BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036857
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 49/176 (27%)
Query: 42 YWGPYTGKSSLIAAMA---------------DLDLKEFQ-----SNSRSILVIEDAVTSF 81
Y P GKSSLI A+A D+D K+ + +SIL+IED +F
Sbjct: 227 YGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAF 286
Query: 82 ESNAYN------------SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPS 129
+S+ N S+ S LL +DG+ +S +GRIL MTT+ + +D +R
Sbjct: 287 KSHRDNVDSNNNNSNNNNSLTYSGLLNALDGV--ASQEGRILFMTTNKIELLDSALIREG 344
Query: 130 CMDMHFHLSSHT-------FRHY--------LFEKIEERLAKIQATPAEVPGELMK 170
+D+ +S+ T F H+ L + E L Q + +++ G L+K
Sbjct: 345 RIDLKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLK 400
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 29/127 (22%)
Query: 42 YWGPYTGKSSLIAAMA-DLD-----------------LKEFQSN--SRSILVIEDAVTSF 81
Y P +GK+S + A+A +LD L SN ++++++ED ++F
Sbjct: 248 YGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAF 307
Query: 82 ESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
+ + +V S LL +DG+ SS D RI+ MTT++ + +DP +RP +D+
Sbjct: 308 QGRERSGEVGFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVK 365
Query: 135 FHLSSHT 141
+L + T
Sbjct: 366 AYLGNAT 372
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)
Query: 68 SRSILVIEDAVTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116
+S++++ED +F S + S LL +DG+ +S + RI+ MTT+
Sbjct: 275 QQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTN 332
Query: 117 YKDHIDPVPLRPSCMDM--------HFHLSSHTFRHY------LFEKIEERLAKI--QAT 160
Y D +DP +RP +D+ H+ L+ R Y L E E + K + +
Sbjct: 333 YIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLKATSEIS 392
Query: 161 PAEVPGELM 169
PA+V G M
Sbjct: 393 PAQVQGYFM 401
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 57/179 (31%)
Query: 42 YWGPYTGKSSLIAAMADLDLKEFQ------------------------SNSRSILVIEDA 77
Y P GKSS I A+A E Q + +S++++ED
Sbjct: 229 YGPPGCGKSSFITALAG----ELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDV 284
Query: 78 VTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126
+F S + S LL +DG+ +S + RI+ MTT++ D +DP +
Sbjct: 285 DAAFLSRDLAAENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALI 342
Query: 127 RPSCMDM--------HFHLSSHTFRHY------LFEKIEERL--AKIQATPAEVPGELM 169
RP +DM + L+ R Y L E +R+ A Q +PA+V G M
Sbjct: 343 RPGRVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFADRVLQATTQISPAQVQGYFM 401
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)
Query: 68 SRSILVIEDAVTSFES-----------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116
+S++++ED +F S + S LL +DG+ +S + RI+ MTT+
Sbjct: 275 QQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTN 332
Query: 117 YKDHIDPVPLRPSCMDM--------HFHLSSHTFRHY------LFEKIEERLAKI--QAT 160
+ D +DP +RP +D+ H+ L+ R Y L E E + + Q +
Sbjct: 333 HVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLRATNQIS 392
Query: 161 PAEVPGELM 169
PA+V G M
Sbjct: 393 PAQVQGYFM 401
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 42/151 (27%)
Query: 42 YWGPYTGKSSLIAAMA-------------DLDLKEFQSN-------SRSILVIEDAVTSF 81
Y P GKSS I A+A D L + + N +SI+++ED +F
Sbjct: 229 YGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAF 288
Query: 82 ESN---------AYNSVA---LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPS 129
S AY + S LL +DG+ SS + RI+ MTT++ + +DP +RP
Sbjct: 289 VSRELLPTENPLAYQGMGRLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPG 346
Query: 130 CMDM--------HFHLSSHTFRHYLFEKIEE 152
+D+ H+ L+ R Y E E
Sbjct: 347 RVDLKQYVGHCSHWQLTQMFRRFYPQESAAE 377
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 31/136 (22%)
Query: 42 YWGPYTGKSSLIAAMA-DLD-----------------LKEFQSN--SRSILVIEDAVTSF 81
Y P +GK+S I A+A +LD L +N RSIL++ED +F
Sbjct: 266 YGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAF 325
Query: 82 -------ESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
E ++SV S LL +DG+ SS + I MTT++ + +D +RP +D
Sbjct: 326 NKRSQTGEQGFHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYK 383
