 (68)
--|..++..++.+||.... ++.+...+..+|+-|=+|+.
T Consensus 206 GaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 206 AALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred ChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence 4488899999999999854 56566677889999988863
No 273
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=35.80 E-value=98 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=11.6
Q ss_pred eEEEEeCCCCCeEE
Q 036856 48 KQVFFFDPDGNGLE 61 (68)
Q Consensus 48 ~QiF~~DPDGn~IE 61 (68)
..+|+-||+|..+-
T Consensus 125 ~~~~lid~~G~i~~ 138 (142)
T cd02968 125 AAIYLVDPDGKLVR 138 (142)
T ss_pred ceEEEECCCCCEEE
Confidence 46999999998764
No 274
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=35.76 E-value=37 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred eEEEEeCCCCCeEEEee
Q 036856 48 KQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f 64 (68)
.++|..||.|+.++..+
T Consensus 110 ~~Ly~~d~~G~~~~~~~ 126 (185)
T TIGR03634 110 PHLYSLDPAGGIIEDDY 126 (185)
T ss_pred CEEEEECCCCCeEECCE
Confidence 78999999999998754
No 275
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.72 E-value=56 Score=17.64 Aligned_cols=18 Identities=17% Similarity=-0.130 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHcCceEE
Q 036856 21 QFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~ 38 (68)
...+.+.+.|+++|++++
T Consensus 48 ~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 48 SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCHHHHHHHHHHCCCEEE
Confidence 346678888999888764
No 276
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=35.62 E-value=68 Score=20.65 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCC
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDP 55 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DP 55 (68)
..+..+.+.|+++||.+......+. .-.|=|.||
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~-~~~irf~~~ 83 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND-SLLIRFDSP 83 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC-EEEEEECCH
Confidence 5678889999999999976554333 334444444
No 277
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=35.61 E-value=45 Score=25.02 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=42.5
Q ss_pred ceeeEEEecChhhccccHHHHHHHHHHcCceE--Eeee--------eCCCCeeEEEEeCCCCCeEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLVEKGIQT--FQRS--------LPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~--~~~~--------~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
.++||+..-...+|.+.|.++.+.|++.|..+ .++. +..+--..+=.-||-|..|++.
T Consensus 230 ~~G~fTVsPev~PGA~rl~~Ir~~l~e~~a~CvFaEPQF~Pkvve~v~~GT~vr~g~LDPlg~~i~lg 297 (318)
T COG4531 230 PLGHFTVSPEVQPGAKRLAEIRTQLKEQKATCVFAEPQFRPKVVETVAEGTSVRSGTLDPLGTNIKLG 297 (318)
T ss_pred ccceEEeCcccCccHHHHHHHHHHHHHhCCcEEecCCCCchHHHHHHhcCCccceeeeccCcccceeC
Confidence 46777777778999999999999999999987 3311 1122233456679999999875
No 278
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=35.56 E-value=48 Score=19.81 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCceEEe
Q 036856 23 LSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~ 39 (68)
+...++.|++.|+++..
T Consensus 36 VwK~Iq~Lr~~G~~I~s 52 (79)
T COG1654 36 VWKHIQQLREEGVDIES 52 (79)
T ss_pred HHHHHHHHHHhCCceEe
Confidence 66778999999999965
No 279
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=35.50 E-value=79 Score=17.25 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHHHHc--CceEEe-eeeCCCCeeEE-------EEeCCCCCe
Q 036856 28 FLLVEK--GIQTFQ-RSLPDGKVKQV-------FFFDPDGNG 59 (68)
Q Consensus 28 ~~L~~~--GI~~~~-~~~p~~~~~Qi-------F~~DPDGn~ 59 (68)
+.|++. |+++.. .+.|-.++.++ +..||||.-
T Consensus 3 ~~l~~~~p~~~v~~v~~spi~GlyeV~~~~~~i~Y~~~dg~y 44 (57)
T PF10411_consen 3 QALKKAFPGLKVESVSPSPIPGLYEVVLKGGGILYVDEDGRY 44 (57)
T ss_dssp HHHHCT--T-TCEEEEE-SSTTEEEEEE-TTEEEEEETTSSE
T ss_pred hHHHhhcCCCceeEEEcCCCCCeEEEEECCCeEEEEcCCCCE
Confidence 455666 777744 34444555554 447777754
No 280
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=35.42 E-value=27 Score=25.00 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred eeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCCCCeeEE
Q 036856 8 QFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQV 50 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~Qi 50 (68)
.-|+||+... +....+.++++++|+.+-...-|.+++.++
T Consensus 89 s~~tfH~E~~---q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~ 128 (224)
T KOG3111|consen 89 SLFTFHYEAT---QKPAELVEKIREKGMKVGLALKPGTPVEDL 128 (224)
T ss_pred ceEEEEEeec---cCHHHHHHHHHHcCCeeeEEeCCCCcHHHH
Confidence 3478998843 458889999999999997776677765444
No 281
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=34.81 E-value=1.1e+02 Score=20.19 Aligned_cols=19 Identities=26% Similarity=-0.022 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHcCceEE
Q 036856 20 LQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~ 38 (68)
...+....+.|+++|+.+.
T Consensus 184 ~~s~~~f~~~L~~~g~~v~ 202 (242)
T PF03432_consen 184 SSSFEDFIERLEEKGIEVR 202 (242)
T ss_pred CCCHHHHHHHHHHCCCEEE
Confidence 4668888999999999998
No 282
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=34.60 E-value=28 Score=20.26 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=13.8
Q ss_pred CCeeEEEEeCCCCCeEEE
Q 036856 45 GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL 62 (68)
...-.+-+.||+|+.+.-
T Consensus 35 ~~~~~v~i~dp~g~~v~~ 52 (99)
T PF01835_consen 35 NSPVTVTIKDPSGNEVFR 52 (99)
T ss_dssp SEEEEEEEEETTSEEEEE
T ss_pred CCceEEEEECCCCCEEEE
Confidence 345669999999998843
No 283
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=34.44 E-value=83 Score=22.20 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=8.7
Q ss_pred eeEEEEeCCCC
Q 036856 47 VKQVFFFDPDG 57 (68)
Q Consensus 47 ~~QiF~~DPDG 57 (68)
-..+|++|||=
T Consensus 157 ~~~vyihDP~~ 167 (207)
T PF11814_consen 157 DDFVYIHDPDV 167 (207)
T ss_pred CCEEEEeCCCC
Confidence 46789999974
No 284
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=34.43 E-value=41 Score=21.98 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCceEEeeeeCCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
.+++++|.++|+++.-+.+|...
T Consensus 126 ~~~l~~l~~~Gv~i~~q~vP~~~ 148 (151)
T PF03830_consen 126 IEALKELADKGVEIEFQMVPDDK 148 (151)
T ss_dssp HHHHHHHHHTT-EEEE-SSTTS-
T ss_pred HHHHHHHHHCCCEEEEEECcCCC
Confidence 45789999999999999888753
No 285
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=34.43 E-value=62 Score=23.33 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCC
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPD 56 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPD 56 (68)
+...+..+-|+.+||+.+.. ..+...+++.|++
T Consensus 11 ~~a~~f~dyl~~~~i~~~~~---~~~~~~lwl~d~~ 43 (276)
T PRK10907 11 RLAQAFVDYMATQGVILTIQ---QHNQSDIWLADES 43 (276)
T ss_pred HHHHHHHHHHHHCCCcEEEe---cCCceEEEecCHH
Confidence 44677789999999999665 3333568888764
No 286
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=34.39 E-value=60 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=19.7
Q ss_pred HHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 25 FGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
.+++.||++||.|-.-.+-..+ +|-|||.
T Consensus 67 D~~~iLK~~GvNyvRlRvwndP------~dsngn~ 95 (403)
T COG3867 67 DALQILKNHGVNYVRLRVWNDP------YDSNGNG 95 (403)
T ss_pred HHHHHHHHcCcCeEEEEEecCC------ccCCCCc
Confidence 3689999999999554443332 6777764
No 287
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=34.13 E-value=92 Score=17.64 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=16.8
Q ss_pred CCCeeEEEEeCCCCCeEEEe
Q 036856 44 DGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 44 ~~~~~QiF~~DPDGn~IEL~ 63 (68)
..|.++|=+.|.||+.|-..
T Consensus 42 ~~G~WrV~V~~~~G~~l~~~ 61 (66)
T PF11141_consen 42 QPGDWRVEVVDEDGQVLGSL 61 (66)
T ss_pred CCcCEEEEEEcCCCCEEEEE
Confidence 46789999999999998654
No 288
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=34.06 E-value=53 Score=17.85 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=18.7
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..=..+.+.|+++||+|....+.
T Consensus 10 ~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 10 GCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECC
Confidence 3445567789999999999876553
No 289
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=33.92 E-value=1.2e+02 Score=19.07 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=33.4
Q ss_pred ceeeEEEecChhh--ccccHHHHHHHHHHcCceEEeeeeCC---------CCeeEEEEeCCCCCeEEE
Q 036856 6 SLQFFSFGMSEAE--SLQFLSFGCFLLVEKGIQTFQRSLPD---------GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 6 ~~~~~~~~~~~~~--~l~~l~~~~~~L~~~GI~~~~~~~p~---------~~~~QiF~~DPDGn~IEL 62 (68)
.++.+++.++... .....++..+.+++.++++.....+. .....+|+.||+|..+-.
T Consensus 58 ~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 58 GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 4667777765220 01235566666777787764322111 235679999999987643
No 290
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=33.85 E-value=65 Score=19.76 Aligned_cols=36 Identities=19% Similarity=0.023 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPD 56 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPD 56 (68)
+.........|+++||.+.... +.++.-.|-|.|+|
T Consensus 45 ~~~~~~v~~~L~~~~I~~k~i~-~~~~~llirf~~~~ 80 (101)
T PF13721_consen 45 LPDAFQVEQALKAAGIAVKSIE-QEGDSLLIRFDSTD 80 (101)
T ss_pred CChHHHHHHHHHHCCCCcceEE-eeCCEEEEEECCHH
Confidence 4445688999999999997655 44444556666654
No 291
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.84 E-value=1.7e+02 Score=21.11 Aligned_cols=43 Identities=21% Similarity=0.067 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCC------------eeEEEEeCCCCCeEE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGK------------VKQVFFFDPDGNGLE 61 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~------------~~QiF~~DPDGn~IE 61 (68)
..-..+++++.|+++|+.+.....|... ..-.|+++++|....
T Consensus 62 ~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~ 116 (339)
T cd06603 62 KFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFE 116 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEE
Confidence 3557889999999999999775555421 346899999997643
No 292
>KOG3405 consensus RNA polymerase subunit K [Transcription]
Probab=33.80 E-value=59 Score=21.62 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHcCceEEe-eeeCCCC
Q 036856 21 QFLSFGCFLLVEKGIQTFQ-RSLPDGK 46 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~-~~~p~~~ 46 (68)
.=|.=++++|+++.|++-. +.+|+++
T Consensus 97 dPL~IAmkEL~qkKIP~iIRRyLPDgS 123 (136)
T KOG3405|consen 97 DPLEIAMKELKQKKIPFIIRRYLPDGS 123 (136)
T ss_pred CHHHHHHHHHhhccCceEEeeeCCCCC
Confidence 3477789999999999944 5667754
No 293
>PRK03094 hypothetical protein; Provisional
Probab=33.72 E-value=39 Score=20.47 Aligned_cols=19 Identities=32% Similarity=0.160 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHcCceEEe
Q 036856 21 QFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~ 39 (68)
++|....+.|+++|+++-.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~ 26 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQ 26 (80)
T ss_pred cCcHHHHHHHHHCCCEEEe
Confidence 3577888999999999954
No 294
>PRK04247 hypothetical protein; Provisional
Probab=33.68 E-value=1.5e+02 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~I 60 (68)
|+.+-+---.|.+.|..+-.+..+. .+.--+...|+||+.+
T Consensus 133 Lq~~l~~np~li~~G~~~l~rE~~t~~G~IDila~D~~G~lV 174 (238)
T PRK04247 133 MVDRILENPDLIEEGFRPLAREYPTPAGIIDILGRDKDGNLV 174 (238)
T ss_pred HHHHHHhCHHHHcCCCEEEEEecccCCCceeEEEECCCCCEE
Confidence 5555555456777888885554442 4567789999999765
No 295
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.63 E-value=34 Score=18.41 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHcCceE
Q 036856 22 FLSFGCFLLVEKGIQT 37 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~ 37 (68)
+.+.+.+.|+++|+++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 6889999999999864
No 296
>PRK03298 hypothetical protein; Provisional
Probab=33.58 E-value=1.1e+02 Score=21.86 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeEEE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~IEL 62 (68)
++.+-+.--.+-+.|...-.+..|. .|.--++.+|.||+.+=+
T Consensus 108 Lq~~lae~p~~i~~G~~lv~rE~~t~~G~IDil~rD~~G~~V~v 151 (224)
T PRK03298 108 LQELLAEHIETLGEGYTLVRREYPTAIGPVDLLCRDADGGTVAV 151 (224)
T ss_pred HHHHHHhCHHHhcCCCEEEEEEecCCCCceeEEEEcCCCCEEEE
Confidence 4555444456778888885555443 456889999999987644
No 297
>PRK10638 glutaredoxin 3; Provisional
Probab=33.49 E-value=60 Score=18.28 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHcCceEEeeeeC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
+-.=..+.+.|+++|++|....+.
T Consensus 12 Cp~C~~a~~~L~~~gi~y~~~dv~ 35 (83)
T PRK10638 12 CPFCHRAKALLNSKGVSFQEIPID 35 (83)
T ss_pred ChhHHHHHHHHHHcCCCcEEEECC
Confidence 445567889999999999886654
No 298
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=33.28 E-value=51 Score=22.14 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred eEEEEeCCCCCeEEEee
Q 036856 48 KQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f 64 (68)
.|+|..||.|...+...
T Consensus 137 p~Ly~~Dp~G~~~~~~~ 153 (211)
T cd03749 137 PHLFQTCPSGNYFEYKA 153 (211)
T ss_pred CeEEEECCCcCEeeeeE
Confidence 78999999999988764
No 299
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=33.25 E-value=53 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.7
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
.-++|..||.|...+..+.
T Consensus 142 g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 142 GFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred CCEEEEECCCCCeeeeeEE
Confidence 3689999999999987653
No 300
>PHA00159 endonuclease I
Probab=33.20 E-value=1e+02 Score=20.83 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=24.8
Q ss_pred cHHH-HHHHHHHcCceEEe--eee----CCCCeeE-EEEeCCCCCeEEEe
Q 036856 22 FLSF-GCFLLVEKGIQTFQ--RSL----PDGKVKQ-VFFFDPDGNGLEVA 63 (68)
Q Consensus 22 ~l~~-~~~~L~~~GI~~~~--~~~----p~~~~~Q-iF~~DPDGn~IEL~ 63 (68)
+|++ +-+.|.++||.|+- ..+ |..+... ==|.-|||..||.-
T Consensus 18 gLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvK 67 (148)
T PHA00159 18 GLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETK 67 (148)
T ss_pred hHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEec
Confidence 3443 56889999999832 222 3222111 11337999999974
No 301
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=33.14 E-value=58 Score=19.90 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCC
Q 036856 26 GCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 26 ~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn 58 (68)
++++.+-.|--|..+++|..+ .-.|+.|+||.
