Query 036857
Match_columns 170
No_of_seqs 137 out of 1143
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 3.7E-42 8E-47 298.8 11.1 169 2-170 171-415 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 4.7E-35 1E-39 248.8 11.3 150 17-168 142-365 (406)
3 KOG0736 Peroxisome assembly fa 100.0 6E-32 1.3E-36 246.0 11.5 151 18-168 664-888 (953)
4 KOG0730 AAA+-type ATPase [Post 100.0 1E-31 2.3E-36 241.4 9.7 149 18-168 426-645 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 8.2E-31 1.8E-35 234.3 9.8 146 21-168 506-726 (802)
6 KOG0734 AAA+-type ATPase conta 100.0 6.6E-30 1.4E-34 226.0 10.2 145 22-168 300-514 (752)
7 KOG0726 26S proteasome regulat 100.0 1.5E-29 3.1E-34 211.5 8.3 151 16-168 175-399 (440)
8 KOG0727 26S proteasome regulat 100.0 3.1E-29 6.6E-34 206.5 9.8 147 20-168 149-369 (408)
9 KOG0733 Nuclear AAA ATPase (VC 99.9 1.3E-27 2.9E-32 213.8 10.4 133 22-154 186-377 (802)
10 KOG0735 AAA+-type ATPase [Post 99.9 1.1E-27 2.3E-32 217.2 9.3 153 14-168 653-878 (952)
11 KOG0731 AAA+-type ATPase conta 99.9 2.9E-27 6.3E-32 217.1 11.0 146 21-168 306-526 (774)
12 KOG0728 26S proteasome regulat 99.9 6.4E-28 1.4E-32 198.5 5.3 119 18-142 166-320 (404)
13 KOG0738 AAA+-type ATPase [Post 99.9 3.3E-27 7.2E-32 202.7 7.4 145 21-168 207-425 (491)
14 KOG0652 26S proteasome regulat 99.9 5.7E-27 1.2E-31 193.9 8.4 148 19-168 164-385 (424)
15 KOG0729 26S proteasome regulat 99.9 1.6E-25 3.5E-30 185.8 10.2 123 18-142 169-350 (435)
16 COG0465 HflB ATP-dependent Zn 99.9 2.1E-25 4.5E-30 201.3 10.5 147 20-168 144-363 (596)
17 PTZ00454 26S protease regulato 99.9 4.4E-25 9.6E-30 192.6 11.2 149 18-168 137-359 (398)
18 COG1223 Predicted ATPase (AAA+ 99.9 2.2E-25 4.7E-30 184.0 7.5 148 19-170 114-329 (368)
19 TIGR01243 CDC48 AAA family ATP 99.9 9.9E-25 2.1E-29 202.5 11.9 146 21-168 448-665 (733)
20 COG0464 SpoVK ATPases of the A 99.9 1.4E-24 3.1E-29 193.1 11.4 145 22-168 238-455 (494)
21 CHL00195 ycf46 Ycf46; Provisio 99.9 1.9E-24 4.1E-29 192.7 10.6 143 22-168 224-437 (489)
22 KOG0651 26S proteasome regulat 99.9 9.8E-25 2.1E-29 183.3 7.6 122 19-142 123-305 (388)
23 TIGR01241 FtsH_fam ATP-depende 99.9 3E-24 6.5E-29 191.5 11.3 147 20-168 49-268 (495)
24 TIGR03689 pup_AAA proteasome A 99.9 1.9E-24 4.1E-29 193.2 9.4 122 19-142 175-367 (512)
25 PTZ00361 26 proteosome regulat 99.9 7.2E-24 1.6E-28 186.8 9.9 150 17-168 174-397 (438)
26 PRK03992 proteasome-activating 99.9 2.7E-23 5.9E-28 180.7 10.5 147 20-168 125-345 (389)
27 KOG0741 AAA+-type ATPase [Post 99.9 4.9E-24 1.1E-28 188.8 5.6 144 23-168 236-448 (744)
28 PLN00020 ribulose bisphosphate 99.9 3.2E-23 6.9E-28 178.5 10.0 119 43-166 154-323 (413)
29 KOG0739 AAA+-type ATPase [Post 99.9 1.8E-23 3.9E-28 175.4 6.7 120 20-142 127-301 (439)
30 CHL00176 ftsH cell division pr 99.9 1.3E-22 2.9E-27 185.7 10.9 146 21-168 178-396 (638)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.5E-22 3.3E-27 197.9 9.9 99 69-168 1733-1850(2281)
32 PRK10733 hflB ATP-dependent me 99.9 1E-21 2.3E-26 180.3 10.2 145 22-168 148-365 (644)
33 TIGR01242 26Sp45 26S proteasom 99.9 3E-21 6.5E-26 166.1 10.6 149 18-168 114-336 (364)
34 KOG0737 AAA+-type ATPase [Post 99.8 2E-21 4.3E-26 166.0 7.6 144 23-168 89-304 (386)
35 KOG0732 AAA+-type ATPase conta 99.8 2.6E-21 5.6E-26 182.2 8.1 127 14-142 253-440 (1080)
36 KOG0740 AAA+-type ATPase [Post 99.8 1.3E-19 2.9E-24 158.3 8.8 120 21-142 148-322 (428)
37 TIGR01243 CDC48 AAA family ATP 99.8 2.6E-19 5.6E-24 166.4 10.4 120 21-142 173-348 (733)
38 KOG0730 AAA+-type ATPase [Post 99.8 6.7E-19 1.4E-23 159.1 7.7 97 43-142 224-353 (693)
39 PF00004 AAA: ATPase family as 99.8 7.5E-19 1.6E-23 128.2 6.2 95 43-139 4-132 (132)
40 KOG0744 AAA+-type ATPase [Post 99.7 2.1E-17 4.6E-22 140.0 4.6 115 24-142 140-329 (423)
41 KOG0742 AAA+-type ATPase [Post 99.6 5.6E-16 1.2E-20 134.9 8.1 117 20-142 349-517 (630)
42 PF05673 DUF815: Protein of un 99.6 5.9E-15 1.3E-19 121.2 10.7 148 11-164 12-219 (249)
43 TIGR02881 spore_V_K stage V sp 99.5 6.5E-14 1.4E-18 115.5 9.9 112 25-142 5-180 (261)
44 CHL00181 cbbX CbbX; Provisiona 99.5 1.4E-13 3.1E-18 115.6 8.8 112 25-142 22-198 (287)
45 COG2607 Predicted ATPase (AAA+ 99.5 2.7E-13 5.9E-18 111.1 10.1 131 11-146 45-232 (287)
46 PHA02544 44 clamp loader, smal 99.5 3.9E-13 8.6E-18 112.8 10.6 118 13-142 8-162 (316)
47 PF05496 RuvB_N: Holliday junc 99.4 7.1E-13 1.5E-17 107.9 10.3 117 18-142 16-181 (233)
48 PRK00080 ruvB Holliday junctio 99.4 6.5E-13 1.4E-17 112.8 10.3 116 19-142 18-182 (328)
49 TIGR00635 ruvB Holliday juncti 99.4 1.2E-12 2.5E-17 109.5 10.6 111 24-142 2-161 (305)
50 TIGR00763 lon ATP-dependent pr 99.4 5.6E-13 1.2E-17 125.0 7.8 111 27-142 321-494 (775)
51 TIGR02880 cbbX_cfxQ probable R 99.4 1.3E-12 2.8E-17 109.5 8.5 110 27-142 23-197 (284)
52 PLN03025 replication factor C 99.4 2.3E-12 5E-17 109.2 9.5 137 16-166 3-185 (319)
53 PRK14962 DNA polymerase III su 99.3 5.8E-12 1.2E-16 112.4 10.8 112 18-142 6-178 (472)
54 PRK04195 replication factor C 99.3 6.6E-12 1.4E-16 112.0 10.9 117 16-142 4-162 (482)
55 PRK14956 DNA polymerase III su 99.3 5.1E-12 1.1E-16 112.7 9.2 114 16-142 8-182 (484)
56 TIGR02639 ClpA ATP-dependent C 99.3 4E-12 8.6E-17 118.6 8.6 137 21-166 177-376 (731)
57 PRK07003 DNA polymerase III su 99.3 2E-11 4.4E-16 113.5 10.7 113 17-142 7-180 (830)
58 PRK14961 DNA polymerase III su 99.3 3.1E-11 6.6E-16 104.2 10.4 112 18-142 8-180 (363)
59 PRK13342 recombination factor 99.3 2.2E-11 4.8E-16 106.7 9.5 111 17-142 3-153 (413)
60 KOG0989 Replication factor C, 99.3 1.8E-11 4E-16 103.2 8.4 111 16-139 26-187 (346)
61 COG0466 Lon ATP-dependent Lon 99.3 9.9E-12 2.1E-16 114.1 6.8 109 29-141 326-497 (782)
62 TIGR03345 VI_ClpV1 type VI sec 99.3 1.9E-11 4E-16 115.9 8.8 137 20-165 181-380 (852)
63 PRK12323 DNA polymerase III su 99.2 1.9E-11 4.1E-16 112.3 7.9 112 18-142 8-185 (700)
64 COG2256 MGS1 ATPase related to 99.2 6.1E-12 1.3E-16 109.2 4.4 102 18-131 16-157 (436)
65 PRK06645 DNA polymerase III su 99.2 5.2E-11 1.1E-15 107.1 10.4 114 16-142 11-189 (507)
66 PF07726 AAA_3: ATPase family 99.2 9E-12 2E-16 93.4 3.9 81 43-131 5-129 (131)
67 PRK14963 DNA polymerase III su 99.2 1E-10 2.2E-15 105.3 11.2 112 18-142 6-177 (504)
68 KOG2004 Mitochondrial ATP-depe 99.2 2.6E-11 5.6E-16 111.4 7.4 110 29-142 414-586 (906)
69 PRK11034 clpA ATP-dependent Cl 99.2 3.4E-11 7.4E-16 112.7 8.4 110 25-142 185-351 (758)
70 PRK14958 DNA polymerase III su 99.2 4.6E-11 1E-15 107.6 8.6 113 17-142 7-180 (509)
71 PRK07994 DNA polymerase III su 99.2 1.3E-10 2.7E-15 107.1 11.5 111 19-142 9-180 (647)
72 PRK14964 DNA polymerase III su 99.2 5.4E-11 1.2E-15 106.6 8.9 111 19-142 6-177 (491)
73 PRK14960 DNA polymerase III su 99.2 6.1E-11 1.3E-15 109.1 9.0 112 18-142 7-179 (702)
74 PRK12402 replication factor C 99.2 1.6E-10 3.4E-15 97.3 10.9 113 17-142 6-186 (337)
75 PRK14970 DNA polymerase III su 99.2 1.8E-10 3.8E-15 99.1 11.1 112 18-142 9-169 (367)
76 PRK10865 protein disaggregatio 99.2 4.2E-11 9.1E-16 113.5 7.8 115 20-142 172-343 (857)
77 PRK14949 DNA polymerase III su 99.2 9.7E-11 2.1E-15 110.5 10.1 112 18-142 8-180 (944)
78 COG0714 MoxR-like ATPases [Gen 99.2 6.2E-11 1.3E-15 100.8 7.7 92 43-142 49-191 (329)
79 PRK05563 DNA polymerase III su 99.2 1.7E-10 3.7E-15 104.9 10.6 112 18-142 8-180 (559)
80 PRK06893 DNA replication initi 99.2 1.8E-10 3.8E-15 93.6 9.5 120 17-142 7-163 (229)
81 PRK14959 DNA polymerase III su 99.2 9.5E-11 2.1E-15 107.4 8.5 113 17-142 7-180 (624)
82 TIGR02397 dnaX_nterm DNA polym 99.2 1.1E-10 2.5E-15 99.0 8.3 112 18-142 6-178 (355)
83 PRK07764 DNA polymerase III su 99.2 1.8E-10 3.9E-15 108.7 10.1 112 18-142 7-181 (824)
84 PRK05896 DNA polymerase III su 99.1 1.7E-10 3.7E-15 105.4 9.2 112 18-142 8-180 (605)
85 PRK00440 rfc replication facto 99.1 4.9E-10 1.1E-14 93.5 10.7 115 15-142 6-163 (319)
86 PRK13407 bchI magnesium chelat 99.1 2.6E-10 5.7E-15 97.8 9.2 115 20-142 2-204 (334)
87 PRK11331 5-methylcytosine-spec 99.1 8.5E-11 1.8E-15 104.1 6.1 102 25-133 174-352 (459)
88 PRK08691 DNA polymerase III su 99.1 2E-10 4.3E-15 106.2 8.2 112 18-142 8-180 (709)
89 PRK14957 DNA polymerase III su 99.1 4.6E-10 1E-14 101.8 10.2 112 18-142 8-180 (546)
90 PRK14952 DNA polymerase III su 99.1 3.4E-10 7.4E-15 103.4 9.4 112 18-142 5-179 (584)
91 PRK14965 DNA polymerase III su 99.1 2.5E-10 5.4E-15 104.2 8.1 115 15-142 5-180 (576)
92 PF07728 AAA_5: AAA domain (dy 99.1 9.6E-11 2.1E-15 87.2 4.5 81 43-131 5-139 (139)
93 PRK14969 DNA polymerase III su 99.1 2.3E-10 5E-15 103.4 7.7 112 18-142 8-180 (527)
94 TIGR03346 chaperone_ClpB ATP-d 99.1 2.8E-10 6E-15 108.0 8.4 115 20-142 167-338 (852)
95 PRK06305 DNA polymerase III su 99.1 7.2E-10 1.6E-14 98.5 10.6 112 18-142 9-182 (451)
96 TIGR01650 PD_CobS cobaltochela 99.1 4.6E-10 1E-14 95.9 8.9 68 69-144 135-224 (327)
97 PRK14951 DNA polymerase III su 99.1 5.2E-10 1.1E-14 102.7 9.8 112 18-142 8-185 (618)
98 PRK07133 DNA polymerase III su 99.1 3.5E-10 7.7E-15 105.1 8.5 115 15-142 7-179 (725)
99 PRK07940 DNA polymerase III su 99.1 2.4E-10 5.3E-15 100.0 6.8 106 24-142 3-178 (394)
100 PRK10787 DNA-binding ATP-depen 99.1 2.5E-10 5.5E-15 107.4 6.9 109 28-142 324-495 (784)
101 PRK06647 DNA polymerase III su 99.1 7.4E-10 1.6E-14 100.9 9.7 112 18-142 8-180 (563)
102 PRK13341 recombination factor 99.1 7.2E-10 1.6E-14 103.5 9.7 112 16-142 18-170 (725)
103 COG2255 RuvB Holliday junction 99.0 1.3E-09 2.8E-14 91.5 9.5 115 19-142 19-183 (332)
104 PRK14955 DNA polymerase III su 99.0 5.9E-10 1.3E-14 97.4 7.7 112 18-142 8-188 (397)
105 TIGR02640 gas_vesic_GvpN gas v 99.0 4.8E-10 1E-14 92.8 6.6 65 69-142 106-187 (262)
106 CHL00095 clpC Clp protease ATP 99.0 6.1E-10 1.3E-14 105.3 8.1 111 24-142 177-343 (821)
107 PRK08451 DNA polymerase III su 99.0 1.9E-09 4.1E-14 97.6 10.8 112 18-142 6-178 (535)
108 TIGR02902 spore_lonB ATP-depen 99.0 1.6E-09 3.4E-14 98.1 10.4 116 18-142 57-265 (531)
109 PRK08903 DnaA regulatory inact 99.0 3E-09 6.6E-14 85.5 10.5 137 17-164 9-182 (227)
110 PRK09111 DNA polymerase III su 99.0 1.8E-09 3.9E-14 98.9 10.3 114 16-142 14-193 (598)
111 cd00009 AAA The AAA+ (ATPases 99.0 1.6E-09 3.4E-14 78.4 7.9 88 43-138 25-150 (151)
112 PRK14953 DNA polymerase III su 99.0 1.6E-09 3.4E-14 97.2 9.2 112 18-142 8-180 (486)
113 KOG2028 ATPase related to the 99.0 8.3E-11 1.8E-15 101.8 0.4 103 18-132 130-276 (554)
114 TIGR02030 BchI-ChlI magnesium 99.0 2.2E-09 4.8E-14 92.2 9.1 66 69-142 132-207 (337)
115 TIGR03420 DnaA_homol_Hda DnaA 99.0 2.4E-09 5.3E-14 85.4 8.8 138 17-164 6-184 (226)
116 PRK11034 clpA ATP-dependent Cl 99.0 2.4E-09 5.2E-14 100.5 9.6 92 43-142 494-655 (758)
117 KOG0735 AAA+-type ATPase [Post 99.0 3.3E-09 7.2E-14 97.8 9.9 117 26-142 408-575 (952)
118 PRK14948 DNA polymerase III su 99.0 4.4E-09 9.5E-14 96.8 10.3 112 18-142 8-182 (620)
119 CHL00081 chlI Mg-protoporyphyr 99.0 1.9E-09 4E-14 93.1 7.4 112 23-142 14-220 (350)
120 PRK14950 DNA polymerase III su 98.9 4.4E-09 9.6E-14 96.2 10.1 112 18-142 8-181 (585)
121 PRK05342 clpX ATP-dependent pr 98.9 3.7E-09 8.1E-14 93.1 9.0 75 43-117 114-239 (412)
122 PRK14954 DNA polymerase III su 98.9 6.4E-09 1.4E-13 95.7 10.1 112 18-142 8-188 (620)
123 PRK08727 hypothetical protein; 98.9 1E-08 2.2E-13 83.5 9.4 117 17-142 10-164 (233)
124 COG0464 SpoVK ATPases of the A 98.9 2.6E-09 5.5E-14 95.4 6.1 97 43-142 24-152 (494)
125 TIGR00382 clpX endopeptidase C 98.9 7.2E-09 1.6E-13 91.2 8.7 75 43-117 122-247 (413)
126 TIGR02639 ClpA ATP-dependent C 98.9 7.7E-09 1.7E-13 96.7 9.0 92 43-142 490-651 (731)
127 PF01078 Mg_chelatase: Magnesi 98.9 4.8E-09 1E-13 84.4 6.4 87 24-116 1-157 (206)
128 PRK08084 DNA replication initi 98.8 2.5E-08 5.4E-13 81.3 9.8 118 18-142 14-169 (235)
129 smart00350 MCM minichromosome 98.8 3.1E-08 6.7E-13 89.2 11.1 92 43-142 242-389 (509)
130 PRK00149 dnaA chromosomal repl 98.8 1.2E-08 2.6E-13 90.3 8.2 92 43-142 154-282 (450)
131 PRK14971 DNA polymerase III su 98.8 2.6E-08 5.7E-13 91.6 10.3 113 17-142 8-182 (614)
132 TIGR00362 DnaA chromosomal rep 98.8 2.3E-08 4.9E-13 87.3 9.3 92 43-142 142-270 (405)
133 PHA02244 ATPase-like protein 98.8 1.2E-08 2.5E-13 88.7 7.3 90 43-142 125-263 (383)
134 PRK09112 DNA polymerase III su 98.8 5.7E-08 1.2E-12 83.9 11.4 111 19-142 16-202 (351)
135 smart00382 AAA ATPases associa 98.8 1.5E-08 3.3E-13 72.2 6.6 69 69-140 79-147 (148)
136 PRK07471 DNA polymerase III su 98.8 2.4E-08 5.2E-13 86.7 8.8 111 19-142 12-202 (365)
137 TIGR00678 holB DNA polymerase 98.8 4.8E-08 1E-12 76.4 9.6 62 69-143 97-158 (188)
138 COG2812 DnaX DNA polymerase II 98.8 9.7E-09 2.1E-13 92.4 6.0 99 19-127 9-168 (515)
139 TIGR02928 orc1/cdc6 family rep 98.7 6E-08 1.3E-12 82.8 9.7 68 69-142 130-201 (365)
140 TIGR02442 Cob-chelat-sub cobal 98.7 4.9E-08 1.1E-12 90.1 9.6 111 24-142 2-202 (633)
141 PRK13531 regulatory ATPase Rav 98.7 6.3E-08 1.4E-12 86.8 9.8 67 69-143 108-183 (498)
142 PRK12422 chromosomal replicati 98.7 4.4E-08 9.6E-13 87.0 8.5 91 43-142 147-273 (445)
143 PRK05564 DNA polymerase III su 98.7 3.8E-08 8.2E-13 83.2 7.3 106 24-142 2-154 (313)
144 PRK14086 dnaA chromosomal repl 98.7 4.8E-08 1E-12 89.6 8.3 91 43-142 320-448 (617)
145 PRK00411 cdc6 cell division co 98.7 1.3E-07 2.7E-12 81.7 10.3 67 69-142 139-209 (394)
146 TIGR02903 spore_lon_C ATP-depe 98.7 1.4E-07 3.1E-12 86.8 10.3 40 18-57 146-196 (615)
147 PRK06620 hypothetical protein; 98.7 6.2E-08 1.3E-12 78.2 6.8 87 43-143 50-150 (214)
148 CHL00095 clpC Clp protease ATP 98.7 1E-07 2.3E-12 90.2 9.3 109 26-142 509-721 (821)
149 TIGR03346 chaperone_ClpB ATP-d 98.6 1.5E-07 3.3E-12 89.5 10.1 66 69-142 668-765 (852)
150 PRK09862 putative ATP-dependen 98.6 9.5E-08 2.1E-12 86.1 8.1 110 24-141 189-389 (506)
151 COG1239 ChlI Mg-chelatase subu 98.6 3.1E-07 6.6E-12 80.6 10.5 66 69-142 145-220 (423)
152 TIGR02031 BchD-ChlD magnesium 98.6 1.6E-07 3.4E-12 86.1 8.0 92 43-142 22-162 (589)
153 PRK14088 dnaA chromosomal repl 98.6 1.6E-07 3.5E-12 83.3 7.5 91 43-142 136-265 (440)
154 KOG0736 Peroxisome assembly fa 98.6 2.4E-07 5.2E-12 86.3 8.4 123 43-168 437-606 (953)
155 PRK05642 DNA replication initi 98.5 4.7E-07 1E-11 73.8 9.0 91 43-142 51-168 (234)
156 TIGR03345 VI_ClpV1 type VI sec 98.5 3.2E-07 6.9E-12 87.3 8.6 91 43-142 602-769 (852)
157 PRK10865 protein disaggregatio 98.5 4.1E-07 9E-12 86.6 9.1 66 69-142 671-768 (857)
158 smart00763 AAA_PrkA PrkA AAA d 98.5 5.7E-07 1.2E-11 78.0 8.9 65 69-142 237-315 (361)
159 TIGR00368 Mg chelatase-related 98.5 3.8E-07 8.3E-12 82.2 8.1 112 23-142 189-393 (499)
160 PF07724 AAA_2: AAA domain (Cd 98.5 2.4E-07 5.3E-12 72.4 5.9 77 43-119 9-131 (171)
161 PRK08058 DNA polymerase III su 98.4 3.5E-07 7.6E-12 78.2 6.2 106 24-142 3-171 (329)
162 COG0542 clpA ATP-binding subun 98.4 3.3E-07 7.3E-12 85.9 6.0 91 44-142 528-694 (786)
163 PRK12377 putative replication 98.4 6.5E-07 1.4E-11 74.0 6.8 68 43-117 107-205 (248)
164 COG0606 Predicted ATPase with 98.4 3E-07 6.4E-12 81.8 4.4 36 22-57 175-219 (490)
165 PRK07952 DNA replication prote 98.4 7.9E-07 1.7E-11 73.3 6.4 68 43-117 105-204 (244)
166 PRK09087 hypothetical protein; 98.4 1.4E-06 3E-11 70.9 7.5 88 43-142 50-155 (226)
167 PTZ00112 origin recognition co 98.4 2.2E-06 4.8E-11 81.5 9.8 65 69-142 870-938 (1164)
168 PRK08116 hypothetical protein; 98.4 7.2E-07 1.6E-11 74.3 5.8 96 43-147 120-256 (268)
169 PRK05707 DNA polymerase III su 98.3 1.1E-06 2.5E-11 75.2 6.9 61 69-142 107-167 (328)
170 PRK06526 transposase; Provisio 98.3 5.9E-07 1.3E-11 74.4 4.4 68 43-118 104-201 (254)
171 PF00910 RNA_helicase: RNA hel 98.3 2.2E-06 4.8E-11 61.7 6.8 73 43-117 4-107 (107)
172 PF00308 Bac_DnaA: Bacterial d 98.3 5.8E-06 1.3E-10 66.8 9.6 92 43-142 40-168 (219)
173 PRK08181 transposase; Validate 98.3 1.1E-06 2.5E-11 73.4 5.6 68 43-118 112-209 (269)
174 TIGR00602 rad24 checkpoint pro 98.3 4E-06 8.7E-11 77.6 9.2 43 15-57 73-131 (637)
175 KOG0991 Replication factor C, 98.3 7.9E-07 1.7E-11 73.4 3.8 44 14-57 15-69 (333)
176 PRK06921 hypothetical protein; 98.2 2.4E-06 5.2E-11 71.2 6.2 76 43-121 123-229 (266)
177 PTZ00111 DNA replication licen 98.2 3.2E-06 7E-11 80.5 7.6 92 43-142 498-646 (915)
178 PRK07399 DNA polymerase III su 98.2 8.2E-06 1.8E-10 69.5 9.2 105 24-142 2-184 (314)
179 PRK05201 hslU ATP-dependent pr 98.2 4.1E-06 8.8E-11 74.2 7.2 95 69-165 250-374 (443)
180 KOG0990 Replication factor C, 98.2 2E-06 4.3E-11 73.4 5.1 103 15-127 30-180 (360)
181 KOG1969 DNA replication checkp 98.2 2.3E-06 5.1E-11 79.4 5.8 120 15-142 260-470 (877)
182 PF00158 Sigma54_activat: Sigm 98.2 4E-06 8.7E-11 65.3 6.1 43 69-117 94-143 (168)
183 TIGR00764 lon_rel lon-related 98.2 7.5E-06 1.6E-10 75.5 8.7 35 23-57 15-58 (608)
184 PRK13406 bchD magnesium chelat 98.2 1.8E-05 4E-10 72.6 10.9 66 69-142 94-171 (584)
185 PRK08939 primosomal protein Dn 98.2 4.3E-06 9.4E-11 71.0 6.3 69 43-118 162-261 (306)
186 PF13177 DNA_pol3_delta2: DNA 98.2 4.8E-06 1E-10 64.3 6.0 49 69-127 103-151 (162)
187 PRK14087 dnaA chromosomal repl 98.2 5.4E-06 1.2E-10 73.9 7.1 91 43-142 147-277 (450)
188 COG0470 HolB ATPase involved i 98.1 7.6E-06 1.6E-10 68.2 7.4 61 69-142 110-170 (325)
189 TIGR00390 hslU ATP-dependent p 98.1 6.7E-06 1.5E-10 72.8 7.1 95 69-165 248-372 (441)
190 COG0542 clpA ATP-binding subun 98.1 5.6E-06 1.2E-10 77.8 6.9 110 24-142 168-335 (786)
191 PRK06964 DNA polymerase III su 98.1 7.4E-06 1.6E-10 70.7 7.2 61 69-142 133-193 (342)
192 COG1474 CDC6 Cdc6-related prot 98.1 9.1E-06 2E-10 70.7 7.6 65 69-142 124-192 (366)
193 PRK06835 DNA replication prote 98.1 5E-06 1.1E-10 71.4 5.9 68 43-117 189-288 (329)
194 COG1219 ClpX ATP-dependent pro 98.1 7.3E-06 1.6E-10 70.2 6.3 75 44-118 104-229 (408)
195 PRK09183 transposase/IS protei 98.1 6.1E-06 1.3E-10 68.4 5.7 68 43-118 108-206 (259)
196 PF01695 IstB_IS21: IstB-like 98.1 3.2E-06 7E-11 66.4 3.6 68 43-118 53-150 (178)
197 PF00493 MCM: MCM2/3/5 family 98.0 4.2E-06 9.1E-11 71.7 4.1 92 43-142 63-210 (331)
198 PRK11608 pspF phage shock prot 98.0 3.3E-05 7.1E-10 66.0 9.4 66 69-142 101-181 (326)
199 PRK11388 DNA-binding transcrip 98.0 3.5E-05 7.5E-10 71.1 9.8 89 24-118 323-467 (638)
200 KOG0478 DNA replication licens 98.0 1.3E-05 2.9E-10 74.0 6.8 94 44-142 469-615 (804)
201 TIGR02974 phageshock_pspF psp 98.0 2.4E-05 5.3E-10 67.0 7.9 43 69-117 94-143 (329)
202 KOG0741 AAA+-type ATPase [Post 98.0 1.2E-05 2.5E-10 72.9 5.7 104 43-149 544-681 (744)
203 TIGR01817 nifA Nif-specific re 98.0 6E-05 1.3E-09 68.2 10.4 35 23-57 193-240 (534)
204 PRK04132 replication factor C 98.0 6.2E-05 1.4E-09 71.7 10.4 60 70-142 632-691 (846)
205 PRK13765 ATP-dependent proteas 97.9 4.8E-05 1E-09 70.5 9.2 38 20-57 25-71 (637)
206 PF03215 Rad17: Rad17 cell cyc 97.9 3E-05 6.5E-10 70.3 7.7 45 13-57 6-66 (519)
207 PLN03210 Resistant to P. syrin 97.9 4.7E-05 1E-09 74.7 8.8 43 15-57 173-228 (1153)
208 COG1484 DnaC DNA replication p 97.9 2E-05 4.4E-10 65.2 5.4 69 43-119 111-210 (254)
209 PF14532 Sigma54_activ_2: Sigm 97.9 2E-05 4.4E-10 58.8 4.6 65 43-116 27-108 (138)
210 PRK06090 DNA polymerase III su 97.9 0.00016 3.5E-09 61.9 10.4 61 69-142 109-169 (319)
211 PRK08769 DNA polymerase III su 97.9 0.00013 2.7E-09 62.5 9.8 61 69-142 114-174 (319)
212 PF05707 Zot: Zonular occluden 97.8 2E-05 4.4E-10 62.2 4.4 68 69-141 80-147 (193)
213 PRK10820 DNA-binding transcrip 97.8 0.00016 3.5E-09 65.5 10.2 38 20-57 198-248 (520)
214 PRK06871 DNA polymerase III su 97.8 6.8E-05 1.5E-09 64.4 7.2 61 69-142 108-168 (325)
215 PRK15429 formate hydrogenlyase 97.8 0.00013 2.9E-09 67.9 9.5 35 23-57 373-420 (686)
216 COG3829 RocR Transcriptional r 97.8 5.6E-05 1.2E-09 68.4 6.6 93 19-117 238-390 (560)
217 cd01120 RecA-like_NTPases RecA 97.8 9E-05 2E-09 54.8 6.8 15 43-57 5-20 (165)
218 TIGR01618 phage_P_loop phage n 97.8 4.9E-05 1.1E-09 61.9 5.6 70 43-113 18-140 (220)
219 KOG0480 DNA replication licens 97.7 4E-05 8.7E-10 70.5 5.1 91 44-142 385-531 (764)
220 PF03969 AFG1_ATPase: AFG1-lik 97.7 4.6E-05 1E-09 66.2 5.1 70 43-121 68-172 (362)
221 PRK08699 DNA polymerase III su 97.7 5.6E-05 1.2E-09 64.8 5.4 61 69-142 114-174 (325)
222 COG1241 MCM2 Predicted ATPase 97.7 4.6E-05 1E-09 70.9 5.2 91 44-142 326-472 (682)
223 PRK07993 DNA polymerase III su 97.7 8.2E-05 1.8E-09 64.0 6.1 61 69-142 109-169 (334)
224 PF13401 AAA_22: AAA domain; P 97.7 8.9E-05 1.9E-09 53.8 5.4 15 43-57 10-25 (131)
225 COG1220 HslU ATP-dependent pro 97.7 0.00017 3.7E-09 62.5 7.8 85 69-155 251-361 (444)
226 PRK11361 acetoacetate metaboli 97.6 0.00029 6.4E-09 61.8 8.5 43 69-117 238-287 (457)
227 KOG0745 Putative ATP-dependent 97.6 0.00016 3.4E-09 64.3 6.6 98 43-142 232-388 (564)
228 KOG1051 Chaperone HSP104 and r 97.6 0.00013 2.8E-09 69.6 6.1 68 44-117 598-710 (898)
229 PF12775 AAA_7: P-loop contain 97.6 0.00017 3.7E-09 60.3 6.0 70 69-142 101-182 (272)
230 TIGR02329 propionate_PrpR prop 97.6 0.00026 5.7E-09 64.4 7.6 36 22-57 208-256 (526)
231 COG1116 TauB ABC-type nitrate/ 97.5 0.00023 5E-09 58.9 6.5 14 44-57 36-50 (248)
232 TIGR03015 pepcterm_ATPase puta 97.5 0.00068 1.5E-08 55.3 8.9 15 43-57 49-64 (269)
233 PF05729 NACHT: NACHT domain 97.5 0.00027 5.9E-09 52.7 6.1 15 43-57 6-21 (166)
234 KOG2170 ATPase of the AAA+ sup 97.5 0.00017 3.6E-09 61.4 4.9 30 28-57 84-131 (344)
235 KOG1514 Origin recognition com 97.5 0.00017 3.8E-09 66.9 5.3 45 69-120 509-553 (767)
236 PRK08118 topology modulation p 97.4 0.00016 3.5E-09 56.0 4.1 79 43-142 7-90 (167)
237 TIGR02915 PEP_resp_reg putativ 97.4 0.0013 2.7E-08 57.8 9.9 15 43-57 168-183 (445)
238 PRK10923 glnG nitrogen regulat 97.4 0.0011 2.4E-08 58.6 9.6 66 69-142 233-313 (469)
239 PRK05022 anaerobic nitric oxid 97.4 0.00045 9.7E-09 62.4 7.1 34 24-57 185-231 (509)
240 COG1224 TIP49 DNA helicase TIP 97.4 0.0014 3.1E-08 57.1 9.6 14 44-57 72-86 (450)
241 PF06068 TIP49: TIP49 C-termin 97.4 0.00044 9.4E-09 60.5 6.4 33 25-57 23-71 (398)
242 cd01124 KaiC KaiC is a circadi 97.4 0.00051 1.1E-08 52.8 6.1 46 69-119 96-141 (187)
243 PF13173 AAA_14: AAA domain 97.3 0.00051 1.1E-08 50.5 5.5 15 43-57 8-23 (128)
244 COG0593 DnaA ATPase involved i 97.3 0.00092 2E-08 59.0 7.7 92 43-142 119-246 (408)
245 PRK15115 response regulator Gl 97.3 0.0012 2.5E-08 58.0 8.4 54 69-131 229-289 (444)
246 PRK15424 propionate catabolism 97.3 0.00055 1.2E-08 62.5 6.5 35 23-57 216-263 (538)
247 PRK07261 topology modulation p 97.3 0.00018 4E-09 55.8 2.9 83 43-142 6-90 (171)
248 PF13604 AAA_30: AAA domain; P 97.3 0.00072 1.6E-08 53.6 6.2 43 69-121 94-136 (196)
249 KOG1942 DNA helicase, TBP-inte 97.3 0.002 4.3E-08 55.2 8.9 61 69-142 297-370 (456)
250 TIGR01818 ntrC nitrogen regula 97.2 0.0018 3.8E-08 57.1 8.8 15 43-57 163-178 (463)
251 PF12774 AAA_6: Hydrolytic ATP 97.2 0.0022 4.7E-08 52.5 8.5 94 43-142 38-169 (231)
252 COG2204 AtoC Response regulato 97.2 0.0011 2.4E-08 59.4 7.3 88 24-117 139-285 (464)
253 PF05272 VirE: Virulence-assoc 97.2 0.00021 4.5E-09 57.2 2.4 90 43-138 58-168 (198)
254 KOG0482 DNA replication licens 97.2 0.00017 3.8E-09 65.2 2.1 111 27-142 343-528 (721)
255 PF00931 NB-ARC: NB-ARC domain 97.2 0.00068 1.5E-08 55.6 5.3 15 43-57 25-40 (287)
256 PF01637 Arch_ATPase: Archaeal 97.2 0.0022 4.7E-08 50.2 7.8 69 69-142 119-193 (234)
257 KOG0477 DNA replication licens 97.1 0.00042 9.1E-09 64.0 3.8 72 43-117 488-598 (854)
258 COG1618 Predicted nucleotide k 97.1 0.0016 3.5E-08 51.0 6.5 14 44-57 12-26 (179)
259 COG1221 PspF Transcriptional r 97.1 0.00088 1.9E-08 59.1 5.2 114 22-142 74-251 (403)
260 PF13086 AAA_11: AAA domain; P 97.0 0.00036 7.7E-09 54.7 2.3 15 43-57 23-38 (236)
261 PF05621 TniB: Bacterial TniB 97.0 0.0023 5.1E-08 54.4 7.0 93 69-167 146-246 (302)
262 PRK10365 transcriptional regul 96.9 0.0046 9.9E-08 54.0 8.6 15 43-57 168-183 (441)
263 KOG2035 Replication factor C, 96.9 0.0051 1.1E-07 52.2 8.4 114 16-142 3-188 (351)
264 PF06309 Torsin: Torsin; Inte 96.9 0.0019 4.1E-08 48.4 4.8 82 27-111 26-126 (127)
265 COG3604 FhlA Transcriptional r 96.9 0.002 4.3E-08 58.2 5.8 34 24-57 221-267 (550)
266 PRK05917 DNA polymerase III su 96.8 0.003 6.6E-08 53.5 6.3 60 69-141 96-155 (290)
267 TIGR02858 spore_III_AA stage I 96.8 0.0013 2.8E-08 55.1 3.9 15 43-57 117-132 (270)
268 PF13207 AAA_17: AAA domain; P 96.8 0.00066 1.4E-08 48.7 1.8 19 43-61 5-25 (121)
269 PRK07276 DNA polymerase III su 96.8 0.003 6.4E-08 53.5 6.0 58 69-139 105-162 (290)
270 PF03266 NTPase_1: NTPase; In 96.8 0.0012 2.7E-08 51.3 3.4 14 44-57 6-20 (168)
271 COG3839 MalK ABC-type sugar tr 96.8 0.001 2.2E-08 57.4 3.1 15 43-57 35-50 (338)
272 PRK05818 DNA polymerase III su 96.8 0.004 8.8E-08 52.0 6.4 59 69-140 89-147 (261)
273 COG1936 Predicted nucleotide k 96.7 0.0026 5.7E-08 50.1 4.8 34 44-77 7-46 (180)
274 TIGR02237 recomb_radB DNA repa 96.7 0.0053 1.1E-07 48.4 6.3 15 43-57 18-33 (209)
275 KOG0479 DNA replication licens 96.7 0.0037 8E-08 57.6 5.9 106 27-137 302-481 (818)
276 PRK13695 putative NTPase; Prov 96.6 0.0052 1.1E-07 47.3 5.8 14 44-57 7-21 (174)
277 COG1485 Predicted ATPase [Gene 96.6 0.0028 6E-08 55.0 4.6 70 43-121 71-175 (367)
278 COG1124 DppF ABC-type dipeptid 96.6 0.0049 1.1E-07 51.0 5.7 15 43-57 39-54 (252)
279 PRK06067 flagellar accessory p 96.6 0.0072 1.6E-07 48.7 6.5 15 43-57 31-46 (234)
280 COG2274 SunT ABC-type bacterio 96.6 0.0027 6E-08 59.7 4.5 15 43-57 505-520 (709)
281 cd01128 rho_factor Transcripti 96.6 0.0059 1.3E-07 50.5 6.0 15 43-57 22-37 (249)
282 PF13671 AAA_33: AAA domain; P 96.5 0.0013 2.9E-08 48.3 1.8 15 43-57 5-20 (143)
283 KOG1968 Replication factor C, 96.5 0.0054 1.2E-07 58.9 6.2 62 69-142 429-491 (871)