Query: 135 FHLSSHTFRHYLFEKI 150
+ + T Y EK+
Sbjct: 384 VFVGNAT--PYQVEKM 397
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139
+ LS +L +DG+++S +GRI++MTT++ + +DP +R +DM S+
Sbjct: 92 LTLSGILNSLDGIFNS--EGRIVIMTTNHSEVLDPALIRRGRIDMQIEFSN 140
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 83 SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH-------- 134
S+ +++ S LL +DG+ +S +GRIL MTT++ + +D V +RP +D+
Sbjct: 342 SSGGSALTFSGLLNALDGVAAS--EGRILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSS 399
Query: 135 FHLSSHTFRHY-----LFEKIEERLAKIQATPAEVPGELM 169
+ + + Y L ++ E+L + +PA++ M
Sbjct: 400 YQMEQMFLKFYPTDFDLAKQFVEKLENYKFSPAQLQAYFM 439
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 68 SRSILVIEDAVTSFESNAYNS-----------VALSALLKFVDGLWSSSGDGRILVMTTD 116
+SI+++ED +F S N + S LL +DG+ +S + RI+ MTT+
Sbjct: 275 QQSIILLEDVDAAFVSRDLNKQNPTAYQGMGRLTFSGLLNALDGV--ASTEARIVFMTTN 332
Query: 117 YKDHIDPVPLRPSCMDMHFHLSSHT 141
+ D +DP +RP +D+ ++ T
Sbjct: 333 HIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|A1A0U4|ARC_BIFAA AAA ATPase forming ring-shaped complexes OS=Bifidobacterium
adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814
/ E194a) GN=arc PE=3 SV=1
Length = 515
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 23 ATSNTIATDFDMNKALVDDYWGP-----YTGKSSLIAAMADLDLKEFQSNSRSILVIEDA 77
A +N +A D + GP + G+S + M +E ++ + ++V D
Sbjct: 249 AVANALAEGTDAGSGVFLSVKGPELLNKFVGESERLIRMIFKRARERAADGKPVIVFIDE 308
Query: 78 VTSF-------ESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSC 130
+ S S+ + + L +DG+ S D +++ ++ D IDP LRP
Sbjct: 309 MDSLLRTRGTGVSSDVETTIVPQFLTELDGV--ESLDNVMVIGASNRIDMIDPAVLRPGR 366
Query: 131 MDMHFHL-------SSHTFRHYLFEKI 150
+D+ + ++ RHYL +K+
Sbjct: 367 LDVKIRVDRPGIQQATQIVRHYLTDKL 393
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 24 TSNTIATDFDMNKALVD--DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIE--DAVT 79
T+ +AT+ +N V + + Y G+S A+ ++ ++ +S + SI+ + DA++
Sbjct: 566 TAKALATESGINFLAVKGPEIFNKYVGESE--RAIREI-FRKARSAAPSIIFFDEIDALS 622
Query: 80 SFESNAYNSVA---LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFH 136
+ S A L++LL +DG+ G ++V T+ D ID LRP +D H +
Sbjct: 623 PDRDGSSTSAANHVLTSLLNEIDGVEELKG--VVIVAATNRPDEIDAALLRPGRLDRHIY 680
Query: 137 LS 138
+
Sbjct: 681 VG 682
>sp|Q67LC0|FTSH1_SYMTH ATP-dependent zinc metalloprotease FtsH 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH1 PE=3 SV=1
Length = 594
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHF 135
++ LL +DG SG+G I+V T+ D +DP LRP D H
Sbjct: 269 INQLLVEMDGF--DSGEGVIVVAATNRPDVLDPAVLRPGRFDRHL 311
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 47/171 (27%)
Query: 30 TDFDMNKALVDD-------YWGPYTGKSSLIAAMAD--------LDLKEF---------- 64
T FD+ K + D Y P TGK+ L+ A+A+ ++ EF
Sbjct: 187 TQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPR 246
Query: 65 ---------QSNSRSILVIE--DAVTSFESNAYNSV------ALSALLKFVDGLWSSSGD 107
+ NS +I+ I+ DA+ + +A L LL +DG SS
Sbjct: 247 MVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNV 306
Query: 108 GRILVMTTDYKDHIDPVPLRPSCMDMHFH---LSSHTFRHYLFEKIEERLA 155
++M T+ D +DP LRP +D L R +F I +++
Sbjct: 307 K--VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMS 355
>sp|P54399|PDI_DROME Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2
SV=1
Length = 496
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 4 HMINNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDYWGPYTGKSSLIAAMADLDLKE 63
H+++ P W+ N + +SN + D +K+++ +++ P+ G +A + D ++
Sbjct: 354 HLLSQELPEDWDKNPVKVLVSSNFESVALDKSKSVLVEFYAPWCGHCKQLAPIYDQLAEK 413
Query: 64 FQSNSRSILVIEDAVTSFESNAYNSVALSAL 94
++ N ++ D+ +N S+ +S+
Sbjct: 414 YKDNEDIVIAKMDST----ANELESIKISSF 440
>sp|B3DY14|FTSH2_METI4 ATP-dependent zinc metalloprotease FtsH 2 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH2 PE=3 SV=1
Length = 641
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132
L+ALL +DG+ S +G I++ T+ KD +DP LRP D