T Consensus 50 ~ieEyRv~G~l~~IkV~P~~G-~~Yyl~d~dg~ 81 (105)
T PF11191_consen 50 TIEEYRVNGQLYMIKVQPKAG-PPYYLVDPDGD 81 (105)
T ss_pred EEEEEEECCeEeeEEEEeCCC-CCEEEECCCCC
Confidence 344555556666667788766 77899999884
No 302
>PLN02367 lactoylglutathione lyase
Probab=33.04 E-value=1.8e+02 Score=20.67 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=31.0
Q ss_pred ceeeEEEecChhhccccHHHHHHHHH-HcCceE-EeeeeCCCCeeEEEEe
Q 036856 6 SLQFFSFGMSEAESLQFLSFGCFLLV-EKGIQT-FQRSLPDGKVKQVFFF 53 (68)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~L~-~~GI~~-~~~~~p~~~~~QiF~~ 53 (68)
.++|..+.|. .++..++... ..|.+. .....|..+.+-.|+.
T Consensus 75 ~~~HtmlRVk------Dle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~ 118 (233)
T PLN02367 75 IMQQTMYRIK------DPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMG 118 (233)
T ss_pred EEEEEEEEeC------CHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEee
Confidence 5778888877 6888888885 479987 4456677777777773
No 303
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=32.65 E-value=11 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHcCceEEeeeeC--CCCeeEEEEeCC
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLP--DGKVKQVFFFDP 55 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p--~~~~~QiF~~DP 55 (68)
+..++..+.|++.|+++...+-. .+---++|.+|+
T Consensus 32 ~e~~~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~ 68 (281)
T PF02274_consen 32 EEHDALVEALRSNGVEVIELPPLLEEPLPDMVFTRDP 68 (281)
T ss_dssp HHHHHHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCC
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCc
Confidence 45667789999999999775433 333355676665
No 304
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=32.42 E-value=97 Score=21.96 Aligned_cols=39 Identities=8% Similarity=-0.040 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+++++.|++.|+.+... .+-+++.+.+++-..||+.+-
T Consensus 14 ~e~t~~ll~~aGl~~~~~----~~~R~L~~~~~~~~~i~~~~v 52 (228)
T PRK13583 14 KEKTFAWFEKAGLTLVRT----GSDREYRGRVEGEDDVELLFL 52 (228)
T ss_pred HHHHHHHHHHcCCCcccC----CCCcccEeEcCCCCceEEEEE
Confidence 578999999999998652 123778888777666777653
No 305
>cd04495 BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds corresponding to the third OB fold (OB3) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=32.38 E-value=1e+02 Score=19.48 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=22.7
Q ss_pred CceEEeeeeCCCCeeEEEEeCCCCCeEEEeeec
Q 036856 34 GIQTFQRSLPDGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 34 GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
||-++...-+.+...-+|+.|++=|.+-+.|+.
T Consensus 4 GvVvsV~~~~~g~~~~vYLaDe~~nll~vkfw~ 36 (100)
T cd04495 4 GVVISVGKPIEGKFPAVYLADECLNLLCVKFWS 36 (100)
T ss_pred EEEEEEcccccCccceEEEecCCcCEEEEEEec
Confidence 444443332224556699999999999999875
No 306
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.24 E-value=67 Score=23.91 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=32.8
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeC
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
-+=+||++++...-+...+.+..+.+.-+|+.+.+..+-
T Consensus 207 ~p~~~yTLQl~a~~s~~nv~~fa~k~~l~~~~vy~t~rn 245 (292)
T COG3266 207 APSSHYTLQLSASGSYDNVNGFAKKQNLKGYVVYETTRN 245 (292)
T ss_pred CCCCceEEEEecccchHHHHHHHHhcCCCceEEeEeecC
Confidence 356899999999999999999999999999777665543
No 307
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=32.09 E-value=57 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=16.2
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..|+|..||.|+..+..+.
T Consensus 141 gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 141 GPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred cCEEEEECCCCCEEeeEEE
Confidence 3899999999999987653
No 308
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=32.05 E-value=1.6e+02 Score=19.86 Aligned_cols=39 Identities=21% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCceEEeeeeC-C--CCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRSLP-D--GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p-~--~~~~QiF~~DPDGn~IEL~ 63 (68)
+..++.|++.||+......+ . ++...+.+ |++|..-.+.
T Consensus 61 ~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~ 102 (293)
T TIGR02152 61 DELLENLKSNGIDTEYVGTVKDTPTGTAFITV-DDTGENRIVV 102 (293)
T ss_pred HHHHHHHHHcCCCeeEEEEcCCCCCceEEEEE-cCCCCEEEEE
Confidence 45688999999998655443 2 44444444 7788765544
No 309
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=31.94 E-value=64 Score=17.75 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.0
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
++..=..+.+.|+++|++|....+.
T Consensus 8 ~Cp~C~~a~~~L~~~~i~~~~~di~ 32 (79)
T TIGR02181 8 YCPYCTRAKALLSSKGVTFTEIRVD 32 (79)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEec
Confidence 3555667888899999999886554
No 310
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=31.94 E-value=1.2e+02 Score=21.42 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=34.4
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEeeeeCCCC----------eeEEEEeCCCCCeEE
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDGK----------VKQVFFFDPDGNGLE 61 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~~----------~~QiF~~DPDGn~IE 61 (68)
.|..++. ..-+.++++++|+++|+.+-.-..|... ..-.|++|++|....
T Consensus 57 ~f~~d~~-~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~ 116 (308)
T cd06593 57 DFEFDPD-RFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQ 116 (308)
T ss_pred eeEECcc-cCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeee
Confidence 3445532 3667899999999999999765555421 135689999987543
No 311
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=31.88 E-value=64 Score=22.13 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHcCceEEe-----eee----CCCCeeEEEEeCCCCCeEEEeeecC
Q 036856 22 FLSFGCFLLVEKGIQTFQ-----RSL----PDGKVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~-----~~~----p~~~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
..=..+..-=+.|+.++. +.. .+-..-|+=+.-||||++.+.|++-
T Consensus 108 DFF~Icrka~qqg~sIrVyM~DgR~ieG~stGvnacqVgl~~~~Gn~~qi~fDWV 162 (165)
T PF03614_consen 108 DFFSICRKAHQQGKSIRVYMADGREIEGKSTGVNACQVGLILPNGNHMQIFFDWV 162 (165)
T ss_pred hHHHHHHHHHHCCCeEEEEEcCCcEEEeeecccceEEEEEEcCCCCEEEEEeehh
Confidence 344455555556665544 222 1234679999999999999999763
No 312
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=31.87 E-value=48 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=16.0
Q ss_pred CeeEEEEeCCCCCeEEEee
Q 036856 46 KVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f 64 (68)
+..++|..||.|+..+...
T Consensus 138 ~~p~Ly~iD~~G~~~~~~~ 156 (207)
T cd03755 138 GTPRLYQTDPSGTYSAWKA 156 (207)
T ss_pred CCeEEEEECCCcCEEcceE
Confidence 3579999999999988764
No 313
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=31.86 E-value=33 Score=20.75 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=17.9
Q ss_pred EecChhhccccHHHHHHHHHHcCceEE
Q 036856 12 FGMSEAESLQFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 12 ~~~~~~~~l~~l~~~~~~L~~~GI~~~ 38 (68)
|++| ..-+++++++|.++|=--+
T Consensus 26 ~~~p----~~~VeaMLe~l~~kGkver 48 (78)
T PRK15431 26 LNTP----QPMINAMLQQLESMGKAVR 48 (78)
T ss_pred HCcC----HHHHHHHHHHHHHCCCeEe
Confidence 6677 5569999999999995443
No 314
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=31.60 E-value=1.5e+02 Score=19.31 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=21.3
Q ss_pred HHHcCceEEeeeeCC-------CCeeEEEEeCCCCCeEEEe
Q 036856 30 LVEKGIQTFQRSLPD-------GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 30 L~~~GI~~~~~~~p~-------~~~~QiF~~DPDGn~IEL~ 63 (68)
.+..|+.+....... .....+|+-||+|...-..
T Consensus 131 ~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 131 AKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp HHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred HHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 344677776554422 1245799999999887654
No 315
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=31.35 E-value=78 Score=23.33 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=21.5
Q ss_pred ceeeEEEe--cChhhccccHHHHHHHHHHcCceEEeeeeCC
Q 036856 6 SLQFFSFG--MSEAESLQFLSFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 6 ~~~~~~~~--~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~ 44 (68)
..-||||- |+-..-.+-.+-+.+.-++.|++|.....|+
T Consensus 133 tFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPD 173 (275)
T PF12683_consen 133 TFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPD 173 (275)
T ss_dssp -EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE--
T ss_pred eEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34577773 4422323344556677788999998877776
No 316
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=31.34 E-value=68 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCceEEeeeeCCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGK 46 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~ 46 (68)
.+++++|.++||++.-+.+|...
T Consensus 127 ~~~lk~l~~~Gv~v~~q~vP~d~ 149 (157)
T PRK11425 127 IAAFNDLKAAGVECFVQGVPTEP 149 (157)
T ss_pred HHHHHHHHHcCCEEEEEECcCCc
Confidence 35688999999999999999743
No 317
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.30 E-value=99 Score=17.14 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=30.1
Q ss_pred hccccHHHHHHHHHHcCceEEe-eeeCCCC--eeEEEEeCCCCCeE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQ-RSLPDGK--VKQVFFFDPDGNGL 60 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~-~~~p~~~--~~QiF~~DPDGn~I 60 (68)
++---|......|.++|+.+.. ...+..+ .-.+++.||+|..+
T Consensus 10 D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~ 55 (72)
T cd04926 10 DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV 55 (72)
T ss_pred CccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC
Confidence 3445588889999999999944 4444433 34577789998753
No 318
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=31.20 E-value=1.4e+02 Score=19.33 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=30.3
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeee------------CCCCeeEEEEeCCCCCeEE
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSL------------PDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~------------p~~~~~QiF~~DPDGn~IE 61 (68)
+..+++.+++ ..+.+.+.+++.|+.+...+. .-.++-..|+-||+|+.+.
T Consensus 66 ~~vV~Vs~D~-----~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 66 LALVYVSMDQ-----SEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred EEEEEEECCC-----CHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 4445555442 235566778888865422111 1145778999999999875
No 319
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=31.14 E-value=62 Score=26.41 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=22.3
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
.-+.|.+.+++|+++|+.--- -|+| .||||+.
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~--------lqaf-adp~gd~ 363 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVY--------LQAF-ADPDGDG 363 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEE--------EEec-cCCCCCc
Confidence 357788999999999987632 3344 5776654
No 320
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=31.06 E-value=40 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=14.0
Q ss_pred eEEEEeCCCCCeEEEe
Q 036856 48 KQVFFFDPDGNGLEVA 63 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~ 63 (68)
-|+|..||.|+.++..
T Consensus 134 p~Ly~vDpsG~~~~~~ 149 (228)
T TIGR03691 134 DQLYRITFDGSIVDER 149 (228)
T ss_pred CEEEEECCCCCceecc
Confidence 6999999999988753
No 321
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=31.01 E-value=1.5e+02 Score=19.06 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHcCceEEeeee--CCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSL--PDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~--p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+++...+..+|+.+|----.+.- -..+.--++..|+||..+|-.
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~ 69 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTL 69 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeE
Confidence 34567788999999852222211 125667789999999998865
No 322
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=30.85 E-value=61 Score=18.19 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=18.6
Q ss_pred ccccHHHHHHHHHHcCceEEeeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
++..=..+.+.|+++||+|....+
T Consensus 17 ~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 17 GCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCHhHHHHHHHHHHcCCCcEEEEC
Confidence 455556788999999999988554
No 323
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.85 E-value=88 Score=17.35 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCceEEeee
Q 036856 24 SFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~ 41 (68)
+.+.++|+++||++....
T Consensus 44 ~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 44 KILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp HHHHHHHHHTTEEEEESE
T ss_pred HHHHHHHHHCCCEEEeCC
Confidence 446789999999996543
No 324
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.79 E-value=1e+02 Score=22.07 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=33.7
Q ss_pred EecChhhccccHHHHHHHHHHcCceEEeeeeCCC----------CeeEEEEeCCCCC
Q 036856 12 FGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPDG----------KVKQVFFFDPDGN 58 (68)
Q Consensus 12 ~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~~----------~~~QiF~~DPDGn 58 (68)
|..+ .++.-..++++++|+++|+.+.....|.. ..+-+|+.+++|.
T Consensus 65 f~~d-~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~ 120 (317)
T cd06599 65 FNWN-KDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGR 120 (317)
T ss_pred eecC-cccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCC
Confidence 4444 24566799999999999999976555542 2456889998876
No 325
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=30.76 E-value=1.1e+02 Score=20.46 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHcCceEEeeeeCCC---CeeEEEEeCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPDG---KVKQVFFFDPD 56 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~~---~~~QiF~~DPD 56 (68)
.|..+...|++.||.++.....++ ++-..-+-+||
T Consensus 16 RL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d 53 (142)
T COG4747 16 RLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD 53 (142)
T ss_pred hHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH
Confidence 478889999999999988777653 34444444554
No 326
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=30.62 E-value=1.3e+02 Score=20.15 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCceEEeee-eCC-CCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRS-LPD-GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~-~p~-~~~~QiF~~DPDGn~IEL~f 64 (68)
+..++.|++.||+.+... .+. ...+-+.+.||||...-+..
T Consensus 66 ~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~ 108 (301)
T PF00294_consen 66 EIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFS 108 (301)
T ss_dssp HHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEE
T ss_pred hhhhhccccccccccccccccccccceeEeeecccccceeeec
Confidence 446889999999996554 343 23466777888886655443
No 327
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=30.57 E-value=68 Score=21.92 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
....-+++++.|..|.+.........++=...|||..|
T Consensus 14 ~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIl 51 (198)
T COG0518 14 LGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIII 51 (198)
T ss_pred hHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEE
Confidence 35566888999977777654455566666667777654
No 328
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=30.39 E-value=1.1e+02 Score=21.34 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
+=.+.+++.|++.|+.+... ..+.|++++.+++ +.|++.+-
T Consensus 12 RL~e~t~~ll~~aG~~~~~~---~~~~R~L~~~~~~-~~i~~~~~ 52 (215)
T PRK01686 12 RILEETLPLLAKAGIDPSED---PDKSRKLIFPTPE-PDVRFLLV 52 (215)
T ss_pred ccHHHHHHHHHHcCCCcccC---CCCCcceEeecCC-CCEEEEEE
Confidence 34678999999999988643 2234778888775 45576653
No 329
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=30.38 E-value=38 Score=23.02 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=15.0
Q ss_pred CCeeEEEEeCCCCCeEEE
Q 036856 45 GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL 62 (68)
...+.++.++|||+.+-.