284 TIGR02012 tigrfam_recA protein 96.5 0.0053 1.2E-07 52.7 5.6 46 69-116 134-190 (321)
285 cd01394 radB RadB. The archaea 96.5 0.01 2.2E-07 47.2 6.9 15 43-57 25-40 (218)
286 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0026 5.6E-08 52.9 3.5 36 22-57 56-101 (264)
287 KOG1970 Checkpoint RAD17-RFC c 96.5 0.0062 1.3E-07 55.7 6.0 43 15-57 71-131 (634)
288 PRK08533 flagellar accessory p 96.5 0.0089 1.9E-07 48.6 6.5 46 69-118 118-163 (230)
289 PF13238 AAA_18: AAA domain; P 96.5 0.0016 3.4E-08 46.6 1.8 15 43-57 4-19 (129)
290 KOG0481 DNA replication licens 96.4 0.0052 1.1E-07 55.9 5.2 91 44-139 371-513 (729)
291 cd03216 ABC_Carb_Monos_I This 96.4 0.0049 1.1E-07 47.2 4.4 46 69-122 101-146 (163)
292 KOG3347 Predicted nucleotide k 96.4 0.0016 3.4E-08 50.5 1.5 15 43-57 13-28 (176)
293 PHA02774 E1; Provisional 96.4 0.0072 1.6E-07 55.7 6.0 78 43-125 440-540 (613)
294 COG3842 PotA ABC-type spermidi 96.4 0.0017 3.7E-08 56.4 1.9 14 44-57 38-52 (352)
295 PRK13541 cytochrome c biogenes 96.4 0.013 2.7E-07 46.0 6.7 48 69-124 142-189 (195)
296 KOG2383 Predicted ATPase [Gene 96.4 0.0079 1.7E-07 53.2 5.9 43 69-120 194-237 (467)
297 PF01583 APS_kinase: Adenylyls 96.4 0.0075 1.6E-07 46.7 5.1 28 44-75 9-37 (156)
298 PRK14722 flhF flagellar biosyn 96.3 0.0036 7.7E-08 54.8 3.6 52 69-126 216-267 (374)
299 PRK07132 DNA polymerase III su 96.3 0.012 2.7E-07 49.9 6.8 61 69-142 91-151 (299)
300 PHA00729 NTP-binding motif con 96.3 0.0021 4.4E-08 52.7 1.9 15 43-57 23-38 (226)
301 COG4608 AppF ABC-type oligopep 96.3 0.0071 1.5E-07 50.7 5.0 15 43-57 45-60 (268)
302 PF02562 PhoH: PhoH-like prote 96.3 0.0069 1.5E-07 48.9 4.8 15 43-57 25-40 (205)
303 COG4618 ArpD ABC-type protease 96.2 0.003 6.6E-08 57.2 2.6 45 69-121 491-535 (580)
304 cd02019 NK Nucleoside/nucleoti 96.2 0.0032 7E-08 41.6 1.9 14 44-57 6-20 (69)
305 KOG1805 DNA replication helica 96.2 0.012 2.7E-07 56.6 6.4 29 29-57 669-706 (1100)
306 cd00983 recA RecA is a bacter 96.1 0.013 2.9E-07 50.4 6.0 46 69-116 134-190 (325)
307 COG4619 ABC-type uncharacteriz 96.1 0.0055 1.2E-07 48.8 3.3 44 69-119 152-195 (223)
308 cd01121 Sms Sms (bacterial rad 96.1 0.013 2.9E-07 51.2 6.0 15 43-57 88-103 (372)
309 PRK03839 putative kinase; Prov 96.1 0.0032 6.9E-08 48.7 1.9 15 43-57 6-21 (180)
310 PRK06217 hypothetical protein; 96.1 0.0038 8.2E-08 48.6 2.3 20 43-62 7-28 (183)
311 PRK15455 PrkA family serine pr 96.1 0.0032 6.9E-08 58.1 2.1 38 20-57 70-124 (644)
312 cd03222 ABC_RNaseL_inhibitor T 96.1 0.014 3E-07 45.8 5.4 15 43-57 31-46 (177)
313 PRK13539 cytochrome c biogenes 96.1 0.029 6.2E-07 44.4 7.3 47 69-123 146-192 (207)
314 cd03246 ABCC_Protease_Secretio 96.0 0.019 4.1E-07 44.2 5.9 15 43-57 34-49 (173)
315 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.02 4.3E-07 46.0 6.1 53 69-125 109-161 (213)
316 COG3854 SpoIIIAA ncharacterize 96.0 0.013 2.8E-07 48.8 5.0 14 44-57 144-158 (308)
317 cd03228 ABCC_MRP_Like The MRP 96.0 0.015 3.2E-07 44.7 5.2 45 69-122 115-159 (171)
318 PRK08233 hypothetical protein; 96.0 0.004 8.7E-08 47.6 1.9 88 44-142 10-109 (182)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.0099 2.1E-07 44.7 4.0 15 43-57 32-47 (144)
320 COG4178 ABC-type uncharacteriz 95.9 0.012 2.5E-07 54.4 5.1 37 21-57 391-440 (604)
321 cd03214 ABC_Iron-Siderophores_ 95.9 0.02 4.4E-07 44.3 5.7 46 69-121 116-161 (180)
322 cd03247 ABCC_cytochrome_bd The 95.9 0.014 3.1E-07 45.0 4.8 15 43-57 34-49 (178)
323 PF13521 AAA_28: AAA domain; P 95.9 0.0043 9.3E-08 47.1 1.8 15 43-57 5-20 (163)
324 PRK06762 hypothetical protein; 95.9 0.0046 9.9E-08 47.0 1.9 15 43-57 8-23 (166)
325 PRK13947 shikimate kinase; Pro 95.9 0.005 1.1E-07 46.9 2.1 20 43-62 7-28 (171)
326 PRK11607 potG putrescine trans 95.9 0.0085 1.9E-07 52.3 3.8 15 43-57 51-66 (377)
327 COG1126 GlnQ ABC-type polar am 95.9 0.023 4.9E-07 46.6 5.9 39 69-115 155-193 (240)
328 PRK00131 aroK shikimate kinase 95.9 0.0047 1E-07 46.6 1.9 15 43-57 10-25 (175)
329 PF13245 AAA_19: Part of AAA d 95.9 0.0053 1.1E-07 41.7 1.9 15 43-57 16-32 (76)
330 PRK13540 cytochrome c biogenes 95.9 0.031 6.6E-07 44.0 6.6 48 69-124 146-193 (200)
331 COG1102 Cmk Cytidylate kinase 95.9 0.0046 1E-07 48.5 1.8 21 44-64 7-29 (179)
332 PRK11823 DNA repair protein Ra 95.8 0.021 4.5E-07 51.0 6.1 15 43-57 86-101 (446)
333 cd01393 recA_like RecA is a b 95.8 0.016 3.5E-07 46.0 5.0 45 69-115 115-166 (226)
334 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.014 3E-07 44.0 4.3 47 69-123 99-145 (157)
335 COG5271 MDN1 AAA ATPase contai 95.8 0.018 3.8E-07 59.1 5.9 83 44-135 1550-1686(4600)
336 PRK09376 rho transcription ter 95.8 0.022 4.7E-07 50.5 5.9 15 43-57 175-190 (416)
337 cd03230 ABC_DR_subfamily_A Thi 95.8 0.027 5.9E-07 43.3 5.9 45 69-121 114-158 (173)
338 COG4175 ProV ABC-type proline/ 95.8 0.02 4.4E-07 49.5 5.6 64 69-142 183-251 (386)
339 cd01131 PilT Pilus retraction 95.8 0.033 7.1E-07 44.1 6.5 15 43-57 7-22 (198)
340 PRK13657 cyclic beta-1,2-gluca 95.8 0.013 2.8E-07 53.5 4.6 54 69-138 490-543 (588)
341 PRK14532 adenylate kinase; Pro 95.8 0.0062 1.4E-07 47.3 2.2 20 43-62 6-27 (188)
342 TIGR02868 CydC thiol reductant 95.8 0.017 3.8E-07 51.9 5.3 15 43-57 367-382 (529)
343 PRK09354 recA recombinase A; P 95.8 0.022 4.7E-07 49.5 5.7 15 43-57 66-81 (349)
344 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0056 1.2E-07 47.0 1.9 15 43-57 9-24 (188)
345 PF14516 AAA_35: AAA-like doma 95.8 0.18 3.8E-06 43.2 11.3 15 69-83 128-142 (331)
346 cd02021 GntK Gluconate kinase 95.7 0.0059 1.3E-07 45.6 1.9 15 43-57 5-20 (150)
347 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0059 1.3E-07 47.0 1.9 21 43-63 5-27 (183)
348 COG1855 ATPase (PilT family) [ 95.7 0.0094 2E-07 53.6 3.3 34 24-57 245-284 (604)
349 TIGR01846 type_I_sec_HlyB type 95.7 0.014 3E-07 54.5 4.6 54 69-138 612-665 (694)
350 COG1117 PstB ABC-type phosphat 95.7 0.028 6E-07 46.2 5.7 15 43-57 39-54 (253)
351 COG4088 Predicted nucleotide k 95.7 0.0094 2E-07 48.7 2.9 39 44-82 8-53 (261)
352 cd00984 DnaB_C DnaB helicase C 95.7 0.029 6.2E-07 45.0 5.8 45 69-115 124-170 (242)
353 cd03231 ABC_CcmA_heme_exporter 95.6 0.036 7.9E-07 43.6 6.2 50 69-126 144-193 (201)
354 PRK00625 shikimate kinase; Pro 95.6 0.0066 1.4E-07 47.5 1.9 15 43-57 6-21 (173)
355 COG2401 ABC-type ATPase fused 95.6 0.015 3.2E-07 52.0 4.3 53 69-130 526-578 (593)
356 cd02020 CMPK Cytidine monophos 95.6 0.0069 1.5E-07 44.5 1.9 20 43-62 5-26 (147)
357 PRK11174 cysteine/glutathione 95.6 0.013 2.9E-07 53.3 4.1 55 69-139 504-558 (588)
358 PF08433 KTI12: Chromatin asso 95.6 0.027 5.8E-07 47.2 5.6 15 43-57 7-22 (270)
359 PRK11176 lipid transporter ATP 95.6 0.018 4E-07 52.3 5.0 55 69-139 499-553 (582)
360 TIGR01313 therm_gnt_kin carboh 95.6 0.007 1.5E-07 45.8 1.9 15 43-57 4-19 (163)
361 PRK11545 gntK gluconate kinase 95.6 0.0071 1.5E-07 46.5 1.9 14 44-57 2-16 (163)
362 PF06745 KaiC: KaiC; InterPro 95.6 0.035 7.5E-07 44.4 5.9 15 43-57 25-40 (226)
363 PRK10790 putative multidrug tr 95.6 0.019 4.1E-07 52.4 4.8 15 43-57 373-388 (592)
364 PRK11650 ugpC glycerol-3-phosp 95.5 0.029 6.4E-07 48.6 5.7 15 43-57 36-51 (356)
365 PF13479 AAA_24: AAA domain 95.5 0.0082 1.8E-07 48.1 2.1 16 42-57 8-24 (213)
366 cd00464 SK Shikimate kinase (S 95.5 0.008 1.7E-07 44.6 1.9 19 43-61 5-25 (154)
367 PRK13538 cytochrome c biogenes 95.5 0.04 8.6E-07 43.4 5.9 47 69-123 148-194 (204)
368 cd00227 CPT Chloramphenicol (C 95.5 0.0083 1.8E-07 46.3 1.9 15 43-57 8-23 (175)
369 PRK12608 transcription termina 95.5 0.03 6.5E-07 49.2 5.5 15 43-57 139-154 (380)
370 COG3283 TyrR Transcriptional r 95.4 0.032 7E-07 49.1 5.6 107 14-126 192-354 (511)
371 PRK13889 conjugal transfer rel 95.4 0.031 6.7E-07 54.5 6.0 30 28-57 345-383 (988)
372 PRK04040 adenylate kinase; Pro 95.4 0.0085 1.8E-07 47.4 1.8 15 43-57 8-23 (188)
373 TIGR02857 CydD thiol reductant 95.4 0.023 4.9E-07 51.1 4.8 15 43-57 354-369 (529)
374 PRK06851 hypothetical protein; 95.4 0.03 6.6E-07 48.9 5.3 39 97-139 72-110 (367)
375 PF13191 AAA_16: AAA ATPase do 95.4 0.016 3.5E-07 44.0 3.3 15 43-57 30-45 (185)
376 TIGR03797 NHPM_micro_ABC2 NHPM 95.4 0.019 4.1E-07 53.4 4.3 15 43-57 485-500 (686)
377 cd02027 APSK Adenosine 5'-phos 95.4 0.0095 2.1E-07 45.1 1.9 15 43-57 5-20 (149)
378 TIGR03574 selen_PSTK L-seryl-t 95.4 0.009 1.9E-07 48.7 1.9 15 43-57 5-20 (249)
379 PRK09452 potA putrescine/sperm 95.3 0.033 7.2E-07 48.6 5.5 15 43-57 46-61 (375)
380 TIGR02688 conserved hypothetic 95.3 0.064 1.4E-06 47.9 7.3 55 43-99 215-289 (449)
381 PHA00012 I assembly protein 95.3 0.021 4.6E-07 49.4 4.0 55 69-126 82-136 (361)
382 PRK13949 shikimate kinase; Pro 95.3 0.012 2.5E-07 45.7 2.2 20 43-62 7-28 (169)
383 TIGR02768 TraA_Ti Ti-type conj 95.3 0.036 7.7E-07 52.6 5.7 30 28-57 351-389 (744)
384 TIGR03375 type_I_sec_LssB type 95.2 0.019 4.2E-07 53.4 3.9 54 69-138 620-673 (694)
385 PF00406 ADK: Adenylate kinase 95.2 0.011 2.4E-07 44.4 1.8 19 43-61 2-22 (151)
386 cd01428 ADK Adenylate kinase ( 95.2 0.011 2.5E-07 45.6 1.9 15 43-57 5-20 (194)
387 PRK11432 fbpC ferric transport 95.2 0.042 9E-07 47.6 5.5 15 43-57 38-53 (351)
388 PRK00889 adenylylsulfate kinas 95.2 0.012 2.6E-07 45.2 1.9 14 44-57 11-25 (175)
389 TIGR03265 PhnT2 putative 2-ami 95.2 0.043 9.3E-07 47.5 5.5 15 43-57 36-51 (353)
390 PRK14530 adenylate kinase; Pro 95.1 0.012 2.6E-07 47.0 1.9 19 43-61 9-29 (215)
391 PRK05541 adenylylsulfate kinas 95.1 0.012 2.6E-07 45.2 1.9 15 43-57 13-28 (176)
392 PRK13826 Dtr system oriT relax 95.1 0.05 1.1E-06 53.6 6.4 30 28-57 380-418 (1102)
393 PRK04841 transcriptional regul 95.1 0.31 6.6E-06 46.3 11.5 40 18-57 6-53 (903)
394 cd00544 CobU Adenosylcobinamid 95.1 0.06 1.3E-06 41.9 5.7 15 43-57 5-20 (169)
395 PHA02530 pseT polynucleotide k 95.1 0.012 2.6E-07 48.9 1.9 15 43-57 8-23 (300)
396 PRK02496 adk adenylate kinase; 95.1 0.013 2.8E-07 45.4 1.9 15 43-57 7-22 (184)
397 PRK09519 recA DNA recombinatio 95.1 0.042 9.1E-07 52.4 5.6 47 69-118 139-196 (790)
398 PRK13946 shikimate kinase; Pro 95.1 0.015 3.3E-07 45.3 2.3 22 43-64 16-39 (184)
399 COG0563 Adk Adenylate kinase a 95.0 0.013 2.9E-07 46.0 1.9 23 43-65 6-30 (178)
400 COG1122 CbiO ABC-type cobalt t 95.0 0.043 9.4E-07 45.0 5.0 15 43-57 36-51 (235)
401 COG3265 GntK Gluconate kinase 95.0 0.052 1.1E-06 42.0 5.0 21 44-64 2-24 (161)
402 PRK06547 hypothetical protein; 95.0 0.014 3E-07 45.6 1.9 15 43-57 21-36 (172)
403 PRK14531 adenylate kinase; Pro 95.0 0.014 3E-07 45.5 1.9 15 43-57 8-23 (183)
404 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.043 9.4E-07 43.9 4.8 15 43-57 35-50 (204)
405 KOG0057 Mitochondrial Fe/S clu 95.0 0.025 5.4E-07 51.7 3.7 38 20-57 349-399 (591)
406 cd02024 NRK1 Nicotinamide ribo 95.0 0.014 3E-07 46.3 1.9 14 44-57 6-20 (187)
407 PF08423 Rad51: Rad51; InterP 95.0 0.034 7.3E-07 46.1 4.2 53 69-123 134-193 (256)
408 PRK10789 putative multidrug tr 94.9 0.032 6.9E-07 50.9 4.3 15 43-57 347-362 (569)
409 cd02023 UMPK Uridine monophosp 94.9 0.015 3.2E-07 45.5 1.9 14 44-57 6-20 (198)
410 TIGR03796 NHPM_micro_ABC1 NHPM 94.9 0.03 6.5E-07 52.3 4.1 15 43-57 511-526 (710)
411 TIGR02203 MsbA_lipidA lipid A 94.9 0.03 6.4E-07 50.7 4.0 15 43-57 364-379 (571)
412 PRK05480 uridine/cytidine kina 94.9 0.015 3.3E-07 45.9 1.9 15 43-57 12-27 (209)
413 TIGR01193 bacteriocin_ABC ABC- 94.9 0.034 7.3E-07 52.0 4.4 15 43-57 506-521 (708)
414 TIGR02322 phosphon_PhnN phosph 94.9 0.016 3.5E-07 44.5 1.9 15 43-57 7-22 (179)
415 KOG2680 DNA helicase TIP49, TB 94.9 0.026 5.6E-07 48.7 3.3 14 44-57 73-87 (454)
416 cd03243 ABC_MutS_homologs The 94.9 0.037 8E-07 43.7 4.0 15 43-57 35-50 (202)
417 PRK04182 cytidylate kinase; Pr 94.9 0.016 3.5E-07 44.0 1.9 19 43-61 6-26 (180)
418 PF00485 PRK: Phosphoribulokin 94.9 0.015 3.3E-07 45.6 1.8 14 44-57 6-20 (194)
419 KOG2227 Pre-initiation complex 94.9 0.021 4.5E-07 51.4 2.8 52 69-127 257-308 (529)
420 TIGR02533 type_II_gspE general 94.8 0.068 1.5E-06 48.3 6.1 37 21-57 217-263 (486)
421 COG4148 ModC ABC-type molybdat 94.8 0.018 4E-07 49.0 2.3 15 43-57 30-45 (352)
422 PRK03731 aroL shikimate kinase 94.8 0.017 3.7E-07 44.0 1.9 15 43-57 8-23 (171)
423 TIGR02314 ABC_MetN D-methionin 94.8 0.049 1.1E-06 47.0 4.8 46 69-121 159-204 (343)
424 PRK05800 cobU adenosylcobinami 94.8 0.071 1.5E-06 41.5 5.3 15 43-57 7-22 (170)
425 PRK06696 uridine kinase; Valid 94.8 0.017 3.7E-07 46.4 1.9 14 44-57 29-43 (223)
426 COG1119 ModF ABC-type molybden 94.8 0.12 2.6E-06 43.0 6.8 53 69-127 190-242 (257)
427 TIGR01192 chvA glucan exporter 94.7 0.035 7.6E-07 50.9 4.0 54 69-138 490-543 (585)
428 cd02028 UMPK_like Uridine mono 94.7 0.019 4.1E-07 44.9 1.9 14 44-57 6-20 (179)
429 PHA02624 large T antigen; Prov 94.7 0.026 5.5E-07 52.4 3.0 94 43-140 437-562 (647)
430 PF08303 tRNA_lig_kinase: tRNA 94.7 0.019 4.2E-07 44.9 1.8 14 44-57 6-20 (168)
431 PRK12339 2-phosphoglycerate ki 94.6 0.02 4.3E-07 45.7 1.9 19 43-61 9-29 (197)
432 PF08477 Miro: Miro-like prote 94.6 0.023 4.9E-07 40.2 2.0 15 43-57 5-20 (119)
433 PRK13975 thymidylate kinase; P 94.6 0.021 4.6E-07 44.4 1.9 14 44-57 9-23 (196)
434 TIGR00235 udk uridine kinase. 94.5 0.022 4.7E-07 45.2 1.9 15 43-57 12-27 (207)
435 PRK10536 hypothetical protein; 94.5 0.021 4.6E-07 47.7 1.9 15 43-57 80-95 (262)
436 TIGR01420 pilT_fam pilus retra 94.5 0.068 1.5E-06 46.0 5.0 38 20-57 100-143 (343)
437 PRK11160 cysteine/glutathione 94.5 0.051 1.1E-06 49.7 4.5 54 69-138 494-547 (574)
438 PRK13948 shikimate kinase; Pro 94.5 0.026 5.6E-07 44.5 2.2 19 43-61 16-36 (182)
439 PRK14527 adenylate kinase; Pro 94.5 0.023 5E-07 44.4 1.9 15 43-57 12-27 (191)
440 PLN02200 adenylate kinase fami 94.5 0.022 4.8E-07 46.5 1.9 20 43-62 49-70 (234)
441 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.11 2.4E-06 41.4 5.9 15 43-57 22-37 (224)
442 COG4988 CydD ABC-type transpor 94.4 0.062 1.3E-06 49.3 4.8 15 43-57 353-368 (559)
443 COG2884 FtsE Predicted ATPase 94.4 0.066 1.4E-06 43.3 4.4 48 69-124 156-203 (223)
444 COG0396 sufC Cysteine desulfur 94.4 0.14 3E-06 42.4 6.4 15 43-57 36-51 (251)
445 PTZ00088 adenylate kinase 1; P 94.4 0.026 5.5E-07 46.1 2.1 21 43-63 12-34 (229)
446 COG0703 AroK Shikimate kinase 94.4 0.025 5.4E-07 44.5 1.9 22 43-64 8-31 (172)
447 PRK14528 adenylate kinase; Pro 94.4 0.025 5.4E-07 44.3 1.9 15 43-57 7-22 (186)
448 TIGR00150 HI0065_YjeE ATPase, 94.4 0.026 5.6E-07 42.5 1.9 34 43-77 28-63 (133)
449 TIGR01613 primase_Cterm phage/ 94.3 0.12 2.7E-06 43.4 6.2 15 43-57 82-97 (304)
450 TIGR02204 MsbA_rel ABC transpo 94.3 0.047 1E-06 49.5 3.9 15 43-57 372-387 (576)
451 TIGR00376 DNA helicase, putati 94.3 0.03 6.5E-07 52.2 2.7 30 28-57 156-194 (637)
452 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.14 3.1E-06 39.6 6.1 42 69-117 96-137 (159)
453 TIGR01351 adk adenylate kinase 94.3 0.026 5.6E-07 44.8 1.9 15 43-57 5-20 (210)
454 PRK08099 bifunctional DNA-bind 94.3 0.027 5.9E-07 49.7 2.1 15 43-57 225-240 (399)
455 PTZ00301 uridine kinase; Provi 94.3 0.027 5.8E-07 45.4 1.9 14 44-57 10-24 (210)
456 TIGR00416 sms DNA repair prote 94.2 0.11 2.5E-06 46.5 6.1 15 43-57 100-115 (454)
457 PRK07667 uridine kinase; Provi 94.2 0.028 6E-07 44.3 1.9 14 44-57 24-38 (193)
458 cd03287 ABC_MSH3_euk MutS3 hom 94.2 0.13 2.8E-06 41.8 5.8 15 43-57 37-52 (222)
459 PRK09302 circadian clock prote 94.2 0.2 4.3E-06 45.2 7.5 15 43-57 37-52 (509)
460 COG1131 CcmA ABC-type multidru 94.1 0.1 2.2E-06 44.0 5.3 48 69-123 155-202 (293)
461 PRK10078 ribose 1,5-bisphospho 94.1 0.03 6.4E-07 43.6 1.9 15 43-57 8-23 (186)
462 TIGR01842 type_I_sec_PrtD type 94.1 0.065 1.4E-06 48.5 4.3 15 43-57 350-365 (544)
463 TIGR02173 cyt_kin_arch cytidyl 94.1 0.031 6.7E-07 42.2 1.9 19 43-61 6-26 (171)
464 PRK00279 adk adenylate kinase; 94.1 0.03 6.5E-07 44.6 1.9 15 43-57 6-21 (215)
465 PF02702 KdpD: Osmosensitive K 94.1 0.043 9.4E-07 44.3 2.8 47 69-125 84-135 (211)
466 cd02025 PanK Pantothenate kina 94.0 0.031 6.8E-07 45.1 1.9 14 44-57 6-20 (220)
467 PRK14526 adenylate kinase; Pro 94.0 0.033 7.1E-07 44.9 1.9 15 43-57 6-21 (211)
468 PRK09825 idnK D-gluconate kina 94.0 0.033 7.2E-07 43.4 1.9 15 43-57 9-24 (176)
469 COG1127 Ttg2A ABC-type transpo 93.9 0.14 2.9E-06 42.7 5.4 15 43-57 40-55 (263)
470 PRK09361 radB DNA repair and r 93.9 0.036 7.7E-07 44.3 1.9 15 43-57 29-44 (225)
471 PRK03846 adenylylsulfate kinas 93.9 0.036 7.8E-07 43.6 1.9 14 44-57 31-45 (198)
472 COG1118 CysA ABC-type sulfate/ 93.8 0.046 1E-06 47.0 2.6 15 43-57 34-49 (345)
473 PRK05057 aroK shikimate kinase 93.8 0.036 7.9E-07 42.9 1.9 15 43-57 10-25 (172)
474 COG1136 SalX ABC-type antimicr 93.8 0.12 2.6E-06 42.4 5.0 15 43-57 37-52 (226)
475 PRK12338 hypothetical protein; 93.8 0.035 7.5E-07 47.7 1.9 22 43-64 10-33 (319)
476 cd02022 DPCK Dephospho-coenzym 93.8 0.043 9.4E-07 42.5 2.2 19 43-61 5-24 (179)
477 TIGR00041 DTMP_kinase thymidyl 93.8 0.038 8.3E-07 42.8 1.9 14 44-57 10-24 (195)
478 COG4525 TauB ABC-type taurine 93.8 0.059 1.3E-06 43.9 3.0 44 12-57 8-52 (259)
479 COG4170 SapD ABC-type antimicr 93.7 0.11 2.4E-06 42.9 4.6 14 44-57 40-54 (330)
480 PRK13536 nodulation factor exp 93.7 0.091 2E-06 45.2 4.3 46 69-122 191-236 (340)
481 cd03115 SRP The signal recogni 93.7 0.041 8.9E-07 42.0 1.9 15 43-57 6-21 (173)
482 COG2909 MalT ATP-dependent tra 93.6 0.93 2E-05 43.7 11.0 47 11-57 4-58 (894)
483 COG5265 ATM1 ABC-type transpor 93.6 0.091 2E-06 47.0 4.2 35 23-57 263-310 (497)
484 TIGR03263 guanyl_kin guanylate 93.6 0.042 9.2E-07 42.0 1.9 15 43-57 7-22 (180)
485 COG0237 CoaE Dephospho-CoA kin 93.6 0.048 1E-06 43.8 2.2 24 44-67 9-33 (201)
486 cd01673 dNK Deoxyribonucleosid 93.5 0.044 9.6E-07 42.6 1.9 14 44-57 6-20 (193)
487 cd01672 TMPK Thymidine monopho 93.5 0.044 9.6E-07 42.0 1.9 14 44-57 7-21 (200)
488 PRK00300 gmk guanylate kinase; 93.5 0.045 9.7E-07 42.9 1.9 15 43-57 11-26 (205)
489 TIGR00455 apsK adenylylsulfate 93.5 0.046 9.9E-07 42.3 1.9 15 43-57 24-39 (184)
490 cd00882 Ras_like_GTPase Ras-li 93.5 0.047 1E-06 38.4 1.8 15 43-57 2-17 (157)
491 TIGR03878 thermo_KaiC_2 KaiC d 93.5 0.044 9.6E-07 45.2 1.9 15 43-57 42-57 (259)
492 cd03286 ABC_MSH6_euk MutS6 hom 93.4 0.16 3.4E-06 41.2 5.0 15 43-57 36-51 (218)
493 PF01443 Viral_helicase1: Vira 93.4 0.046 1E-06 43.3 1.9 15 43-57 4-19 (234)
494 PRK08154 anaerobic benzoate ca 93.4 0.057 1.2E-06 45.8 2.5 18 44-61 140-159 (309)
495 PF01926 MMR_HSR1: 50S ribosom 93.4 0.049 1.1E-06 38.7 1.8 16 43-58 5-21 (116)
496 TIGR02538 type_IV_pilB type IV 93.4 0.092 2E-06 48.2 3.9 35 23-57 293-337 (564)
497 cd01123 Rad51_DMC1_radA Rad51_ 93.4 0.049 1.1E-06 43.5 1.9 15 43-57 25-40 (235)
498 PRK15453 phosphoribulokinase; 93.3 0.049 1.1E-06 46.2 1.9 14 44-57 12-26 (290)
499 PF09848 DUF2075: Uncharacteri 93.3 0.046 1E-06 47.0 1.8 15 43-57 7-22 (352)
500 TIGR02655 circ_KaiC circadian 93.3 0.26 5.5E-06 44.4 6.6 15 43-57 27-42 (484)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-42 Score=298.82 Aligned_cols=169 Identities=49% Similarity=0.770 Sum_probs=153.1
Q ss_pred eeeecCCC------CCCCcccCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHH
Q 036857 2 MLHMINNN------RPSYWNSNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSS 51 (170)
Q Consensus 2 ~~~~~~~~------~~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~ 51 (170)
+||++++. .++.|+++++.||++|+++++++++|++|..++ || ||||||+
T Consensus 171 kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS 250 (457)
T KOG0743|consen 171 KLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSS 250 (457)
T ss_pred HHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHH
Confidence 57777752 578999999999999999999999999999999 59 9999999
Q ss_pred HHHHHH--------ccccccccccC-----------ceeEeeechhhhcc--CC----------ccchHHHHHHHHHhhc
Q 036857 52 LIAAMA--------DLDLKEFQSNS-----------RSILVIEDAVTSFE--SN----------AYNSVALSALLKFVDG 100 (170)
Q Consensus 52 la~aiA--------~~~l~~v~~~~-----------p~il~iDEiD~~~~--~~----------~~~~~~~~~ll~~lDg 100 (170)
++.|+| +++|..+..++ .+||+|+|||+-+. .+ ..+..++|.|||++||
T Consensus 251 ~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG 330 (457)
T KOG0743|consen 251 FIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG 330 (457)
T ss_pred HHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence 999999 67788887776 89999999999986 11 1244789999999999
Q ss_pred hhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc---------------chHHHHHHHHHhhcCCCCHHHHH
Q 036857 101 LWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF---------------RHYLFEKIEERLAKIQATPAEVP 165 (170)
Q Consensus 101 ~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~---------------~~~l~~~~~~~~~~~~~s~a~i~ 165 (170)
+|++|++++++|+|||++|.|||||+||||+|+||+|+++++ .|.++++++.++.+..+|||+++
T Consensus 331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHH
Confidence 999999999999999999999999999999999999999999 37899999999899999999999
Q ss_pred HhhhC
Q 036857 166 GELMK 170 (170)
Q Consensus 166 ~~l~~ 170 (170)
+.|++
T Consensus 411 e~lm~ 415 (457)
T KOG0743|consen 411 EELMK 415 (457)
T ss_pred HHHhh
Confidence 99975
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-35 Score=248.75 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=121.5
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc-----
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF----- 64 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v----- 64 (170)
+.-.+..++++|.+.+++.+++.+.+ || ||||||++|||+| +..+-.+
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34556668999999999999998877 89 9999999999999 2222111
Q ss_pred -------------------cccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 65 -------------------QSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 65 -------------------~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
..++||||||||||+++.. ..+-++++-+||++|||+.. .+++-||||||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR 299 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNR 299 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCC
Confidence 2233999999999999982 23557899999999999987 589999999999
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
++.|||||+||||||++|+||+|+. +.+++.. ++.++... .+|+|+|.+++
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHH
Confidence 9999999999999999999999999 5555542 44444433 69999998865
No 3
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=245.99 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=123.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-----------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA----------------- 57 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA----------------- 57 (170)
+..+...|++|++-+++|..+...+ || ||||||.+|||+|
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 4578889999999999999999888 89 9999999999999
Q ss_pred ------ccccccccccC----ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 58 ------DLDLKEFQSNS----RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 58 ------~~~l~~v~~~~----p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
+-++.+|+..+ ||||||||+|+++++++ ...|.+|+||.+|||+......+++||+|||+|+.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 23444555544 99999999999999543 34689999999999998655789999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCcchH---HHHH------------HHHHhhcC--CCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTFRHY---LFEK------------IEERLAKI--QATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~~~~---l~~~------------~~~~~~~~--~~s~a~i~~~l 168 (170)
|||||+||||||..++++.++..+. ++++ +.+++.++ ++|+|++.+++
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 9999999999999999999988222 2222 33344433 48888887654
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=241.39 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=122.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------ 64 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------ 64 (170)
-..++.+|+++++.+++|+++...+ || ||||||++|||+| ..++-.|
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 3457789999999999999998777 79 9999999999999 3444333
Q ss_pred --------------cccC----ceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 65 --------------QSNS----RSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 65 --------------~~~~----p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
+..+ ||||||||||++...+ +.+.+++++||++|||+.. ..+|+||+|||+|+.|
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMI 583 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--cCcEEEEeccCChhhc
Confidence 2222 9999999999999855 3457899999999999987 4799999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l 168 (170)
|+|++||||||..|++++||. +.++++. +.+++.. ..+|+|||.+++
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHH
Confidence 999999999999999999999 5555543 4444443 359999998764
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-31 Score=234.32 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=117.2
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccccc------
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQSN------ 67 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~~~------ 67 (170)
+-.+|++|....++|.+|.-.+ || ||||||++|||+| ++++..|+.-
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 3457999999999998887666 79 9999999999999 5555544431
Q ss_pred ------------------CceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 68 ------------------SRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 68 ------------------~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