Sbjct: 276 LNALLVEMDGI--ESQEGVIVIAATNRKDVLDPALLRPGRFD 315
>sp|Q9LET7|CI111_ARATH Calmodulin-interacting protein 111 OS=Arabidopsis thaliana
GN=CIP111 PE=1 SV=1
Length = 1022
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS--SHTFR----H 144
++ LL +DG+ S DG +++ T+ D I+P RP +D + S T R H
Sbjct: 505 VATLLNLMDGI--SRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILH 562
Query: 145 YLFEKIEERLAKIQ 158
+ + L+ IQ
Sbjct: 563 IILRGMRHSLSNIQ 576
>sp|O60058|AFG2_SCHPO ATPase family gene 2 protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=afg2 PE=3 SV=1
Length = 809
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 24 TSNTIATDFDMNKALVD--DYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIE-DAVTS 80
T+ IAT+ +N V + + + G+S A+ + K Q++ I E DA+T+
Sbjct: 598 TAKAIATETGLNFIAVKGPELFDKFVGESE--RAVRQVFQKARQASPSVIFFDEIDALTA 655
Query: 81 --FESNAYNSVALSALLKFVDGLWSSSGDGRILVMT-TDYKDHIDPVPLRPSCMDMHFHL 137
E N+ + V ++ALL +DG+ + +LV+ T+ D IDP +RP +D ++
Sbjct: 656 NRGEDNSSDRV-VAALLNELDGIEALRN---VLVLAATNRPDMIDPALMRPGRLDRLLYV 711
Query: 138 SSHTFRHYLFEKIEERLAKIQA 159
F + +++ KIQA
Sbjct: 712 GPPNF------EARKQIVKIQA 727
>sp|A9WSI4|ARC_RENSM Proteasome-associated ATPase OS=Renibacterium salmoninarum (strain
ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB
2235) GN=arc PE=3 SV=1
Length = 594
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 38 LVDDYWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSF-------ESNAYNSVA 90
L+D Y G K LI A A +E S+ +++V D + S S+ +
Sbjct: 321 LLDKYVGETERKIRLIFARA----REKASDGSAVVVFFDEMDSLFRTRGTGVSSDVETTI 376
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM 133
+ LL +DG+ D I++ ++ +D IDP LRP +D+
Sbjct: 377 VPQLLSEIDGV--ERLDNVIVIGASNREDMIDPAILRPGRLDV 417
>sp|Q6CPV1|PEX6_KLULA Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PEX6 PE=3 SV=1
Length = 1000
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
+S LL +DG+ SS GDG ++ T+ D +D LRP D +L
Sbjct: 824 VSQLLAELDGM-SSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYL 869
>sp|D0LWB8|FTSH_HALO1 ATP-dependent zinc metalloprotease FtsH OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=ftsH PE=3 SV=1
Length = 682
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132
L+ LL +DG S DG IL+ T+ D +DP LRP D
Sbjct: 315 LNQLLVEMDGF--ESNDGVILIAATNRPDVLDPALLRPGRFD 354
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
L+ALL +DG S+SG I+V T+ + +DP LRP D H
Sbjct: 374 LNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRH 415
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
L+ALL +DG S+SG I++ T+ + +DP LRP D H
Sbjct: 345 LNALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRH 386
>sp|Q60290|Y3533_METJA Uncharacterized protein MJECL33 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL33 PE=4 SV=1
Length = 408
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 28 IATDFDMNKALVDD--YWGPYTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSFESNA 85
I ++ D +K +++D YWG +T K + I ++ K ++ + I +IED++ + S+
Sbjct: 241 IVSEDDKDKFVLEDIYYWGKFTVKGTSIEKHNEIVDKTIENYEQKIEIIEDSLIDYTSSD 300
Query: 86 YN---------SVALSALLKFVDGLWS 103
+ + L FV+GL S
Sbjct: 301 WGDRIPLIYEFEKEIEDLKNFVEGLIS 327
>sp|Q74Z13|PEX6_ASHGO Peroxisomal biogenesis factor 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PEX6
PE=3 SV=1
Length = 1021
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138
+S LL +DGL S+ GDG ++ T+ D +D LRP D +L
Sbjct: 845 VSQLLAELDGL-STGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLG 891
>sp|Q6FW67|PEX6_CANGA Peroxisomal biogenesis factor 6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PEX6 PE=3 SV=1
Length = 1017
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138
+S LL +DG+ SS GDG ++ T+ D +D LRP D +L
Sbjct: 840 VSQLLAELDGM-SSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLG 886
>sp|P36966|PEX6_YARLI Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX6 PE=3 SV=2
Length = 1024