T Consensus 47 ~~~~Hl~~~~~~g~LvAy 64 (155)
T COG2153 47 GDTRHLLGWTPDGELVAY 64 (155)
T ss_pred cccceEEEEcCCCeEEEE
Confidence 457899999999998754
No 330
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=30.38 E-value=61 Score=23.48 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.7
Q ss_pred CCeeEEEEeCCCCC
Q 036856 45 GKVKQVFFFDPDGN 58 (68)
Q Consensus 45 ~~~~QiF~~DPDGn 58 (68)
..-.|+|-.||.||
T Consensus 142 ~~gyqLy~SdPSGn 155 (249)
T KOG0178|consen 142 RYGYQLYQSDPSGN 155 (249)
T ss_pred CcceEEEecCCCCC
Confidence 33489999999998
No 331
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=30.35 E-value=84 Score=23.37 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=15.2
Q ss_pred cccHHHHHHHHHHcCceE
Q 036856 20 LQFLSFGCFLLVEKGIQT 37 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~ 37 (68)
-+.|+..++|+++.||..
T Consensus 16 ~~nl~~l~~ri~~~~~~t 33 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINT 33 (294)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 356889999999999876
No 332
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=30.05 E-value=93 Score=18.11 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.7
Q ss_pred CCeeEEEEeCCCCCeEEEee
Q 036856 45 GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~f 64 (68)
+..-++.+.+|+|+.+++..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v 50 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEV 50 (93)
T ss_pred CCcEEEEEECCCCCeeEeEE
Confidence 45678999999998877754
No 333
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=30.04 E-value=64 Score=17.47 Aligned_cols=18 Identities=22% Similarity=-0.143 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHcCceEE
Q 036856 21 QFLSFGCFLLVEKGIQTF 38 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~ 38 (68)
..|+++.+.|+++|.-|.
T Consensus 27 ~~L~k~~~wld~rgWwYe 44 (45)
T PF12123_consen 27 AELDKFTAWLDERGWWYE 44 (45)
T ss_dssp HHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHhcCcEEe
Confidence 459999999999998774
No 334
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=29.98 E-value=64 Score=21.87 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.5
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
..|+|-.||.|+..+...
T Consensus 138 g~~Ly~~d~~G~~~~~~~ 155 (227)
T cd03750 138 GPYLYQVDPSGSYFTWKA 155 (227)
T ss_pred CCEEEEECCCCCEEeeeE
Confidence 368999999999998764
No 335
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=29.93 E-value=75 Score=21.00 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCceEEeeeeCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG 45 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~ 45 (68)
.+++++|.++||++.-+.+|..
T Consensus 130 ~~~l~~l~~~Gv~v~~q~vP~d 151 (158)
T PRK09756 130 LADLRFIKQRGVNVFIQDVPGD 151 (158)
T ss_pred HHHHHHHHHcCCEEEEEECcCC
Confidence 3568899999999999999975
No 336
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=29.80 E-value=1.8e+02 Score=19.59 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCceEEeee-eCC--CCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRS-LPD--GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~-~p~--~~~~QiF~~DPDGn~IEL~ 63 (68)
+...+.|++.||+..... .+. ++.. +-+.|++|...-+.
T Consensus 58 ~~i~~~l~~~gi~~~~~~~~~~~~T~~~-~~~~~~~g~r~~~~ 99 (295)
T cd01167 58 DFLLETLKEAGVDTRGIQFDPAAPTTLA-FVTLDADGERSFEF 99 (295)
T ss_pred HHHHHHHHHcCCCchheeecCCCCceEE-EEEECCCCCEeEEe
Confidence 346789999999986543 233 3333 33346788755443
No 337
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=29.76 E-value=1.7e+02 Score=20.10 Aligned_cols=39 Identities=23% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHHHcCceEEee-eeCC-CCeeEEEEeCCCCCeEEEe
Q 036856 25 FGCFLLVEKGIQTFQR-SLPD-GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~-~~p~-~~~~QiF~~DPDGn~IEL~ 63 (68)
...+.|++.||.+... ..+. .....+.+.|+++..+.+.
T Consensus 78 ~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 118 (315)
T TIGR02198 78 RLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVD 118 (315)
T ss_pred HHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEEEec
Confidence 4567999999997543 3333 2223456677777666654
No 338
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=29.68 E-value=1.3e+02 Score=24.09 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHcCceEEe----------------------e-eeCC---------CCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ----------------------R-SLPD---------GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~----------------------~-~~p~---------~~~~QiF~~DPDGn~IEL~ 63 (68)
.+=|....++|++.|+++.. + ..|. ......|+.+|||+..++.
T Consensus 94 ~~~l~~~~~~l~~~~~~v~~apfg~~k~f~~~~~ghpl~els~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (613)
T PRK03991 94 VEVLKKLEEELKSEGYEVLRAPFGWYKAFKISCKGHPLSELSRTIRPEVSEAEKEEEEIESYWYILTPDGELHDPE 169 (613)
T ss_pred HHHHHHHHHHHhhCCceEEEeccccceeEEEEecCcchHHhccccccCcchhhhcccccceeEEEECCCCCeeccc
Confidence 34466667788888888855 1 1122 2234689999999988765
No 339
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.62 E-value=49 Score=19.91 Aligned_cols=19 Identities=32% Similarity=0.036 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHcCceEEee
Q 036856 22 FLSFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~ 40 (68)
+|....+.|+++|+++...
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l 27 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDL 27 (80)
T ss_pred CchHHHHHHHHCCCEEEec
Confidence 4778889999999999653
No 340
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=29.50 E-value=1.9e+02 Score=19.93 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 25 FGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
..++.|++.||.......+.....-+.+.|++|..-.+.+
T Consensus 69 ~~~~~l~~~gv~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 108 (312)
T PRK09513 69 GFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNF 108 (312)
T ss_pred HHHHHHHHcCCCccEEECCCCCEEEEEEEeCCCcEEEEeC
Confidence 3467899999996544434322334677888887544443
No 341
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.40 E-value=39 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=12.1
Q ss_pred CCeeEEEEeCCCCCeE
Q 036856 45 GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~I 60 (68)
.+..++++.|++|..+
T Consensus 37 ~~~~~i~v~D~~g~~l 52 (116)
T PF14827_consen 37 SDIDYIVVTDRDGIVL 52 (116)
T ss_dssp CT-SEEEEECTTSBEC
T ss_pred cCCeEEEEEcCCCCEE
Confidence 5567899999999764
No 342
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.34 E-value=2.3e+02 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHc-----CceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 26 GCFLLVEK-----GIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 26 ~~~~L~~~-----GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
..+.|++. ..++.......+++..+=+.-.||+.||-..-
T Consensus 51 ~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~v~~ 95 (345)
T PRK14457 51 WRESLKDDGVPIGRLTIVERSVAPDGTLKLLLSTEDGEIIETVGI 95 (345)
T ss_pred HHHHHhhcCccccCceEEEEEEcCCCcEEEEEEcCCCCEEEEEEE
Confidence 45667763 23343344444555666668899999997643
No 343
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=29.30 E-value=68 Score=22.28 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=19.5
Q ss_pred cCceEEeeeeCCCCeeEEEEeCCCCCeEE
Q 036856 33 KGIQTFQRSLPDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 33 ~GI~~~~~~~p~~~~~QiF~~DPDGn~IE 61 (68)
.||+++... ..+++..+.+.||||+..=
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 224 (228)
T PRK06704 197 PTIDFTKLP-SKQPVLLFNVKQPSSYSCM 224 (228)
T ss_pred ccceeeecc-cccceEEEEeeCCCccchh
Confidence 566665432 2367788999999998643
No 344
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=28.89 E-value=35 Score=19.77 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.|++++.. ...++.||+++|.=-..
T Consensus 32 ~~Gv~e~a----vR~alsRl~~~G~L~~~ 56 (70)
T PF07848_consen 32 AFGVSESA----VRTALSRLVRRGWLESE 56 (70)
T ss_dssp CTT--HHH----HHHHHHHHHHTTSEEEE
T ss_pred HcCCChHH----HHHHHHHHHHcCceeee
Confidence 36677555 78899999999987654
No 345
>PLN02323 probable fructokinase
Probab=28.79 E-value=1.5e+02 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCceEEeeee-CC--CCeeEEEEeCCCCCe
Q 036856 24 SFGCFLLVEKGIQTFQRSL-PD--GKVKQVFFFDPDGNG 59 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~-p~--~~~~QiF~~DPDGn~ 59 (68)
+..++.|++.||+.....+ +. ++...+ +.|+||..
T Consensus 73 ~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i-~~~~~g~r 110 (330)
T PLN02323 73 HMLADILKKNGVNNEGVRFDPGARTALAFV-TLRSDGER 110 (330)
T ss_pred HHHHHHHHHcCCCCcceEEcCCCCceEEEE-EECCCCce
Confidence 4567999999999865443 33 333333 34788854
No 346
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=28.65 E-value=1.5e+02 Score=18.46 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHcCceEEe
Q 036856 21 QFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~ 39 (68)
..++++.++|+++|+.+..
T Consensus 62 ~~v~~V~~wL~~~G~~~~~ 80 (143)
T PF09286_consen 62 EDVAAVKSWLKSHGLTVVE 80 (143)
T ss_dssp HHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHHHHcCCceeE
Confidence 3478899999999998865
No 347
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=28.45 E-value=53 Score=22.01 Aligned_cols=23 Identities=26% Similarity=-0.064 Sum_probs=19.0
Q ss_pred hhccccHHHHHHHHHHcCceEEe
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+.||-+-+..++.|+++|+.++.
T Consensus 236 a~HL~G~~gvl~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 236 AGHLPGEDGVLDLLRKKGYTVEP 258 (259)
T ss_pred chhccchhhHHHHHHhCCceeec
Confidence 34777888899999999999863
No 348
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=28.30 E-value=85 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCceEEeeeeCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG 45 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~ 45 (68)
.++++.|.++|+++.-+.+|..
T Consensus 125 ~~~lk~l~~~Gv~v~~q~vP~d 146 (151)
T cd00001 125 VAAFKELAQKGVKVEIQMVPND 146 (151)
T ss_pred HHHHHHHHHcCCEEEEEECcCC
Confidence 3568899999999999888864
No 349
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=28.21 E-value=1.9e+02 Score=19.54 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDGn~IEL~ 63 (68)
+..++.|++.||.......+. ++...+ +.|+++..+.++
T Consensus 69 ~~i~~~l~~~gI~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~ 109 (304)
T cd01172 69 DLLRKLLEKEGIDTDGIVDEGRPTTTKTR-VIARNQQLLRVD 109 (304)
T ss_pred HHHHHHHHhCCCCcceEecCCCCceEEEE-EecCCcEEEEEe
Confidence 456789999999986544444 333333 456766656554
No 350
>PRK09732 hypothetical protein; Provisional
Probab=28.15 E-value=1.7e+02 Score=18.90 Aligned_cols=37 Identities=11% Similarity=-0.093 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCC
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDG 57 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDG 57 (68)
+=+++++++-++.|+++.--.+...+.-+.|.+..+-
T Consensus 14 ~~~~aA~~~A~~~g~~v~iaVvD~~G~l~a~~RmDgA 50 (134)
T PRK09732 14 AIIAAGQEEAQKNNWSVSIAVADDGGHLLALSRMDDC 50 (134)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCCEEEEEEcCCC
Confidence 3466778999999999988777777777777776553
No 351
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=27.91 E-value=39 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.5
Q ss_pred ccccHHHHHHHHHHcCceEEe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~ 39 (68)
-++|++.+++.|+++||++..
T Consensus 61 EL~HFeqV~~im~~Rgi~l~~ 81 (180)
T cd07910 61 ELQHFEQVLKIMKKRGIPLGP 81 (180)
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 378999999999999999954
No 352
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.85 E-value=84 Score=17.04 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCceEEee
Q 036856 24 SFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~ 40 (68)
.-....|++.||++..+
T Consensus 13 ~~i~~~L~~~gI~~~v~ 29 (67)
T PF09413_consen 13 ELIKGLLEENGIPAFVK 29 (67)
T ss_dssp HHHHHHHHHTT--EE--
T ss_pred HHHHHHHHhCCCcEEEE
Confidence 34568899999999764
No 353
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=27.78 E-value=84 Score=17.06 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=16.3
Q ss_pred cCceEEeeeeCCCCeeEEEEeCCCCCeE
Q 036856 33 KGIQTFQRSLPDGKVKQVFFFDPDGNGL 60 (68)
Q Consensus 33 ~GI~~~~~~~p~~~~~QiF~~DPDGn~I 60 (68)
.|=.+..+..|.. ...||+.|++| -|
T Consensus 34 ~g~~V~vryDp~d-l~~i~V~~~~g-~i 59 (62)
T PF09299_consen 34 IGQKVRVRYDPDD-LSRIYVYDEDG-FI 59 (62)
T ss_dssp S-SEEEEEE-GGG-TTEEEEEETTS-EE
T ss_pred cCCEEEEEECccc-CCEEEEEECCc-EE
Confidence 3444555555553 38899999999 54
No 354
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.62 E-value=36 Score=22.03 Aligned_cols=52 Identities=8% Similarity=-0.040 Sum_probs=33.8
Q ss_pred eEEEecChhhcccc---HHHHHHHHHHcCceEEeeeeCC--CCeeEEEEeCCCCCeE
Q 036856 9 FFSFGMSEAESLQF---LSFGCFLLVEKGIQTFQRSLPD--GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 9 ~~~~~~~~~~~l~~---l~~~~~~L~~~GI~~~~~~~p~--~~~~QiF~~DPDGn~I 60 (68)
-+-|.+++..-+.. +...+++|++.|+.+.-..... .....+.-..||..+|
T Consensus 117 ~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKl 173 (240)
T cd01948 117 RLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKI 173 (240)
T ss_pred HEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEE
Confidence 36677776665555 5778999999999996544322 2334455556776655
No 355
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=27.47 E-value=63 Score=21.12 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=15.1
Q ss_pred eEEEEeCCCCCeEEEeee
Q 036856 48 KQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f~ 65 (68)
.++|..||.|+..+..+.
T Consensus 108 ~~ly~~d~~G~~~~~~~~ 125 (189)
T cd03763 108 PHLYSIYPHGSTDKLPFV 125 (189)
T ss_pred CEEEEECCCCCEEecCEE
Confidence 699999999998876543
No 356
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=27.37 E-value=89 Score=15.89 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHHcCceEEeeeeC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
+-.=..+...|+++|++|....+.
T Consensus 10 Cp~C~~~~~~L~~~~i~~~~~di~ 33 (72)
T cd02066 10 CPYCKRAKRLLESLGIEFEEIDIL 33 (72)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Confidence 444567788899999999775543
No 357
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.16 E-value=1e+02 Score=16.97 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCceEEeeeeC
Q 036856 23 LSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p 43 (68)
-..+...|+++||+|+...+.
T Consensus 13 ~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 13 CRLVREVLTELELDVILYPCP 33 (77)
T ss_pred HHHHHHHHHHcCCcEEEEECC
Confidence 346677899999999776543
No 358
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=27.13 E-value=1.6e+02 Score=21.42 Aligned_cols=41 Identities=20% Similarity=0.031 Sum_probs=30.4
Q ss_pred cccH--HHHHHHHHHcCceEEeeeeCCCC---------------eeEEEEeCCCCCeE
Q 036856 20 LQFL--SFGCFLLVEKGIQTFQRSLPDGK---------------VKQVFFFDPDGNGL 60 (68)
Q Consensus 20 l~~l--~~~~~~L~~~GI~~~~~~~p~~~---------------~~QiF~~DPDGn~I 60 (68)
.-.. +++++.|+++|+.+.....|... .+-.|++|++|...