+||||||||+|++++.+ +.+.+.+++||.+|||+.. ..+|+||+|||+|+.||||
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchh
Confidence 29999999999999833 3557899999999999977 4799999999999999999
Q ss_pred CCCCCccceEEEcCCCCc--chHHHHH--------------HHHHhh---cCCCCHHHHHHhh
Q 036857 125 PLRPSCMDMHFHLSSHTF--RHYLFEK--------------IEERLA---KIQATPAEVPGEL 168 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~--~~~l~~~--------------~~~~~~---~~~~s~a~i~~~l 168 (170)
++||||||..+++++|+. +..++.. +.+++. -..+|+|++..+.
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 999999999999999999 3333332 233332 2368999987653
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-30 Score=226.05 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=115.4
Q ss_pred CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccc------------
Q 036857 22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKE------------ 63 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~------------ 63 (170)
+.+|++|-+.++.|++|.+.+ -| ||||||+||||+| ++++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 456999999999999998877 29 9999999999999 222211
Q ss_pred --------c----cccCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857 64 --------F----QSNSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 64 --------v----~~~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All 126 (170)
+ +..+||||||||||++.+.+. ..+.++++||.+|||+.. +++++||+|||+|+.||+||+
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHhc
Confidence 1 112399999999999998332 456789999999999986 689999999999999999999
Q ss_pred CCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 127 RPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 127 RpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
||||||++|.++.||. +.+++.. ...+.+.. .|++||++++.
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999999999999999 5555543 11122222 58888887653
No 7
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=211.46 Aligned_cols=151 Identities=21% Similarity=0.266 Sum_probs=120.0
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cc--------c
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DL--------D 60 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~--------~ 60 (170)
+++..+-.++.++.+.+.+-+++.+.+ || ||||||.||+|+| .. +
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 456667778999999988888887777 79 9999999999999 11 1
Q ss_pred ---------------cccc-cccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 61 ---------------LKEF-QSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 61 ---------------l~~v-~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+..+ ..++|+|+|+||||++... ..+.++++-+|||++||+.+ ..++-||+|||
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATn 332 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATN 332 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecc
Confidence 1111 1234999999999999871 23557888899999999987 58999999999
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc--chHHH----------HH--HHHHh-hcCCCCHHHHHHhh
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLF----------EK--IEERL-AKIQATPAEVPGEL 168 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~----------~~--~~~~~-~~~~~s~a~i~~~l 168 (170)
+++.|||||+||||+|++|+|+.||. ..++| ++ ++.++ .+.++|+|+|.+++
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAic 399 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAIC 399 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHH
Confidence 99999999999999999999999999 22232 11 44444 45679999998875
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=206.53 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=115.1
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL----------- 61 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l----------- 61 (170)
++-.++.++.+.+-+|+++.+.+ || |||||||+|+|+| ...+
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 33447999999999999998877 79 9999999999999 1111
Q ss_pred -------------ccccccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 62 -------------KEFQSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 62 -------------~~v~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
.-...++|+||||||+|+++.. ..+-++.+-+||++|||+.. ..++-||++||+.+.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnradt 306 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRADT 306 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcccc
Confidence 1123355999999999999871 23456788899999999987 579999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCcchH--HHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTFRHY--LFEK------------IEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~~~~--l~~~------------~~~~~~-~~~~s~a~i~~~l 168 (170)
||||++||||+|++|+|++||.+++ .|.. ++..+. ...+|+|+|.+++
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aic 369 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAIC 369 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHH
Confidence 9999999999999999999999332 2222 333332 3458888887654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=213.81 Aligned_cols=133 Identities=22% Similarity=0.250 Sum_probs=107.9
Q ss_pred CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccc------------
Q 036857 22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKE------------ 63 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~------------ 63 (170)
..+|.++.+......+|...+ || ||||||++|+||| ++++..
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 346999999888888777666 69 9999999999999 232222
Q ss_pred --------ccc----cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccC--CCCeEEEEeCCCCCCCCCC
Q 036857 64 --------FQS----NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSS--GDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 64 --------v~~----~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~--~~~~~vi~tTN~~~~lD~A 124 (170)
++. ++|||+||||||++.+.+ +..++.+++||+.||++.... +..|+||+|||+|+.||||
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 222 229999999999999844 455788999999999996531 3679999999999999999
Q ss_pred CCCCCccceEEEcCCCCc--chHHHHHHHHHh
Q 036857 125 PLRPSCMDMHFHLSSHTF--RHYLFEKIEERL 154 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~--~~~l~~~~~~~~ 154 (170)
|.|+||||..|.++.|+. +.+++..+++.+
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 999999999999999999 777777665544
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-27 Score=217.15 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=120.8
Q ss_pred cccCCCCCCC--CcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cc-----
Q 036857 14 WNSNKFEHPA--TSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DL----- 59 (170)
Q Consensus 14 w~~~~~~~p~--~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~----- 59 (170)
.+.+.+..+. .|+++.+..++|+.+.+.+ || ||||||.+|.|+| .+
T Consensus 653 LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv 732 (952)
T KOG0735|consen 653 LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV 732 (952)
T ss_pred hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence 3444444444 5899999999998887766 79 9999999999999 22
Q ss_pred ---------------ccccccccC----ceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 60 ---------------DLKEFQSNS----RSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 60 ---------------~l~~v~~~~----p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
++..++..+ |||+||||+|++++.++ ...++++++|.+|||... -.+|.|+++|
T Consensus 733 KGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaT 810 (952)
T KOG0735|consen 733 KGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--LDGVYILAAT 810 (952)
T ss_pred cCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--cceEEEEEec
Confidence 233333332 99999999999999443 457899999999999976 5799999999
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHHHH------------HHhh-cCCCCHHHHHHhh
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEKIE------------ERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~~~------------~~~~-~~~~s~a~i~~~l 168 (170)
.+|+.|||||+||||+|..++.+.|++ +.++++.+. -+.. ...+|+|+++.+|
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 999999999999999999999999999 444444322 2222 3369999999887
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-27 Score=217.06 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=116.5
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc--------
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS-------- 66 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~-------- 66 (170)
...+|++|++.++.|++|.+.+ .| ||||||+||||+| .+++..+..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 3468999999999999999888 39 9999999999999 333322221
Q ss_pred ----------------cCceeEeeechhhhccCC---------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 67 ----------------NSRSILVIEDAVTSFESN---------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 67 ----------------~~p~il~iDEiD~~~~~~---------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
++|||+|+||||.+...+ ++...+++++|.+|||... ..+|+++++||+++.|
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRPDIL 463 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCcccc
Confidence 239999999999998744 2335689999999999986 4789999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHHH-------------HHHHhh-cCCCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK-------------IEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~-------------~~~~~~-~~~~s~a~i~~~l 168 (170)
|+|++||||||++|+++.|+. +..+++. +.++.. ...+++|+|+.++
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 999999999999999999999 4444432 223222 3368999988754
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-28 Score=198.54 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=96.0
Q ss_pred CCCCCCCcccccCChhhHHHhhcCccc-CCCcHHHHHHHHH---ccccccccc------------------------cCc
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDYWG-PYTGKSSLIAAMA---DLDLKEFQS------------------------NSR 69 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~~G-PGtGKT~la~aiA---~~~l~~v~~------------------------~~p 69 (170)
+..||..|+.+.+.+...- ++ || ||||||.+|||+| ++-+..+.. .+|
T Consensus 166 PvKHPELF~aLGIaQPKGv-lL---ygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehap 241 (404)
T KOG0728|consen 166 PVKHPELFEALGIAQPKGV-LL---YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP 241 (404)
T ss_pred cccCHHHHHhcCCCCCcce-EE---ecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 5677777777766554333 22 79 9999999999999 333322222 229
Q ss_pred eeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857 70 SILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 70 ~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~ 141 (170)
+|||+||||++.+. .++-++++-++||++||+.. .+++-||++||+++.+|||++||||+|++|+||.|+
T Consensus 242 siifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 242 SIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred ceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 99999999999982 23457889999999999987 589999999999999999999999999999999999
Q ss_pred c
Q 036857 142 F 142 (170)
Q Consensus 142 ~ 142 (170)
.
T Consensus 320 e 320 (404)
T KOG0728|consen 320 E 320 (404)
T ss_pred H
Confidence 9
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-27 Score=202.71 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=114.2
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc-----cC-
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS-----NS- 68 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~-----~~- 68 (170)
+...|++|.+..+.|+.|.+.+ +| ||||||+||||+| ..-+.+|.+ ++
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 4457999999999999888877 39 9999999999999 222222222 11
Q ss_pred ------------------ceeEeeechhhhccC------CccchHHHHHHHHHhhchhccCCCC---eEEEEeCCCCCCC
Q 036857 69 ------------------RSILVIEDAVTSFES------NAYNSVALSALLKFVDGLWSSSGDG---RILVMTTDYKDHI 121 (170)
Q Consensus 69 ------------------p~il~iDEiD~~~~~------~~~~~~~~~~ll~~lDg~~~~~~~~---~~vi~tTN~~~~l 121 (170)
|++|||||||++++. ++.+++..++||.+|||+... .++ |+|+++||.|+.|
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t-~e~~k~VmVLAATN~PWdi 365 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT-LENSKVVMVLAATNFPWDI 365 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc-cccceeEEEEeccCCCcch
Confidence 999999999999983 456788999999999999875 445 8999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
|.||+| ||+.+|++++|+. +..+++. +..+..+. .+|+++|..++
T Consensus 366 DEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 366 DEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred HHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 999999 9999999999999 4445442 23333333 58888887654
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.7e-27 Score=193.88 Aligned_cols=148 Identities=20% Similarity=0.222 Sum_probs=113.2
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH-----------cccccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA-----------DLDLKE 63 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA-----------~~~l~~ 63 (170)
-++-.++.++.+.+.+-++|++.+ || ||||||++|||-| +-.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 344456888888888888887766 79 9999999999999 111111
Q ss_pred ----------------ccccCceeEeeechhhhccC--------CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 64 ----------------FQSNSRSILVIEDAVTSFES--------NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 64 ----------------v~~~~p~il~iDEiD~~~~~--------~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
.+.++|+||||||+|.+... ..+-++++-+|||++||+.+ .+.+-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence 12233999999999999872 23457889999999999976 68899999999999
Q ss_pred CCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 120 HIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
.||||++|.||+|++|+||.|+. +..+++. ++++.+.. +|++|+..+.+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 99999999999999999999999 3333331 44444433 47777765543
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-25 Score=185.76 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=99.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccc-------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKE------- 63 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~------- 63 (170)
+-.+-.++.++.+..++-+++.+.+ || ||||||..|||+| +.-+..
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 3445557788888877777776655 79 9999999999999 111111
Q ss_pred -----------------ccccCceeEeeechhhhcc--------CCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 64 -----------------FQSNSRSILVIEDAVTSFE--------SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 64 -----------------v~~~~p~il~iDEiD~~~~--------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
...+..|||||||||.+.+ ...+-++++-++++++||+.. ..++-|+++||+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrp 326 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRP 326 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCC
Confidence 1112299999999999987 223557889999999999987 4789999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.|||||+||||+|++++|++||-
T Consensus 327 dtldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcc
Confidence 999999999999999999999998
No 16
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-25 Score=201.28 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=114.8
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccccc-------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQS------- 66 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~~------- 66 (170)
....+|+++++.++.|+++.+.+ .| ||||||++|||+| ++++..+..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 34568999999999999998877 39 9999999999999 333322222
Q ss_pred -----------------cCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 67 -----------------NSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
++|||+||||||++..+++ +...+++++|.+|||... +++++++++||+++-+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVl 301 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVL 301 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccc
Confidence 2299999999999987442 224589999999999975 5799999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHH------------HHHHHhhcC-CCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFE------------KIEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~------------~~~~~~~~~-~~s~a~i~~~l 168 (170)
||||+||||||+.|.++.||. ++.+.. .+..+.... .+++|++..++
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 999999999999999999997 433333 133333333 47888777665
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=192.56 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=113.7
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------ 64 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------ 64 (170)
.-.+..+|++|++.+.+|+++...+ || ||||||++|+++| ...+..+
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 3455668999999999999887765 69 9999999999999 1111111
Q ss_pred ------------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 65 ------------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 65 ------------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
....|+||||||+|.++..+ ...++.+.++++.+|++.. ..++++|+|||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~ 294 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRA 294 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCc
Confidence 11239999999999998632 1234678889999999865 4689999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l 168 (170)
+.||||++||||||.+|+|++|+. +..++.. +..++. ...+|+++|..++
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~ 359 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAIC 359 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999 4445443 222332 2368999988764
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=2.2e-25 Score=183.98 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=113.1
Q ss_pred CCCCCCcccccCChhhHHHh---hcCc----------------cc-CCCcHHHHHHHHH---ccccccccccC-------
Q 036857 19 FEHPATSNTIATDFDMNKAL---VDDY----------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS------- 68 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l---~~~~----------------~G-PGtGKT~la~aiA---~~~l~~v~~~~------- 68 (170)
.....+|++|+++++.|++- +..+ || ||||||++|||+| ...+..++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 34556899999999998763 3333 69 9999999999999 33433333321
Q ss_pred -----------------ceeEeeechhhhccCC------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 69 -----------------RSILVIEDAVTSFESN------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 -----------------p~il~iDEiD~~~~~~------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
|||+||||+|+++-++ +.-+..+++||..|||+.+ +.+++.|++||+++.||||+
T Consensus 194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHHH
Confidence 9999999999998743 4456789999999999996 78999999999999999999
Q ss_pred CCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhhhC
Q 036857 126 LRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGELMK 170 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l~~ 170 (170)
.. ||...|+|.+|+. +.++++. ++.+.. ...+|+.+|.+-.+|
T Consensus 272 Rs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 272 RS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred Hh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 85 9999999999999 3333332 223333 235888888776553
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=9.9e-25 Score=202.51 Aligned_cols=146 Identities=20% Similarity=0.268 Sum_probs=112.8
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccc--------
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ-------- 65 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~-------- 65 (170)
+..+|+++++.+.+|++|...+ || ||||||++|+++| ..++..+.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 3457999999999998876643 69 9999999999999 22222211
Q ss_pred ----------------ccCceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 66 ----------------SNSRSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 66 ----------------~~~p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
...||||||||+|++++.++ ...+.+++||..|||+.. ..+++||+|||+++.||+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDP 605 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCH
Confidence 11299999999999987432 235788999999999876 578999999999999999
Q ss_pred CCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 124 VPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
|++||||||.+|++++|+. +..++.. +..++... .+|+++|..++
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999 4444421 33333333 58999987654
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=193.08 Aligned_cols=145 Identities=23% Similarity=0.335 Sum_probs=111.7
Q ss_pred CCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----ccccc--
Q 036857 22 PATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EFQSN-- 67 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v~~~-- 67 (170)
..+|+++++....|+.+...+ || ||||||++|+|+| +..+. .+.+.
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 447888888888888877666 69 9999999999999 22221 22121
Q ss_pred -----------------CceeEeeechhhhccCCccc-----hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 68 -----------------SRSILVIEDAVTSFESNAYN-----SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 68 -----------------~p~il~iDEiD~~~~~~~~~-----~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
+||||||||+|++++.++.+ .+.++++|.+|||+.. ..+|+||+|||+++.+|+|+
T Consensus 318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhh
Confidence 19999999999999854432 4899999999999987 57899999999999999999
Q ss_pred CCCCccceEEEcCCCCc--chHHHH--------------HHHHHhh-cCCCCHHHHHHhh
Q 036857 126 LRPSCMDMHFHLSSHTF--RHYLFE--------------KIEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~--~~~l~~--------------~~~~~~~-~~~~s~a~i~~~l 168 (170)
+||||||.+|+++.||. +..++. .++.+.. ...+++++|..++
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999 222222 1222322 2348888887765
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=1.9e-24 Score=192.72 Aligned_cols=143 Identities=21% Similarity=0.218 Sum_probs=106.1
Q ss_pred CCCcccccCChhhHHHhhcCc--------------------cc-CCCcHHHHHHHHH---cccc-----ccccc------
Q 036857 22 PATSNTIATDFDMNKALVDDY--------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS------ 66 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~--------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~------ 66 (170)
..+|++|++.+.+|+.+.... || ||||||++|+++| +..+ ..+..
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes 303 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES 303 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence 447999999999997765411 79 9999999999999 2222 22111
Q ss_pred -------------cCceeEeeechhhhccCC------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857 67 -------------NSRSILVIEDAVTSFESN------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR 127 (170)
Q Consensus 67 -------------~~p~il~iDEiD~~~~~~------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR 127 (170)
.+||||||||+|.++... +...+.++++++.|+.. ..+++||+|||+++.||+|++|
T Consensus 304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 304 ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhC
Confidence 129999999999998621 23345677777777753 4689999999999999999999
Q ss_pred CCccceEEEcCCCCc--chHHHHH--------------HHHHhhc-CCCCHHHHHHhh
Q 036857 128 PSCMDMHFHLSSHTF--RHYLFEK--------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 128 pgR~d~~i~~~~p~~--~~~l~~~--------------~~~~~~~-~~~s~a~i~~~l 168 (170)
|||||.+|+++.|+. +..++.. +..++.. ..+|+|||...+
T Consensus 380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 999999999999998 4444432 2223322 368999988754
No 22
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.8e-25 Score=183.25 Aligned_cols=122 Identities=24% Similarity=0.308 Sum_probs=100.1
Q ss_pred CCCCC--CcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccccccC-
Q 036857 19 FEHPA--TSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS- 68 (170)
Q Consensus 19 ~~~p~--~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~~~~- 68 (170)
...|+ +|+.+.+.-++-.++.+.+ || ||||||++|+++| +.++-.+...+
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 34455 7888888777776666555 89 9999999999999 44433322221
Q ss_pred -----------------------ceeEeeechhhhcc--------CCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 69 -----------------------RSILVIEDAVTSFE--------SNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 69 -----------------------p~il~iDEiD~~~~--------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
|||||+||||++.+ ++...++++-+|+++|||... ...|-+|+|||+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNr 280 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNR 280 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCC
Confidence 99999999999998 234557788889999999987 578999999999
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.|||||+||||+|++++.|+|+.