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL---SSHTFRHYLF 147
+S LL +DG+ ++ G+G +V T+ D +D LRP D +L +H + +
Sbjct: 841 VSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIM 900
Query: 148 EKIEERL 154
E + +
Sbjct: 901 EALTRKF 907
>sp|O74345|UCP3_SCHPO UBA domain-containing protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ucp3 PE=4 SV=1
Length = 601
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 6 INNNRPSYWNSNKFEHPATSNTIATDFDMNKALVDDY 42
IN NR YWN N HP +N ++ + M K + D Y
Sbjct: 82 INANR--YWNPNPLSHPLPTNALSDEHVMEKYIRDKY 116
>sp|C1F8X6|FTSH_ACIC5 ATP-dependent zinc metalloprotease FtsH OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=ftsH PE=3 SV=1
Length = 639
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132
L+ LL +DG + DG ILV T+ D +DP LRP D
Sbjct: 279 LNQLLVEMDGF--EANDGVILVAATNRPDVLDPALLRPGRFD 318
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 54 AAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSVA--------LSALLKFVDGLWSSS 105
A + DL K+ ++ + I+ I++ ++ A N+V L+ LL +DG S
Sbjct: 319 ARVRDL-FKQAETKAPCIIFIDELDALGKTRALNAVGGNEEREQTLNQLLVEMDGF--DS 375
Query: 106 GDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL 137
G I++ T+ + +DP LRP D H L
Sbjct: 376 NKGVIIMAATNRPEILDPALLRPGRFDRHVAL 407
>sp|D2Q9C6|ARC_BIFDB AAA ATPase forming ring-shaped complexes OS=Bifidobacterium dentium
(strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) GN=arc
PE=3 SV=1
Length = 529
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 46 YTGKSSLIAAMADLDLKEFQSNSRSILVIEDAVTSF-------ESNAYNSVALSALLKFV 98
+ G+S + M +E ++ R ++V D + S S+ + + L +
Sbjct: 290 FVGESERLIRMIFRRARERAADGRPVIVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSEL 349
Query: 99 DGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHL-------SSHTFRHYLFEKI 150
DG+ S D +++ ++ D IDP LRP +D+ + + RHYL + +
Sbjct: 350 DGV--ESLDNVMVIGASNRIDMIDPAVLRPGRLDVKIRVERPKAKQAEQIIRHYLTDDL 406
>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3
Length = 1140
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 53 IAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSV------ALSALLKFVDGLWSSSG 106
++A+A + L F + SI+ +E AV + Y+ + L+ L + L SS
Sbjct: 657 LSALASVSLSWFLTLFLSIMPLESAVNVVDCFFYDGIKAIFQLGLAVLEANAEDLCSSKD 716
Query: 107 DGRILVMTTDYKDHI 121
DG+ L++ + + DHI
Sbjct: 717 DGQALMILSRFLDHI 731
>sp|D3FA80|FTSH2_CONWI ATP-dependent zinc metalloprotease FtsH 2 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH2 PE=3 SV=1
Length = 691
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 82 ESNAYNSVALSALLKFVDGLWSSSGDGRILVM-TTDYKDHIDPVPLRPSCMD 132
+ N L+ LL +DG SGDG ++VM T+ D +DP LRP D
Sbjct: 339 QGNDEREQTLNQLLVEMDGF---SGDGGLVVMGATNRPDILDPALLRPGRFD 387
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134
L+ LL +DG S +G I++ T+ D +DP LRP D H
Sbjct: 284 LNQLLVEMDGF--SVNEGIIVIAATNRPDILDPALLRPGRFDRH 325
>sp|O67077|FTSH_AQUAE ATP-dependent zinc metalloprotease FtsH OS=Aquifex aeolicus (strain
VF5) GN=ftsH PE=1 SV=1
Length = 634
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFR-HYLFEK 149
L+ LL +DG +S DG I++ T+ D +DP LRP D + R Y K
Sbjct: 279 LNQLLVEMDGFDTS--DGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILK 336
Query: 150 IEERLAKI 157
+ R K+
Sbjct: 337 VHARNKKL 344
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2
Length = 1134
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 53 IAAMADLDLKEFQSNSRSILVIEDAVTSFESNAYNSV------ALSALLKFVDGLWSSSG 106
++A+A + L F + SI+ +E AV + Y+ + L+ L + L SS
Sbjct: 656 LSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVLEANAEELCSSKD 715
Query: 107 DGRILVMTTDYKDHI 121
DG+ L++ + + DHI
Sbjct: 716 DGQALMVLSRFLDHI 730
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,580,708
Number of Sequences: 539616
Number of extensions: 2375826
Number of successful extensions: 6296
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 6280
Number of HSP's gapped (non-prelim): 43
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)