T Consensus 63 FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~ 120 (339)
T cd06602 63 FPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPY 120 (339)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEE
Confidence 4566 89999999999999776555422 23578999988754
No 359
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.07 E-value=1.2e+02 Score=21.86 Aligned_cols=41 Identities=20% Similarity=0.036 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCC----C-------eeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDG----K-------VKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~----~-------~~QiF~~DPDGn~ 59 (68)
+.-..+++++.|+++|+.+.....|.. . .+-+|+.++||..
T Consensus 69 ~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~ 120 (317)
T cd06594 69 RYPGLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSP 120 (317)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCe
Confidence 356789999999999999977555541 1 2236999999864
No 360
>PRK09850 pseudouridine kinase; Provisional
Probab=26.99 E-value=1.8e+02 Score=20.19 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCceEEe-eeeCC--CCeeEEEEeCCCCCe
Q 036856 24 SFGCFLLVEKGIQTFQ-RSLPD--GKVKQVFFFDPDGNG 59 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~-~~~p~--~~~~QiF~~DPDGn~ 59 (68)
+..++.|++.||+... ...+. ++.. +-+.||+|..
T Consensus 70 ~~i~~~l~~~gVd~~~~~~~~~~~T~~~-~~~~~~~g~~ 107 (313)
T PRK09850 70 QSLLTQTNQSGVYVDKCLIVPGENTSSY-LSLLDNTGEM 107 (313)
T ss_pred HHHHHHHHHcCCCchheeecCCCCceEE-EEEecCCCCE
Confidence 3457899999999864 34443 3333 3456888876
No 361
>PRK13191 putative peroxiredoxin; Provisional
Probab=26.98 E-value=86 Score=21.39 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.3
Q ss_pred CeeEEEEeCCCCCeEEEeee
Q 036856 46 KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~ 65 (68)
..+.+|+-||||........
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~ 142 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYY 142 (215)
T ss_pred eeEEEEEECCCCEEEEEEec
Confidence 46889999999998876543
No 362
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=26.78 E-value=1.3e+02 Score=16.92 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.5
Q ss_pred eEEEEeCCCCCeEEEeeecC
Q 036856 48 KQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f~~~ 67 (68)
..|=|+=|||..|+-.|..+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~ 22 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNST 22 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCC
Confidence 45678889999998887654
No 363
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=26.70 E-value=51 Score=18.40 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=9.6
Q ss_pred eeEEEEeCCCC
Q 036856 47 VKQVFFFDPDG 57 (68)
Q Consensus 47 ~~QiF~~DPDG 57 (68)
+-|+|+.||.+
T Consensus 2 VvqlY~~~~~~ 12 (71)
T PF14310_consen 2 VVQLYVSDPQS 12 (71)
T ss_dssp EEEEEEEESSS
T ss_pred EEEEEEEeCCC
Confidence 46999999987
No 364
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=26.69 E-value=1.9e+02 Score=18.83 Aligned_cols=40 Identities=18% Similarity=-0.042 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCceEEeee----------eCCCCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRS----------LPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~----------~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+.+.+.+++.|++|.... .--.++...|+-||||..+.-.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 110 QKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred HHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 556677888888764211 0113466799999999877544
No 365
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=26.67 E-value=59 Score=21.73 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.7
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..|+|..||.|+..+..+.
T Consensus 143 gp~Ly~vd~~G~~~~~~~~ 161 (213)
T cd03753 143 GPQLFHTDPSGTFTRCDAK 161 (213)
T ss_pred CCEEEEECCCCCeecccEE
Confidence 3699999999999986553
No 366
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=26.62 E-value=79 Score=17.97 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=16.8
Q ss_pred HHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 31 VEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 31 ~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
++.||.+...+.........++.+++...|-++..
T Consensus 2 e~~gi~v~~~~~~~~~~~~~~~~~~~~~~I~in~~ 36 (122)
T PF06114_consen 2 EELGIDVVYTDLGPKDLGGFSIPKENNPIIFINSN 36 (122)
T ss_dssp ---T-EEEEE--TT--EEEETT----TTEEEEESS
T ss_pred CCCCEEEEEEcCCCCCcCEEEEecCcCCEEEECCC
Confidence 46789998777777666666666666788777654
No 367
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=26.45 E-value=1.2e+02 Score=17.42 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.6
Q ss_pred CCCeeEEEEeCCCCCeEEEee
Q 036856 44 DGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 44 ~~~~~QiF~~DPDGn~IEL~f 64 (68)
..+.++|-+.|-.|+...+.|
T Consensus 69 ~~G~h~l~vvD~~G~~~~V~~ 89 (89)
T PF06832_consen 69 RPGEHTLTVVDAQGRSASVRF 89 (89)
T ss_pred CCeeEEEEEEcCCCCEEEEEC
Confidence 568899999999999887653
No 368
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=26.38 E-value=1.4e+02 Score=17.31 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=17.2
Q ss_pred CeeEEEEeCCCCCeEEEeeecC
Q 036856 46 KVKQVFFFDPDGNGLEVASRRD 67 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f~~~ 67 (68)
+...|=|+-|||..+...|..+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~ 24 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSS 24 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCC
Confidence 3567889999999998877643
No 369
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.35 E-value=2.1e+02 Score=21.61 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCceEE-eeeeC-----CCCeeEEEEeCCCCCeEEE
Q 036856 23 LSFGCFLLVEKGIQTF-QRSLP-----DGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~-~~~~p-----~~~~~QiF~~DPDGn~IEL 62 (68)
++.+.+.|+++|.++- .+.+. .....++++-|+||..+++
T Consensus 332 ~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~ 377 (399)
T PRK05579 332 LEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKL 377 (399)
T ss_pred HHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEc
Confidence 8889999999999994 34441 1346899999999986554
No 370
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=26.26 E-value=86 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.3
Q ss_pred EEEecChhhccccHHHHHHHHHHcCce
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQ 36 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~ 36 (68)
|||.+-+.+ ++.+.++|++.|..
T Consensus 3 yaFDIQ~~A----i~~T~~rL~~~~~~ 25 (140)
T PF06962_consen 3 YAFDIQEEA----IENTRERLEEAGLE 25 (140)
T ss_dssp EEEES-HHH----HHHHHHHHHHTT-G
T ss_pred EEEECHHHH----HHHHHHHHHhcCCC
Confidence 788898766 99999999999764
No 371
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=26.18 E-value=1.7e+02 Score=18.24 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCceEEeeeeCCC----------------CeeEEEEeCCCC--CeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG----------------KVKQVFFFDPDG--NGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~----------------~~~QiF~~DPDG--n~IEL~ 63 (68)
+...+.|.+.||+|+....|.. -.+-+.+.|-+| ..+=+.
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv 59 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAV 59 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEE
Confidence 3566789999999988666542 246788888665 445443
No 372
>PRK11898 prephenate dehydratase; Provisional
Probab=26.07 E-value=1e+02 Score=22.04 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn 58 (68)
-|..++..++++||.... ++.+...+...|+-|=+|+
T Consensus 210 sL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 210 ALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred HHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 488999999999999954 4555566677888887775
No 373
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=25.85 E-value=99 Score=20.75 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEe
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFF 53 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~ 53 (68)
-.+.++.||.+|+.+.+..+..++. |.|++
T Consensus 45 ~~A~~k~lkr~gv~~~egl~t~~G~-~fY~Y 74 (142)
T PF11633_consen 45 YPAFCKTLKRKGVDPKEGLQTVDGV-QFYFY 74 (142)
T ss_dssp -HHHHHHHHHTTS---SEEEES-SS-EEEEE
T ss_pred cHHHHHHHhccCcccccceEEecce-EEEEE
Confidence 5677888999999999988777554 44443
No 374
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=25.80 E-value=1e+02 Score=20.52 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=23.3
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCCeeEE-EEeCCC-CCeEEEe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGKVKQV-FFFDPD-GNGLEVA 63 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~~~Qi-F~~DPD-Gn~IEL~ 63 (68)
|...|.++.+-|++.|+.+...-+.....++. .+..|+ ++.|.|.
T Consensus 88 G~gQl~aa~~~l~~lgl~i~viglaK~~~~~t~~i~~~~~~~~i~l~ 134 (155)
T PF08459_consen 88 GKGQLNAAKEVLKELGLNIPVIGLAKNDEHKTGKIFLPGRKEPINLP 134 (155)
T ss_dssp SHHHHHHHHHHHHCTT----EEEEESSSSE----EEETTTTEEEE--
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEEEeccccccccEEECCCCcEEecC
Confidence 45578899999999999965433333222211 155554 7777764
No 375
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=25.75 E-value=1.2e+02 Score=16.26 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=12.7
Q ss_pred CCeeEEEEeCCCCCeEEEeee
Q 036856 45 GKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~f~ 65 (68)
...+-.+....+|..|.+.+.
T Consensus 39 ~~~~~~~~~~~~~~~l~Vv~~ 59 (73)
T PF14076_consen 39 GPCRLYIGGGKEGRPLHVVIA 59 (73)
T ss_pred CCeEEEEEecCCCCEEEEEEE
Confidence 445666666666666666544
No 376
>PF15121 TMEM71: TMEM71 protein family
Probab=25.73 E-value=43 Score=22.57 Aligned_cols=10 Identities=50% Similarity=0.733 Sum_probs=8.7
Q ss_pred EEEeCCCCCe
Q 036856 50 VFFFDPDGNG 59 (68)
Q Consensus 50 iF~~DPDGn~ 59 (68)
-|+.|.|||.
T Consensus 76 SFl~D~dGNI 85 (149)
T PF15121_consen 76 SFLCDEDGNI 85 (149)
T ss_pred ceeecCCCCE
Confidence 5899999995
No 377
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=25.69 E-value=23 Score=20.70 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=0.5
Q ss_pred EEEeCCCCCeE
Q 036856 50 VFFFDPDGNGL 60 (68)
Q Consensus 50 iF~~DPDGn~I 60 (68)
+-+.|||||-|
T Consensus 49 i~ivD~~G~dV 59 (65)
T PF05979_consen 49 IKIVDPDGNDV 59 (65)
T ss_dssp T----------
T ss_pred eeEECCCCCCC
Confidence 56789999865
No 378
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=25.68 E-value=61 Score=17.81 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.7
Q ss_pred EEEeCCCCCeEEEeee
Q 036856 50 VFFFDPDGNGLEVASR 65 (68)
Q Consensus 50 iF~~DPDGn~IEL~f~ 65 (68)
+++.|++|..+.+|..
T Consensus 14 i~~~d~~g~I~~~N~a 29 (113)
T PF00989_consen 14 IFVIDEDGRILYVNQA 29 (113)
T ss_dssp EEEEETTSBEEEECHH
T ss_pred EEEEeCcCeEEEECHH
Confidence 8999999999988753
No 379
>PRK10775 cell division protein FtsQ; Provisional
Probab=25.58 E-value=2.5e+02 Score=20.01 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
++.+.+..+.|+..|..+........+.+++-+. ||..|+|-
T Consensus 171 l~~~~~l~~~L~~~~~~v~~l~l~~r~~W~l~L~--nGi~v~LG 212 (276)
T PRK10775 171 LQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLN--NDIRLELG 212 (276)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEEcCCCeEEEEeC--CCeEEEEC
Confidence 4556667788999999998776666666888665 58888764
No 380
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=25.51 E-value=65 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCceEEeeeeCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD 44 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~ 44 (68)
.+.-+.|+++|.++....+|.
T Consensus 122 ~~~a~~L~~~GlDv~v~gV~A 142 (337)
T PF10023_consen 122 RAEAAELRAQGLDVYVGGVPA 142 (337)
T ss_pred HHHHHHHHHcCCceeEecccc
Confidence 445689999999999988876
No 381
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=25.47 E-value=1.2e+02 Score=19.73 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCc---eEEeeeeCC
Q 036856 23 LSFGCFLLVEKGI---QTFQRSLPD 44 (68)
Q Consensus 23 l~~~~~~L~~~GI---~~~~~~~p~ 44 (68)
++.++++|++.|+ .+....+|+
T Consensus 22 l~~a~~~l~~~g~~~~~i~~~~VPG 46 (144)
T PF00885_consen 22 LEGALEELKRHGVAEENIEVIRVPG 46 (144)
T ss_dssp HHHHHHHHHHTTTTGGCEEEEEESS
T ss_pred HHHHHHHHHHcCCCccceEEEEcCC
Confidence 5678999999999 778888886
No 382
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=25.42 E-value=1.6e+02 Score=17.52 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=12.5
Q ss_pred eEEEEeCCCCCeEEEe
Q 036856 48 KQVFFFDPDGNGLEVA 63 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~ 63 (68)
...|+-||+|..+-..
T Consensus 111 p~~~lid~~G~v~~~~ 126 (140)
T cd03017 111 RSTFLIDPDGKIVKVW 126 (140)
T ss_pred eeEEEECCCCEEEEEE
Confidence 5789999999776654
No 383
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=25.38 E-value=55 Score=16.61 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=13.5
Q ss_pred cccHHHHHHHHHHcCce
Q 036856 20 LQFLSFGCFLLVEKGIQ 36 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~ 36 (68)
...+..++++|.+.|+-
T Consensus 34 ~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 34 RTTVREALSRLEAEGLV 50 (60)
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 34577889999999984
No 384
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.37 E-value=76 Score=20.62 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.2
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
..++|..||.|..++..+
T Consensus 108 ~~~ly~~D~~G~~~~~~~ 125 (188)
T cd03764 108 GPHLYSLDPLGSIIEDKY 125 (188)
T ss_pred CCEEEEECCCCCEEEcCE
Confidence 368999999999988654
No 385
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=61 Score=22.69 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.6
Q ss_pred CeeEEEEeCCCCCeEEE
Q 036856 46 KVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL 62 (68)
..|-+|+-||||..=-+
T Consensus 123 a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 123 ALRGTFIIDPDGVIRHI 139 (194)
T ss_pred ceeEEEEECCCCeEEEE
Confidence 58899999999976433
No 386
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.12 E-value=1.5e+02 Score=21.38 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=26.2
Q ss_pred ccccceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 2 FEAGSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.|.+-++|+.|..|-.. .+...++.|++.||.--.
T Consensus 87 ie~~~~rfLi~~~P~~~---~~~~yl~eLk~~gV~~lV 121 (241)
T PTZ00393 87 IEHGKIKILILDAPTND---LLPLYIKEMKNYNVTDLV 121 (241)
T ss_pred hccCceeEEEeCCCCHH---HHHHHHHHHHHcCCCEEE
Confidence 46788999999999333 345667889999987643
No 387
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.10 E-value=1.2e+02 Score=16.02 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHcCceEEeee-eC--CCCeeEEEEeCCCCCe
Q 036856 21 QFLSFGCFLLVEKGIQTFQRS-LP--DGKVKQVFFFDPDGNG 59 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~-~p--~~~~~QiF~~DPDGn~ 59 (68)
.-|......|.+.|+.+.... .. ....-.+++.||+|..