T Consensus 281 pdtLdpaLlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 281 PDTLDPALLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred ccccchhhcCCccccceeccCCcch
Confidence 9999999999999999999999998
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=3e-24 Score=191.51 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=110.8
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccc---------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEF--------- 64 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v--------- 64 (170)
.+..+|+++++.+++|+++...+ || ||||||++|+++| ...+..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 44568999999999998776433 69 9999999999999 2222111
Q ss_pred ---------------cccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 65 ---------------QSNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 65 ---------------~~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
...+||||||||+|.++..+. .....+++||+.||++.. ..+++||+|||+++.|
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRPDVL 206 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCChhhc
Confidence 112399999999999986332 234678899999999865 4689999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
|+|++||||||.+|++++|+. +.+++.. +..+.... .+|+++|..++
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999998 3333332 22222222 47888877654
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=1.9e-24 Score=193.23 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=98.6
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH-ccc------------c
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA-DLD------------L 61 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA-~~~------------l 61 (170)
..++.+|+++++.+.+++++...+ || ||||||++|+++| .+. +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 345678999999999888877654 69 9999999999999 221 1
Q ss_pred cccc--------------------c--------cCceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccCCC
Q 036857 62 KEFQ--------------------S--------NSRSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSSGD 107 (170)
Q Consensus 62 ~~v~--------------------~--------~~p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~~~ 107 (170)
..+. . ..||||||||+|+++..++ ...+.+++||+.|||+.. ..
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--CC
Confidence 0110 0 1289999999999987432 224567899999999975 46
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 108 GRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 108 ~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+++||+|||+++.||||++||||||.+|+|++|+.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 89999999999999999999999999999999999
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.90 E-value=7.2e-24 Score=186.77 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=112.9
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccccccc----
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ---- 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v~---- 65 (170)
+...++.+|+++.+.+.+++++...+ || ||||||++|+++| ...+..+.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 45566679999999999988876654 69 9999999999999 11111110
Q ss_pred --------------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 66 --------------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 66 --------------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
...||||||||+|.++..+. ..++.+.++++.+|++.. ..++.||+|||+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr 331 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNR 331 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCC
Confidence 12299999999999986321 224567889999999865 468999999999
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l 168 (170)
++.+|+|++||||||++|+|+.|+. +..++.. +..++. ...+|+|+|..++
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999998 3344432 233332 3358888887764
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=2.7e-23 Score=180.70 Aligned_cols=147 Identities=21% Similarity=0.233 Sum_probs=109.3
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc--------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF-------- 64 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v-------- 64 (170)
.+..+|+++++.+.+++++...+ || ||||||++|+++| ...+..+
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 34557999999999998887644 69 9999999999999 1111111
Q ss_pred ----------------cccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 65 ----------------QSNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 65 ----------------~~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
....|+||||||+|.++..+. ..++.+.++++.+|+... ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 012289999999999986321 234567788888998865 468999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhh-cCCCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~-~~~~s~a~i~~~l 168 (170)
+|+|++||||||.+|+++.|+. +..++.. +..++. ...+++++|..++
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAIC 345 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999 3333332 222222 2357888887764
No 27
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.9e-24 Score=188.80 Aligned_cols=144 Identities=18% Similarity=0.272 Sum_probs=110.9
Q ss_pred CCcccccCChhhHHHhhcC-c-----cc-CCCcHHHHHHHHH------------------------ccccccccccC---
Q 036857 23 ATSNTIATDFDMNKALVDD-Y-----WG-PYTGKSSLIAAMA------------------------DLDLKEFQSNS--- 68 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~-~-----~G-PGtGKT~la~aiA------------------------~~~l~~v~~~~--- 68 (170)
+.|.+-+.+|++-+++--. + || ||||||.+||.|. +-++..++.++
T Consensus 236 RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 236 RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHH
Confidence 3477777888877776321 1 89 9999999999999 22334444433
Q ss_pred ---------ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857 69 ---------RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132 (170)
Q Consensus 69 ---------p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d 132 (170)
-.||+|||||++|.+++ ....++++||..|||+.. -++++||..||+.+.||.||+|||||+
T Consensus 316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGMTNR~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGMTNRKDLIDEALLRPGRLE 393 (744)
T ss_pred HHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEEEeccCchhhHHHHhcCCCceE
Confidence 67999999999998443 345789999999999987 589999999999999999999999999
Q ss_pred eEEEcCCCCc--c-------------hHHHH---HHHHHhh-cCCCCHHHHHHhh
Q 036857 133 MHFHLSSHTF--R-------------HYLFE---KIEERLA-KIQATPAEVPGEL 168 (170)
Q Consensus 133 ~~i~~~~p~~--~-------------~~l~~---~~~~~~~-~~~~s~a~i~~~l 168 (170)
.++++++||+ + +..+. +++++.. ..++|+|||..+.
T Consensus 394 VqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 394 VQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred EEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 9999999999 1 11111 2555554 3479999998764
No 28
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=3.2e-23 Score=178.47 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred cc-CCCcHHHHHHHHH-ccc----------------------cccccc---------cCceeEeeechhhhccCCcc---
Q 036857 43 WG-PYTGKSSLIAAMA-DLD----------------------LKEFQS---------NSRSILVIEDAVTSFESNAY--- 86 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~----------------------l~~v~~---------~~p~il~iDEiD~~~~~~~~--- 86 (170)
|| ||||||++|+++| +++ +..++. .+||||||||||++++.++.
T Consensus 154 ~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~ 233 (413)
T PLN00020 154 WGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQY 233 (413)
T ss_pred eCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCc
Confidence 89 9999999999999 111 111111 12999999999999985432
Q ss_pred ---chHHHHHHHHHhhch--------h--ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHHHH
Q 036857 87 ---NSVALSALLKFVDGL--------W--SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEKIE 151 (170)
Q Consensus 87 ---~~~~~~~ll~~lDg~--------~--~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~~~ 151 (170)
.+....+|++.+|+. + ......++||+|||+++.|||||+||||||..+. .|+. +.++ ++
T Consensus 234 tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~--lPd~e~R~eI---L~ 308 (413)
T PLN00020 234 TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV---VH 308 (413)
T ss_pred chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeC--CCCHHHHHHH---HH
Confidence 223347889998863 2 1124679999999999999999999999999764 6776 3333 33
Q ss_pred HHhhcCCCCHHHHHH
Q 036857 152 ERLAKIQATPAEVPG 166 (170)
Q Consensus 152 ~~~~~~~~s~a~i~~ 166 (170)
..+.+.+++..++..
T Consensus 309 ~~~r~~~l~~~dv~~ 323 (413)
T PLN00020 309 GIFRDDGVSREDVVK 323 (413)
T ss_pred HHhccCCCCHHHHHH
Confidence 444455666665554
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-23 Score=175.38 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=100.8
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc--ccccccc-------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL--DLKEFQS------- 66 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~--~l~~v~~------- 66 (170)
.++..|++|++.++.|+.|.+.+ || ||||||.||+|+| +. .+.+|.+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 45568999999999999998887 69 9999999999999 22 2222211
Q ss_pred -----------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 67 -----------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
+.|+||||||||++++.+ +.+++...+||.+|.|+-.. .++++|+++||-|+.||.|
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHH
Confidence 119999999999999833 34567888999999999764 5689999999999999999
Q ss_pred CCCCCccceEEEcCCCCc
Q 036857 125 PLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~ 142 (170)
++| ||+.+|++|+|+.
T Consensus 286 IRR--RFekRIYIPLPe~ 301 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEA 301 (439)
T ss_pred HHH--HhhcceeccCCcH
Confidence 999 9999999999998
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.88 E-value=1.3e-22 Score=185.70 Aligned_cols=146 Identities=23% Similarity=0.265 Sum_probs=110.5
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccccc----------
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEF---------- 64 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v---------- 64 (170)
...+|+++++.++.|+++...+ || ||||||++|+++| +..+..+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 3468999999999998876654 69 9999999999999 2211111
Q ss_pred --------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 65 --------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 65 --------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
...+||||||||+|.++..+ ......++++|+.||+... ..+++||+|||+++.+|
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHhhh
Confidence 11239999999999997532 2334678899999999865 56899999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 123 PVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
+|++||||||.+|+++.|+. +..++.. +..+.... .+++++|..++
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999998 3333322 22233332 47888887654
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.87 E-value=1.5e-22 Score=197.87 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=76.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chH
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHY 145 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~ 145 (170)
||||||||||+++... ....++++|++.|||... ....+++||||||+|+.|||||+||||||++|+++.|+. +.+
T Consensus 1733 PCIIFIDEIDaL~~~d-s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNE-SNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CeEEEEEchhhcCCCc-cceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 9999999999998752 223458999999998742 124689999999999999999999999999999999987 333
Q ss_pred HHHH---------------HHHHhhc-CCCCHHHHHHhh
Q 036857 146 LFEK---------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 146 l~~~---------------~~~~~~~-~~~s~a~i~~~l 168 (170)
.+.. +..++.. .++|+||++.++
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 2221 2333333 368999988764
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.86 E-value=1e-21 Score=180.27 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=107.9
Q ss_pred CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc----------
Q 036857 22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ---------- 65 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~---------- 65 (170)
...|+++.+....++++...+ +| ||||||++|+++| ...+..+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 346888888877776654433 69 9999999999999 22211111
Q ss_pred --------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 66 --------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 66 --------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
...||||||||+|.++..++ .....++++|..|||... ..++++|+|||+++.||+
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDP 305 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhcCH
Confidence 11299999999999986332 234578999999999975 578999999999999999
Q ss_pred CCCCCCccceEEEcCCCCc--chHHHHHH------------HHHhhc-CCCCHHHHHHhh
Q 036857 124 VPLRPSCMDMHFHLSSHTF--RHYLFEKI------------EERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~--~~~l~~~~------------~~~~~~-~~~s~a~i~~~l 168 (170)
|++||||||++|++++|+. +..++... ..+... ..+|+|+|..++
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~ 365 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 365 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHH
Confidence 9999999999999999998 44444322 122222 358888888765
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=3e-21 Score=166.09 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=108.9
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF------ 64 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v------ 64 (170)
...+..+++++.+.+.+++++...+ || ||||||++|+++| ...+..+
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 3455668999999999998886644 79 9999999999999 1111111
Q ss_pred ------------------cccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 65 ------------------QSNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 65 ------------------~~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
....|+||||||+|.++..+ ...++.+.++++.+|+... ..++.+|+|||++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 11128999999999997632 1234567788888998754 4689999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l 168 (170)
+.+|+|++||||||..|+++.|+. +..++.. +..+... ..+++++|..++
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~ 336 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAIC 336 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999998 3333332 2222222 247777777654
No 34
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-21 Score=166.02 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=111.8
Q ss_pred CCcccccCChhhHHHhhcCc------------------------cc-CCCcHHHHHHHHH--------ccccccccccC-
Q 036857 23 ATSNTIATDFDMNKALVDDY------------------------WG-PYTGKSSLIAAMA--------DLDLKEFQSNS- 68 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------------------~G-PGtGKT~la~aiA--------~~~l~~v~~~~- 68 (170)
.+|+++.+.+.+++++.+.+ || ||||||++|+|+| .+.++.+.+++
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 46999999999999888777 69 9999999999999 33444433332
Q ss_pred ------------------ceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 69 ------------------RSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 ------------------p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
||||||||+|+++..++ .....-++|...=||+.+.....++|++|||+|..+|.|+
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi 248 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI 248 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHH
Confidence 99999999999998443 2234566677778999886445699999999999999999
Q ss_pred CCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 126 LRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
+| |+-..++++.|+. +.+++.. +.++.... .+|+.+|.+++
T Consensus 249 iR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC 304 (386)
T KOG0737|consen 249 IR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC 304 (386)
T ss_pred HH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH
Confidence 99 9999999999999 4444432 44444434 58888887654
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.6e-21 Score=182.23 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=102.7
Q ss_pred cccCCCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH--------cccc
Q 036857 14 WNSNKFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA--------DLDL 61 (170)
Q Consensus 14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA--------~~~l 61 (170)
-.+.+......|++|++..+...++.+.+ +| ||||||++|||+| .+.+
T Consensus 253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf 332 (1080)
T KOG0732|consen 253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF 332 (1080)
T ss_pred cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch
Confidence 34556667778999998888888877666 49 9999999999999 1111
Q ss_pred ---------c-cc--------------cccCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEE
Q 036857 62 ---------K-EF--------------QSNSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILV 112 (170)
Q Consensus 62 ---------~-~v--------------~~~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi 112 (170)
+ +| +...|+|+|+||||-+++-+ ......++.||..|||+.+ ...|+||
T Consensus 333 fmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds--RgqVvvi 410 (1080)
T KOG0732|consen 333 FMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS--RGQVVVI 410 (1080)
T ss_pred hhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--CCceEEE
Confidence 1 11 11119999999999988833 2334678999999999987 4799999
Q ss_pred EeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 113 MTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 113 ~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|||+++.+|||++||||||+.++|++|+.
T Consensus 411 gATnRpda~dpaLRRPgrfdref~f~lp~~ 440 (1080)
T KOG0732|consen 411 GATNRPDAIDPALRRPGRFDREFYFPLPDV 440 (1080)
T ss_pred cccCCccccchhhcCCcccceeEeeeCCch
Confidence 999999999999999999999999999988
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=158.33 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccccC-
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQSNS- 68 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~~~- 68 (170)
.+..|+++.+....|+.+.+.+ || ||||||++++||| . +.-+++..++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 3467888888888888877766 69 9999999999999 1 1111122211
Q ss_pred ------------------ceeEeeechhhhccC-----CccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 69 ------------------RSILVIEDAVTSFES-----NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 ------------------p~il~iDEiD~~~~~-----~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
|+|+|+||+|+++.. +..+.+...++|.+.|+......+.++||+|||+|+.+|.|+
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 999999999999983 345568899999999999988777899999999999999999
Q ss_pred CCCCccceEEEcCCCCc
Q 036857 126 LRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~ 142 (170)
+| ||-..+++++|+.
T Consensus 308 ~R--rf~kr~yiplPd~ 322 (428)
T KOG0740|consen 308 RR--RFVKRLYIPLPDY 322 (428)
T ss_pred HH--HhhceeeecCCCH
Confidence 99 9999999999999
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=2.6e-19 Score=166.43 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=96.9
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc---------
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF--------- 64 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v--------- 64 (170)
+..+|+++++...+++++.+.+ || ||||||++|+++| ...+..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 4468999999999988876543 69 9999999999999 1111111
Q ss_pred -----------c----ccCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 65 -----------Q----SNSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 65 -----------~----~~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
+ .+.|+||||||+|.++..++ ...+.+++|++.||++.. ...+++|+|||+++.+|+|
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~a 330 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDPA 330 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCHH
Confidence 1 11289999999999987432 235678899999999965 4678999999999999999
Q ss_pred CCCCCccceEEEcCCCCc
Q 036857 125 PLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~ 142 (170)
+.|+||||..++++.|+.
T Consensus 331 l~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 331 LRRPGRFDREIVIRVPDK 348 (733)
T ss_pred HhCchhccEEEEeCCcCH
Confidence 999999999999999998
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.7e-19 Score=159.11 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=81.2
Q ss_pred cc-CCCcHHHHHHHHH---c-----cc---------------ccccc----ccC-ceeEeeechhhhccCCc----cchH
Q 036857 43 WG-PYTGKSSLIAAMA---D-----LD---------------LKEFQ----SNS-RSILVIEDAVTSFESNA----YNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~-----~~---------------l~~v~----~~~-p~il~iDEiD~~~~~~~----~~~~ 89 (170)
|| ||||||++++++| . ++ +..++ ..+ |+++|+||+|++++.+. ..++
T Consensus 224 ~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~R 303 (693)
T KOG0730|consen 224 YGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESR 303 (693)
T ss_pred cCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHH
Confidence 79 9999999999999 1 11 11111 122 99999999999998332 3678
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..++++..|||+.. ..+++|++|||+++.||+|+.| ||||..++++.|+.
T Consensus 304 v~sqlltL~dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 304 VVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGS 353 (693)
T ss_pred HHHHHHHHHhhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCc
Confidence 99999999999975 4799999999999999999999 99999999999997
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=7.5e-19 Score=128.23 Aligned_cols=95 Identities=31% Similarity=0.466 Sum_probs=74.9
Q ss_pred cc-CCCcHHHHHHHHH--------cccccccc-------------------ccC-ceeEeeechhhhccCC-----ccch
Q 036857 43 WG-PYTGKSSLIAAMA--------DLDLKEFQ-------------------SNS-RSILVIEDAVTSFESN-----AYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA--------~~~l~~v~-------------------~~~-p~il~iDEiD~~~~~~-----~~~~ 88 (170)
+| ||||||++|+++| .++...+. ... |+||||||+|.++... ....
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~ 83 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQ 83 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHH
T ss_pred ECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccccc
Confidence 69 9999999999999 11111111 122 7999999999999743 2345
Q ss_pred HHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857 89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~ 139 (170)
..++.+++.++..... +.++++|+|||.++.+|++++| +||+.+|++++
T Consensus 84 ~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 84 RLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 6788899999998753 3579999999999999999999 99999999874
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.1e-17 Score=139.98 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=95.7
Q ss_pred CcccccCChhhHHHhhcCc------------------------cc-CCCcHHHHHHHHH-----------------cccc
Q 036857 24 TSNTIATDFDMNKALVDDY------------------------WG-PYTGKSSLIAAMA-----------------DLDL 61 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~------------------------~G-PGtGKT~la~aiA-----------------~~~l 61 (170)
.|++++-.-++|+++...+ +| ||||||+++||+| +++-
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 4888999999999998876 49 9999999999999 2333
Q ss_pred ccccccC------------------------ceeEeeechhhhcc---------CCccchHHHHHHHHHhhchhccCCCC
Q 036857 62 KEFQSNS------------------------RSILVIEDAVTSFE---------SNAYNSVALSALLKFVDGLWSSSGDG 108 (170)
Q Consensus 62 ~~v~~~~------------------------p~il~iDEiD~~~~---------~~~~~~~~~~~ll~~lDg~~~~~~~~ 108 (170)
..+++++ -..++|||+++++. +.+..-|+++++|.+||.+... .+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~--~N 297 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY--PN 297 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC--CC
Confidence 3333332 34677899999987 2234568999999999999873 79
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+++++|+|-.+.||.|+. +|-|.+.++++|+.
T Consensus 298 vliL~TSNl~~siD~AfV--DRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFV--DRADIVFYVGPPTA 329 (423)
T ss_pred EEEEeccchHHHHHHHhh--hHhhheeecCCccH
Confidence 999999999999999999 59999999999999
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.6e-16 Score=134.88 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=87.3
Q ss_pred CCCCCcccccCChhhHHHhhcCc------------------cc-CCCcHHHHHHHHH---ccccccccccC---------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY------------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS--------- 68 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~------------------~G-PGtGKT~la~aiA---~~~l~~v~~~~--------- 68 (170)
....+|+.|+++|.++.+|.... || ||||||++||-|| +++...+....
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH
Confidence 34456999999999999887655 79 9999999999999 44433322211
Q ss_pred ---------------ceeEeeechhhhccCCc--c----chHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857 69 ---------------RSILVIEDAVTSFESNA--Y----NSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR 127 (170)
Q Consensus 69 ---------------p~il~iDEiD~~~~~~~--~----~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR 127 (170)
.-+|||||.|.++-.+. . .+..++.||=- -|-. ..+++++.+||+|+++|.|+-
T Consensus 429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-TGdq---SrdivLvlAtNrpgdlDsAV~- 503 (630)
T KOG0742|consen 429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQ---SRDIVLVLATNRPGDLDSAVN- 503 (630)
T ss_pred HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-hccc---ccceEEEeccCCccchhHHHH-
Confidence 77999999999987332 2 22333333311 1222 357899999999999999998
Q ss_pred CCccceEEEcCCCCc
Q 036857 128 PSCMDMHFHLSSHTF 142 (170)
Q Consensus 128 pgR~d~~i~~~~p~~ 142 (170)
+|||..|+|++|..
T Consensus 504 -DRide~veFpLPGe 517 (630)
T KOG0742|consen 504 -DRIDEVVEFPLPGE 517 (630)
T ss_pred -hhhhheeecCCCCh
Confidence 69999999999998
No 42
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=5.9e-15 Score=121.16 Aligned_cols=148 Identities=22% Similarity=0.316 Sum_probs=112.7
Q ss_pred CCCcccCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH------cccccccccc--
Q 036857 11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA------DLDLKEFQSN-- 67 (170)
Q Consensus 11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA------~~~l~~v~~~-- 67 (170)
.+.+.+|...++..++++++.+.+|+.|...+ || +|||||+++||+. ++.+..|..+
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 57788999999999999999999999998887 89 9999999999999 2322222221
Q ss_pred --------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC-CC----
Q 036857 68 --------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL-RP---- 128 (170)
Q Consensus 68 --------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All-Rp---- 128 (170)
.+-|||+||+ .|. ........|...|||..+..++++++.+|+|+.+.++.-+. |.
T Consensus 92 ~~l~~l~~~l~~~~~kFIlf~DDL--sFe---~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~ 166 (249)
T PF05673_consen 92 GDLPELLDLLRDRPYKFILFCDDL--SFE---EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQD 166 (249)
T ss_pred ccHHHHHHHHhcCCCCEEEEecCC--CCC---CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCc
Confidence 1889999987 344 33445688888999998888999999999999988876553 22
Q ss_pred ----------------CccceEEEcCCCCcchHHHHHHHHHhh--cCCCCHHHH
Q 036857 129 ----------------SCMDMHFHLSSHTFRHYLFEKIEERLA--KIQATPAEV 164 (170)
Q Consensus 129 ----------------gR~d~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a~i 164 (170)
.||...|.|..|++.+.+ +.+...+. +..++++++
T Consensus 167 ~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL-~IV~~~~~~~g~~~~~e~l 219 (249)
T PF05673_consen 167 DEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYL-AIVRHYAERYGLELDEEEL 219 (249)
T ss_pred cccCcchHHHHHHhHHHhCCcEEEecCCCHHHHH-HHHHHHHHHcCCCCCHHHH
Confidence 489999999999996554 33444443 334555444
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.52 E-value=6.5e-14 Score=115.49 Aligned_cols=112 Identities=14% Similarity=0.251 Sum_probs=77.1
Q ss_pred cccccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----cccc------cc-----
Q 036857 25 SNTIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLDL------KE----- 63 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~l------~~----- 63 (170)
++++++.+.+|+++...+ || ||||||++|+++| ..+. ..
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 567788888887775433 69 9999999999998 1111 00
Q ss_pred ---------------cc-ccCceeEeeechhhhccCCc--cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----C
Q 036857 64 ---------------FQ-SNSRSILVIEDAVTSFESNA--YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----H 120 (170)
Q Consensus 64 ---------------v~-~~~p~il~iDEiD~~~~~~~--~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~ 120 (170)
+. ...++||||||+|.+....+ .....+..++..|+.. ..++++|++++..+ .
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~~ 160 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFLS 160 (261)
T ss_pred hhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHHh
Confidence 00 01178999999999874221 2344567777777764 34566666654333 4
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++|++.+ ||+.+|+|+.++.
T Consensus 161 ~~p~L~s--Rf~~~i~f~~~~~ 180 (261)
T TIGR02881 161 LNPGLRS--RFPISIDFPDYTV 180 (261)
T ss_pred cChHHHh--ccceEEEECCCCH
Confidence 7899987 9999999988776
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.48 E-value=1.4e-13 Score=115.56 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=79.5
Q ss_pred cccccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----ccc------ccccc---
Q 036857 25 SNTIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLD------LKEFQ--- 65 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~------l~~v~--- 65 (170)
++++++.+++|+++.+.+ +| ||||||++|+++| ..+ +..+.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 347889988988775543 59 9999999999998 111 11000
Q ss_pred ------------------ccCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----
Q 036857 66 ------------------SNSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD----- 119 (170)
Q Consensus 66 ------------------~~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~----- 119 (170)
...++||||||+|.+...+ .........|+..|+.. ..+++||+|++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence 0117899999999986522 23456677788888754 34677778776322
Q ss_pred CCCCCCCCCCccceEEEcCCCCc
Q 036857 120 HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++|++.| ||+.+|+|+.++.
T Consensus 178 ~~np~L~s--R~~~~i~F~~~t~ 198 (287)
T CHL00181 178 ESNPGLSS--RIANHVDFPDYTP 198 (287)
T ss_pred hcCHHHHH--hCCceEEcCCcCH
Confidence 44699998 9999999999987
No 45
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=111.12 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=106.1
Q ss_pred CCCcccCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH------ccccccccccC-
Q 036857 11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA------DLDLKEFQSNS- 68 (170)
Q Consensus 11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA------~~~l~~v~~~~- 68 (170)
.+++++++..++..+.++++.+.+|+.++... || .|||||+++||+- .+.+.+|.-..
T Consensus 45 ~~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 45 IGYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred cCcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 57888999999999999999999999998887 89 9999999999998 33344433221
Q ss_pred ---------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC-------
Q 036857 69 ---------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL------- 126 (170)
Q Consensus 69 ---------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All------- 126 (170)
+-|||+||+ .|. ........|-..|||-.+..+.+|++.+|+|+.+.|+.-+.
T Consensus 125 ~~Lp~l~~~Lr~~~~kFIlFcDDL--SFe---~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~ 199 (287)
T COG2607 125 ATLPDLVELLRARPEKFILFCDDL--SFE---EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTG 199 (287)
T ss_pred hhHHHHHHHHhcCCceEEEEecCC--CCC---CCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCccc
Confidence 889999998 444 33455777888999999888999999999999998874331
Q ss_pred -------------CCCccceEEEcCCCCcchHH
Q 036857 127 -------------RPSCMDMHFHLSSHTFRHYL 146 (170)
Q Consensus 127 -------------RpgR~d~~i~~~~p~~~~~l 146 (170)
=+.||...+.|..|++.+++
T Consensus 200 eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL 232 (287)
T COG2607 200 EIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYL 232 (287)
T ss_pred ccChhHHHHHhhchhhhcceeecccCCCHHHHH
Confidence 24699999999999996554
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=3.9e-13 Score=112.82 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=86.7
Q ss_pred CcccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-c-------ccccc---------
Q 036857 13 YWNSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-D-------LDLKE--------- 63 (170)
Q Consensus 13 ~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~-------~~l~~--------- 63 (170)
...++....|.+|+++++++.+++.+...+ || ||+|||++|++++ . ++...
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~ 87 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNR 87 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHH
Confidence 555667899999999999999999887655 69 9999999999999 1 11110
Q ss_pred cc--------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEE
Q 036857 64 FQ--------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHF 135 (170)
Q Consensus 64 v~--------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i 135 (170)
+. ...+.+|+|||+|.+.. ......+...++.. +.++.+|+|||.+..+++++.+ |+. .+
T Consensus 88 l~~~~~~~~~~~~~~vliiDe~d~l~~-----~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i 155 (316)
T PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDRLGL-----ADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRS--RCR-VI 155 (316)
T ss_pred HHHHHHhhcccCCCeEEEEECcccccC-----HHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHh--hce-EE
Confidence 10 01278999999997722 11233444445553 3577889999999999999986 774 68
Q ss_pred EcCCCCc
Q 036857 136 HLSSHTF 142 (170)
Q Consensus 136 ~~~~p~~ 142 (170)
.|+.|+.
T Consensus 156 ~~~~p~~ 162 (316)
T PHA02544 156 DFGVPTK 162 (316)
T ss_pred EeCCCCH
Confidence 8888887
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.44 E-value=7.1e-13 Score=107.86 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---cccccccccc-----------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQSN----------- 67 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~~----------- 67 (170)
....|.+|++.+++++++..+.-.+ || ||||||++|+.|| +.++..+...
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i 95 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI 95 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH
Confidence 4678999999999999998764322 89 9999999999999 3333222211
Q ss_pred -----CceeEeeechhhhccCCccchHHHHHHHHHhhchh-----ccCC---------CCeEEEEeCCCCCCCCCCCCCC
Q 036857 68 -----SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-----SSSG---------DGRILVMTTDYKDHIDPVPLRP 128 (170)
Q Consensus 68 -----~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-----~~~~---------~~~~vi~tTN~~~~lD~AllRp 128 (170)
...|||+|||+.+ +......|+..|+... ...+ ....+|.||++...|.+.|+
T Consensus 96 l~~l~~~~ILFIDEIHRl------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr-- 167 (233)
T PF05496_consen 96 LTNLKEGDILFIDEIHRL------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR-- 167 (233)
T ss_dssp HHT--TT-EEEECTCCC--------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC--
T ss_pred HHhcCCCcEEEEechhhc------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH--
Confidence 1889999999877 3344555666665321 1111 13578999999999999998
Q ss_pred CccceEEEcCCCCc
Q 036857 129 SCMDMHFHLSSHTF 142 (170)
Q Consensus 129 gR~d~~i~~~~p~~ 142 (170)
.||.+..++.+-+.
T Consensus 168 dRFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 168 DRFGIVLRLEFYSE 181 (233)
T ss_dssp TTSSEEEE----TH
T ss_pred hhcceecchhcCCH
Confidence 59999888887666
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.44 E-value=6.5e-13 Score=112.84 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=81.5
Q ss_pred CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc-------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS------------- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~------------- 66 (170)
...|.+|+++++.+..++.+...+ || ||||||++|+++| ...+..+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l 97 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAIL 97 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHH
Confidence 567889999999999998774332 79 9999999999999 222211111
Q ss_pred ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-----cc---------CCCCeEEEEeCCCCCCCCCCCCCCC
Q 036857 67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-----SS---------SGDGRILVMTTDYKDHIDPVPLRPS 129 (170)
Q Consensus 67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-----~~---------~~~~~~vi~tTN~~~~lD~AllRpg 129 (170)
..++||||||+|.+... ....+.+.|+... .. ...+..+|+|||++..+++++..
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-- 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPV------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-- 169 (328)
T ss_pred HhcccCCEEEEecHhhcchH------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--
Confidence 12789999999988431 1122333333211 00 01246789999999999999875
Q ss_pred ccceEEEcCCCCc
Q 036857 130 CMDMHFHLSSHTF 142 (170)
Q Consensus 130 R~d~~i~~~~p~~ 142 (170)
||...++++.|+.
T Consensus 170 Rf~~~~~l~~~~~ 182 (328)
T PRK00080 170 RFGIVQRLEFYTV 182 (328)
T ss_pred hcCeeeecCCCCH
Confidence 9999999999888
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.42 E-value=1.2e-12 Score=109.50 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=77.9
Q ss_pred CcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc----------------cC
Q 036857 24 TSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS----------------NS 68 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~----------------~~ 68 (170)
+|+++++.++.++++...+ || ||||||++|+++| ..++..+.. ..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEE 81 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhccc
Confidence 6888999999888765433 79 9999999999999 222222111 12
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhc--------------cCCCCeEEEEeCCCCCCCCCCCCCCCccceE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS--------------SSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~--------------~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~ 134 (170)
+.++||||+|.+... ....|.+.++.... ....+..+|++||++..++++++. ||...
