BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036857
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|B Chain B, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|C Chain C, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
Length = 440
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 5 MINNNRPSYWNSNKFEHP--ATSNTIATD--------FDMNKALVDDYWGPYTGKSSLIA 54
+ N++RP +W+S + E P A + A FD A D Y+ K +I
Sbjct: 269 LTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIP 328
Query: 55 AMADLDLKEFQSNSRSILVI 74
A+L L F S VI
Sbjct: 329 GAANLRLGRFAGPRVSRQVI 348
>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|B Chain B, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|C Chain C, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
Length = 417
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 5 MINNNRPSYWNSNKFEHP--ATSNTIATD--------FDMNKALVDDYWGPYTGKSSLIA 54
+ N++RP +W+S + E P A + A FD A D Y+ K +I
Sbjct: 258 LTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIP 317
Query: 55 AMADLDLKEFQSNSRSILVI 74
A+L L F S VI
Sbjct: 318 GAANLRLGRFAGPRVSRQVI 337
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 83 SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142
SN L+ LL +DG+ ++ D I++ +T+ D +D +RP +D H + T
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
Query: 143 --RHYLFEK 149
R +FE+
Sbjct: 180 QERREIFEQ 188
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 41 DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDG 100
D+W P+ G S LIA + D KE+ + D + YN ++ +L F +G
Sbjct: 24 DFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI-ATQYNIRSIPTVLFFKNG 82
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G ++ + ADL
Sbjct: 280 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAAAVLFSADL 321
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 297 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 338
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 282 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 323
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 274 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 315
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 280 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 321
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 280 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 321
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 280 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 321
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 279 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 320
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 41 DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDG 100
D+W P+ G LIA + D KE+ + D + YN ++ +L F +G
Sbjct: 23 DFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI-ATQYNIRSIPTVLFFKNG 81
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 273 HPTTSQAKGPCPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 314
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 41 DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDG 100
D+W P+ G LIA + D KE+ + D + YN ++ +L F +G
Sbjct: 24 DFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI-ATQYNIRSIPTVLFFKNG 82
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 280 HPTTSQAKGPCPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 321
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 35 NKALVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSAL 94
+K ++ D+W P+ G +IA + + KE++ + + V D + + Y ++ L
Sbjct: 19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQ-YGIRSIPTL 77
Query: 95 LKFVDG 100
L F +G
Sbjct: 78 LLFKNG 83
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 21 HPATSNTIATDFDMNKALVDDY---WGPYTGKSSLIAAMADL 59
HP TS NK L + + WGPY G + + ADL
Sbjct: 280 HPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAFAVLFSADL 321
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMT-TDYKDHIDPVPLRPSCMD 132
L+ LL +DG S G I+VM T+ D +DP LRP D
Sbjct: 139 LNQLLVEMDGFDSKEG---IIVMAATNRPDILDPALLRPGRFD 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMT-TDYKDHIDPVPLRPSCMD 132
L+ LL +DG S G I+VM T+ D +DP LRP D
Sbjct: 139 LNQLLVEMDGFDSKEG---IIVMAATNRPDILDPALLRPGRFD 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,106,307
Number of Sequences: 62578
Number of extensions: 195256
Number of successful extensions: 482
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 31
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)