T Consensus 12 gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~ 53 (70)
T cd04899 12 GLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP 53 (70)
T ss_pred cHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc
Confidence 347788889999999995532 22 2335566789999875
No 388
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.03 E-value=65 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.8
Q ss_pred CeeEEEEeCCCCCeEEEee
Q 036856 46 KVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f 64 (68)
+..|+|..||.|...+..+
T Consensus 111 ~~p~Ly~~d~~G~~~~~~~ 129 (193)
T cd03758 111 EGPSLYYIDYLGTLVKVPY 129 (193)
T ss_pred CCcEEEEECCCcceEECCe
Confidence 3479999999999988754
No 389
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=25.02 E-value=1.3e+02 Score=18.09 Aligned_cols=19 Identities=42% Similarity=0.783 Sum_probs=15.1
Q ss_pred eeEEEEeC----CCCCeEEEeee
Q 036856 47 VKQVFFFD----PDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~D----PDGn~IEL~f~ 65 (68)
.|-+|+.| |+|..+||...
T Consensus 3 qwevfvmd~aelpegk~lelsvr 25 (84)
T TIGR02725 3 QWEVFVMDLAELPEGKELELSVR 25 (84)
T ss_pred ceEEEEecHHHCCCCceEEEEEe
Confidence 46789998 58999999753
No 390
>PTZ00056 glutathione peroxidase; Provisional
Probab=24.97 E-value=2.2e+02 Score=19.03 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=12.7
Q ss_pred EEEEeCCCCCeEEEe
Q 036856 49 QVFFFDPDGNGLEVA 63 (68)
Q Consensus 49 QiF~~DPDGn~IEL~ 63 (68)
..|+-|++|+.+...
T Consensus 147 ~tflID~~G~iv~~~ 161 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF 161 (199)
T ss_pred EEEEECCCCcEEEEe
Confidence 489999999998654
No 391
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.97 E-value=67 Score=21.20 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=15.8
Q ss_pred CeeEEEEeCCCCCeEEEee
Q 036856 46 KVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~f 64 (68)
+..++|..||.|+..+..+
T Consensus 113 ~gp~Ly~~D~~G~~~~~~~ 131 (197)
T cd03760 113 GEPFLGYVDLLGTAYEDPH 131 (197)
T ss_pred CCEEEEEEcCCccEEECCE
Confidence 3479999999999988654
No 392
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=24.96 E-value=1.4e+02 Score=22.47 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCC
Q 036856 22 FLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn 58 (68)
-|..++..+..+||.... ++.+...+..+|+-|=+|.
T Consensus 310 aL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 310 ALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred HHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 378899999999999854 6666777888999998885
No 393
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=24.91 E-value=1.3e+02 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.+++.|++.|+++.. . + -+++.+.+++-+ |++.+-
T Consensus 14 ~e~~~~lL~~aG~~~~~-~-~---~r~l~~~~~~~~-I~~~~v 50 (290)
T COG0040 14 SEPALELLAKAGIKISA-L-D---SRKLIAETENPP-IELLLV 50 (290)
T ss_pred chHHHHHHHHcCCCccC-C-C---CcceEEecCCCC-eEEEEE
Confidence 46789999999999975 1 1 366777777666 777764
No 394
>cd01902 Ntn_CGH Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile. CGH is present in a number of probiotic microbial organisms that inhabit the gut. CGH has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which CGH belongs.
Probab=24.89 E-value=2.5e+02 Score=19.99 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=30.1
Q ss_pred hhccccHHHHHHHHHHcCceEEeeeeCC---CCeeEEEEeCCCCCeEEEee
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQRSLPD---GKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p~---~~~~QiF~~DPDGn~IEL~f 64 (68)
++.+..++++++.|++..+... ...+. ..--...|.|+.|+.+-+-+
T Consensus 107 L~~~~tV~Ea~~~l~~~~i~~~-~~~~~~~~~~~lH~~i~D~tG~s~VIE~ 156 (291)
T cd01902 107 LDNYATVEEAVKALAKEPFVIV-ASVPGDGREATLHLSISDATGDSAIIEY 156 (291)
T ss_pred HhcCCCHHHHHHHHhcCceEEe-ecCCCCCCcccEEEEEEcCCCCEEEEEE
Confidence 4456677888899987655543 12222 22467889999997665443
No 395
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=24.84 E-value=1.3e+02 Score=16.47 Aligned_cols=26 Identities=23% Similarity=-0.010 Sum_probs=20.0
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.-+-+| =..+..+.+.|++.|++|..
T Consensus 36 ~dv~V~----p~~~~~f~~~L~~~~i~~~v 61 (74)
T PF02244_consen 36 VDVMVP----PEKLEEFEELLKEHGIEYEV 61 (74)
T ss_dssp EEEEEE----GGGHHHHHHHHHHTT-EEEE
T ss_pred EEEEEC----HHHHHHHHHHHHHCCCcEEE
Confidence 445566 56799999999999999975
No 396
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.82 E-value=1.6e+02 Score=21.17 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCC------------CeeEEEEeCCCCCeE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDG------------KVKQVFFFDPDGNGL 60 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~------------~~~QiF~~DPDGn~I 60 (68)
.-..++++++|+++|+.+.....|.. ..+-.|+.+++|...
T Consensus 63 fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~ 115 (339)
T cd06604 63 FPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELY 115 (339)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEE
Confidence 45678999999999999976554431 123578899998653
No 397
>PLN02268 probable polyamine oxidase
Probab=24.62 E-value=67 Score=23.32 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=24.1
Q ss_pred hccccHHHHHHHHHHcCceEEe---eeeCCCCeeEEEEeCCCCCeEEE
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQ---RSLPDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~---~~~p~~~~~QiF~~DPDGn~IEL 62 (68)
.|+.+|.++ .+|+++|.++.. +....+.++.. ..+|..+|+
T Consensus 8 aGisGL~aA-~~L~~~g~~v~vlEa~~r~GGri~t~---~~~g~~~d~ 51 (435)
T PLN02268 8 GGIAGIAAA-RALHDASFKVTLLESRDRIGGRVHTD---YSFGFPVDM 51 (435)
T ss_pred CCHHHHHHH-HHHHhCCCeEEEEeCCCCCCceeeec---CcCCcccCC
Confidence 467788877 567778887743 33344544442 235655554
No 398
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.60 E-value=35 Score=19.02 Aligned_cols=21 Identities=14% Similarity=-0.066 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHcCceEEee
Q 036856 20 LQFLSFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~ 40 (68)
.+-++++++.|..+|.--...
T Consensus 28 ~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHHHHHHHCCcEEEec
Confidence 556899999999999766443
No 399
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=24.56 E-value=46 Score=20.61 Aligned_cols=21 Identities=29% Similarity=0.029 Sum_probs=15.9
Q ss_pred hhhccccHHHHHHHHHHcCce
Q 036856 16 EAESLQFLSFGCFLLVEKGIQ 36 (68)
Q Consensus 16 ~~~~l~~l~~~~~~L~~~GI~ 36 (68)
++++-+.|+.+++.|+++|+=
T Consensus 77 ~a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 77 EAPDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp EESSHHHHHHHHHHHHHTT-B
T ss_pred EECCHHHHHHHHHHHHHCCCc
Confidence 455566799999999999973
No 400
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=24.55 E-value=1e+02 Score=20.65 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.0
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
.+..|+-||||+......
T Consensus 119 ~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 119 DRATFVVDPQGIIQAIEV 136 (187)
T ss_pred eeEEEEECCCCEEEEEEE
Confidence 388999999999887754
No 401
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=24.39 E-value=94 Score=19.38 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=13.1
Q ss_pred EEEeCCCCCeEEEee
Q 036856 50 VFFFDPDGNGLEVAS 64 (68)
Q Consensus 50 iF~~DPDGn~IEL~f 64 (68)
.|+-||||..+...-
T Consensus 123 tflID~~G~v~~~~~ 137 (153)
T TIGR02540 123 KYLVNPEGQVVKFWR 137 (153)
T ss_pred EEEEcCCCcEEEEEC
Confidence 899999999998753
No 402
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=24.34 E-value=1.2e+02 Score=20.68 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
-++..+.-+++|..+..+.+|.++ +..++....||.-|+..+
T Consensus 112 n~~~~~~ak~~g~~v~~Kr~p~~P-r~a~~v~~~~~~p~~~~p 153 (160)
T PTZ00189 112 NDAIKAEAKKKGELPSTKRQPAQP-RPAGFVKPKPTEVVTVRP 153 (160)
T ss_pred hHHHHHHHHHcCCccccccCCCCC-CCceEEecCCCceeEecc
Confidence 345567778889999888877755 445555778887777643
No 403
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=24.33 E-value=58 Score=20.15 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=20.6
Q ss_pred ccHHHHH-HHHHHcCceEEeeeeCCCCeeEEEEeCCCC--CeEEEeee
Q 036856 21 QFLSFGC-FLLVEKGIQTFQRSLPDGKVKQVFFFDPDG--NGLEVASR 65 (68)
Q Consensus 21 ~~l~~~~-~~L~~~GI~~~~~~~p~~~~~QiF~~DPDG--n~IEL~f~ 65 (68)
+.+.... +-+++.|+.. +...-=|+.|||| ..||+|..
T Consensus 138 ~~~~~~~~~~~~~~g~~~-------G~~~id~~~~~~g~~~~iEiN~R 178 (184)
T PF13535_consen 138 EELRDLARKLLRALGYRN-------GFFHIDFIVDPDGELYFIEINPR 178 (184)
T ss_dssp HHHHHHHHHHHHHHT--S-------EEEEEEEEEETCCEEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCce-------EEEEEEEEEeCCCCEEEEEECcc
Confidence 3344443 3346667641 2223347888888 68888854
No 404
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=24.27 E-value=2e+02 Score=18.31 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHHcCceEEe----------------e-ee-C-CCCeeEEEEeCCCCCeEEEeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQ----------------R-SL-P-DGKVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~----------------~-~~-p-~~~~~QiF~~DPDGn~IEL~f~ 65 (68)
.+.+.++.++.|++.|+.+-. . .+ + +.+...+.|..|+...||+..+
T Consensus 117 ~i~Ne~el~~~l~~~~~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~ 182 (206)
T PF04577_consen 117 RILNEDELLEILKKYGFEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPP 182 (206)
T ss_pred cCcCHHHHHHHHhhCCeEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCC
Confidence 355667777888888877533 1 11 2 2456777788999999999644
No 405
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=24.26 E-value=2.4e+02 Score=19.29 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCceEEeeeeCCC--CeeEEEEeCCCCCeEEEeee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG--KVKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~--~~~QiF~~DPDGn~IEL~f~ 65 (68)
+..++.|++.||..+....... ......+.||+|...-+...
T Consensus 67 ~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~ 110 (311)
T COG0524 67 EFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYR 110 (311)
T ss_pred HHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEEC
Confidence 4578999999999965444332 33455666777777665543
No 406
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=24.23 E-value=1.5e+02 Score=17.14 Aligned_cols=18 Identities=11% Similarity=-0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHcCceEEeeee
Q 036856 25 FGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~~~ 42 (68)
.+.-.|+..|++|+....
T Consensus 22 kv~~~L~elglpye~~~~ 39 (74)
T cd03079 22 AVQTFLKMCNLPFNVRCR 39 (74)
T ss_pred HHHHHHHHcCCCcEEEec
Confidence 567889999999976543
No 407
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=24.08 E-value=2.3e+02 Score=19.37 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCceEEee-eeCCCC-eeEEEEeCCCCCeE
Q 036856 24 SFGCFLLVEKGIQTFQR-SLPDGK-VKQVFFFDPDGNGL 60 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~-~~p~~~-~~QiF~~DPDGn~I 60 (68)
+...+.|++.||+.... ..+... ...+-+.|++|...
T Consensus 58 ~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~ 96 (304)
T PRK09434 58 RFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERS 96 (304)
T ss_pred HHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEe
Confidence 34678999999998543 334422 23344457777543
No 408
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=23.99 E-value=1.2e+02 Score=18.09 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IE 61 (68)
...|...++..+++|+-+..... |+..---+=+.|++|..+=
T Consensus 53 ~~~l~~~l~~ir~~Gya~~~~~~~~gv~~iA~Pi~~~~g~~~~ 95 (129)
T PF01614_consen 53 PEELRQELAEIRERGYAVSDGEYEPGVAAIAVPIFDPNGQVVA 95 (129)
T ss_dssp HHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEEETTSCEEE
T ss_pred HHHHHHHHHHHHHhcccccchhcccccceEEEEEECCCCCEEE
Confidence 56678889999999999976543 4434455778888887753
No 409
>PRK06769 hypothetical protein; Validated
Probab=23.98 E-value=79 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.2
Q ss_pred cccHHHHHHHHHHcCceEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~ 39 (68)
+.+..+++++|+++|+++-.
T Consensus 30 ~pgv~e~L~~Lk~~G~~l~I 49 (173)
T PRK06769 30 FPFTKASLQKLKANHIKIFS 49 (173)
T ss_pred CCCHHHHHHHHHHCCCEEEE
Confidence 57889999999999988844
No 410
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=23.94 E-value=86 Score=18.89 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=23.5
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.+|..+.+-|+-+..+-++|+..||.--.
T Consensus 28 ~IHl~~~~~l~~IQrAaRkLd~qGI~~V~ 56 (77)
T PF12404_consen 28 TIHLSEGDDLRAIQRAARKLDGQGIKNVA 56 (77)
T ss_pred EEEECCCcchHHHHHHHHHHhhCCCceEE
Confidence 45557777799999999999999998643
No 411
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=23.65 E-value=1.3e+02 Score=15.92 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=16.4
Q ss_pred cChhhccccHHHHHHHHHHcCceEEe
Q 036856 14 MSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 14 ~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
||...+ .-++.+.+.|++.|+.+..
T Consensus 3 vPd~~g-~~~~~a~~~l~~~g~~~~~ 27 (63)
T PF03793_consen 3 VPDLVG-MTYDEAKSILEAAGLTVNV 27 (63)
T ss_dssp E-TTTT-SBHHHHHHHHHHTT-EEEE
T ss_pred CCCcCC-CcHHHHHHHHHHCCCEEEE
Confidence 443333 3478899999999997744
No 412
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=23.61 E-value=91 Score=23.95 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=23.1
Q ss_pred cceeeEEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 5 GSLQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+-+||+|.-.+ .+-.+++.|+++|.++-.
T Consensus 261 ~GvQHiaL~te------dIi~Ai~~lr~rG~eFLs 289 (381)
T KOG0638|consen 261 AGVQHIALNTE------DIIEAIRGLRARGGEFLS 289 (381)
T ss_pred Cceeeeeecch------HHHHHHHHHHhcCCcccc
Confidence 45899998876 577888888888888853
No 413
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.60 E-value=1.4e+02 Score=16.28 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHcCceEEeeeeC
Q 036856 21 QFLSFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~~~p 43 (68)
.+..+.-+.|++.|++++.-..|
T Consensus 5 ~G~~a~~~~L~~~g~~v~~~~~~ 27 (70)
T PF14258_consen 5 NGTYALYQLLEEQGVKVERWRKP 27 (70)
T ss_pred hHHHHHHHHHHHCCCeeEEeccc
Confidence 45677788899999999764444
No 414
>PRK13190 putative peroxiredoxin; Provisional
Probab=23.58 E-value=1.3e+02 Score=20.14 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.5
Q ss_pred CeeEEEEeCCCCCeEEEe
Q 036856 46 KVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~ 63 (68)
..+.+|+-||||......
T Consensus 116 ~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred EEeEEEEECCCCEEEEEE
Confidence 368999999999876554
No 415
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=23.46 E-value=42 Score=22.78 Aligned_cols=24 Identities=17% Similarity=-0.043 Sum_probs=15.9
Q ss_pred hccccHHHHHHHHHHcCceEEeee
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~ 41 (68)
.|-+||.+..+.|+..|+.|....