T Consensus 82 ~~vl~iDEi~~l~~~------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~ 153 (305)
T TIGR00635 82 GDVLFIDEIHRLSPA------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGII 153 (305)
T ss_pred CCEEEEehHhhhCHH------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceE
Confidence 789999999988541 12334444432210 001247889999999999999886 99999
Q ss_pred EEcCCCCc
Q 036857 135 FHLSSHTF 142 (170)
Q Consensus 135 i~~~~p~~ 142 (170)
++++.++.
T Consensus 154 ~~l~~l~~ 161 (305)
T TIGR00635 154 LRLEFYTV 161 (305)
T ss_pred EEeCCCCH
Confidence 99998887
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.40 E-value=5.6e-13 Score=125.01 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=78.2
Q ss_pred cccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH---cccccc-----------ccc---------
Q 036857 27 TIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA---DLDLKE-----------FQS--------- 66 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA---~~~l~~-----------v~~--------- 66 (170)
++.+.+++|+.+...+ || ||||||++|+++| ...+.. +..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~ 400 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAM 400 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCC
Confidence 3677888888876533 69 9999999999999 111111 100
Q ss_pred ------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhc-----c------CCCCeEEEEeCCCCCCCCC
Q 036857 67 ------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-----S------SGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 67 ------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-----~------~~~~~~vi~tTN~~~~lD~ 123 (170)
..+.||||||||.+.... .....+.|++.||.... . ...++++|+|||.++.+|+
T Consensus 401 ~g~i~~~l~~~~~~~~villDEidk~~~~~--~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 401 PGRIIQGLKKAKTKNPLFLLDEIDKIGSSF--RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred CchHHHHHHHhCcCCCEEEEechhhcCCcc--CCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 014589999999998632 22345778888874110 0 0146899999999999999
Q ss_pred CCCCCCccceEEEcCCCCc
Q 036857 124 VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~ 142 (170)
++++ ||+ .|+|+.|+.
T Consensus 479 ~L~~--R~~-vi~~~~~~~ 494 (775)
T TIGR00763 479 PLLD--RME-VIELSGYTE 494 (775)
T ss_pred HHhC--Cee-EEecCCCCH
Confidence 9997 996 689998886
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.39 E-value=1.3e-12 Score=109.49 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=78.2
Q ss_pred cccCChhhHHHhhcCc-------------------------cc-CCCcHHHHHHHHH----ccc------ccccc-----
Q 036857 27 TIATDFDMNKALVDDY-------------------------WG-PYTGKSSLIAAMA----DLD------LKEFQ----- 65 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~-------------------------~G-PGtGKT~la~aiA----~~~------l~~v~----- 65 (170)
++++.+++|+++.+.+ +| ||||||++|+++| ..+ +..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 6888888888875532 59 9999999999998 111 11110
Q ss_pred ----c------------cCceeEeeechhhhccC---CccchHHHHHHHHHhhchhccCCCCeEEEEeCCC--CC---CC
Q 036857 66 ----S------------NSRSILVIEDAVTSFES---NAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY--KD---HI 121 (170)
Q Consensus 66 ----~------------~~p~il~iDEiD~~~~~---~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~--~~---~l 121 (170)
. ..+++|||||+|.+... +.......+.|++.|+.- ..++++|+|++. .+ .+
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~~ 178 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFES 178 (284)
T ss_pred HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhh
Confidence 0 11799999999988542 123455677888888754 357788887763 23 35
Q ss_pred CCCCCCCCccceEEEcCCCCc
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++.| ||+..|+|+.++.
T Consensus 179 np~L~s--R~~~~i~fp~l~~ 197 (284)
T TIGR02880 179 NPGFSS--RVAHHVDFPDYSE 197 (284)
T ss_pred CHHHHh--hCCcEEEeCCcCH
Confidence 899998 9999999999885
No 52
>PLN03025 replication factor C subunit; Provisional
Probab=99.38 E-value=2.3e-12 Score=109.16 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=91.9
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc------------cccc------cc
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL------------DLKE------FQ 65 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~------------~l~~------v~ 65 (170)
++...+|.+|+++++++++.+.|...+ || ||||||++|+++| .+ +-+. +.
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr 82 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR 82 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHH
Confidence 456889999999999999988876544 79 9999999999999 11 1111 00
Q ss_pred --------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857 66 --------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM 131 (170)
Q Consensus 66 --------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~ 131 (170)
...+.|++|||+|.+.. ...+.|+..|+.. +....+|++||..+.+.+++.. |+
T Consensus 83 ~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------~aq~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~S--Rc 150 (319)
T PLN03025 83 NKIKMFAQKKVTLPPGRHKIVILDEADSMTS------GAQQALRRTMEIY----SNTTRFALACNTSSKIIEPIQS--RC 150 (319)
T ss_pred HHHHHHHhccccCCCCCeEEEEEechhhcCH------HHHHHHHHHHhcc----cCCceEEEEeCCccccchhHHH--hh
Confidence 01257999999998843 2345566666543 3456678889999999999885 55
Q ss_pred ceEEEcCCCCcchHHHHHHHHHhh--cCCCCHHHHHH
Q 036857 132 DMHFHLSSHTFRHYLFEKIEERLA--KIQATPAEVPG 166 (170)
Q Consensus 132 d~~i~~~~p~~~~~l~~~~~~~~~--~~~~s~a~i~~ 166 (170)
..++|..|+.. .+...+...+. +..++++.+..
T Consensus 151 -~~i~f~~l~~~-~l~~~L~~i~~~egi~i~~~~l~~ 185 (319)
T PLN03025 151 -AIVRFSRLSDQ-EILGRLMKVVEAEKVPYVPEGLEA 185 (319)
T ss_pred -hcccCCCCCHH-HHHHHHHHHHHHcCCCCCHHHHHH
Confidence 47888888762 22233333332 33455555443
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=5.8e-12 Score=112.44 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=83.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
...+|.+|+++++++++++.|...+ || ||||||++|+++| .++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC
Confidence 3678999999999999988876644 79 9999999999999 211
Q ss_pred --ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 61 --LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 61 --l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+..+... ...|+|+||+|.+.. ...+.|+..++.. +..+++|++||
T Consensus 86 ~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------~a~~~LLk~LE~p----~~~vv~Ilatt 155 (472)
T PRK14962 86 MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------EAFNALLKTLEEP----PSHVVFVLATT 155 (472)
T ss_pred CccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------HHHHHHHHHHHhC----CCcEEEEEEeC
Confidence 1111110 046999999998732 3456777777654 34677777777
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+++++.. |+ ..++|..++.
T Consensus 156 n~~kl~~~L~S--R~-~vv~f~~l~~ 178 (472)
T PRK14962 156 NLEKVPPTIIS--RC-QVIEFRNISD 178 (472)
T ss_pred ChHhhhHHHhc--Cc-EEEEECCccH
Confidence 78899999987 55 3788888877
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=6.6e-12 Score=112.03 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=83.7
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-ccc-------ccc---------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DLD-------LKE--------- 63 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~~-------l~~--------- 63 (170)
++....|.+|++++++++.++++...+ || ||||||++|+++| .++ .+.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~ 83 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER 83 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH
Confidence 566889999999999999998886543 79 9999999999999 111 111
Q ss_pred ----------ccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccce
Q 036857 64 ----------FQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM 133 (170)
Q Consensus 64 ----------v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~ 133 (170)
++...+.||+|||+|.+... .....+.++++.++. .+..+|+++|.+..+++.-+| +...
T Consensus 84 ~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~--~d~~~~~aL~~~l~~------~~~~iIli~n~~~~~~~k~Lr--sr~~ 153 (482)
T PRK04195 84 VAGEAATSGSLFGARRKLILLDEVDGIHGN--EDRGGARAILELIKK------AKQPIILTANDPYDPSLRELR--NACL 153 (482)
T ss_pred HHHHhhccCcccCCCCeEEEEecCcccccc--cchhHHHHHHHHHHc------CCCCEEEeccCccccchhhHh--ccce
Confidence 11113679999999998652 223345667666653 244567788988888874344 4456
Q ss_pred EEEcCCCCc
Q 036857 134 HFHLSSHTF 142 (170)
Q Consensus 134 ~i~~~~p~~ 142 (170)
.|+|+.|+.
T Consensus 154 ~I~f~~~~~ 162 (482)
T PRK04195 154 MIEFKRLST 162 (482)
T ss_pred EEEecCCCH
Confidence 799998887
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=5.1e-12 Score=112.66 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=85.9
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc----------------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD---------------------- 60 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~---------------------- 60 (170)
......|.+|+++++++.+.+.|...+ || ||||||++|+++| .++
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g 87 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKG 87 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHcc
Confidence 445789999999999999988776655 69 9999999999999 211
Q ss_pred ----cccccc--c--------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 61 ----LKEFQS--N--------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 61 ----l~~v~~--~--------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+..+.. + ...|+||||+|.+. ....++||..|+.- +..+++|++
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------~~A~NALLKtLEEP----p~~viFILa 157 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------DQSFNALLKTLEEP----PAHIVFILA 157 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------HHHHHHHHHHhhcC----CCceEEEee
Confidence 111111 0 04599999999873 35678888888653 468899999
Q ss_pred CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 115 TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
||.++.|.++++. |+ .++.|..++.
T Consensus 158 Tte~~kI~~TI~S--RC-q~~~f~~ls~ 182 (484)
T PRK14956 158 TTEFHKIPETILS--RC-QDFIFKKVPL 182 (484)
T ss_pred cCChhhccHHHHh--hh-heeeecCCCH
Confidence 9999999999986 66 3567766665
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.32 E-value=4e-12 Score=118.64 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=88.3
Q ss_pred CCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc------
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ------ 65 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~------ 65 (170)
.|..++.+++.++.-+++...+ || ||||||++|+++| . +++..+.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 6677899999888777776644 89 9999999999999 1 1111111
Q ss_pred ---------------ccCceeEeeechhhhccCCc--cc-hHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857 66 ---------------SNSRSILVIEDAVTSFESNA--YN-SVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID 122 (170)
Q Consensus 66 ---------------~~~p~il~iDEiD~~~~~~~--~~-~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD 122 (170)
...++||||||+|.+++.+. .. ....+.|...+. .+.+.+|+|||..+ .+|
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d 330 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKD 330 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhh
Confidence 01189999999999987332 11 122233333332 25788899998633 689
Q ss_pred CCCCCCCccceEEEcCCCCc--chHHHHHHHHHh---hcCCCCHHHHHH
Q 036857 123 PVPLRPSCMDMHFHLSSHTF--RHYLFEKIEERL---AKIQATPAEVPG 166 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~--~~~l~~~~~~~~---~~~~~s~a~i~~ 166 (170)
+|+.| ||. .|+++.|+. ...+++.+.... ....++++.+..
T Consensus 331 ~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~ 376 (731)
T TIGR02639 331 RALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA 376 (731)
T ss_pred HHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence 99999 997 799999998 223333222222 123466666544
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2e-11 Score=113.49 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD----------------------- 60 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~----------------------- 60 (170)
..+.+|.+|+++++++.+++.|.+.+ +| ||||||++|+++| .++
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 34678999999999999999887655 69 9999999999999 221
Q ss_pred ---ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 61 ---LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 61 ---l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+.++... ...|+||||+|.+. ....+.||..|+.- ...+.+|++|
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------~~A~NALLKtLEEP----P~~v~FILaT 156 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------NHAFNAMLKTLEEP----PPHVKFILAT 156 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------HHHHHHHHHHHHhc----CCCeEEEEEE
Confidence 1111110 05699999999873 34577888877664 4588999999
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|.++.|.+.++. |+ .++.|..++.
T Consensus 157 td~~KIp~TIrS--RC-q~f~Fk~Ls~ 180 (830)
T PRK07003 157 TDPQKIPVTVLS--RC-LQFNLKQMPA 180 (830)
T ss_pred CChhhccchhhh--he-EEEecCCcCH
Confidence 999999999885 66 6777877665
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3.1e-11 Score=104.25 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=82.9
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|.+|+++++++.+.+.+...+ +| ||||||++|+++| .+
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4668999999999999998876655 69 9999999999999 21
Q ss_pred -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... ...|++|||+|.+. ....+.++..++.. +..+.+|++|+
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------~~a~naLLk~lEe~----~~~~~fIl~t~ 157 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PQHIKFILATT 157 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------HHHHHHHHHHHhcC----CCCeEEEEEcC
Confidence 11111100 04599999999772 34456788877664 35677788888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+++.. |+ ..++|..++.
T Consensus 158 ~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 158 DVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred ChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 88889988874 65 6788888877
No 59
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.26 E-value=2.2e-11 Score=106.69 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=75.3
Q ss_pred CCCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH---cccccccc--------------
Q 036857 17 NKFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA---DLDLKEFQ-------------- 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA---~~~l~~v~-------------- 65 (170)
....+|.+|++++++++.... +...+ || ||||||++|+++| ...+..+.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIE 82 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHH
Confidence 346789999999999877433 43333 79 9999999999999 11111110
Q ss_pred -------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceEEE
Q 036857 66 -------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMHFH 136 (170)
Q Consensus 66 -------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~i~ 136 (170)
.....||||||+|.+.. .....|+..++. ..+++|++| |....+++++++ |+ ..+.
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~------~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~ 147 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNK------AQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFE 147 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCH------HHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeE
Confidence 01268999999998743 234556666543 245555554 456689999997 66 6788
Q ss_pred cCCCCc
Q 036857 137 LSSHTF 142 (170)
Q Consensus 137 ~~~p~~ 142 (170)
|..++.
T Consensus 148 ~~~ls~ 153 (413)
T PRK13342 148 LKPLSE 153 (413)
T ss_pred eCCCCH
Confidence 888876
No 60
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.26 E-value=1.8e-11 Score=103.23 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=83.0
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------------cccc------c
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------------DLKE------F 64 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------------~l~~------v 64 (170)
+.....|.+|+++++++.+.+.|.+.+ || ||||||+.|+++| .+ +.+. +
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence 456889999999999999988777666 89 9999999999999 11 1110 0
Q ss_pred cc--cC------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 65 QS--NS------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 65 ~~--~~------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
.. +. .-|++|||+|++ .+...++|...||.. ...+.+|+-||+.+.|.+-
T Consensus 106 r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------tsdaq~aLrr~mE~~----s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM------TSDAQAALRRTMEDF----SRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhccccccCCCCCcceEEEEechhhh------hHHHHHHHHHHHhcc----ccceEEEEEcCChhhCChH
Confidence 00 00 379999999987 446678888888884 3578899999999999888
Q ss_pred CCCCCccceEEEcCC
Q 036857 125 PLRPSCMDMHFHLSS 139 (170)
Q Consensus 125 llRpgR~d~~i~~~~ 139 (170)
+.. |. -++.|+.
T Consensus 176 i~S--RC-~KfrFk~ 187 (346)
T KOG0989|consen 176 LVS--RC-QKFRFKK 187 (346)
T ss_pred HHh--hH-HHhcCCC
Confidence 874 54 3445544
No 61
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.9e-12 Score=114.06 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=77.7
Q ss_pred cCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------ccccccccccC---------------
Q 036857 29 ATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------DLDLKEFQSNS--------------- 68 (170)
Q Consensus 29 ~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~~~l~~v~~~~--------------- 68 (170)
-+.+++|+++++.+ .| ||+|||+++++|| ++.+.-+.+.+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence 35567888888776 59 9999999999999 22222222221
Q ss_pred ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCCCCCC
Q 036857 69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~lD~Al 125 (170)
..++++||||.+.. +.....-++||+.||--.... -.+|++|+|+|..+.||.+|
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~s--s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PL 483 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGS--SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPL 483 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccC--CCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHH
Confidence 77899999999987 344556788898887432110 12689999999999999999
Q ss_pred CCCCccceEEEcCCCC
Q 036857 126 LRPSCMDMHFHLSSHT 141 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~ 141 (170)
+ +|++..=--+|-.
T Consensus 484 l--DRMEiI~lsgYt~ 497 (782)
T COG0466 484 L--DRMEVIRLSGYTE 497 (782)
T ss_pred h--cceeeeeecCCCh
Confidence 9 5887644444433
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=1.9e-11 Score=115.85 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=88.2
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------cccccccc----
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQS---- 66 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~~---- 66 (170)
..|..++.+++.++.-.++...+ +| ||||||++|+.+| . +++..+..
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 45778999999888777666433 79 9999999999999 1 11111110
Q ss_pred ------------------cCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CC
Q 036857 67 ------------------NSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HI 121 (170)
Q Consensus 67 ------------------~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~l 121 (170)
..++||||||++.+.+.++. .....+-|+..+ . .+.+.+|+||+..+ .+
T Consensus 261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l----~--~G~l~~IgaTT~~e~~~~~~~ 334 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL----A--RGELRTIAATTWAEYKKYFEK 334 (852)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh----h--CCCeEEEEecCHHHHhhhhhc
Confidence 01789999999999873321 111122233322 2 35788888888643 59
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHHHHHHHhhc---CCCCHHHHH
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFEKIEERLAK---IQATPAEVP 165 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~~~~~~~~~---~~~s~a~i~ 165 (170)
|+||.| ||. .|+++.|+. ...++..+...+.. ..+++..+.
T Consensus 335 d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 335 DPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred cHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 999999 995 799999998 33444444443332 235555544
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.9e-11 Score=112.28 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL----------------------- 61 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l----------------------- 61 (170)
.+.+|.+|++|++++.+++.|.+.+ +| +|||||++|+.+| .++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 4678999999999999999888766 59 9999999999999 2221
Q ss_pred --------cccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857 62 --------KEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRIL 111 (170)
Q Consensus 62 --------~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~v 111 (170)
..+... ...|+||||+|.+. ....+.||..|+.- +.++++
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------~~AaNALLKTLEEP----P~~v~F 157 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------NHAFNAMLKTLEEP----PEHVKF 157 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------HHHHHHHHHhhccC----CCCceE
Confidence 111100 05699999999873 34577888877663 468899
Q ss_pred EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|++||.++.|.+.++. |+ .++.|..++.
T Consensus 158 ILaTtep~kLlpTIrS--RC-q~f~f~~ls~ 185 (700)
T PRK12323 158 ILATTDPQKIPVTVLS--RC-LQFNLKQMPP 185 (700)
T ss_pred EEEeCChHhhhhHHHH--HH-HhcccCCCCh
Confidence 9999999999999985 65 6778877776
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.24 E-value=6.1e-12 Score=109.24 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH---cccccc-------------cccc
Q 036857 18 KFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA---DLDLKE-------------FQSN 67 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA---~~~l~~-------------v~~~ 67 (170)
...+|.+++++++++++--. |...+ || ||||||++|+.|| +..+.. +..+
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence 56789999999998876411 11111 99 9999999999999 222221 1111
Q ss_pred C--------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCcc
Q 036857 68 S--------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCM 131 (170)
Q Consensus 68 ~--------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~ 131 (170)
+ ..|||+|||..+-. .....||-.++. ..+++|+|| |+--.|.+|++.+.|+
T Consensus 96 a~~~~~~gr~tiLflDEIHRfnK------~QQD~lLp~vE~------G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 96 ARKNRLLGRRTILFLDEIHRFNK------AQQDALLPHVEN------GTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred HHHHHhcCCceEEEEehhhhcCh------hhhhhhhhhhcC------CeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 1 78999999988743 223445554432 345666655 6777999999974443
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=5.2e-11 Score=107.13 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=84.6
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc---------------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL--------------------- 61 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l--------------------- 61 (170)
.....+|.+|+++++++.+.+.|...+ +| ||||||++|+++| .++.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 344789999999999999998876644 69 9999999999999 2211
Q ss_pred ---------cccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeE
Q 036857 62 ---------KEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRI 110 (170)
Q Consensus 62 ---------~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~ 110 (170)
..+... ...|++|||+|.+. ...++.|+..|+.. +..++
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------~~a~naLLk~LEep----p~~~v 160 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------KGAFNALLKTLEEP----PPHII 160 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------HHHHHHHHHHHhhc----CCCEE
Confidence 111000 05699999998773 34567787777653 45778
Q ss_pred EEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 111 LVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 111 vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++|+.++.+++++.. |+ ..++|..++.
T Consensus 161 fI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~ 189 (507)
T PRK06645 161 FIFATTEVQKIPATIIS--RC-QRYDLRRLSF 189 (507)
T ss_pred EEEEeCChHHhhHHHHh--cc-eEEEccCCCH
Confidence 88888989999999886 55 5678887776
No 66
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.22 E-value=9e-12 Score=93.40 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=50.5
Q ss_pred cc-CCCcHHHHHHHHH---ccccccccccC----------------------------ceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS----------------------------RSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~----------------------------p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| ||+|||++|+++| +..+..|+.+. ..|+|+|||.. ...++
T Consensus 5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr------appkt 78 (131)
T PF07726_consen 5 EGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR------APPKT 78 (131)
T ss_dssp ES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG------S-HHH
T ss_pred ECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc------CCHHH
Confidence 79 9999999999999 44444443332 67999999964 45678
Q ss_pred HHHHHHHhh-------chhccCCCCeEEEEeCCCCC-----CCCCCCCCCCcc
Q 036857 91 LSALLKFVD-------GLWSSSGDGRILVMTTDYKD-----HIDPVPLRPSCM 131 (170)
Q Consensus 91 ~~~ll~~lD-------g~~~~~~~~~~vi~tTN~~~-----~lD~AllRpgR~ 131 (170)
.+++|+.|. |.....++..+||+|.|+.+ .|+.|++ +||
T Consensus 79 QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~--DRF 129 (131)
T PF07726_consen 79 QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQL--DRF 129 (131)
T ss_dssp HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHH--TTS
T ss_pred HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHh--ccc
Confidence 889998863 44444567789999999877 6777776 465
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1e-10 Score=105.29 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
....|.+|+++++++.+++.|...+ || ||||||++|+++| .+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 3578999999999999998886655 69 9999999999999 221
Q ss_pred -ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 61 -LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 61 -l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
+..+... .+.|++|||+|.+ .....+.|+..++.- +..+++|++||.
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l------s~~a~naLLk~LEep----~~~t~~Il~t~~ 155 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM------SKSAFNALLKTLEEP----PEHVIFILATTE 155 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc------CHHHHHHHHHHHHhC----CCCEEEEEEcCC
Confidence 1111100 0679999999865 234567787777664 347788888899
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.+.+++.. |+. +++|..++.
T Consensus 156 ~~kl~~~I~S--Rc~-~~~f~~ls~ 177 (504)
T PRK14963 156 PEKMPPTILS--RTQ-HFRFRRLTE 177 (504)
T ss_pred hhhCChHHhc--ceE-EEEecCCCH
Confidence 9999999986 543 688888777
No 68
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.6e-11 Score=111.39 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=78.0
Q ss_pred cCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------c------cccccccccC---------
Q 036857 29 ATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------D------LDLKEFQSNS--------- 68 (170)
Q Consensus 29 ~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~------~~l~~v~~~~--------- 68 (170)
-+..++|+++++.+ +| ||+|||+++|+|| + .+.++++...
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG 493 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG 493 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCCh
Confidence 45677888888777 59 9999999999999 1 1233333322
Q ss_pred ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCCCCCC
Q 036857 69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~lD~Al 125 (170)
..+++|||+|.+.. +.+...-++||+.||--..+. -..|++|+|.|.++.|+++|
T Consensus 494 kiIq~LK~v~t~NPliLiDEvDKlG~--g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pL 571 (906)
T KOG2004|consen 494 KIIQCLKKVKTENPLILIDEVDKLGS--GHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPL 571 (906)
T ss_pred HHHHHHHhhCCCCceEEeehhhhhCC--CCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhh
Confidence 77889999999985 445556678888777432210 12689999999999999999
Q ss_pred CCCCccceEEEcCCCCc
Q 036857 126 LRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~ 142 (170)
+ +|+.+.=--+|-.+
T Consensus 572 l--DRMEvIelsGYv~e 586 (906)
T KOG2004|consen 572 L--DRMEVIELSGYVAE 586 (906)
T ss_pred h--hhhheeeccCccHH
Confidence 9 58876444444333
No 69
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.21 E-value=3.4e-11 Score=112.71 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=73.1
Q ss_pred cccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------c------------ccccccc----------
Q 036857 25 SNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------D------------LDLKEFQ---------- 65 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------~------------~~l~~v~---------- 65 (170)
++.+++.+..-+++...+ +| ||||||++|+++| + +++..+.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 555655555544444433 79 9999999999999 1 0111110
Q ss_pred -----------ccCceeEeeechhhhccCCc--cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857 66 -----------SNSRSILVIEDAVTSFESNA--YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLR 127 (170)
Q Consensus 66 -----------~~~p~il~iDEiD~~~~~~~--~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllR 127 (170)
...++||||||+|.+++.+. ..+.... +.+..... ..++.+|+|||..+ ..|+||.|
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~---nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r 339 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA---NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHH---HHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHh
Confidence 01178999999999987432 1222232 23333333 35788999999765 68999999
Q ss_pred CCccceEEEcCCCCc
Q 036857 128 PSCMDMHFHLSSHTF 142 (170)
Q Consensus 128 pgR~d~~i~~~~p~~ 142 (170)
||+ .|+++.|+.
T Consensus 340 --RFq-~I~v~ePs~ 351 (758)
T PRK11034 340 --RFQ-KIDITEPSI 351 (758)
T ss_pred --hCc-EEEeCCCCH
Confidence 996 799999998
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.6e-11 Score=107.57 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD----------------------- 60 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~----------------------- 60 (170)
....+|.+|+++++++.+.+.|...+ || ||||||++|+++| .++
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 34678999999999999999887766 69 9999999999999 111
Q ss_pred ---cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 61 ---LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 61 ---l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+..+.... ..|++|||+|.+. ....+.||..|+.. +..+.+|++|
T Consensus 87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------~~a~naLLk~LEep----p~~~~fIlat 156 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------GHSFNALLKTLEEP----PSHVKFILAT 156 (509)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------HHHHHHHHHHHhcc----CCCeEEEEEE
Confidence 11121100 4599999999873 34567888877765 4578788888
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.++.+.+.++. |+ ..++|..++.
T Consensus 157 td~~kl~~tI~S--Rc-~~~~f~~l~~ 180 (509)
T PRK14958 157 TDHHKLPVTVLS--RC-LQFHLAQLPP 180 (509)
T ss_pred CChHhchHHHHH--Hh-hhhhcCCCCH
Confidence 888888888764 55 5566766555
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.3e-10 Score=107.14 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------- 59 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------- 59 (170)
+.+|.+|+++++++.+.+.|...+ || ||||||++|+++| .+
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence 568899999999999998877655 69 9999999999999 11
Q ss_pred cccccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 60 DLKEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 60 ~l~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
++..+... . ..|+||||+|.+ +....+.||..|+.- ++.+.+|++|+.
T Consensus 89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------s~~a~NALLKtLEEP----p~~v~FIL~Tt~ 158 (647)
T PRK07994 89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------SRHSFNALLKTLEEP----PEHVKFLLATTD 158 (647)
T ss_pred CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC------CHHHHHHHHHHHHcC----CCCeEEEEecCC
Confidence 11112111 0 469999999987 335678888888764 457788888888
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.|.+.++. |+ ..++|..++.
T Consensus 159 ~~kLl~TI~S--RC-~~~~f~~Ls~ 180 (647)
T PRK07994 159 PQKLPVTILS--RC-LQFHLKALDV 180 (647)
T ss_pred ccccchHHHh--hh-eEeeCCCCCH
Confidence 9999988875 74 8888888877
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.4e-11 Score=106.57 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=83.4
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL-------------------------- 59 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~-------------------------- 59 (170)
...|.+|+++++++.+.+.|...+ +| ||||||++|+.+| .+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 567999999999999999887655 69 9999999999999 11
Q ss_pred ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 60 DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 60 ~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
++..+...+ ..|++|||+|.+. ....+.|+..|+.- +..+.+|++|+.
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------~~A~NaLLK~LEeP----p~~v~fIlatte 155 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------NSAFNALLKTLEEP----APHVKFILATTE 155 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------HHHHHHHHHHHhCC----CCCeEEEEEeCC
Confidence 111111110 5699999998773 34577888888765 457888888888
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.+.+.++. |+ ..++|..++.
T Consensus 156 ~~Kl~~tI~S--Rc-~~~~f~~l~~ 177 (491)
T PRK14964 156 VKKIPVTIIS--RC-QRFDLQKIPT 177 (491)
T ss_pred hHHHHHHHHH--hh-eeeecccccH
Confidence 9999998875 44 4578877766
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=6.1e-11 Score=109.10 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=84.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
.+.+|.+|+++++++.+++.|...+ +| ||||||++|+++| .+
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 4678999999999999999887766 69 9999999999999 22
Q ss_pred -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... ...|+||||+|.+- ....+.|+..|+.. +..+.+|++||
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------~~A~NALLKtLEEP----P~~v~FILaTt 156 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------THSFNALLKTLEEP----PEHVKFLFATT 156 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------HHHHHHHHHHHhcC----CCCcEEEEEEC
Confidence 11111111 04699999999773 24567788877764 45778888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+.++. |+ .+++|..++.
T Consensus 157 d~~kIp~TIlS--RC-q~feFkpLs~ 179 (702)
T PRK14960 157 DPQKLPITVIS--RC-LQFTLRPLAV 179 (702)
T ss_pred ChHhhhHHHHH--hh-heeeccCCCH
Confidence 88889888874 65 6788887776
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.19 E-value=1.6e-10 Score=97.29 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=77.8
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc------------cccccc-------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL------------DLKEFQ------- 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~------------~l~~v~------- 65 (170)
.....|.+|+++++++.+++++...+ || ||||||++|+++| .+ +.....
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 44788999999999999999887765 79 9999999999998 11 111100
Q ss_pred -------------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857 66 -------------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG 108 (170)
Q Consensus 66 -------------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~ 108 (170)
...+.+|++||+|.+.. .....|...++.. +..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------~~~~~L~~~le~~----~~~ 155 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------DAQQALRRIMEQY----SRT 155 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------HHHHHHHHHHHhc----cCC
Confidence 01146999999997732 2234455555544 234
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..+|++||.+..+.+++.. |. ..++|..|+.
T Consensus 156 ~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~ 186 (337)
T PRK12402 156 CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD 186 (337)
T ss_pred CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence 5566677777777777775 54 4688888876
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.8e-10 Score=99.10 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc------------cccc--ccc-c--
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------DLKE--FQS-N-- 67 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------~l~~--v~~-~-- 67 (170)
...+|.+|+++++++...+.+...+ || ||+|||++|+++| .+ ++.. +.. .
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 4678999999999999998887666 79 9999999999999 11 0000 000 0
Q ss_pred -------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCC
Q 036857 68 -------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRP 128 (170)
Q Consensus 68 -------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRp 128 (170)
.+.|+++||+|.+.. ...+.++..++.. +...++|++||..+.+.+++.+.