T Consensus 126 gS~NHLrAF~r~L~~~g~~Y~pq~ 149 (162)
T PF09968_consen 126 GSRNHLRAFVRQLERYGVTYTPQY 149 (162)
T ss_dssp HHHHHHHHHHHHHHHTT-----SS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCee
Confidence 346899999999999999997644
No 416
>CHL00098 tsf elongation factor Ts
Probab=23.38 E-value=61 Score=22.49 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHcCceEEeeee---CCCCeeEEEEeC--CCCCeEEEeee
Q 036856 22 FLSFGCFLLVEKGIQTFQRSL---PDGKVKQVFFFD--PDGNGLEVASR 65 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~---p~~~~~QiF~~D--PDGn~IEL~f~ 65 (68)
.++.++++|+++|+.--.+.. ...+.-.+|++. --|..|||+..
T Consensus 29 d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~E 77 (200)
T CHL00098 29 DFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCE 77 (200)
T ss_pred CHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecC
Confidence 689999999999987733222 224556678763 24677888763
No 417
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=23.38 E-value=2.5e+02 Score=21.08 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCceEEeeeeCCC-CeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDG-KVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~-~~~QiF~~DPDGn~IEL~f 64 (68)
+..++.|++.||.+....+... .-.-+-+.||||..--+.+
T Consensus 164 ~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~ 205 (426)
T PLN02813 164 DFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSY 205 (426)
T ss_pred HHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeec
Confidence 3467899999999865444432 2234446788887654443
No 418
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=86 Score=21.02 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.8
Q ss_pred CCeeEEEEeCCCCCeEEEe
Q 036856 45 GKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~ 63 (68)
+..|..|+-||||......
T Consensus 118 ~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 118 GIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred cccceEEEECCCCeEEEEe
Confidence 3578999999999987765
No 419
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=23.29 E-value=1.6e+02 Score=17.01 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=18.2
Q ss_pred CCeeEEEEeCCCCCeEEEeeec
Q 036856 45 GKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
...-+|++++++|..+.+....
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~ 30 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKR 30 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcC
Confidence 5678999999999999887543
No 420
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.28 E-value=2.4e+02 Score=19.98 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=20.3
Q ss_pred HHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 26 GCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 26 ~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.++++.||+. -.+|..|||.-.|=+.+
T Consensus 52 il~~a~~~GV~~----------P~v~dvD~~~~~I~me~ 80 (204)
T COG3642 52 ILAKAREAGVPV----------PIVYDVDPDNGLIVMEY 80 (204)
T ss_pred HHHHHHHcCCCC----------CeEEEEcCCCCEEEEEE
Confidence 466777777764 46899999986665544
No 421
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.15 E-value=1.6e+02 Score=16.67 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.0
Q ss_pred hccccHHHHHHHHHHcCceEEeeeeC---CC-CeeEEEEeCCCCC
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSLP---DG-KVKQVFFFDPDGN 58 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~p---~~-~~~QiF~~DPDGn 58 (68)
++-.=|..+...|.++|+.+..-.+- ++ -.-.+++.||+|.
T Consensus 9 Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 9 DRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred CCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 33445788889999999999664332 22 2556888899877
No 422
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=23.01 E-value=1.5e+02 Score=18.23 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeC
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFD 54 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~D 54 (68)
.+..++.+|.++|.-.+.+.-.+...+.|++++
T Consensus 62 tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~ 94 (144)
T PRK03573 62 SLVRTLDQLEEKGLISRQTCASDRRAKRIKLTE 94 (144)
T ss_pred hHHHHHHHHHHCCCEeeecCCCCcCeeeeEECh
Confidence 356679999999998877654445556666654
No 423
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=22.92 E-value=74 Score=19.60 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHcCceEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~ 39 (68)
..++..++++|+++|+++-.
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i 50 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLAL 50 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEE
Confidence 56888999999999998743
No 424
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=22.86 E-value=88 Score=19.54 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.6
Q ss_pred EEEEeCCCCCeEEEe
Q 036856 49 QVFFFDPDGNGLEVA 63 (68)
Q Consensus 49 QiF~~DPDGn~IEL~ 63 (68)
..|+-||||..+.-.
T Consensus 125 ttflId~~G~i~~~~ 139 (152)
T cd00340 125 TKFLVDRDGEVVKRF 139 (152)
T ss_pred EEEEECCCCcEEEEE
Confidence 589999999998653
No 425
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=22.85 E-value=1.1e+02 Score=17.22 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=10.5
Q ss_pred EEEEeCCCCCeEEEee
Q 036856 49 QVFFFDPDGNGLEVAS 64 (68)
Q Consensus 49 QiF~~DPDGn~IEL~f 64 (68)
.++|+|++|+.+-+..
T Consensus 11 ~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKV 26 (54)
T ss_dssp EEEEE-TTS-EEEEEG
T ss_pred eeEEECCCCCEEEEEh
Confidence 4577899999987653
No 426
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=22.82 E-value=2.1e+02 Score=19.13 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCceEEeeeeCC--------------CCeeEEEEeCC--CCCeE
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD--------------GKVKQVFFFDP--DGNGL 60 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~--------------~~~~QiF~~DP--DGn~I 60 (68)
.+.++.|+.+|+.+.+..-+. .++.--|+-|+ ++|.-
T Consensus 67 ~aL~~aLR~~GYaV~e~~~~~~~~~~~~~~~~~~~~~~~L~Yvvd~~~~~~ly 119 (151)
T PRK13883 67 QALVKALRDKGYALLEYNPAGASAAAPAAAASAASGGLPLRYVLDQAGDSNLY 119 (151)
T ss_pred HHHHHHHHHcCeEEEecCCccccccccccccccccCCcceEEEEecCCCceEE
Confidence 456799999999997633221 45566778887 44443
No 427
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.79 E-value=3.3e+02 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHHHc----CceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 27 CFLLVEK----GIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 27 ~~~L~~~----GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.|++. ...+.......+++..+=+.-+||..||=..
T Consensus 55 r~~L~~~~~~~~~~~~~~~~s~dgt~K~l~~l~Dg~~iEtV~ 96 (342)
T PRK14465 55 KEKLEELCSLTELEVVKDLKSVDGTQKFTFYSGEGKEFEAVW 96 (342)
T ss_pred HHHHhcccccCCccEEEEEEcCCCcEEEEEEcCCCCEEEEEE
Confidence 4555554 2333334444454555555889999999664
No 428
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=22.68 E-value=1.1e+02 Score=16.48 Aligned_cols=20 Identities=15% Similarity=-0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCceEEeeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~ 42 (68)
-..+...|.++||+|+...+
T Consensus 13 c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 13 CCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred HHHHHHHHHHCCCceEEEEC
Confidence 45678899999999977543
No 429
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=22.63 E-value=1.6e+02 Score=19.70 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGN 58 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn 58 (68)
.+--+++..+|+++|+-|-..++-.+.+.-|++.-|-|.
T Consensus 128 ~~i~~~i~~~L~~~Gl~f~GiDvig~~l~EiNvtsp~g~ 166 (173)
T PF02955_consen 128 REICEQIGPKLREDGLLFVGIDVIGDKLTEINVTSPTGI 166 (173)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEETTEEEEEE-SS---H
T ss_pred HHHHHHHHHHHhhcCcEEEEEeccccceEEEeccCchhH
Confidence 344455678999999999998888888888888888763
No 430
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=22.58 E-value=84 Score=20.61 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCC
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDG 57 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDG 57 (68)
+..++.+.++|++.|..+... .-..-+|+..|++
T Consensus 10 v~d~~~~~~~L~~~g~~~~~~----~~q~D~Yfd~p~~ 43 (174)
T TIGR00318 10 IPDKEKVVEKLKNKGFKFIKK----EFQHDIYFSNPCR 43 (174)
T ss_pred cCCHHHHHHHHHhcCcccccc----cceEEEeecCCCc
Confidence 446888999999998654321 1223356666654
No 431
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=22.50 E-value=1.1e+02 Score=23.82 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHcCceEEeeeeCCCCeeEEEE
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPDGKVKQVFF 52 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~ 52 (68)
..+..-+.|++.||++.. |.++ +|+|+
T Consensus 324 ~~~~l~~~L~~~Gvpv~~---p~gg-H~v~v 350 (460)
T PRK13237 324 QVRYLGEKLLAAGVPIVE---PVGG-HAVFL 350 (460)
T ss_pred HHHHHHHHHHHCCCceec---CCCc-eEEEE
Confidence 344456889999999974 4333 88877
No 432
>PRK03381 PII uridylyl-transferase; Provisional
Probab=22.49 E-value=2.3e+02 Score=23.23 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=31.8
Q ss_pred hhccccHHHHHHHHHHcCceEEeeeeC-C--CCeeEEEEeCCCCCeEE
Q 036856 17 AESLQFLSFGCFLLVEKGIQTFQRSLP-D--GKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 17 ~~~l~~l~~~~~~L~~~GI~~~~~~~p-~--~~~~QiF~~DPDGn~IE 61 (68)
.|+--=|..+-..|.+.|+.+..-.+- . .-.-.+|+.|++|..|+
T Consensus 715 ~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 715 ADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred CCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 343344677889999999999664332 2 23667889999999874
No 433
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=22.49 E-value=83 Score=19.75 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHcCceEEee
Q 036856 21 QFLSFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~ 40 (68)
.-++++++-|++.|++|+..
T Consensus 21 ~yVa~~i~~lk~~glky~~~ 40 (100)
T COG0011 21 KYVAEAIEILKESGLKYQLG 40 (100)
T ss_pred HHHHHHHHHHHHcCCceeec
Confidence 45788999999999999753
No 434
>PTZ00292 ribokinase; Provisional
Probab=22.44 E-value=2.7e+02 Score=19.26 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCceEEee-eeCC--CCeeEEEEeC-CCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQR-SLPD--GKVKQVFFFD-PDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~-~~p~--~~~~QiF~~D-PDGn~IEL~ 63 (68)
+..++.|++.||+.+.. ..+. ++.. +.+.| ++|...-+.
T Consensus 82 ~~i~~~l~~~GI~~~~~~~~~~~~t~~~-~~~~~~~~g~~~~~~ 124 (326)
T PTZ00292 82 SDTIKNFKRNGVNTSFVSRTENSSTGLA-MIFVDTKTGNNEIVI 124 (326)
T ss_pred HHHHHHHHHcCCChhhEEEcCCCCCcEE-EEEEeCCCCceEEEE
Confidence 45678999999998654 3343 3433 44445 788775443
No 435
>PRK00031 lolA lipoprotein chaperone; Reviewed
Probab=22.37 E-value=1.5e+02 Score=19.28 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCeeEEEEeCCCCCeEEEeeec
Q 036856 44 DGKVKQVFFFDPDGNGLEVASRR 66 (68)
Q Consensus 44 ~~~~~QiF~~DPDGn~IEL~f~~ 66 (68)
....+++=+.|++|+.+++.|..
T Consensus 148 ~~~i~~i~i~d~~g~~t~i~f~~ 170 (195)
T PRK00031 148 NGTLASFSLVDQDGQRTLITFSN 170 (195)
T ss_pred CCeEEEEEEEcCCCCEEEEEecc
Confidence 34578889999999999998764
No 436
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=22.33 E-value=1.2e+02 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=19.0
Q ss_pred hccccHHHHHHHHHHcCceEEeeee
Q 036856 18 ESLQFLSFGCFLLVEKGIQTFQRSL 42 (68)
Q Consensus 18 ~~l~~l~~~~~~L~~~GI~~~~~~~ 42 (68)
+||.+=.+.+++|+++||++...+.
T Consensus 181 AGLHFt~~ll~~l~~kGv~~a~vTL 205 (341)
T PF02547_consen 181 AGLHFTEELLERLKAKGVEIAFVTL 205 (341)
T ss_dssp GGGG--HHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHCCCeEEEEEE
Confidence 4588888899999999999976544
No 437
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=22.30 E-value=89 Score=20.01 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=16.9
Q ss_pred cccHHHHHHHHHHcCceEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~ 39 (68)
..++.+++++|+++|+++-.
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i 47 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVL 47 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEE
Confidence 45788999999999999854
No 438
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.13 E-value=1.7e+02 Score=16.82 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=9.4
Q ss_pred HHHHHcCceEEeeee
Q 036856 28 FLLVEKGIQTFQRSL 42 (68)
Q Consensus 28 ~~L~~~GI~~~~~~~ 42 (68)
+.|+++||++....+
T Consensus 71 ~~l~~~gi~~~~~~Q 85 (114)
T PF02373_consen 71 EQLKKAGIPVYRFVQ 85 (114)
T ss_dssp HHHHHTTS--EEEEE
T ss_pred eeeeccCcccccceE
Confidence 459999999977433
No 439
>PF10099 RskA: Anti-sigma-K factor rskA; InterPro: IPR018764 RskA (regulator of sigma K) represses the extra-cytoplasmic function (ECF) sigma factor K (sigK) by binding to it and inhibiting its activity []. This leads to a decreased expression of SigK-regulated genes, such as mpt70 and mpt83. RskA is found in various Mycobacterium, such as Mycobacterium tuberculosis. However, in Mycobacterium bovis it is probably dysfunctional, due to at least one of the two natural occurring polymorphisms in its encoding gene, when compared to M. tuberculosis []. This leads to an increased expression of SigK-regulated genes.; GO: 0005886 plasma membrane, 0016021 integral to membrane
Probab=22.13 E-value=1e+02 Score=19.41 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=17.1
Q ss_pred eeCCCCeeEEEEeCCCCCeEEE
Q 036856 41 SLPDGKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 41 ~~p~~~~~QiF~~DPDGn~IEL 62 (68)
..|.+...|+|+.++||..+=+
T Consensus 104 ~~p~~~~yqlW~i~~~g~p~s~ 125 (175)
T PF10099_consen 104 PLPAGKVYQLWLIPDDGKPVSL 125 (175)
T ss_pred CCCCCcEEEEEEECCCCCeEee
Confidence 3456889999999998877644
No 440
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=22.09 E-value=2.8e+02 Score=19.21 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEe
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
-+.-++.++.|+++|..+.+.. ..-|+.+++|..|-+.
T Consensus 51 ~~~~~~l~~~L~~~G~~ite~~------~~~~l~~~~g~llDlH 88 (174)
T PF10706_consen 51 REDQAELRALLKELGYRITETT------DYGFLADDDGRLLDLH 88 (174)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEE------TEEEEEETTTEEEEEE
T ss_pred cchhHHHHHHHHHCCCEEEEec------cccEEEcCCCCEEEeE
Confidence 3446788899999999886632 2345777777655443
No 441
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=22.05 E-value=1.6e+02 Score=16.39 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=27.9
Q ss_pred EEecChhhccccHHHHHHHHHHcCceEEe-eeeCC--CCeeEEEEeCCCCC
Q 036856 11 SFGMSEAESLQFLSFGCFLLVEKGIQTFQ-RSLPD--GKVKQVFFFDPDGN 58 (68)
Q Consensus 11 ~~~~~~~~~l~~l~~~~~~L~~~GI~~~~-~~~p~--~~~~QiF~~DPDGn 58 (68)
.|.++.. ---|..++..++++||.+.. ...|. ....-.|+-|=+|.