T Consensus 89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHhc
Confidence 056999999997632 3467777777653 34667777888889999998863
Q ss_pred CccceEEEcCCCCc
Q 036857 129 SCMDMHFHLSSHTF 142 (170)
Q Consensus 129 gR~d~~i~~~~p~~ 142 (170)
++ .++|..|+.
T Consensus 159 ~~---~v~~~~~~~ 169 (367)
T PRK14970 159 CQ---IFDFKRITI 169 (367)
T ss_pred ce---eEecCCccH
Confidence 43 578888775
No 76
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=4.2e-11 Score=113.55 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=79.1
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc-----
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ----- 65 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~----- 65 (170)
..|..++.+++.+..-+++...+ || ||||||++|+++| . +++..+.
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 44667899999887766666543 79 9999999999999 1 1111110
Q ss_pred ------------c-----cCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857 66 ------------S-----NSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID 122 (170)
Q Consensus 66 ------------~-----~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD 122 (170)
. ..++||||||++.+.+.++ ........+|. .... .+.+.+|+||+..+ .+|
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lk---p~l~--~g~l~~IgaTt~~e~r~~~~~d 326 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK---PALA--RGELHCVGATTLDEYRQYIEKD 326 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhc---chhh--cCCCeEEEcCCCHHHHHHhhhc
Confidence 0 1178999999999986332 12222233332 1222 35789999999877 489
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+|+.| ||+ .|.++.|+.
T Consensus 327 ~al~r--Rf~-~i~v~eP~~ 343 (857)
T PRK10865 327 AALER--RFQ-KVFVAEPSV 343 (857)
T ss_pred HHHHh--hCC-EEEeCCCCH
Confidence 99999 998 588999987
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=9.7e-11 Score=110.55 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=84.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL----------------------- 61 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l----------------------- 61 (170)
...+|.+|+++++++.+++.|...+ || ||||||++||++| .++.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 4678899999999999988876554 69 9999999999999 2211
Q ss_pred ---cccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 62 ---KEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 62 ---~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
..+... . ..|+||||+|.+ .....+.||..|+.- +..+.+|++|+
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------T~eAqNALLKtLEEP----P~~vrFILaTT 157 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------SRSSFNALLKTLEEP----PEHVKFLLATT 157 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------CHHHHHHHHHHHhcc----CCCeEEEEECC
Confidence 111110 0 469999999987 345678888888764 45777888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.|.+.++. |+ .+++|..++.
T Consensus 158 e~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 158 DPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred CchhchHHHHH--hh-eEEeCCCCCH
Confidence 88889888875 55 6788877766
No 78
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.18 E-value=6.2e-11 Score=100.84 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=68.1
Q ss_pred cc-CCCcHHHHHHHHH---ccccccccccC-------------------------------ce---eEeeechhhhccCC
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-------------------------------RS---ILVIEDAVTSFESN 84 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-------------------------------p~---il~iDEiD~~~~~~ 84 (170)
.| ||||||++|+++| +.++..++.+. .. |+|+|||+..
T Consensus 49 ~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra---- 124 (329)
T COG0714 49 EGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA---- 124 (329)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC----
Confidence 49 9999999999999 22222222211 33 9999999754
Q ss_pred ccchHHHHHHHHHhhc-------hh-ccCCCCeEEEEeCC-----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 85 AYNSVALSALLKFVDG-------LW-SSSGDGRILVMTTD-----YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 85 ~~~~~~~~~ll~~lDg-------~~-~~~~~~~~vi~tTN-----~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
...+.+.|+..|+. .. ...+...++++|+| ....+++|+++ ||-+.+.++||+.
T Consensus 125 --~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 125 --PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred --CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 45677888888764 22 12245778899999 66688999997 9999999999965
No 79
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=1.7e-10 Score=104.91 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=84.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|.+|+++++++.+.+.+...+ || ||||||++|+.+| .+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 3568999999999999998887766 69 9999999999999 11
Q ss_pred -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... ...|++|||+|.+. ....+.|+..++.. +..+++|++|+
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------~~a~naLLKtLEep----p~~~ifIlatt 157 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------TGAFNALLKTLEEP----PAHVIFILATT 157 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------HHHHHHHHHHhcCC----CCCeEEEEEeC
Confidence 11111110 05699999999773 34577888877654 45778888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+++.+++ |+. .++|..|+.
T Consensus 158 ~~~ki~~tI~S--Rc~-~~~f~~~~~ 180 (559)
T PRK05563 158 EPHKIPATILS--RCQ-RFDFKRISV 180 (559)
T ss_pred ChhhCcHHHHh--Hhe-EEecCCCCH
Confidence 89999999875 653 577887766
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=99.17 E-value=1.8e-10 Score=93.59 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCCCCCCcccccCChhhH------HHhhc----C--ccc-CCCcHHHHHHHHH-c-----cccccccc-----------
Q 036857 17 NKFEHPATSNTIATDFDMN------KALVD----D--YWG-PYTGKSSLIAAMA-D-----LDLKEFQS----------- 66 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k------~~l~~----~--~~G-PGtGKT~la~aiA-~-----~~l~~v~~----------- 66 (170)
+....+.+||+.+..+... +.... . +|| ||||||++++|+| . .....+..
T Consensus 7 ~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~ 86 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVL 86 (229)
T ss_pred CCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHH
Confidence 4455666788887544321 11111 0 179 9999999999999 1 11110100
Q ss_pred ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCCC---CCCCCCCccceEEEcCC
Q 036857 67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHID---PVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~lD---~AllRpgR~d~~i~~~~ 139 (170)
....+|++||++.+.+... ....+.+.++.... .+..++++|+| .|..++ +.+.++.+....++++.
T Consensus 87 ~~~~~~dlLilDDi~~~~~~~~----~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~ 160 (229)
T PRK06893 87 ENLEQQDLVCLDDLQAVIGNEE----WELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND 160 (229)
T ss_pred hhcccCCEEEEeChhhhcCChH----HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC
Confidence 1267999999998865322 22345566666554 23445555555 566554 78887566678999999
Q ss_pred CCc
Q 036857 140 HTF 142 (170)
Q Consensus 140 p~~ 142 (170)
|+.
T Consensus 161 pd~ 163 (229)
T PRK06893 161 LTD 163 (229)
T ss_pred CCH
Confidence 998
No 81
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=9.5e-11 Score=107.39 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=84.4
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD----------------------- 60 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~----------------------- 60 (170)
.....|.+|++|++++.+++.|...+ +| ||||||++|+++| .+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCC
Confidence 34678999999999999988877655 69 9999999999999 111
Q ss_pred ---ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 61 ---LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 61 ---l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+..+... ...||||||+|.+. ....+.|+..|+.- ...+++|++|
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------~~a~naLLk~LEEP----~~~~ifILaT 156 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------REAFNALLKTLEEP----PARVTFVLAT 156 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------HHHHHHHHHHhhcc----CCCEEEEEec
Confidence 1112110 05699999999873 34567788887764 3578888889
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|.++.+.+.++. |+ .+|+|..++.
T Consensus 157 t~~~kll~TI~S--Rc-q~i~F~pLs~ 180 (624)
T PRK14959 157 TEPHKFPVTIVS--RC-QHFTFTRLSE 180 (624)
T ss_pred CChhhhhHHHHh--hh-hccccCCCCH
Confidence 999999888775 65 3678887766
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.16 E-value=1.1e-10 Score=99.04 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=83.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
...+|.+|+++++++..++.+...+ || ||+|||++|+++| .+
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 85 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSS 85 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4668899999999999999887655 79 9999999999999 11
Q ss_pred -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... ...|+++||+|.+. ....+.++..++.. +..+++|++||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------~~~~~~Ll~~le~~----~~~~~lIl~~~ 155 (355)
T TIGR02397 86 LDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------KSAFNALLKTLEEP----PEHVVFILATT 155 (355)
T ss_pred CCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------HHHHHHHHHHHhCC----ccceeEEEEeC
Confidence 11111100 04699999998773 24567788877664 45778888889
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+++.+ |+ ..++|+.|+.
T Consensus 156 ~~~~l~~~l~s--r~-~~~~~~~~~~ 178 (355)
T TIGR02397 156 EPHKIPATILS--RC-QRFDFKRIPL 178 (355)
T ss_pred CHHHHHHHHHh--he-eEEEcCCCCH
Confidence 89998898886 65 4788887766
No 83
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.8e-10 Score=108.75 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=84.5
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
.+..|.+|++|++++.+++.|...+ || ||||||++|+.+| .++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 4678999999999999999887666 69 9999999999999 221
Q ss_pred ----cccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 61 ----LKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 61 ----l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+..+.. ....|+||||+|.+. ....+.||+.|+.. +..+++|++
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------~~a~NaLLK~LEEp----P~~~~fIl~ 156 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------PQGFNALLKIVEEP----PEHLKFIFA 156 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------HHHHHHHHHHHhCC----CCCeEEEEE
Confidence 111111 005699999999883 35567888888776 457888888
Q ss_pred CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 115 TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+.++.|-+.+.. |+ .+++|..++.
T Consensus 157 tt~~~kLl~TIrS--Rc-~~v~F~~l~~ 181 (824)
T PRK07764 157 TTEPDKVIGTIRS--RT-HHYPFRLVPP 181 (824)
T ss_pred eCChhhhhHHHHh--he-eEEEeeCCCH
Confidence 8888888888775 44 5677777655
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.7e-10 Score=105.35 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=84.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
...+|.+|+++++++.+.+.+...+ +| ||||||++|+++| .+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 4678999999999999998887655 69 9999999999999 11
Q ss_pred -ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+.... ..|++|||+|.+-. ...+.|+..|+.. +..+++|++|+
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------~A~NaLLKtLEEP----p~~tvfIL~Tt 157 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------SAWNALLKTLEEP----PKHVVFIFATT 157 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------HHHHHHHHHHHhC----CCcEEEEEECC
Confidence 111121100 45999999997732 3457788887764 45788888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.|.+++++ |+. .++|..++.
T Consensus 158 ~~~KLl~TI~S--Rcq-~ieF~~Ls~ 180 (605)
T PRK05896 158 EFQKIPLTIIS--RCQ-RYNFKKLNN 180 (605)
T ss_pred ChHhhhHHHHh--hhh-hcccCCCCH
Confidence 89999999886 553 688888776
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.13 E-value=4.9e-10 Score=93.50 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=81.1
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------ccccc-----------
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DLKEF----------- 64 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l~~v----------- 64 (170)
.+++...|++|+++++.+++.+.+...+ || ||||||+++++++ .+ .+..+
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 85 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI 85 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH
Confidence 3566899999999999999988877655 79 9999999999998 11 11111
Q ss_pred ------------cc-cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857 65 ------------QS-NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM 131 (170)
Q Consensus 65 ------------~~-~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~ 131 (170)
.. ..+.+|++||+|.+.. ...+.++..++... ....+|+++|....+.+++.+ |+
T Consensus 86 ~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~ 153 (319)
T PRK00440 86 RNKIKEFARTAPVGGAPFKIIFLDEADNLTS------DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RC 153 (319)
T ss_pred HHHHHHHHhcCCCCCCCceEEEEeCcccCCH------HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHH--Hh
Confidence 00 1156999999998733 22345666665542 356677788888888777775 55
Q ss_pred ceEEEcCCCCc
Q 036857 132 DMHFHLSSHTF 142 (170)
Q Consensus 132 d~~i~~~~p~~ 142 (170)
. .++|+.++.
T Consensus 154 ~-~~~~~~l~~ 163 (319)
T PRK00440 154 A-VFRFSPLKK 163 (319)
T ss_pred h-eeeeCCCCH
Confidence 4 478888776
No 86
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.13 E-value=2.6e-10 Score=97.85 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=83.2
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------cc----cc-------------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DL----KE------------- 63 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l----~~------------- 63 (170)
+.|-+|.++++++..++.+.-.+ +| ||||||++||++| -+ ++ ..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 46788999999999998765322 59 9999999999998 11 00 00
Q ss_pred --------------------ccc----------cC------------ceeEeeechhhhccCCccchHHHHHHHHHhhc-
Q 036857 64 --------------------FQS----------NS------------RSILVIEDAVTSFESNAYNSVALSALLKFVDG- 100 (170)
Q Consensus 64 --------------------v~~----------~~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg- 100 (170)
+.. .. ..+||+||++.+ .....+.|++.|+.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl------~~~~q~~Lle~mee~ 155 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL------EDHIVDLLLDVAQSG 155 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC------CHHHHHHHHHHHHcC
Confidence 100 00 459999999876 34566777777643
Q ss_pred --------hhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857 101 --------LWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 101 --------~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.....+..+++++|+|..+ .++++++. ||.+++.+++|..
T Consensus 156 ~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~ 204 (334)
T PRK13407 156 ENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRD 204 (334)
T ss_pred CeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCc
Confidence 2222345788999999755 68999996 9999999999987
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=8.5e-11 Score=104.13 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=68.0
Q ss_pred cccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH-cc---------ccccc---------------------
Q 036857 25 SNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA-DL---------DLKEF--------------------- 64 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA-~~---------~l~~v--------------------- 64 (170)
++++.++++..+.+...+ +| ||||||++|+++| .+ ....+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~ 253 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFR 253 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeE
Confidence 677788887777776555 79 9999999999998 00 00000
Q ss_pred -------------ccc--CceeEeeechhhhccCCccchHHHHHHHHHhhch------------------hccCCCCeEE
Q 036857 65 -------------QSN--SRSILVIEDAVTSFESNAYNSVALSALLKFVDGL------------------WSSSGDGRIL 111 (170)
Q Consensus 65 -------------~~~--~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~------------------~~~~~~~~~v 111 (170)
..+ .|++|||||+|.- .......+++..|+.- .-..+.++.+
T Consensus 254 ~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----ni~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 254 RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----NLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred ecCchHHHHHHHHHhcccCCcEEEEehhhcc-----CHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 000 1799999999854 2233334444433310 0123578999
Q ss_pred EEeCCCCC----CCCCCCCCCCccce
Q 036857 112 VMTTDYKD----HIDPVPLRPSCMDM 133 (170)
Q Consensus 112 i~tTN~~~----~lD~AllRpgR~d~ 133 (170)
|+|+|..+ .+|.|++| ||..
T Consensus 329 IgTMNt~Drs~~~lD~AlrR--RF~f 352 (459)
T PRK11331 329 IGLMNTADRSLAVVDYALRR--RFSF 352 (459)
T ss_pred EEecCccccchhhccHHHHh--hhhe
Confidence 99999887 89999999 8865
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2e-10 Score=106.21 Aligned_cols=112 Identities=22% Similarity=0.265 Sum_probs=83.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
.+.+|.+|+++++++.+++.|...+ +| ||||||++|+++| .+
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 4678999999999999999887766 69 9999999999999 11
Q ss_pred -ccccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+.... ..|+||||+|.+. ....+.||..|+.. +..+.+|++||
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------~~A~NALLKtLEEP----p~~v~fILaTt 157 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------KSAFNAMLKTLEEP----PEHVKFILATT 157 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------HHHHHHHHHHHHhC----CCCcEEEEEeC
Confidence 111111000 4699999998762 34567888888764 35778888889
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+.++ +|+ ..+.|..++.
T Consensus 158 d~~kL~~TIr--SRC-~~f~f~~Ls~ 180 (709)
T PRK08691 158 DPHKVPVTVL--SRC-LQFVLRNMTA 180 (709)
T ss_pred CccccchHHH--HHH-hhhhcCCCCH
Confidence 8999988877 476 5566666665
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=4.6e-10 Score=101.80 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=82.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|.+|+++++++.+.+.|...+ || ||||||++|+++| .+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 4668999999999999988776555 69 9999999999999 11
Q ss_pred -ccccccc-c---------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQS-N---------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~-~---------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+.. . ...|+||||+|.+. ....+.||..|+.. ++.+++|++|+
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------~~a~naLLK~LEep----p~~v~fIL~Tt 157 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------KQSFNALLKTLEEP----PEYVKFILATT 157 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------HHHHHHHHHHHhcC----CCCceEEEEEC
Confidence 1111111 0 05699999998773 34567888888764 45676777777
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+.++. |+ ..++|..++.
T Consensus 158 d~~kil~tI~S--Rc-~~~~f~~Ls~ 180 (546)
T PRK14957 158 DYHKIPVTILS--RC-IQLHLKHISQ 180 (546)
T ss_pred ChhhhhhhHHH--he-eeEEeCCCCH
Confidence 78888888764 55 7788888876
No 90
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=3.4e-10 Score=103.36 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=84.5
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
...+|.+|+++++++.+++.|...+ +| ||||||++|+++| .++
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence 3578999999999999999877655 69 9999999999999 211
Q ss_pred ----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 61 ----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 61 ----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+..+.... ..|++|||+|.+. ....+.||..|+.. +..+++|++
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------~~A~NALLK~LEEp----p~~~~fIL~ 154 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------TAGFNALLKIVEEP----PEHLIFIFA 154 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------HHHHHHHHHHHhcC----CCCeEEEEE
Confidence 11111100 4699999998773 34677888888764 458888888
Q ss_pred CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 115 TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+.++.|.++++. | ..+++|..++.
T Consensus 155 tte~~kll~TI~S--R-c~~~~F~~l~~ 179 (584)
T PRK14952 155 TTEPEKVLPTIRS--R-THHYPFRLLPP 179 (584)
T ss_pred eCChHhhHHHHHH--h-ceEEEeeCCCH
Confidence 8988999999875 5 35788887766
No 91
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.5e-10 Score=104.18 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=85.7
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc---------------------
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD--------------------- 60 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~--------------------- 60 (170)
-......|.+|+++++++++++.|...+ || ||||||++|+++| .++
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 3445678999999999999999887776 69 9999999999999 111
Q ss_pred -----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857 61 -----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVM 113 (170)
Q Consensus 61 -----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~ 113 (170)
+..+.... ..|++|||+|.+. ....+.|+..|+.- +..+++|+
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------~~a~naLLk~LEep----p~~~~fIl 154 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------TNAFNALLKTLEEP----PPHVKFIF 154 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------HHHHHHHHHHHHcC----CCCeEEEE
Confidence 11111100 4599999999773 34567888888764 45888888
Q ss_pred eCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 114 TTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 114 tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+||.++.|.+.++. |+ ..++|..++.
T Consensus 155 ~t~~~~kl~~tI~S--Rc-~~~~f~~l~~ 180 (576)
T PRK14965 155 ATTEPHKVPITILS--RC-QRFDFRRIPL 180 (576)
T ss_pred EeCChhhhhHHHHH--hh-hhhhcCCCCH
Confidence 88999999999875 44 4677776665
No 92
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=9.6e-11 Score=87.16 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=51.8
Q ss_pred cc-CCCcHHHHHHHHH---cccccccccc-------------------------------CceeEeeechhhhccCCccc
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSN-------------------------------SRSILVIEDAVTSFESNAYN 87 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~-------------------------------~p~il~iDEiD~~~~~~~~~ 87 (170)
+| ||||||++|+.+| ...+..+..+ .+++++|||++.. .
T Consensus 5 ~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a------~ 78 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA------P 78 (139)
T ss_dssp EESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--------
T ss_pred ECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC------C
Confidence 69 9999999999999 1111111000 0999999999864 2
Q ss_pred hHHHHHHHHHhhchhcc---------CCC------CeEEEEeCCCCC----CCCCCCCCCCcc
Q 036857 88 SVALSALLKFVDGLWSS---------SGD------GRILVMTTDYKD----HIDPVPLRPSCM 131 (170)
Q Consensus 88 ~~~~~~ll~~lDg~~~~---------~~~------~~~vi~tTN~~~----~lD~AllRpgR~ 131 (170)
...+..+++.+|.-.-. ... +..+|+|+|..+ .+++|++| ||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 45555555555422110 011 389999999888 99999998 75
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.3e-10 Score=103.43 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=82.5
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
...+|.+|+++++++.+++.+...+ +| ||||||++|+++| .++
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3567899999999999998876655 69 9999999999999 211
Q ss_pred --ccccccc--C--------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 61 --LKEFQSN--S--------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 61 --l~~v~~~--~--------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+..+... . ..|++|||+|.+. ....+.||..|+.. ++.+++|++|+
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------~~a~naLLK~LEep----p~~~~fIL~t~ 157 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------KSAFNAMLKTLEEP----PEHVKFILATT 157 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------HHHHHHHHHHHhCC----CCCEEEEEEeC
Confidence 1111100 0 4699999999773 34567888888774 45777888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+.++. |+ ..++|..++.
T Consensus 158 d~~kil~tI~S--Rc-~~~~f~~l~~ 180 (527)
T PRK14969 158 DPQKIPVTVLS--RC-LQFNLKQMPP 180 (527)
T ss_pred ChhhCchhHHH--HH-HHHhcCCCCH
Confidence 88888887664 54 6778887776
No 94
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.09 E-value=2.8e-10 Score=107.95 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=77.0
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----------------ccccccc-----
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----------------LDLKEFQ----- 65 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----------------~~l~~v~----- 65 (170)
..|..++.+++.+..-+++...+ || ||||||++|+++| . +++..+.
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~ 246 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY 246 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence 35667888988887766666543 79 9999999999999 1 1111110
Q ss_pred -----------------ccCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCC
Q 036857 66 -----------------SNSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HID 122 (170)
Q Consensus 66 -----------------~~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD 122 (170)
...++||||||++.+++.+. ........+|.- ... ...+.+|++||..+ .+|
T Consensus 247 ~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~---~l~--~g~i~~IgaTt~~e~r~~~~~d 321 (852)
T TIGR03346 247 RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP---ALA--RGELHCIGATTLDEYRKYIEKD 321 (852)
T ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhch---hhh--cCceEEEEeCcHHHHHHHhhcC
Confidence 01178999999999986322 111222233321 222 35788888888664 589
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+|+.| ||. .|.++.|+.
T Consensus 322 ~al~r--Rf~-~i~v~~p~~ 338 (852)
T TIGR03346 322 AALER--RFQ-PVFVDEPTV 338 (852)
T ss_pred HHHHh--cCC-EEEeCCCCH
Confidence 99999 996 588999987
No 95
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=7.2e-10 Score=98.54 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|.+|+++++++.+++.+...+ || ||+|||++|+++| .+
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 4568899999999999988877666 79 9999999999999 11
Q ss_pred --cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 60 --DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 60 --~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
++..+... ...|++|||+|.+.. ...+.|+..|+.. +..+++|++|
T Consensus 89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------~~~n~LLk~lEep----~~~~~~Il~t 158 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------EAFNSLLKTLEEP----PQHVKFFLAT 158 (451)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------HHHHHHHHHhhcC----CCCceEEEEe
Confidence 11111110 167999999998733 3456777777764 3577888888
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|.++.|.+++.. |+. .++|..++.
T Consensus 159 ~~~~kl~~tI~s--Rc~-~v~f~~l~~ 182 (451)
T PRK06305 159 TEIHKIPGTILS--RCQ-KMHLKRIPE 182 (451)
T ss_pred CChHhcchHHHH--hce-EEeCCCCCH
Confidence 988999999886 553 688888776
No 96
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.09 E-value=4.6e-10 Score=95.95 Aligned_cols=68 Identities=7% Similarity=0.042 Sum_probs=45.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhc--------hhcc--CCCCeEEEEeCCCCC------------CCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDG--------LWSS--SGDGRILVMTTDYKD------------HIDPVPL 126 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg--------~~~~--~~~~~~vi~tTN~~~------------~lD~All 126 (170)
++++++||+|..- ..+.+.|...||. .... ...+..+|+|+|..+ .++.|++
T Consensus 135 g~illlDEin~a~------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 135 NVALCFDEYDAGR------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred CeEEEechhhccC------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 7789999999762 2334444444431 1000 112567999999866 4578888
Q ss_pred CCCccceEEEcCCCCcch
Q 036857 127 RPSCMDMHFHLSSHTFRH 144 (170)
Q Consensus 127 RpgR~d~~i~~~~p~~~~ 144 (170)
.||-+.+.++||+...
T Consensus 209 --DRF~i~~~~~Yp~~e~ 224 (327)
T TIGR01650 209 --DRWSIVTTLNYLEHDN 224 (327)
T ss_pred --hheeeEeeCCCCCHHH
Confidence 5999999999999933
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=5.2e-10 Score=102.69 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
.+.+|.+|+++++++.+.+.|...+ || ||||||++|+++| .++
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 4678999999999999998887766 69 9999999999998 221
Q ss_pred -------cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857 61 -------LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRIL 111 (170)
Q Consensus 61 -------l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~v 111 (170)
+..+.... ..|++|||+|.+. ....+.||..|+.- +..+.+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------~~a~NaLLKtLEEP----P~~~~f 157 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------NTAFNAMLKTLEEP----PEYLKF 157 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------HHHHHHHHHhcccC----CCCeEE
Confidence 11111100 3599999999873 34567788777664 457777
Q ss_pred EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|++|+.++.+.+.++. |+ ..++|..++.
T Consensus 158 IL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~ 185 (618)
T PRK14951 158 VLATTDPQKVPVTVLS--RC-LQFNLRPMAP 185 (618)
T ss_pred EEEECCchhhhHHHHH--hc-eeeecCCCCH
Confidence 8888888888888765 55 7788877766
No 98
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=3.5e-10 Score=105.10 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=87.0
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc--------------------
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL-------------------- 61 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l-------------------- 61 (170)
.+....+|.+|+++++++.+.+.|...+ || ||||||++|+++| .+..
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 3445789999999999999988887766 69 9999999999999 1111
Q ss_pred ---ccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 62 ---KEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 62 ---~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
..+.. ....|++|||+|.+.. ...+.||..|+.. +..+++|++|+
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------~A~NALLKtLEEP----P~~tifILaTt 156 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------SAFNALLKTLEEP----PKHVIFILATT 156 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------HHHHHHHHHhhcC----CCceEEEEEcC
Confidence 00110 0056999999997732 4577888888764 45788888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.|.+.++. |+ .+++|..++.
T Consensus 157 e~~KLl~TI~S--Rc-q~ieF~~L~~ 179 (725)
T PRK07133 157 EVHKIPLTILS--RV-QRFNFRRISE 179 (725)
T ss_pred ChhhhhHHHHh--hc-eeEEccCCCH
Confidence 99999999886 66 4788988877
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.4e-10 Score=100.00 Aligned_cols=106 Identities=24% Similarity=0.231 Sum_probs=75.5
Q ss_pred CcccccCChhhHHHhhcCc--------------------cc-CCCcHHHHHHHHH-ccc---------------------
Q 036857 24 TSNTIATDFDMNKALVDDY--------------------WG-PYTGKSSLIAAMA-DLD--------------------- 60 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~--------------------~G-PGtGKT~la~aiA-~~~--------------------- 60 (170)
.|++|++++.+++.|...+ || ||+|||++|+++| .+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 4788999888877554322 69 9999999999999 111
Q ss_pred ----ccccccc--C---------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857 61 ----LKEFQSN--S---------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVM 113 (170)
Q Consensus 61 ----l~~v~~~--~---------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~ 113 (170)
+..+..+ . ..|+||||+|.+.. ...+.||..|+.- +.++++|+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------~aanaLLk~LEep----~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------RAANALLKAVEEP----PPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------HHHHHHHHHhhcC----CCCCeEEE
Confidence 1011110 0 45999999998833 3457788888653 34666666
Q ss_pred eCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 114 TTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 114 tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|+.++.|.|++++ |+ ..++|+.|+.
T Consensus 153 ~a~~~~~llpTIrS--Rc-~~i~f~~~~~ 178 (394)
T PRK07940 153 CAPSPEDVLPTIRS--RC-RHVALRTPSV 178 (394)
T ss_pred EECChHHChHHHHh--hC-eEEECCCCCH
Confidence 67779999999987 55 5899999987
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.06 E-value=2.5e-10 Score=107.37 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=75.1
Q ss_pred ccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH---c-----cccccccc----------------
Q 036857 28 IATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS---------------- 66 (170)
Q Consensus 28 v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA---~-----~~l~~v~~---------------- 66 (170)
..+.+.+|+++...+ +| ||||||++++++| . +.+..+..
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~ 403 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP 403 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence 677888888887544 69 9999999999999 1 11111100
Q ss_pred -----------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh----c-------cCCCCeEEEEeCCCCCCCCCC
Q 036857 67 -----------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW----S-------SSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 67 -----------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~----~-------~~~~~~~vi~tTN~~~~lD~A 124 (170)
....|+|+||+|.+.... .....+.|++.+|.-. . ..-.++++|+|||..+ |++|
T Consensus 404 G~~~~~l~~~~~~~~villDEidk~~~~~--~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~a 480 (784)
T PRK10787 404 GKLIQKMAKVGVKNPLFLLDEIDKMSSDM--RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAP 480 (784)
T ss_pred cHHHHHHHhcCCCCCEEEEEChhhccccc--CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHH
Confidence 014589999999997632 2345678888887411 0 0015789999999884 9999
Q ss_pred CCCCCccceEEEcCCCCc
Q 036857 125 PLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~ 142 (170)
|+. |++. |.|..++.
T Consensus 481 Ll~--R~~i-i~~~~~t~ 495 (784)
T PRK10787 481 LLD--RMEV-IRLSGYTE 495 (784)
T ss_pred Hhc--ceee-eecCCCCH
Confidence 995 9974 66666555
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=7.4e-10 Score=100.86 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
...+|.+|+++++++.+++.|...+ || ||+|||++|+++| .+
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 3568999999999999998887766 69 9999999999999 11
Q ss_pred -cccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... ...|++|||+|.+. ....+.|+..++.. +..+++|++|+
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------~~a~naLLK~LEep----p~~~vfI~~tt 157 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------NSAFNALLKTIEEP----PPYIVFIFATT 157 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------HHHHHHHHHhhccC----CCCEEEEEecC
Confidence 11111111 05699999998772 34567788877753 45788888888
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+.+++.. |+. .++|..++.
T Consensus 158 e~~kL~~tI~S--Rc~-~~~f~~l~~ 180 (563)
T PRK06647 158 EVHKLPATIKS--RCQ-HFNFRLLSL 180 (563)
T ss_pred ChHHhHHHHHH--hce-EEEecCCCH
Confidence 88999999875 554 577877766
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.06 E-value=7.2e-10 Score=103.49 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=72.0
Q ss_pred cCCCCCCCCcccccCChhhHH---HhhcCc----------cc-CCCcHHHHHHHHH---ccc----------ccccc---
Q 036857 16 SNKFEHPATSNTIATDFDMNK---ALVDDY----------WG-PYTGKSSLIAAMA---DLD----------LKEFQ--- 65 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~---~l~~~~----------~G-PGtGKT~la~aiA---~~~----------l~~v~--- 65 (170)
.....+|.+|+++++++.... .+...+ || ||||||++|+++| ... +..+.
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i 97 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEV 97 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHH
Confidence 345678999999999988653 232222 89 9999999999999 111 10100
Q ss_pred ---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceE
Q 036857 66 ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMH 134 (170)
Q Consensus 66 ---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~ 134 (170)
.....+|||||+|.+.. .....|+..++. ..+++|++| |....++++++.++ ..
T Consensus 98 ~~a~~~l~~~~~~~IL~IDEIh~Ln~------~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~SR~---~v 162 (725)
T PRK13341 98 DRAKERLERHGKRTILFIDEVHRFNK------AQQDALLPWVEN------GTITLIGATTENPYFEVNKALVSRS---RL 162 (725)
T ss_pred HHHHHHhhhcCCceEEEEeChhhCCH------HHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhccc---cc
Confidence 01256999999998743 223455554432 245555544 45567999998634 35
Q ss_pred EEcCCCCc
Q 036857 135 FHLSSHTF 142 (170)
Q Consensus 135 i~~~~p~~ 142 (170)
++|+.++.
T Consensus 163 ~~l~pLs~ 170 (725)
T PRK13341 163 FRLKSLSD 170 (725)
T ss_pred eecCCCCH
Confidence 78888776
No 103
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.3e-09 Score=91.48 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccccC-----------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQSNS----------- 68 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~~~----------- 68 (170)
..+|..|++-++++.+|+++.-.+ || ||.|||+||..|| ..++.......
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL 98 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH
Confidence 567999999999999999886544 79 9999999999999 33433332221
Q ss_pred -----ceeEeeechhhhccCCccchHHHHHH-HHHhhc-----hhccCC---------CCeEEEEeCCCCCCCCCCCCCC
Q 036857 69 -----RSILVIEDAVTSFESNAYNSVALSAL-LKFVDG-----LWSSSG---------DGRILVMTTDYKDHIDPVPLRP 128 (170)
Q Consensus 69 -----p~il~iDEiD~~~~~~~~~~~~~~~l-l~~lDg-----~~~~~~---------~~~~vi~tTN~~~~lD~AllRp 128 (170)
..|+|+|||..+.+ .+.++ -.+|+. +....+ ...-+|+||-+...|-.-|.
T Consensus 99 t~Le~~DVLFIDEIHrl~~-------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr-- 169 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSP-------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR-- 169 (332)
T ss_pred hcCCcCCeEEEehhhhcCh-------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH--
Confidence 88999999988754 12222 233331 111100 14568999999999988887
Q ss_pred CccceEEEcCCCCc
Q 036857 129 SCMDMHFHLSSHTF 142 (170)
Q Consensus 129 gR~d~~i~~~~p~~ 142 (170)
.||....++.+-+.
T Consensus 170 dRFGi~~rlefY~~ 183 (332)
T COG2255 170 DRFGIIQRLEFYTV 183 (332)
T ss_pred HhcCCeeeeecCCH
Confidence 69998888887666
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=5.9e-10 Score=97.37 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=79.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL----------------------- 61 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l----------------------- 61 (170)
....|.+|+++++++.+++.|...+ || ||||||++|+++| .+..
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c 87 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESC 87 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHH
Confidence 4678999999999999998887665 79 9999999999999 2211
Q ss_pred -----------ccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857 62 -----------KEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG 108 (170)
Q Consensus 62 -----------~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~ 108 (170)
..+.... ..|+|+||+|.+.. ...+.|+..++.. +..
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------~~~~~LLk~LEep----~~~ 157 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------AAFNAFLKTLEEP----PPH 157 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------HHHHHHHHHHhcC----CCC
Confidence 1111100 56999999987732 3456677777643 346
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++|++|+.++.+-+++.+ |.. .++|..++.
T Consensus 158 t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~ 188 (397)
T PRK14955 158 AIFIFATTELHKIPATIAS--RCQ-RFNFKRIPL 188 (397)
T ss_pred eEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCH
Confidence 6677777777888888775 443 577777765
No 105
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.03 E-value=4.8e-10 Score=92.79 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=46.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh----cc--------CCCCeEEEEeCCCC-----CCCCCCCCCCCcc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW----SS--------SGDGRILVMTTDYK-----DHIDPVPLRPSCM 131 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~----~~--------~~~~~~vi~tTN~~-----~~lD~AllRpgR~ 131 (170)
+.++++||+|.. .....+.|+..|+.-. .. ...+..+|+|+|.. ..+++|+++ ||
T Consensus 106 g~~lllDEi~r~------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~ 177 (262)
T TIGR02640 106 GFTLVYDEFTRS------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL 177 (262)
T ss_pred CCEEEEcchhhC------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc
Confidence 479999999975 2345666777765321 00 01256799999975 367999997 87
Q ss_pred ceEEEcCCCCc
Q 036857 132 DMHFHLSSHTF 142 (170)
Q Consensus 132 d~~i~~~~p~~ 142 (170)
..+++++|+.
T Consensus 178 -~~i~i~~P~~ 187 (262)
T TIGR02640 178 -ITIFMDYPDI 187 (262)
T ss_pred -EEEECCCCCH
Confidence 7899999998
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.03 E-value=6.1e-10 Score=105.29 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=74.2
Q ss_pred CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccc---------
Q 036857 24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQ--------- 65 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~--------- 65 (170)
.++.+++.+..-+++...+ +| ||||||++|+++| .+++..+.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 4677787777777776655 79 9999999999999 11111111
Q ss_pred ------------ccCceeEeeechhhhccCCc-cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857 66 ------------SNSRSILVIEDAVTSFESNA-YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLR 127 (170)
Q Consensus 66 ------------~~~p~il~iDEiD~~~~~~~-~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllR 127 (170)
...++||||||++.+++.+. ......+.+|. .... .+.+.+|++|+..+ ..|+++.|
T Consensus 257 e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk---p~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 257 EERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK---PALA--RGELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH---HHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 01178999999999987332 11222333333 1111 35778888888654 58999998
Q ss_pred CCccceEEEcCCCCc
Q 036857 128 PSCMDMHFHLSSHTF 142 (170)
Q Consensus 128 pgR~d~~i~~~~p~~ 142 (170)
||.. |.+..|+.
T Consensus 332 --Rf~~-I~v~ep~~ 343 (821)
T CHL00095 332 --RFQP-VYVGEPSV 343 (821)
T ss_pred --cceE-EecCCCCH
Confidence 9975 78888887
No 107
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.9e-09 Score=97.59 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=84.0
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
...+|.+|+++++++.+++.|...+ || ||+|||++|+++| .+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 3678999999999999998887665 69 9999999999999 11
Q ss_pred -cccccccc-----------------C-----ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQSN-----------------S-----RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~~-----------------~-----p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+... . ..|++|||+|.+ .....+.||..|+.. +..+.+|++|+
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L------t~~A~NALLK~LEEp----p~~t~FIL~tt 155 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML------TKEAFNALLKTLEEP----PSYVKFILATT 155 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC------CHHHHHHHHHHHhhc----CCceEEEEEEC
Confidence 11111100 0 459999999877 335567888887765 34677777778
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+..|.+++.. |. .+++|..++.
T Consensus 156 d~~kL~~tI~S--Rc-~~~~F~~Ls~ 178 (535)
T PRK08451 156 DPLKLPATILS--RT-QHFRFKQIPQ 178 (535)
T ss_pred ChhhCchHHHh--hc-eeEEcCCCCH
Confidence 88999999886 63 5889988876
No 108
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.03 E-value=1.6e-09 Score=98.09 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=76.9
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHHc-------------cccccccc-------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMAD-------------LDLKEFQS------- 66 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA~-------------~~l~~v~~------- 66 (170)
...+|.+|+++++.....+.+...+ || ||||||++||+++. ..+..+..
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~ 136 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDE 136 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCc
Confidence 4678899999999998887776544 79 99999999999951 00111100
Q ss_pred -------------------------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------
Q 036857 67 -------------------------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW------- 102 (170)
Q Consensus 67 -------------------------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~------- 102 (170)
....+|||||+|.+-. ...+.|+..|+.-.
T Consensus 137 ~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~------~~q~~LL~~Le~~~~~~~~~~ 210 (531)
T TIGR02902 137 RGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP------VQMNKLLKVLEDRKVFLDSAY 210 (531)
T ss_pred cccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH------HHHHHHHHHHHhCeeeecccc
Confidence 0036999999998743 34555665553210
Q ss_pred -----------------ccCCCC-eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 103 -----------------SSSGDG-RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 103 -----------------~~~~~~-~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
...+.+ +++++|||.++.++||+++ |+. .|.|+.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ 265 (531)
T TIGR02902 211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLD 265 (531)
T ss_pred ccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCH
Confidence 000122 4566777899999999997 764 667766654
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.01 E-value=3e-09 Score=85.49 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCCCCCCCcccccC--ChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH------ccccccccc----------
Q 036857 17 NKFEHPATSNTIAT--DFDMNKALVDDY-----------WG-PYTGKSSLIAAMA------DLDLKEFQS---------- 66 (170)
Q Consensus 17 ~~~~~p~~~~~v~~--~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA------~~~l~~v~~---------- 66 (170)
.+...|.+|++.+. +......+.... || ||||||++|++++ +..+..+..
T Consensus 9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 88 (227)
T PRK08903 9 LGPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFD 88 (227)
T ss_pred CCCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhc
Confidence 44556667888762 233333333221 69 9999999999999 111111111
Q ss_pred cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCcc--ceEEEcCCCC
Q 036857 67 NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCM--DMHFHLSSHT 141 (170)
Q Consensus 67 ~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~--d~~i~~~~p~ 141 (170)
....+|++||+|.+.. .....+...++.... ....++++|++.+. .+.+.+.. |+ ...++++.|+
T Consensus 89 ~~~~~liiDdi~~l~~------~~~~~L~~~~~~~~~--~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~ 158 (227)
T PRK08903 89 PEAELYAVDDVERLDD------AQQIALFNLFNRVRA--HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLS 158 (227)
T ss_pred ccCCEEEEeChhhcCc------hHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCC
Confidence 1267999999997632 123445555655543 22334556665332 23344442 66 5799999999
Q ss_pred cchHHHHHHHHHhh--cCCCCHHHH
Q 036857 142 FRHYLFEKIEERLA--KIQATPAEV 164 (170)
Q Consensus 142 ~~~~l~~~~~~~~~--~~~~s~a~i 164 (170)
.+. ....+.+... ...++++.+
T Consensus 159 ~~~-~~~~l~~~~~~~~v~l~~~al 182 (227)
T PRK08903 159 DAD-KIAALKAAAAERGLQLADEVP 182 (227)
T ss_pred HHH-HHHHHHHHHHHcCCCCCHHHH
Confidence 842 3333433332 234555433
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.8e-09 Score=98.94 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=84.6
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccccc--------------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDLK-------------------- 62 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l~-------------------- 62 (170)
......|.+|+++++++.+++.|...+ +| ||+|||++|+++| .++..
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 335678999999999999999887765 69 9999999999999 22110
Q ss_pred -----------ccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCe
Q 036857 63 -----------EFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGR 109 (170)
Q Consensus 63 -----------~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~ 109 (170)
.+... ...|++|||+|.+. ....+.|+..|+.. +..+
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------~~a~naLLKtLEeP----p~~~ 163 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------TAAFNALLKTLEEP----PPHV 163 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------HHHHHHHHHHHHhC----CCCe
Confidence 00000 05699999998773 34567788777664 4577
Q ss_pred EEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 110 ILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 110 ~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++|++|+.++.+.+.+.. |+ ..++|..++.
T Consensus 164 ~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~ 193 (598)
T PRK09111 164 KFIFATTEIRKVPVTVLS--RC-QRFDLRRIEA 193 (598)
T ss_pred EEEEEeCChhhhhHHHHh--he-eEEEecCCCH
Confidence 888888888888888764 55 5788888876
No 111
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.01 E-value=1.6e-09 Score=78.41 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=58.2
Q ss_pred cc-CCCcHHHHHHHHH-cc---c-------cc----------------------cccccCceeEeeechhhhccCCccch
Q 036857 43 WG-PYTGKSSLIAAMA-DL---D-------LK----------------------EFQSNSRSILVIEDAVTSFESNAYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~---~-------l~----------------------~v~~~~p~il~iDEiD~~~~~~~~~~ 88 (170)
+| ||||||++++.++ .. + .. ......+.++++||++.+..
T Consensus 25 ~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~------ 98 (151)
T cd00009 25 YGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR------ 98 (151)
T ss_pred ECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH------
Confidence 79 9999999999999 11 0 00 00111289999999987621
Q ss_pred HHHHHHHHHhhchhcc--CCCCeEEEEeCCCCC--CCCCCCCCCCccceEEEcC
Q 036857 89 VALSALLKFVDGLWSS--SGDGRILVMTTDYKD--HIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~--~~~~~~vi~tTN~~~--~lD~AllRpgR~d~~i~~~ 138 (170)
.....++..+...... ...++.+|++||... .+++.+.. |++.+++++
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 2234455555444321 025788899999877 67777774 999888876
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.6e-09 Score=97.18 Aligned_cols=112 Identities=23% Similarity=0.248 Sum_probs=81.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
...+|.+|+++++++.+.+.+...+ || ||+|||++|+.+| .++
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence 3678999999999999988876666 69 9999999999999 221
Q ss_pred --cccccc---c-------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 61 --LKEFQS---N-------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 61 --l~~v~~---~-------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+..+.. . ...|+++||+|.+. ....+.|+..++.. +..+++|++|+
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------~~a~naLLk~LEep----p~~~v~Il~tt 157 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------KEAFNALLKTLEEP----PPRTIFILCTT 157 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------HHHHHHHHHHHhcC----CCCeEEEEEEC
Confidence 111100 0 05799999999773 23457777777654 34667777778
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+++++.+ |+ ..+.|..++.
T Consensus 158 ~~~kl~~tI~S--Rc-~~i~f~~ls~ 180 (486)
T PRK14953 158 EYDKIPPTILS--RC-QRFIFSKPTK 180 (486)
T ss_pred CHHHHHHHHHH--hc-eEEEcCCCCH
Confidence 88889888876 54 3688887766
No 113
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.99 E-value=8.3e-11 Score=101.78 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=64.7
Q ss_pred CCCCCCCcccccCChhhHHH---hhcCc----------cc-CCCcHHHHHHHHH------c---cccc----------cc
Q 036857 18 KFEHPATSNTIATDFDMNKA---LVDDY----------WG-PYTGKSSLIAAMA------D---LDLK----------EF 64 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~---l~~~~----------~G-PGtGKT~la~aiA------~---~~l~----------~v 64 (170)
+..+|.++++.+++.++-.+ |...+ || ||||||++||.|| . +.++ .+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHH
Confidence 56678888888887765322 11111 99 9999999999999 1 1111 12
Q ss_pred cccC---------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccc
Q 036857 65 QSNS---------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMD 132 (170)
Q Consensus 65 ~~~~---------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d 132 (170)
+.++ ..|||||||..+-. .....||-.++ ...+.+|.+| |.--.|..||+.++|+-
T Consensus 210 fe~aq~~~~l~krkTilFiDEiHRFNk------sQQD~fLP~VE------~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 210 FEQAQNEKSLTKRKTILFIDEIHRFNK------SQQDTFLPHVE------NGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred HHHHHHHHhhhcceeEEEeHHhhhhhh------hhhhcccceec------cCceEEEecccCCCccchhHHHHhcccee
Confidence 1111 89999999988743 11222333221 2356666655 56679999999766653
No 114
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.99 E-value=2.2e-09 Score=92.22 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=49.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~ 138 (170)
..+||+||++.+ .....+.|++.|+ |.....+..+++++|+|..+ .++++++. ||.+++.++
T Consensus 132 ~GvL~lDEi~~L------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~ 203 (337)
T TIGR02030 132 RGILYIDEVNLL------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIR 203 (337)
T ss_pred CCEEEecChHhC------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECC
Confidence 479999999976 3355667777764 22222345678888888665 78999996 999999999
Q ss_pred CCCc
Q 036857 139 SHTF 142 (170)
Q Consensus 139 ~p~~ 142 (170)
+|+.
T Consensus 204 ~p~~ 207 (337)
T TIGR02030 204 TVRD 207 (337)
T ss_pred CCCC
Confidence 9987
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99 E-value=2.4e-09 Score=85.37 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=75.0
Q ss_pred CCCCCCCCcccccC--ChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----ccc-----ccccc------
Q 036857 17 NKFEHPATSNTIAT--DFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----LDL-----KEFQS------ 66 (170)
Q Consensus 17 ~~~~~p~~~~~v~~--~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----~~l-----~~v~~------ 66 (170)
++...+.+|++.+. +....+.+...+ || ||||||++|++++ . ..+ ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVL 85 (226)
T ss_pred CCCCCchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHH
Confidence 34455566777763 222333333322 69 9999999999999 1 111 11111
Q ss_pred ---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCCC---CCCCCCCcc--ceEEEc
Q 036857 67 ---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHID---PVPLRPSCM--DMHFHL 137 (170)
Q Consensus 67 ---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~lD---~AllRpgR~--d~~i~~ 137 (170)
..+.+|+|||+|.+.... .....+...++.... .+..+|+||| .+..++ +.+.+ |+ ...+++
T Consensus 86 ~~~~~~~lLvIDdi~~l~~~~----~~~~~L~~~l~~~~~---~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 86 EGLEQADLVCLDDVEAIAGQP----EWQEALFHLYNRVRE---AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred hhcccCCEEEEeChhhhcCCh----HHHHHHHHHHHHHHH---cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 125699999999874421 113445555555443 1234555665 444433 55664 55 578899
Q ss_pred CCCCcchHHHHHHHHHhh--cCCCCHHHH
Q 036857 138 SSHTFRHYLFEKIEERLA--KIQATPAEV 164 (170)
Q Consensus 138 ~~p~~~~~l~~~~~~~~~--~~~~s~a~i 164 (170)
+.|+. .+....+...+. ...++++.+
T Consensus 157 ~~l~~-~e~~~~l~~~~~~~~~~~~~~~l 184 (226)
T TIGR03420 157 PPLSD-EEKIAALQSRAARRGLQLPDEVA 184 (226)
T ss_pred CCCCH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 98888 333333333332 224555544
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.97 E-value=2.4e-09 Score=100.47 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=64.4
Q ss_pred cc-CCCcHHHHHHHHH--------ccccccc---------cc--------------------cCceeEeeechhhhccCC
Q 036857 43 WG-PYTGKSSLIAAMA--------DLDLKEF---------QS--------------------NSRSILVIEDAVTSFESN 84 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA--------~~~l~~v---------~~--------------------~~p~il~iDEiD~~~~~~ 84 (170)
+| ||||||.+|+++| .++++.. .. +..+||||||+|...
T Consensus 494 ~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~--- 570 (758)
T PRK11034 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--- 570 (758)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh---
Confidence 49 9999999999999 1222211 10 115899999999873
Q ss_pred ccchHHHHHHHHHhhch-hccC------CCCeEEEEeCCCC-------------------------CCCCCCCCCCCccc
Q 036857 85 AYNSVALSALLKFVDGL-WSSS------GDGRILVMTTDYK-------------------------DHIDPVPLRPSCMD 132 (170)
Q Consensus 85 ~~~~~~~~~ll~~lDg~-~~~~------~~~~~vi~tTN~~-------------------------~~lD~AllRpgR~d 132 (170)
....+.|++.||.- .... -.++++|+|||.- ..+.|+|+ +|+|
T Consensus 571 ---~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl--~Rid 645 (758)
T PRK11034 571 ---PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFR--NRLD 645 (758)
T ss_pred ---HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHH--ccCC
Confidence 35678888888732 2110 1377899999921 12557777 5999
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
..|.|...+.
T Consensus 646 ~ii~f~~L~~ 655 (758)
T PRK11034 646 NIIWFDHLST 655 (758)
T ss_pred EEEEcCCCCH
Confidence 9999999888
No 117
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.3e-09 Score=97.76 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=82.6
Q ss_pred ccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH---cc---------cccc---------------cc
Q 036857 26 NTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA---DL---------DLKE---------------FQ 65 (170)
Q Consensus 26 ~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA---~~---------~l~~---------------v~ 65 (170)
.+.+..+..|+...+.. +| +|||||.|+++++ .. +.+. ++
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf 487 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF 487 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH
Confidence 66666776666654322 69 9999999999999 11 1111 11
Q ss_pred cc----CceeEeeechhhhcc----CCccc---hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceE
Q 036857 66 SN----SRSILVIEDAVTSFE----SNAYN---SVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMH 134 (170)
Q Consensus 66 ~~----~p~il~iDEiD~~~~----~~~~~---~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~ 134 (170)
.. +|+||++|++|++++ ++++. ...+..+++++--.....+..+.+|+|.+....+.|-|.-|++|+.+
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 11 199999999999998 12222 23345556554333333345568999999999999999999999999
Q ss_pred EEcCCCCc
Q 036857 135 FHLSSHTF 142 (170)
Q Consensus 135 i~~~~p~~ 142 (170)
+.++.|+.
T Consensus 568 ~~L~ap~~ 575 (952)
T KOG0735|consen 568 IALPAPAV 575 (952)
T ss_pred EecCCcch
Confidence 99999999
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=4.4e-09 Score=96.81 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=82.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
....|..|+++++++.+++.|...+ || ||||||++|+++| .+.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG 87 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence 4668899999999999998876654 69 9999999999999 111
Q ss_pred ----cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 61 ----LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 61 ----l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+..+.... ..|++|||+|.+- ....+.||..|+.- +..+++|++
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------~~a~naLLK~LEeP----p~~tvfIL~ 157 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------TAAFNALLKTLEEP----PPRVVFVLA 157 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------HHHHHHHHHHHhcC----CcCeEEEEE
Confidence 11111100 4699999999772 34567888888854 457778888
Q ss_pred CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 115 TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+.++.+-++++. |+ ..++|..++.
T Consensus 158 t~~~~~llpTIrS--Rc-~~~~f~~l~~ 182 (620)
T PRK14948 158 TTDPQRVLPTIIS--RC-QRFDFRRIPL 182 (620)
T ss_pred eCChhhhhHHHHh--he-eEEEecCCCH
Confidence 8888888888874 54 4577777665
No 119
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.95 E-value=1.9e-09 Score=93.12 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH----ccc------c--------------------
Q 036857 23 ATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA----DLD------L-------------------- 61 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA----~~~------l-------------------- 61 (170)
-+|.+++++++.|..|...+ .| +|||||++||+++ ... +
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 38999999999999987665 59 9999999999997 100 0
Q ss_pred -----------c--c---------ccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHH
Q 036857 62 -----------K--E---------FQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKF 97 (170)
Q Consensus 62 -----------~--~---------v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~ 97 (170)
. . +.. ....+||+||++.+- ....+.|++.
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~------~~~Q~~LLea 167 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD------DHLVDILLDS 167 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC------HHHHHHHHHH
Confidence 0 0 000 005799999998763 3556667777
Q ss_pred hhc---------hhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857 98 VDG---------LWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 98 lDg---------~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+. .....+..+++++|.|..+ .+.++++. ||.+++.+++|+.
T Consensus 168 m~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 168 AASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred HHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 643 3222345678888888666 68999986 9999999999985
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=4.4e-09 Score=96.16 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=81.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD------------------------ 60 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~------------------------ 60 (170)
....|.+|+++++++.+++.|...+ || ||+|||++|+++| .+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 4678999999999999999887655 69 9999999999999 111
Q ss_pred ---cccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 61 ---LKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 61 ---l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+..+.. ....|+||||+|.+. ....+.|+..|+.. +...++|++|
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------~~a~naLLk~LEep----p~~tv~Il~t 157 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------TAAFNALLKTLEEP----PPHAIFILAT 157 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------HHHHHHHHHHHhcC----CCCeEEEEEe
Confidence 100110 006699999999773 24467788877765 3467777778
Q ss_pred CCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 116 DYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 116 N~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+..+.+.+.+.. |+ ..++|..++.
T Consensus 158 ~~~~kll~tI~S--R~-~~i~f~~l~~ 181 (585)
T PRK14950 158 TEVHKVPATILS--RC-QRFDFHRHSV 181 (585)
T ss_pred CChhhhhHHHHh--cc-ceeeCCCCCH
Confidence 888888888764 44 3577877666
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.94 E-value=3.7e-09 Score=93.06 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=48.7
Q ss_pred cc-CCCcHHHHHHHHH---cc-----cccccc-------------------------ccCceeEeeechhhhccCCc---
Q 036857 43 WG-PYTGKSSLIAAMA---DL-----DLKEFQ-------------------------SNSRSILVIEDAVTSFESNA--- 85 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~-----~l~~v~-------------------------~~~p~il~iDEiD~~~~~~~--- 85 (170)
+| ||||||++|+++| .. +...+. ...++||||||||.+.....
T Consensus 114 ~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~ 193 (412)
T PRK05342 114 IGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS 193 (412)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC
Confidence 69 9999999999999 11 111110 01279999999999976311
Q ss_pred -----cchHHHHHHHHHhhchhcc---------CCCCeEEEEeCCC
Q 036857 86 -----YNSVALSALLKFVDGLWSS---------SGDGRILVMTTDY 117 (170)
Q Consensus 86 -----~~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN~ 117 (170)
....+.+.||+.|||.... ...+.++|+|+|-
T Consensus 194 ~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 194 ITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 1124678899999975311 0124577778775
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=6.4e-09 Score=95.71 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=81.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cccc-----------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLDL----------------------- 61 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~l----------------------- 61 (170)
...+|.+|+++++++.+++.|...+ || ||||||++|+++| .+..
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 3568999999999999999887755 69 9999999999999 2211
Q ss_pred -----------ccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857 62 -----------KEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG 108 (170)
Q Consensus 62 -----------~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~ 108 (170)
..+.... ..|++|||+|.+.. ...+.|+..|+.. +..
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------~a~naLLK~LEeP----p~~ 157 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------AAFNAFLKTLEEP----PPH 157 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------HHHHHHHHHHhCC----CCC
Confidence 1111100 56899999987732 3467788877665 346
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++|++|+.++.|-+++.. |. ..++|..++.
T Consensus 158 tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 158 AIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred eEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 6777777778888888875 33 5788888776
No 123
>PRK08727 hypothetical protein; Validated
Probab=98.90 E-value=1e-08 Score=83.50 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCCCCCCCcccccCChhhH-HH---h-hc----Cc--cc-CCCcHHHHHHHHH----ccccccccc--------------
Q 036857 17 NKFEHPATSNTIATDFDMN-KA---L-VD----DY--WG-PYTGKSSLIAAMA----DLDLKEFQS-------------- 66 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k-~~---l-~~----~~--~G-PGtGKT~la~aiA----~~~l~~v~~-------------- 66 (170)
++.....+|++-+..+.-. .. + .. .+ || ||||||.+++|++ +.+...++.
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 89 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALE 89 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHH
Confidence 3445555777776555221 11 1 10 11 79 9999999999997 111111110
Q ss_pred --cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC---CCCCCCCCcc--ceEEEcC
Q 036857 67 --NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI---DPVPLRPSCM--DMHFHLS 138 (170)
Q Consensus 67 --~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l---D~AllRpgR~--d~~i~~~ 138 (170)
....+|+|||+|.+..... ....+...++.... .+.-+|+|+| .|..+ ++++.+ || ...++++
T Consensus 90 ~l~~~dlLiIDDi~~l~~~~~----~~~~lf~l~n~~~~---~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~ 160 (233)
T PRK08727 90 ALEGRSLVALDGLESIAGQRE----DEVALFDFHNRARA---AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLP 160 (233)
T ss_pred HHhcCCEEEEeCcccccCChH----HHHHHHHHHHHHHH---cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEec
Confidence 1167999999998765322 22344455555543 2444556555 66655 788886 76 5788888
Q ss_pred CCCc
Q 036857 139 SHTF 142 (170)
Q Consensus 139 ~p~~ 142 (170)
.|+.
T Consensus 161 ~~~~ 164 (233)
T PRK08727 161 VLDD 164 (233)
T ss_pred CCCH
Confidence 8887
No 124
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.6e-09 Score=95.40 Aligned_cols=97 Identities=28% Similarity=0.385 Sum_probs=79.0
Q ss_pred cc-CCCcHHHHHHHHHccc--c-----ccccc-------------------cCceeEeeechhhhccCCc-----cchHH
Q 036857 43 WG-PYTGKSSLIAAMADLD--L-----KEFQS-------------------NSRSILVIEDAVTSFESNA-----YNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~--l-----~~v~~-------------------~~p~il~iDEiD~~~~~~~-----~~~~~ 90 (170)
+| ||||||++++++|..+ . ..+.. .+|+++++||+|.+.+.+. .....
T Consensus 24 ~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v 103 (494)
T COG0464 24 HGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRV 103 (494)
T ss_pred eCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccccccchhhHH
Confidence 69 9999999999998211 0 10000 1189999999999998332 34567
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++++..+|++. ... ++++..||.+..+|+|+.|||||+..+++..|+.
T Consensus 104 ~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 104 VAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred HHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 899999999998 356 8899999999999999999999999999999999
No 125
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.88 E-value=7.2e-09 Score=91.25 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=49.4
Q ss_pred cc-CCCcHHHHHHHHH-cc--ccc-----cc------c-------------------ccCceeEeeechhhhccCCcc--
Q 036857 43 WG-PYTGKSSLIAAMA-DL--DLK-----EF------Q-------------------SNSRSILVIEDAVTSFESNAY-- 86 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~--~l~-----~v------~-------------------~~~p~il~iDEiD~~~~~~~~-- 86 (170)
+| ||||||++|+++| .+ .+. .+ . ...++||||||+|.+......
T Consensus 122 ~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s 201 (413)
T TIGR00382 122 IGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS 201 (413)
T ss_pred ECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc
Confidence 59 9999999999999 11 111 00 0 011679999999999862211
Q ss_pred ------chHHHHHHHHHhhchhcc---------CCCCeEEEEeCCC
Q 036857 87 ------NSVALSALLKFVDGLWSS---------SGDGRILVMTTDY 117 (170)
Q Consensus 87 ------~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN~ 117 (170)
...+.+.||+.|||.... ...+.++|+|+|-
T Consensus 202 ~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 202 ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred ccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 114778899999886421 0135688999885
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.87 E-value=7.7e-09 Score=96.74 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=64.1
Q ss_pred cc-CCCcHHHHHHHHH--------ccccccccc-----------------------------cCceeEeeechhhhccCC
Q 036857 43 WG-PYTGKSSLIAAMA--------DLDLKEFQS-----------------------------NSRSILVIEDAVTSFESN 84 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA--------~~~l~~v~~-----------------------------~~p~il~iDEiD~~~~~~ 84 (170)
+| ||||||++|+++| .++++.... +..+||||||+|...