T Consensus 5 ~~~~~d~--~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 5 VFTLPNK--PGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEECCC--CCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 3444433 33499999999999999843 33343 33344555565553
No 442
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=22.03 E-value=1.3e+02 Score=21.65 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=19.7
Q ss_pred HHHHHHHcCceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 26 GCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 26 ~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.+.++.+.||.. -++|+.|+.++.|=+-|
T Consensus 63 ~l~k~~~~GI~~----------P~l~~~D~~~~~i~ME~ 91 (229)
T KOG3087|consen 63 LLAKCRALGIPA----------PRLIFIDTYGGQIYMEF 91 (229)
T ss_pred HHHHHHHhCCCC----------ceEEEEecCCCeEEEEe
Confidence 356666667654 46888899888875543
No 443
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=22.00 E-value=2.3e+02 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHcCceEEe
Q 036856 21 QFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~ 39 (68)
..+..++..|++.||++..
T Consensus 68 ~EV~pvi~aL~~~GI~vtA 86 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTA 86 (123)
T ss_pred HHHHHHHHHHHHCCceEEE
Confidence 3578899999999999976
No 444
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.95 E-value=1.7e+02 Score=17.04 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=17.2
Q ss_pred CCCeeEEEEeCCCCCeEEEe
Q 036856 44 DGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 44 ~~~~~QiF~~DPDGn~IEL~ 63 (68)
..+.-.||=.|||-|.|.|.
T Consensus 37 e~~~iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 37 EDGQIKIFKYDEDTNEITLK 56 (63)
T ss_dssp ETTEEEEEEEETTTTEEEEE
T ss_pred cCCeEEEEEeCCCCCeEEEE
Confidence 45667899999999999987
No 445
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=21.95 E-value=1e+02 Score=14.14 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.1
Q ss_pred EEEeCCCCCeEEEe
Q 036856 50 VFFFDPDGNGLEVA 63 (68)
Q Consensus 50 iF~~DPDGn~IEL~ 63 (68)
+++.|++|..+.++
T Consensus 5 i~~~d~~~~~~~~n 18 (103)
T cd00130 5 VIVLDLDGRILYAN 18 (103)
T ss_pred EEEECCCCcEEEEC
Confidence 67889999887765
No 446
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=21.95 E-value=2.8e+02 Score=19.12 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCeEEEee
Q 036856 24 SFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~IEL~f 64 (68)
+..++.|++.||....... +.++....++ ++|+...+..
T Consensus 64 ~~i~~~l~~~GV~~~~~~~~~~t~~~~~~~--~~g~~~~~~~ 103 (309)
T TIGR01231 64 EFIEKELDHSDIKHAFYKISGETRNCIAIL--HEGQQTEILE 103 (309)
T ss_pred HHHHHHHHHcCCceeEEECCCCCEEeEEEE--eCCCEEEEeC
Confidence 4568899999999865433 3344444444 3677766543
No 447
>PRK14681 hypothetical protein; Provisional
Probab=21.86 E-value=2.6e+02 Score=18.74 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHHHcCceEEeeee-CCCCeeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSL-PDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~-p~~~~~QiF~~DPDGn~ 59 (68)
|..+-+.+.+.|+++|+.+-.+-. -..+.--|-..|.+|..
T Consensus 46 G~~gE~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~~L 87 (158)
T PRK14681 46 GALGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEYTI 87 (158)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCceE
Confidence 445556688999999999966433 33455667778876644
No 448
>PRK13189 peroxiredoxin; Provisional
Probab=21.86 E-value=1.3e+02 Score=20.61 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.5
Q ss_pred CeeEEEEeCCCCCeEEEe
Q 036856 46 KVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 46 ~~~QiF~~DPDGn~IEL~ 63 (68)
..+.+|+-||||......
T Consensus 125 ~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred ceeEEEEECCCCeEEEEE
Confidence 468899999999886554
No 449
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=21.85 E-value=2.1e+02 Score=20.62 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCceEEeeeeCCCCeeEEEEeCCCC
Q 036856 24 SFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDPDG 57 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DPDG 57 (68)
++++++|++.|.-+....-..+. .+-| ..|||
T Consensus 153 ~~~l~~l~~ngqvvfrY~d~~G~-~~~~-~NPNG 184 (231)
T COG0047 153 DETLAELEENGQVVFRYVDNNGE-TEEY-ANPNG 184 (231)
T ss_pred HHHHHHHhhCCeEEEEEecCCCc-eeee-eCCCC
Confidence 45889999998777655433333 4555 56655
No 450
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.80 E-value=54 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=13.6
Q ss_pred ecChhhccccHHHHHHHHHHcCc
Q 036856 13 GMSEAESLQFLSFGCFLLVEKGI 35 (68)
Q Consensus 13 ~~~~~~~l~~l~~~~~~L~~~GI 35 (68)
+++...-...+...++.|.++|+
T Consensus 44 ~~~~~~~~~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 44 DVDPEEAEEDVEEFLEQLREKGL 66 (68)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHCcC
Confidence 44444445667777888888775
No 451
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=21.75 E-value=91 Score=19.18 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCceEEe-e----eeCCCCeeEEEEeCCCCCeEE
Q 036856 24 SFGCFLLVEKGIQTFQ-R----SLPDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~-~----~~p~~~~~QiF~~DPDGn~IE 61 (68)
+.+.+.+..+...|-. . .....+.-.+++.||||..+-
T Consensus 22 Ddty~~~~~~~~~~~~~N~~~~~~~~~~~d~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 22 DDTYDFVQDPDPDWIDENLGPELFENFGLDLIFILDPDGRVLY 64 (161)
T ss_pred HHHHHHHHhcCHHHHHHhcChhhhhhcCccEEEEEcCCCCEEE
Confidence 3345555555444421 1 123367888999999999884
No 452
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=21.74 E-value=1.3e+02 Score=18.02 Aligned_cols=16 Identities=19% Similarity=-0.130 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCceEEe
Q 036856 24 SFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~ 39 (68)
-..++.|+++|+++..
T Consensus 20 ~~l~~~L~~~g~~V~~ 35 (106)
T PF03720_consen 20 LELIEELKERGAEVSV 35 (106)
T ss_dssp HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 3468999999997654
No 453
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.72 E-value=2.8e+02 Score=20.51 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHHHHc----CceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 27 CFLLVEK----GIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 27 ~~~L~~~----GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.++|++. .+.+.......+++..+=|.-.||+.||=..
T Consensus 55 r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~~~~dg~~iE~V~ 96 (349)
T PRK14463 55 RAELEETARISNLEPEAVEVSRDGTRKYLFRLEDGNAVESVL 96 (349)
T ss_pred HHhhcCCeeecCcceeEEEEcCCCcEEEEEEcCCCCeEEEEE
Confidence 4555554 2333333344455555556778999999653
No 454
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=21.66 E-value=3.4e+02 Score=20.07 Aligned_cols=38 Identities=13% Similarity=-0.022 Sum_probs=22.5
Q ss_pred HHHHHHc----CceEEeeeeCCCCeeEEEEeCCCCCeEEEee
Q 036856 27 CFLLVEK----GIQTFQRSLPDGKVKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 27 ~~~L~~~----GI~~~~~~~p~~~~~QiF~~DPDGn~IEL~f 64 (68)
.++|++. ...+.......++++-+=|.-+||+.||=..
T Consensus 57 r~~l~~~~~~~~~~~~~~~~s~dgt~K~l~~~~dg~~iE~V~ 98 (355)
T TIGR00048 57 REKLNRVFEIRTPEIAHEQRSVDGTIKYLFKLGDGQTIETVL 98 (355)
T ss_pred HHHHhhcEEeCCcceeEEEEcCCCeEEEEEEcCCCCEEEEEE
Confidence 4556655 2223333444455555556778999999764
No 455
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=21.65 E-value=92 Score=17.92 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.6
Q ss_pred CCeeEEEEeCCCCCeE
Q 036856 45 GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 45 ~~~~QiF~~DPDGn~I 60 (68)
..+-..|+-||+|..+
T Consensus 94 ~~~P~~~vid~~G~v~ 109 (114)
T cd02967 94 SKLPYAVLLDEAGVIA 109 (114)
T ss_pred CCcCeEEEECCCCeEE
Confidence 4467889999999654
No 456
>PRK01546 hypothetical protein; Provisional
Probab=21.56 E-value=51 Score=20.00 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.1
Q ss_pred eeEEEEeCCCCCeE
Q 036856 47 VKQVFFFDPDGNGL 60 (68)
Q Consensus 47 ~~QiF~~DPDGn~I 60 (68)
+..+-+.||+||-|
T Consensus 49 L~~i~vvD~~G~dV 62 (79)
T PRK01546 49 LKGIKVVNEQGTDV 62 (79)
T ss_pred hccceEECCCCCCC
Confidence 34567789999854
No 457
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.43 E-value=1.2e+02 Score=16.23 Aligned_cols=20 Identities=15% Similarity=-0.291 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCceEEeeeeC
Q 036856 24 SFGCFLLVEKGIQTFQRSLP 43 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p 43 (68)
..+...|+.+|++|+...+.
T Consensus 20 ~~v~~~L~~~~i~~~~~~~~ 39 (72)
T cd03054 20 LKVETYLRMAGIPYEVVFSS 39 (72)
T ss_pred HHHHHHHHhCCCceEEEecC
Confidence 34677889999999876554
No 458
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=21.41 E-value=2.3e+02 Score=18.20 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHcCceEEeeeeCCC------------CeeEEEEeCCC--CCe
Q 036856 22 FLSFGCFLLVEKGIQTFQRSLPDG------------KVKQVFFFDPD--GNG 59 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~~p~~------------~~~QiF~~DPD--Gn~ 59 (68)
+=.+.++.|+++|+.+.+..-+.. ++.--|+-|+- ||+
T Consensus 37 Fg~aL~~~LR~~GYaV~e~~~~~~~~~~~~~~~~~~g~~L~Yvvd~~~~~~l 88 (121)
T PF07283_consen 37 FGQALENALRAKGYAVIEDDPPDNSANASAAAEAPKGVPLRYVVDQFDGQNL 88 (121)
T ss_pred HHHHHHHHHHhcCcEEEecCCcccccccccccccCCCeeEEEEEEcCCCceE
Confidence 335568999999999977543321 34566777874 555
No 459
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.32 E-value=1.2e+02 Score=22.43 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCC---CCe----------eEEEEeCCCC
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPD---GKV----------KQVFFFDPDG 57 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~---~~~----------~QiF~~DPDG 57 (68)
..-+++++++.|+++|+.+-....|. ... +-+++.+++|
T Consensus 81 ~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g 132 (441)
T PF01055_consen 81 RFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDG 132 (441)
T ss_dssp TTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTS
T ss_pred cccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccC
Confidence 35578999999999999997765554 222 4578888888
No 460
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.27 E-value=75 Score=19.85 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=20.6
Q ss_pred EEEecChhhccccHHHHHHHHHHcCceEEe
Q 036856 10 FSFGMSEAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 10 ~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+..++++.+ |.++..+-.++|++|+.
T Consensus 54 iniRlss~d----LeaIK~kaSa~GlpYQt 79 (92)
T COG5304 54 INIRLSSSD----LEAIKQKASAEGLPYQT 79 (92)
T ss_pred eeEecCHHH----HHHHHHHHhhcCCcHHH
Confidence 456777555 89999999999999964
No 461
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=21.26 E-value=1e+02 Score=17.56 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.2
Q ss_pred eEEEEeCCCCCeEEEee
Q 036856 48 KQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 48 ~QiF~~DPDGn~IEL~f 64 (68)
..+.+.||+|..|.+..
T Consensus 34 ~~v~l~~~~g~~W~v~~ 50 (100)
T PF02362_consen 34 REVTLKDPDGRSWPVKL 50 (100)
T ss_dssp CEEEEEETTTEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEE
Confidence 56888999999988876
No 462
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=21.26 E-value=83 Score=21.89 Aligned_cols=37 Identities=22% Similarity=0.020 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCceEEeeeeCC-CCeeEEEEeCCCCCeE
Q 036856 24 SFGCFLLVEKGIQTFQRSLPD-GKVKQVFFFDPDGNGL 60 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~~p~-~~~~QiF~~DPDGn~I 60 (68)
++++.+|.++|+++....... +..+-+-+.+||...|
T Consensus 106 de~i~~L~~~~~~~~~~~~~~~t~~~~~r~~~~~D~~i 143 (181)
T PF11922_consen 106 DETIQELEEAGIPIEVNGKNYRTDKKPVRMEYPDDIDI 143 (181)
T ss_pred HHHHHHHHhcCCceeecccccccccCCccccCCCccCc
Confidence 468999999999997654432 2233345566665544
No 463
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=21.25 E-value=88 Score=17.66 Aligned_cols=18 Identities=6% Similarity=-0.247 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHcCceEEe
Q 036856 22 FLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~ 39 (68)
....++++|.+.|++|.+
T Consensus 17 ~k~eMiaem~~~G~~y~~ 34 (54)
T PF09124_consen 17 TKPEMIAEMDSYGFEYNE 34 (54)
T ss_dssp -HHHHHHHHHHTT----T
T ss_pred CHHHHHHHHHHhCCcCCc
Confidence 367789999999999965
No 464
>COG5402 Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=1.1e+02 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=22.2
Q ss_pred HHHHHcCceEEe-eeeCCCCeeEEEEeCCCCCeEE
Q 036856 28 FLLVEKGIQTFQ-RSLPDGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 28 ~~L~~~GI~~~~-~~~p~~~~~QiF~~DPDGn~IE 61 (68)
++|+ .+..|+. .-.|.-..+.+|..|+||+.|+
T Consensus 85 ~~Lr-~~C~Yri~G~~ppARfWTly~a~~d~~~l~ 118 (194)
T COG5402 85 QRLR-RECSYRIEGGTPPARFWTLYAADQDLHVLA 118 (194)
T ss_pred chhh-ccCcEEecCCCCCceeEEEEEecCCCceec
Confidence 4443 3444532 3446677899999999998875
No 465
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=20.99 E-value=2.4e+02 Score=20.26 Aligned_cols=41 Identities=12% Similarity=-0.104 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCCC------------eeEEEEeCCCCCe
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDGK------------VKQVFFFDPDGNG 59 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~~------------~~QiF~~DPDGn~ 59 (68)
..-+.+++++.|+++|+.+.....|... .+-.|+.+++|..
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~ 114 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGEL 114 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCe
Confidence 4667889999999999999765555421 2457888888864
No 466
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=20.95 E-value=2.2e+02 Score=17.59 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=28.0
Q ss_pred eeeEEEecChhhccccHHHHHHHHHHcCceEEeeeeCC---------CCeeEEEEeCCCCCeEEE
Q 036856 7 LQFFSFGMSEAESLQFLSFGCFLLVEKGIQTFQRSLPD---------GKVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~L~~~GI~~~~~~~p~---------~~~~QiF~~DPDGn~IEL 62 (68)
++.+++.++.. -+...+.+++.++++.....+. .+...+|+.||+|..+..
T Consensus 95 ~~vi~i~~d~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 95 VEIIAVNVDET-----ELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred eEEEEEEcCCC-----HHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 55666665521 1344555555666553211111 234558999999988754
No 467
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.95 E-value=56 Score=25.10 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=33.4
Q ss_pred eeEEEecChhhcccc---HHHHHHHHHHcCceEEeeeeCCC--CeeEEEE---eCCCCCeEE
Q 036856 8 QFFSFGMSEAESLQF---LSFGCFLLVEKGIQTFQRSLPDG--KVKQVFF---FDPDGNGLE 61 (68)
Q Consensus 8 ~~~~~~~~~~~~l~~---l~~~~~~L~~~GI~~~~~~~p~~--~~~QiF~---~DPDGn~IE 61 (68)
+.+.|.++|..-+.+ +...+++|++.|+.+.--+.-.+ +...+-- ..||..+|-
T Consensus 523 ~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~~d~iKid 584 (660)
T PRK11829 523 QQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLD 584 (660)
T ss_pred hhEEEEEcCchhhcCHHHHHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCCCcEEEEC
Confidence 457889998665554 44568999999999976444332 2222222 336666653
No 468
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=20.91 E-value=76 Score=15.32 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=12.6
Q ss_pred ecChhhccccHHHHHHHHHHcCce
Q 036856 13 GMSEAESLQFLSFGCFLLVEKGIQ 36 (68)
Q Consensus 13 ~~~~~~~l~~l~~~~~~L~~~GI~ 36 (68)
.+| |.-...+.+.|+++|..
T Consensus 3 rIP----L~K~kS~R~~L~e~g~~ 22 (29)
T PF07966_consen 3 RIP----LKKFKSMRETLREKGTL 22 (29)
T ss_dssp EEE----EEE---HHHHHHHTT-H
T ss_pred EEe----ccCCchHHHHHHHcCch
Confidence 566 77788888999998864
No 469
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.87 E-value=1.4e+02 Score=20.44 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCceEEe
Q 036856 24 SFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~ 39 (68)
...+++|++.|+++..
T Consensus 12 ~~~~~~L~~~g~~vt~ 27 (176)
T PF02677_consen 12 TYPLERLREEGFDVTG 27 (176)
T ss_pred HHHHHHHHHCCCCeEE
Confidence 3568999999998864
No 470
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=20.86 E-value=2.1e+02 Score=19.48 Aligned_cols=20 Identities=20% Similarity=-0.119 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHcCceEEeee
Q 036856 22 FLSFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 22 ~l~~~~~~L~~~GI~~~~~~ 41 (68)
...++.+.|+++||+|+...
T Consensus 39 da~~i~~~L~~~gI~y~~~~ 58 (206)
T PF01514_consen 39 DANEIVAALDENGIPYKLSD 58 (206)
T ss_dssp HHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHCCCCcEecC
Confidence 36778999999999997644
No 471
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.81 E-value=88 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=17.7
Q ss_pred ccccHHHHHHHHHHcCceEEeee
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRS 41 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~ 41 (68)
+.+.+....++|++.|+++....
T Consensus 7 g~~~~~~~~~~l~~~g~~v~v~~ 29 (198)
T cd01748 7 GMGNLRSVANALERLGAEVIITS 29 (198)
T ss_pred CCChHHHHHHHHHHCCCeEEEEc
Confidence 35567788899999999886644
No 472
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=20.77 E-value=68 Score=23.98 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.6
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
....|+.|+||+.|....
T Consensus 21 ~~DtfifDcDGVlW~g~~ 38 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEK 38 (306)
T ss_pred hcCEEEEcCCcceeecCC
Confidence 356899999999998553
No 473
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=20.73 E-value=1.9e+02 Score=17.92 Aligned_cols=32 Identities=22% Similarity=-0.070 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeC
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFD 54 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~D 54 (68)
+..++++|.++|.-.+...-.+...+.+++.+
T Consensus 71 vsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~ 102 (144)
T PRK11512 71 LTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT 102 (144)
T ss_pred HHHHHHHHHHCCCEEeccCcccCCeeEeEECh
Confidence 55578999999998877654445556666554
No 474
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.68 E-value=1.1e+02 Score=19.86 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=15.5
Q ss_pred eeEEEEeCCCCCeEEEeee
Q 036856 47 VKQVFFFDPDGNGLEVASR 65 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f~ 65 (68)
..++|..||.|+.++..+.
T Consensus 108 gp~ly~~d~~G~~~~~~~~ 126 (188)
T cd03762 108 GGQVYSIPLGGMLIRQPFA 126 (188)
T ss_pred CcEEEEECCCCCEEecCEE
Confidence 3689999999999887543
No 475
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.64 E-value=1.7e+02 Score=17.09 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=25.5
Q ss_pred ceeeEEEecC-----hhhccccHHHHHHHHHHcCceEEe
Q 036856 6 SLQFFSFGMS-----EAESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 6 ~~~~~~~~~~-----~~~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
.++++=+.++ ...+++-|..+.+.++++|+.+.-
T Consensus 47 ~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l 85 (117)
T PF01740_consen 47 TIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVL 85 (117)
T ss_dssp SSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3566666666 345677888899999999999854
No 476
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.59 E-value=2e+02 Score=16.95 Aligned_cols=40 Identities=20% Similarity=0.039 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCceEEeee----------eCCCCeeEEEEeCCCCCeEEEe
Q 036856 24 SFGCFLLVEKGIQTFQRS----------LPDGKVKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 24 ~~~~~~L~~~GI~~~~~~----------~p~~~~~QiF~~DPDGn~IEL~ 63 (68)
+...+.+++.++++.... ....++...|+-|++|+.+.-.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 68 ENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred HHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 444556666777652210 0113456689999999977653
No 477
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=20.58 E-value=1.5e+02 Score=19.70 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.7
Q ss_pred eeEEEEeCCCCCeEEEe
Q 036856 47 VKQVFFFDPDGNGLEVA 63 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~ 63 (68)
.+.+|+-||+|......
T Consensus 117 ~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 117 VRAVFIIDPDKKIRLIL 133 (203)
T ss_pred eeEEEEECCCCeEEEEE
Confidence 46799999999877654
No 478
>PRK04043 tolB translocation protein TolB; Provisional
Probab=20.58 E-value=1.7e+02 Score=21.95 Aligned_cols=37 Identities=14% Similarity=-0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHcCceEEee--eeC---CCCeeEEEEeCCCCCeEE
Q 036856 25 FGCFLLVEKGIQTFQR--SLP---DGKVKQVFFFDPDGNGLE 61 (68)
Q Consensus 25 ~~~~~L~~~GI~~~~~--~~p---~~~~~QiF~~DPDGn~IE 61 (68)
...++|...|..+..+ .+. ....++|++.|+||..-.
T Consensus 141 ~i~~~l~~~~~~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~ 182 (419)
T PRK04043 141 DINDYLKAPSIDWMKRKVVFSKYTGPKKSNIVLADYTLTYQK 182 (419)
T ss_pred HHHHHhCCCCcCceeeEEEEEEccCCCcceEEEECCCCCcee
Confidence 3468887777666442 111 223789999999998544
No 479
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=1.5e+02 Score=21.54 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHc----------CceEEeeeeCCCCeeEEEEeCCCCCe
Q 036856 20 LQFLSFGCFLLVEK----------GIQTFQRSLPDGKVKQVFFFDPDGNG 59 (68)
Q Consensus 20 l~~l~~~~~~L~~~----------GI~~~~~~~p~~~~~QiF~~DPDGn~ 59 (68)
++-|...++.||++ ||..-..-....+...+|-.||+|+-
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f 154 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIF 154 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcch
Confidence 34455556666654 23332223333447889999999974
No 480
>PF05367 Phage_endo_I: Phage endonuclease I; InterPro: IPR008029 Endonuclease I (3.1.21.2 from EC) is a junction-resolving enzyme encoded by bacteriophage T7, that selectively binds and cleaves four-way Holliday DNA junctions []. The structure of the enzyme shows that it forms a symmetric homodimer arranged in two well-separated domains. Each domain, however, is composed of elements from both subunits, and amino acid side chains from both protomers contribute to the active site []. ; GO: 0008833 deoxyribonuclease IV (phage-T4-induced) activity, 0015074 DNA integration, 0016032 viral reproduction; PDB: 3CAE_A 1M0D_A 1M0I_C 1FZR_B 2PFJ_B.
Probab=20.52 E-value=1.7e+02 Score=19.85 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHHHHHcCceEE--eeeeCCC-Ce-eEEE---EeCCCCCeEEEe
Q 036856 25 FGCFLLVEKGIQTF--QRSLPDG-KV-KQVF---FFDPDGNGLEVA 63 (68)
Q Consensus 25 ~~~~~L~~~GI~~~--~~~~p~~-~~-~QiF---~~DPDGn~IEL~ 63 (68)
.+-+.|...||+|. .-.+|.. +. ...| |.-|||..||.-
T Consensus 22 kva~~L~~~gv~~~yE~~ki~Yvipa~~h~YtPDF~LpngiiiEtK 67 (149)
T PF05367_consen 22 KVAKQLEKLGVKYEYESWKIPYVIPASEHKYTPDFVLPNGIIIETK 67 (149)
T ss_dssp HHHHHHHHTT---EES-EEEEEEEEEEEEEE--SEE-TTSEEEEEE
T ss_pred HHHHHHHHcCCCceeeeeeeeeEeeccccccCCCEEccCceEEEee
Confidence 35688999997773 2233321 11 1122 223899999863
No 481
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=20.51 E-value=1.8e+02 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.7
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
.+..|+-|++|..+...-
T Consensus 131 ~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 131 ARAVFVLDENNKVVYSEL 148 (167)
T ss_pred eeEEEEECCCCeEEEEEE
Confidence 358899999999987763
No 482
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=20.48 E-value=99 Score=18.87 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHcCceEEee
Q 036856 21 QFLSFGCFLLVEKGIQTFQR 40 (68)
Q Consensus 21 ~~l~~~~~~L~~~GI~~~~~ 40 (68)
+.++++++.|++.|++|+..
T Consensus 19 ~yVa~~i~~l~~sGl~y~~~ 38 (97)
T TIGR00106 19 SYVAAAIEVLKESGLKYELH 38 (97)
T ss_pred HHHHHHHHHHHHcCCCeEec
Confidence 46788999999999999764
No 483
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.40 E-value=1.2e+02 Score=21.78 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.1
Q ss_pred eeEEEecChh----------------hccccHHHHHHHHHHcCceEEe
Q 036856 8 QFFSFGMSEA----------------ESLQFLSFGCFLLVEKGIQTFQ 39 (68)
Q Consensus 8 ~~~~~~~~~~----------------~~l~~l~~~~~~L~~~GI~~~~ 39 (68)
+|+||=|+-+ .|..-+..++++..+.||++-.
T Consensus 16 ~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lT 63 (253)
T PRK14836 16 RHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLT 63 (253)
T ss_pred CeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 6999999965 5667777889999999999743
No 484
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=20.35 E-value=2.1e+02 Score=18.43 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=12.2
Q ss_pred HHHHHHHHHc-CceEEee
Q 036856 24 SFGCFLLVEK-GIQTFQR 40 (68)
Q Consensus 24 ~~~~~~L~~~-GI~~~~~ 40 (68)
..+-+.|+++ |++++..
T Consensus 39 ~gTa~~L~~~~Gi~v~~v 56 (142)
T PRK05234 39 GTTGGLIQEATGLDVTRL 56 (142)
T ss_pred ChHHHHHHhccCCeeEEE
Confidence 3566778888 9988654
No 485
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=20.30 E-value=1.7e+02 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHHHHc--CceE-Eee-e----eCCCCeeEEEEeCC-CCCe
Q 036856 26 GCFLLVEK--GIQT-FQR-S----LPDGKVKQVFFFDP-DGNG 59 (68)
Q Consensus 26 ~~~~L~~~--GI~~-~~~-~----~p~~~~~QiF~~DP-DGn~ 59 (68)
.++.|++. +||+ .+- . .|......+|+.|| ||-+
T Consensus 54 I~~~L~a~~P~ipvv~EE~~~~~~~~~~~~~rfWLiDPLDGTk 96 (276)
T COG1218 54 ILEGLRALFPDIPVVSEEEEAIDWEERLHWDRFWLVDPLDGTK 96 (276)
T ss_pred HHHHHHHhCCCCCEEEeccccCCCCCcccCceEEEECCCcCcH
Confidence 46788877 4877 221 2 34466788999999 8853
No 486
>PF07984 DUF1693: Domain of unknown function (DUF1693) ; InterPro: IPR012937 This domain occurs in many hypothetical proteins. It also occurs in some prion-like proteins.
Probab=20.17 E-value=2.3e+02 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCceEEeeeeCCCCeeEEEEeCC--CCCeEEEeee
Q 036856 23 LSFGCFLLVEKGIQTFQRSLPDGKVKQVFFFDP--DGNGLEVASR 65 (68)
Q Consensus 23 l~~~~~~L~~~GI~~~~~~~p~~~~~QiF~~DP--DGn~IEL~f~ 65 (68)
+..+..+|.++||+++....-++....+--.|. .=|-|.|+|.
T Consensus 36 I~~Vr~~L~~~GI~VkdVRLNGsaAShVL~~~~~~~Y~DLDlIF~ 80 (320)
T PF07984_consen 36 IQVVRDRLEERGIPVKDVRLNGSAASHVLSSDNGQSYNDLDLIFS 80 (320)
T ss_pred HHHHHHHHHHcCCCccceEEecceeeeeeccCCCCCccccceEEE
Confidence 445679999999999886666655455544443 3345555553
No 487
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=20.10 E-value=1.4e+02 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=14.8
Q ss_pred eeEEEEeCCCCCeEEEee
Q 036856 47 VKQVFFFDPDGNGLEVAS 64 (68)
Q Consensus 47 ~~QiF~~DPDGn~IEL~f 64 (68)
.+..|+-||||..+...-
T Consensus 110 ~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 110 ARAVFVIDENGKVIYVEL 127 (143)
T ss_pred ceEEEEEcCCCeEEEEEE
Confidence 468899999999887664
No 488
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.03 E-value=1.7e+02 Score=16.02 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHcCceEEeee---eCCCC-eeEEEEeCCCCCeE
Q 036856 20 LQFLSFGCFLLVEKGIQTFQRS---LPDGK-VKQVFFFDPDGNGL 60 (68)
Q Consensus 20 l~~l~~~~~~L~~~GI~~~~~~---~p~~~-~~QiF~~DPDGn~I 60 (68)
-.=|..+..-|...|+.+..-. .+++. .-.+++.||+|..+
T Consensus 12 ~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 12 PGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred CCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 3347788899999999996633 23333 44566689999865
No 489
>PRK10426 alpha-glucosidase; Provisional
Probab=20.02 E-value=3.7e+02 Score=21.58 Aligned_cols=44 Identities=27% Similarity=0.129 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHHHcCceEEeeeeCCC----------CeeEEEEeCCCCCeEEE
Q 036856 19 SLQFLSFGCFLLVEKGIQTFQRSLPDG----------KVKQVFFFDPDGNGLEV 62 (68)
Q Consensus 19 ~l~~l~~~~~~L~~~GI~~~~~~~p~~----------~~~QiF~~DPDGn~IEL 62 (68)
..-..++++++|+++|+.+-....|.. ..+-.|+.|++|..-..
T Consensus 267 ~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~ 320 (635)
T PRK10426 267 RYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLV 320 (635)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEe
Confidence 456789999999999999977666641 14568999999986443
Done!