T Consensus 490 ~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~--- 566 (731)
T TIGR02639 490 TGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH--- 566 (731)
T ss_pred ECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC---
Confidence 59 9999999999999 122222111 116899999999763
Q ss_pred ccchHHHHHHHHHhhchhcc--C-----CCCeEEEEeCCCCC-------------------------CCCCCCCCCCccc
Q 036857 85 AYNSVALSALLKFVDGLWSS--S-----GDGRILVMTTDYKD-------------------------HIDPVPLRPSCMD 132 (170)
Q Consensus 85 ~~~~~~~~~ll~~lDg~~~~--~-----~~~~~vi~tTN~~~-------------------------~lD~AllRpgR~d 132 (170)
....+.|++.+|.-.-. . -.+.++|+|||.-. .+.|.|+ +|+|
T Consensus 567 ---~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid 641 (731)
T TIGR02639 567 ---PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLD 641 (731)
T ss_pred ---HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCC
Confidence 35677888888753210 0 13678999999531 2466666 6999
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
..|.|...+.
T Consensus 642 ~Vi~F~pLs~ 651 (731)
T TIGR02639 642 AIIHFNPLSE 651 (731)
T ss_pred eEEEcCCCCH
Confidence 9999999888
No 127
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.86 E-value=4.8e-09 Score=84.44 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=58.0
Q ss_pred CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH----------cccccccc---c---c-----------
Q 036857 24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA----------DLDLKEFQ---S---N----------- 67 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA----------~~~l~~v~---~---~----------- 67 (170)
.|.+|.+++..|+.+.-.. +| |||||||+|++++ .+++..+. . .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~ 80 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRA 80 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEE
T ss_pred ChhhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCccc
Confidence 3789999999999887555 69 9999999999999 11222111 1 0
Q ss_pred -------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhch---------hccCCCCeEEEE
Q 036857 68 -------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGL---------WSSSGDGRILVM 113 (170)
Q Consensus 68 -------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~---------~~~~~~~~~vi~ 113 (170)
...|||+||+-.+ ....+..|++.|+.- .-..+.+.++|+
T Consensus 81 phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~ 154 (206)
T PF01078_consen 81 PHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA 154 (206)
T ss_dssp E-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred CCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence 0889999999543 567777777777522 222345778999
Q ss_pred eCC
Q 036857 114 TTD 116 (170)
Q Consensus 114 tTN 116 (170)
|+|
T Consensus 155 a~N 157 (206)
T PF01078_consen 155 AMN 157 (206)
T ss_dssp EE-
T ss_pred Eec
Confidence 988
No 128
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.84 E-value=2.5e-08 Score=81.30 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCCCCCCcccccCC--hhhHHHhhcCc----------cc-CCCcHHHHHHHHH----cc----ccccccc---c------
Q 036857 18 KFEHPATSNTIATD--FDMNKALVDDY----------WG-PYTGKSSLIAAMA----DL----DLKEFQS---N------ 67 (170)
Q Consensus 18 ~~~~p~~~~~v~~~--~~~k~~l~~~~----------~G-PGtGKT~la~aiA----~~----~l~~v~~---~------ 67 (170)
...+..+|++.+.. ......+.... || ||||||+++++++ .. .+..+.. .
T Consensus 14 ~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~ 93 (235)
T PRK08084 14 YLPDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLE 93 (235)
T ss_pred CCCCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHH
Confidence 34555578877633 33333332211 79 9999999999999 11 1111100 0
Q ss_pred ---CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCC
Q 036857 68 ---SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSS 139 (170)
Q Consensus 68 ---~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~ 139 (170)
...+|+|||++.+.+. ......+...++...+. +...+++.+++.+.. +.|.+.. |+. ..+++..
T Consensus 94 ~~~~~dlliiDdi~~~~~~----~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~ 166 (235)
T PRK08084 94 GMEQLSLVCIDNIECIAGD----ELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQP 166 (235)
T ss_pred HhhhCCEEEEeChhhhcCC----HHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecC
Confidence 0358999999987542 22233344455554431 222455555556665 5788875 876 8889999
Q ss_pred CCc
Q 036857 140 HTF 142 (170)
Q Consensus 140 p~~ 142 (170)
|+.
T Consensus 167 ~~~ 169 (235)
T PRK08084 167 LSD 169 (235)
T ss_pred CCH
Confidence 876
No 129
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.83 E-value=3.1e-08 Score=89.24 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred cc-CCCcHHHHHHHHHcc------------c---c--ccccc---------------cCceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMADL------------D---L--KEFQS---------------NSRSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~------------~---l--~~v~~---------------~~p~il~iDEiD~~~~~~~~~~~ 89 (170)
+| ||||||++||+++.+ . + ..+.. ....++++||+|.+- ..
T Consensus 242 ~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~------~~ 315 (509)
T smart00350 242 LGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD------DS 315 (509)
T ss_pred eCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCC------HH
Confidence 59 999999999999910 0 1 00011 016799999999873 24
Q ss_pred HHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEc-CCCCc
Q 036857 90 ALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHL-SSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~-~~p~~ 142 (170)
..+.|++.|+ |.....+....+|+|+|..+ .|+++++. |||+.+.+ ++|+.
T Consensus 316 ~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~ 389 (509)
T smart00350 316 DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDE 389 (509)
T ss_pred HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCCh
Confidence 4555666663 32222345778999999764 59999996 99987665 67777
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.82 E-value=1.2e-08 Score=90.32 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=60.5
Q ss_pred cc-CCCcHHHHHHHHH-c---c--ccccccc-------------------------cCceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA-D---L--DLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~---~--~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| ||||||+|++++| . . +...++. ..+.+|+|||+|.+.+. ...
T Consensus 154 ~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----~~~ 229 (450)
T PRK00149 154 YGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK----ERT 229 (450)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC----HHH
Confidence 79 9999999999999 1 1 1111110 01679999999988552 223
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
...++..++.+... ...++|.+++.|.. +++.+. .||. ..+++..|+.
T Consensus 230 ~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~--SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 230 QEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLR--SRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHH--hHhcCCeeEEecCCCH
Confidence 45677777777652 23344444445554 677877 4886 6899999998
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.6e-08 Score=91.65 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-ccc-----------------------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DLD----------------------- 60 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~~----------------------- 60 (170)
.....|.+|++|++++.+++.|...+ || ||+|||++|+++| .+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 34678999999999999998887766 69 9999999999999 221
Q ss_pred ----ccccccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 61 ----LKEFQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 61 ----l~~v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+..+... ..-|++|||+|.+. ....+.|+..|+.. +...++|++
T Consensus 88 ~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------~~a~naLLK~LEep----p~~tifIL~ 157 (614)
T PRK14971 88 RSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------QAAFNAFLKTLEEP----PSYAIFILA 157 (614)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------HHHHHHHHHHHhCC----CCCeEEEEE
Confidence 1111100 04589999998772 34567788888765 356777787
Q ss_pred CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 115 TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 115 TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+..+.|-+++.. |. ..++|..++.
T Consensus 158 tt~~~kIl~tI~S--Rc-~iv~f~~ls~ 182 (614)
T PRK14971 158 TTEKHKILPTILS--RC-QIFDFNRIQV 182 (614)
T ss_pred eCCchhchHHHHh--hh-heeecCCCCH
Confidence 8778899999876 54 3488887776
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.81 E-value=2.3e-08 Score=87.33 Aligned_cols=92 Identities=13% Similarity=0.227 Sum_probs=59.2
Q ss_pred cc-CCCcHHHHHHHHH-cc-----cccccccc-------------------------CceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA-DL-----DLKEFQSN-------------------------SRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~-----~l~~v~~~-------------------------~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| ||||||+|+++++ .+ +...++.+ .+.+|+|||+|.+.+. ...
T Consensus 142 ~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----~~~ 217 (405)
T TIGR00362 142 YGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK----ERT 217 (405)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC----HHH
Confidence 79 9999999999999 11 11111100 1679999999988552 123
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
...++..++.+... +..++|.+++.|.. +++.+.. ||. ..++++.|+.
T Consensus 218 ~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 218 QEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDL 270 (405)
T ss_pred HHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCH
Confidence 45566777776542 23444444445554 5677774 886 5899999998
No 133
>PHA02244 ATPase-like protein
Probab=98.81 E-value=1.2e-08 Score=88.72 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred cc-CCCcHHHHHHHHH---ccccc---------ccc---c--------------cCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLK---------EFQ---S--------------NSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~---------~v~---~--------------~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
+| ||||||++|+++| ...+. .+. . ....+++|||+|...+ .+..
T Consensus 125 ~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p------~vq~ 198 (383)
T PHA02244 125 KGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP------EALI 198 (383)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH------HHHH
Confidence 69 9999999999999 11111 000 0 0168999999986632 3333
Q ss_pred HHHHHhh--------chhccCCCCeEEEEeCCCC-----------CCCCCCCCCCCccceEEEcCCCCc
Q 036857 93 ALLKFVD--------GLWSSSGDGRILVMTTDYK-----------DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 93 ~ll~~lD--------g~~~~~~~~~~vi~tTN~~-----------~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.|...++ +... ...++-+|+|+|.. ..+++|++- || ..|+|+||+.
T Consensus 199 ~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 199 IINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred HHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 4444443 2221 13477899999973 688999995 99 4799999987
No 134
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.7e-08 Score=83.94 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH----c-----c------------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA----D-----L------------------ 59 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA----~-----~------------------ 59 (170)
..||+.++.+++++...+.+...+ +| +|+|||++|+++| . .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 469999999999999999988776 49 9999999999999 1 0
Q ss_pred ------cccccc----c------cC---------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchh
Q 036857 60 ------DLKEFQ----S------NS---------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW 102 (170)
Q Consensus 60 ------~l~~v~----~------~~---------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~ 102 (170)
++..+. . .. ..|++|||+|.+ +....+.||..++.-
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------~~~aanaLLk~LEEp- 168 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------NRNAANAILKTLEEP- 168 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------CHHHHHHHHHHHhcC-
Confidence 000010 0 00 568889999877 344567788888764
Q ss_pred ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 103 SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 103 ~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.+.++|+.|+.++.+.|.+.. |+ .+++|+.|+.
T Consensus 169 ---p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~ 202 (351)
T PRK09112 169 ---PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDD 202 (351)
T ss_pred ---CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCH
Confidence 3466777777888888888764 77 5999988887
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=1.5e-08 Score=72.24 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=38.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH 140 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p 140 (170)
+.+||+||++.+....................... .....+|+|+|......+..+++ |++.++.+..+
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS--EKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh--cCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 59999999998866221111100000001111111 35778888888744444444443 99999888665
No 136
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.4e-08 Score=86.67 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=83.9
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH------c---cc-----------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA------D---LD----------------- 60 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA------~---~~----------------- 60 (170)
.-+|+.++++++++..++.+...+ +| +|+||+++|.++| . .+
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 368999999999999999887776 59 9999999999999 1 00
Q ss_pred -----------ccccc----c------c---------------------CceeEeeechhhhccCCccchHHHHHHHHHh
Q 036857 61 -----------LKEFQ----S------N---------------------SRSILVIEDAVTSFESNAYNSVALSALLKFV 98 (170)
Q Consensus 61 -----------l~~v~----~------~---------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~l 98 (170)
+..+. . . .+.|++|||+|.+ +....+.||..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------~~~aanaLLK~L 165 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------NANAANALLKVL 165 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc------CHHHHHHHHHHH
Confidence 00010 0 0 0779999999876 346677888888
Q ss_pred hchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 99 DGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 99 Dg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..- +.+.++|++|+.++.+.+.+.. |+ ..+.|+.|+.
T Consensus 166 Eep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~ 202 (365)
T PRK07471 166 EEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAP 202 (365)
T ss_pred hcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCH
Confidence 754 3577888899999999888764 54 5788888877
No 137
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.79 E-value=4.8e-08 Score=76.44 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=47.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCcc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFR 143 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~~ 143 (170)
..|+++||+|.+.. ...+.|+..|+.. +...++|++||.+..+++++.+ |. ..++|..|+..
T Consensus 97 ~kviiide~~~l~~------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~ 158 (188)
T TIGR00678 97 RRVVIIEDAERMNE------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEE 158 (188)
T ss_pred eEEEEEechhhhCH------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHH
Confidence 67999999998733 3466788888663 3467777778888999999986 55 47899888863
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.78 E-value=9.7e-09 Score=92.44 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=77.0
Q ss_pred CCCCCCcccccCChhhHHHhhcCc--------c---c-CCCcHHHHHHHHH-ccc-------------------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY--------W---G-PYTGKSSLIAAMA-DLD------------------------- 60 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~--------~---G-PGtGKT~la~aiA-~~~------------------------- 60 (170)
..+|..|+++++++.+...|...+ | | -|||||++||.+| .++
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc
Confidence 356899999999999999988777 3 9 9999999999999 221
Q ss_pred -cccccccC----------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 61 -LKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 61 -l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
+..+...+ .-|++|||++.+ +....++||..+..- +..|++|++|-.
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------S~~afNALLKTLEEP----P~hV~FIlATTe 158 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------SKQAFNALLKTLEEP----PSHVKFILATTE 158 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------hHHHHHHHhcccccC----ccCeEEEEecCC
Confidence 11111111 779999999866 446678888776554 678999999999
Q ss_pred CCCCCCCCCC
Q 036857 118 KDHIDPVPLR 127 (170)
Q Consensus 118 ~~~lD~AllR 127 (170)
++++++-++.
T Consensus 159 ~~Kip~TIlS 168 (515)
T COG2812 159 PQKIPNTILS 168 (515)
T ss_pred cCcCchhhhh
Confidence 9999999984
No 139
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.75 E-value=6e-08 Score=82.75 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=43.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc-eEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD-MHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d-~~i~~~~p~~ 142 (170)
+.||+|||+|.+... ....+..++...+.. ...+.++.+|++||.++ .+++.+.+ ||. ..|+|+.++.
T Consensus 130 ~~vlvIDE~d~L~~~---~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 130 SLIIVLDEIDYLVGD---DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDA 201 (365)
T ss_pred eEEEEECchhhhccC---CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCH
Confidence 679999999999742 122344444331111 11135788899999776 57887765 664 6788888876
No 140
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.74 E-value=4.9e-08 Score=90.09 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=78.2
Q ss_pred CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHHc-cc-------------------------------
Q 036857 24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMAD-LD------------------------------- 60 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA~-~~------------------------------- 60 (170)
+|..|++++.+|..+.-.+ +| ||||||++||+++. +.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 6889999999888765433 59 99999999999981 10
Q ss_pred ------ccc---------cccc----------------------CceeEeeechhhhccCCccchHHHHHHHHHhhc---
Q 036857 61 ------LKE---------FQSN----------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG--- 100 (170)
Q Consensus 61 ------l~~---------v~~~----------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg--- 100 (170)
+.. +... ...+||+||++.+ .....+.|++.|+.
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l------~~~~q~~Ll~~le~g~~ 155 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL------DDHLVDVLLDAAAMGVN 155 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC------CHHHHHHHHHHHhcCCE
Confidence 000 0000 0459999999977 34556777777752
Q ss_pred ------hhccCCCCeEEEEeCCCC-CCCCCCCCCCCccceEEEcCCCCc
Q 036857 101 ------LWSSSGDGRILVMTTDYK-DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 101 ------~~~~~~~~~~vi~tTN~~-~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.....+..+.+|+|+|.. ..+.++|+. ||+++|.+++|..
T Consensus 156 ~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~ 202 (633)
T TIGR02442 156 RVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD 202 (633)
T ss_pred EEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence 112223468899999964 368888985 9999999998875
No 141
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.73 E-value=6.3e-08 Score=86.76 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=44.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhh-chhcc-----CCCCeEEEEeCCCCC---CCCCCCCCCCccceEEEcCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVD-GLWSS-----SGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-g~~~~-----~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~~~~ 139 (170)
..++|+|||.. .+....+.||+.|. +.... .-...++++|||... ...+|+. .||-+++.+++
T Consensus 108 A~lLfLDEI~r------asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~--DRFliri~vp~ 179 (498)
T PRK13531 108 AEIVFLDEIWK------AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALY--DRMLIRLWLDK 179 (498)
T ss_pred ccEEeeccccc------CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhH--hhEEEEEECCC
Confidence 34899999964 45677888998883 22110 012346777778332 2334888 59999999999
Q ss_pred CCcc
Q 036857 140 HTFR 143 (170)
Q Consensus 140 p~~~ 143 (170)
|+..
T Consensus 180 l~~~ 183 (498)
T PRK13531 180 VQDK 183 (498)
T ss_pred CCch
Confidence 9863
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.72 E-value=4.4e-08 Score=87.03 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=58.5
Q ss_pred cc-CCCcHHHHHHHHH-c-----ccccc-------------cc----------ccCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA-D-----LDLKE-------------FQ----------SNSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~-----~~l~~-------------v~----------~~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
|| ||+|||+|++|++ . ..+.. +. .....+|+|||++.+.+.. ....
T Consensus 147 ~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~----~~qe 222 (445)
T PRK12422 147 FGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG----ATQE 222 (445)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh----hhHH
Confidence 89 9999999999999 1 11100 00 1127799999999875421 2234
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCC-C---CCCCCCCCCCCccc--eEEEcCCCCc
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDY-K---DHIDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~-~---~~lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
.+...++.+.. .+..+|+|||. | ..+++.+.+ ||. ..+.+..|+.
T Consensus 223 elf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 223 EFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTK 273 (445)
T ss_pred HHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCH
Confidence 45555555543 23456666654 4 356788886 885 8889988987
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3.8e-08 Score=83.17 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred CcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHHc-----------cccccccc---cC---------
Q 036857 24 TSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMAD-----------LDLKEFQS---NS--------- 68 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA~-----------~~l~~v~~---~~--------- 68 (170)
+|+++++++.+++.+...+ +| +|+|||++|+++|. .++..+.. ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 5899999999998887766 69 99999999999991 12212211 10
Q ss_pred ------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEE
Q 036857 69 ------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFH 136 (170)
Q Consensus 69 ------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~ 136 (170)
..|++|||+|.+ +....+.||..++.- +.++++|++|+.++.+-|.+.. |. ..++
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m------~~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~ 148 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKM------TEQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYK 148 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhc------CHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeee
Confidence 669999999876 344577888888764 4678888888889999998875 55 4888
Q ss_pred cCCCCc
Q 036857 137 LSSHTF 142 (170)
Q Consensus 137 ~~~p~~ 142 (170)
|..|+.
T Consensus 149 ~~~~~~ 154 (313)
T PRK05564 149 LNRLSK 154 (313)
T ss_pred CCCcCH
Confidence 888877
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=4.8e-08 Score=89.59 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=60.0
Q ss_pred cc-CCCcHHHHHHHHH----cc--ccccccc-------------------------cCceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA----DL--DLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~--~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| +|||||.|++||+ .. +...++. ..+.+|+||||+.+.... ..
T Consensus 320 yG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke----~t 395 (617)
T PRK14086 320 YGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE----ST 395 (617)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH----HH
Confidence 79 9999999999999 10 1111111 116799999999886522 22
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCCC----CCCCCCCCCCCcc--ceEEEcCCCCc
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDYK----DHIDPVPLRPSCM--DMHFHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~----~~lD~AllRpgR~--d~~i~~~~p~~ 142 (170)
...|.+.++.+.. .+.-+|+|+|.+ ..+++.|.. || ...+++..|+.
T Consensus 396 qeeLF~l~N~l~e---~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~ 448 (617)
T PRK14086 396 QEEFFHTFNTLHN---ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPEL 448 (617)
T ss_pred HHHHHHHHHHHHh---cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCH
Confidence 3556666666654 234455677743 357788886 76 57778888988
No 145
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.70 E-value=1.3e-07 Score=81.67 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=44.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc-eEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD-MHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d-~~i~~~~p~~ 142 (170)
+.||+|||+|.+... .....+..++..++... +.++.+|+++|..+ .+++.+.. |+. ..|+|+.++.
T Consensus 139 ~~viviDE~d~l~~~--~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~ 209 (394)
T PRK00411 139 VLIVALDDINYLFEK--EGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEEECCHhHhhcc--CCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCH
Confidence 579999999998721 22345666666655543 23777888888654 56666653 443 5678877776
No 146
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.67 E-value=1.4e-07 Score=86.82 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA 57 (170)
....|.+|+++++.....+.+...+ +| ||||||++|++++
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~ 196 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLAL 196 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3456889999999888777665444 79 9999999999986
No 147
>PRK06620 hypothetical protein; Validated
Probab=98.66 E-value=6.2e-08 Score=78.21 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=53.2
Q ss_pred cc-CCCcHHHHHHHHH-cccccc---cc-----ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEE
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKE---FQ-----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILV 112 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~---v~-----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi 112 (170)
|| ||||||+++++++ ..+..- .+ .....++++||+|.+ +.. .+...++.+.+ .+..+++
T Consensus 50 ~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~------~~~---~lf~l~N~~~e--~g~~ili 118 (214)
T PRK06620 50 KGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENW------QEP---ALLHIFNIINE--KQKYLLL 118 (214)
T ss_pred ECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccc------hHH---HHHHHHHHHHh--cCCEEEE
Confidence 89 9999999999998 211111 10 112568999999843 112 34444445544 2345566
Q ss_pred EeCCCCCC--CCCCCCCCCccc--eEEEcCCCCcc
Q 036857 113 MTTDYKDH--IDPVPLRPSCMD--MHFHLSSHTFR 143 (170)
Q Consensus 113 ~tTN~~~~--lD~AllRpgR~d--~~i~~~~p~~~ 143 (170)
.++..|.. + ++++ .|+. ..+++..|+..
T Consensus 119 ts~~~p~~l~l-~~L~--SRl~~gl~~~l~~pd~~ 150 (214)
T PRK06620 119 TSSDKSRNFTL-PDLS--SRIKSVLSILLNSPDDE 150 (214)
T ss_pred EcCCCccccch-HHHH--HHHhCCceEeeCCCCHH
Confidence 65554443 5 6666 4776 57888888873
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.66 E-value=1e-07 Score=90.24 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=71.5
Q ss_pred ccccCChhhHHHhhcCc-------------------cc-CCCcHHHHHHHHH-----------ccccccccc--------
Q 036857 26 NTIATDFDMNKALVDDY-------------------WG-PYTGKSSLIAAMA-----------DLDLKEFQS-------- 66 (170)
Q Consensus 26 ~~v~~~~~~k~~l~~~~-------------------~G-PGtGKT~la~aiA-----------~~~l~~v~~-------- 66 (170)
+.|++++...+.+...+ +| ||||||++|+++| .++++....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 45667776666654433 49 9999999999999 122221100
Q ss_pred ---------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCC
Q 036857 67 ---------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYK 118 (170)
Q Consensus 67 ---------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~ 118 (170)
+..+||+|||+|.. .....+.|+..+|.-. .. .-.+.++|+|||.-
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 01489999999976 3456778888887421 00 01478999999943
Q ss_pred CC-------------------------------------CCCCCCCCCccceEEEcCCCCc
Q 036857 119 DH-------------------------------------IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 119 ~~-------------------------------------lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.. +.|.|+ +|+|..|.|...+.
T Consensus 663 ~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefl--nRid~ii~F~pL~~ 721 (821)
T CHL00095 663 SKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFL--NRLDEIIVFRQLTK 721 (821)
T ss_pred hHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHh--ccCCeEEEeCCCCH
Confidence 21 123455 59999999988887
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.64 E-value=1.5e-07 Score=89.46 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=46.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-ccC------CCCeEEEEeCCCCC----------------------
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SSS------GDGRILVMTTDYKD---------------------- 119 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~~------~~~~~vi~tTN~~~---------------------- 119 (170)
.+||||||+|.. .....+.|++.+|.-. ... -.+.+||+|||.-.
T Consensus 668 ~~vlllDeieka------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~ 741 (852)
T TIGR03346 668 YSVVLFDEVEKA------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEV 741 (852)
T ss_pred CcEEEEeccccC------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHH
Confidence 469999999965 3456777888885321 100 14678999999621
Q ss_pred ---CCCCCCCCCCccceEEEcCCCCc
Q 036857 120 ---HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 120 ---~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+.|.|+ +|+|..+.|..++.
T Consensus 742 ~~~~F~pel~--~Rid~IivF~PL~~ 765 (852)
T TIGR03346 742 LRAHFRPEFL--NRIDEIVVFHPLGR 765 (852)
T ss_pred HHhhcCHHHh--cCcCeEEecCCcCH
Confidence 1345566 59999999999888
No 150
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.64 E-value=9.5e-08 Score=86.14 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=74.0
Q ss_pred CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH----------ccccccccc-----------c------
Q 036857 24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA----------DLDLKEFQS-----------N------ 67 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA----------~~~l~~v~~-----------~------ 67 (170)
.|.++.+....++.+.-.+ .| ||||||++++.++ .++...+.+ .
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ 268 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRS 268 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccC
Confidence 5777777776776654333 49 9999999999999 111111100 0
Q ss_pred -------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhc-h--------hccCCCCeEEEE
Q 036857 68 -------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG-L--------WSSSGDGRILVM 113 (170)
Q Consensus 68 -------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg-~--------~~~~~~~~~vi~ 113 (170)
...++|+||++.+ ....+..|++.|+. . ....+.++.+|+
T Consensus 269 ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIA 342 (506)
T PRK09862 269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVA 342 (506)
T ss_pred CCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEE
Confidence 0789999999765 34556667766632 1 111245789999
Q ss_pred eCCCCC---------------------CCCCCCCCCCccceEEEcCCCC
Q 036857 114 TTDYKD---------------------HIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 114 tTN~~~---------------------~lD~AllRpgR~d~~i~~~~p~ 141 (170)
|+|... .+..+++ .|||+++++++|+
T Consensus 343 a~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plL--DRfdL~v~v~~~~ 389 (506)
T PRK09862 343 AMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFL--DRFDLSLEIPLPP 389 (506)
T ss_pred eecCccceecCCCCCCcCHHHHHHHHhhCCHhHH--hhccEEEEeCCCC
Confidence 999653 4666777 6999999999985
No 151
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.62 E-value=3.1e-07 Score=80.59 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=52.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHH---------hhchhccCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKF---------VDGLWSSSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~---------lDg~~~~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~ 138 (170)
..|+++||+..+- ...+..||+. .+|+.-.++.++++|+|+|.-+ .|-|-|+ .||...|...
T Consensus 145 RGIlYvDEvnlL~------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLl--DRfg~~v~~~ 216 (423)
T COG1239 145 RGILYVDEVNLLD------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLL--DRFGLEVDTH 216 (423)
T ss_pred CCEEEEecccccc------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhH--hhhcceeecc
Confidence 7899999997662 3455666654 3677777788999999999554 7777777 6999999999
Q ss_pred CCCc
Q 036857 139 SHTF 142 (170)
Q Consensus 139 ~p~~ 142 (170)
+|..
T Consensus 217 ~~~~ 220 (423)
T COG1239 217 YPLD 220 (423)
T ss_pred CCCC
Confidence 9998
No 152
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.58 E-value=1.6e-07 Score=86.14 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=65.9
Q ss_pred cc-CCCcHHHHHHHHHc-c----ccccccc-------------------------------cCceeEeeechhhhccCCc
Q 036857 43 WG-PYTGKSSLIAAMAD-L----DLKEFQS-------------------------------NSRSILVIEDAVTSFESNA 85 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~-~----~l~~v~~-------------------------------~~p~il~iDEiD~~~~~~~ 85 (170)
.| ||||||++|++++. + .+..+.. ....+||+||++.+
T Consensus 22 ~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl----- 96 (589)
T TIGR02031 22 RARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL----- 96 (589)
T ss_pred EcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC-----
Confidence 59 99999999999991 0 1111110 00459999999876
Q ss_pred cchHHHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC---CCCCCCCCCCccceEEEcCCCCc
Q 036857 86 YNSVALSALLKFVDG---------LWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 86 ~~~~~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.....+.|++.|+. .....+.++.+|+|+|..+ .+.++++. ||++++.+.++..
T Consensus 97 -~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 97 -DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred -CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 34567778887752 2222345678999999776 79999996 9999999998766
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=1.6e-07 Score=83.31 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=57.2
Q ss_pred cc-CCCcHHHHHHHHH-cc-----cccc---------------ccc-----------cCceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMA-DL-----DLKE---------------FQS-----------NSRSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~-----~l~~---------------v~~-----------~~p~il~iDEiD~~~~~~~~~~~ 89 (170)
|| ||||||.|++|+| .+ +... +.. ..+.+|+|||++.+.+.. .
T Consensus 136 yG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~----~ 211 (440)
T PRK14088 136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT----G 211 (440)
T ss_pred EcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH----H
Confidence 89 9999999999999 10 1110 000 127799999999886521 1
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeC-CCCCC---CCCCCCCCCcc--ceEEEcCCCCc
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTT-DYKDH---IDPVPLRPSCM--DMHFHLSSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tT-N~~~~---lD~AllRpgR~--d~~i~~~~p~~ 142 (170)
....+...++.+... +..+|+|| +.|.. +++.+.. || ...+.+..|+.
T Consensus 212 ~q~elf~~~n~l~~~---~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~ 265 (440)
T PRK14088 212 VQTELFHTFNELHDS---GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHHHHHHHHHHHc---CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCH
Confidence 234455666666542 33455555 55554 4556664 55 47888999998
No 154
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-07 Score=86.27 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=79.4
Q ss_pred cc-CCCcHHHHHHHHH---cccc-----ccccccC-------------------ceeEeeechhhhccCC--ccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA---DLDL-----KEFQSNS-------------------RSILVIEDAVTSFESN--AYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l-----~~v~~~~-------------------p~il~iDEiD~~~~~~--~~~~~~~~ 92 (170)
+| ||||||++++++| ++.+ +++..+. |+|||+-.+|.+..++ +...+.++
T Consensus 437 hG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~ 516 (953)
T KOG0736|consen 437 HGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLK 516 (953)
T ss_pred eCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHH
Confidence 59 9999999999999 2222 2221111 9999999999888632 23333333
Q ss_pred HHHHHh--hchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc
Q 036857 93 ALLKFV--DGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK 156 (170)
Q Consensus 93 ~ll~~l--Dg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~ 156 (170)
.+-..+ |-... ....+++++||+..+.+++.+.+ -|-..|.++.|++ +.++++. ++..+..
T Consensus 517 ~i~~~ls~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~ 593 (953)
T KOG0736|consen 517 VIRHLLSNEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARK 593 (953)
T ss_pred HHHHHHhcccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHh
Confidence 222222 22222 25689999999999999999986 6777888888888 3333321 2233332
Q ss_pred -CCCCHHHHHHhh
Q 036857 157 -IQATPAEVPGEL 168 (170)
Q Consensus 157 -~~~s~a~i~~~l 168 (170)
..|+.+++..+.
T Consensus 594 t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 594 TSGFSFGDLEALV 606 (953)
T ss_pred cCCCCHHHHHHHh
Confidence 357887776654
No 155
>PRK05642 DNA replication initiation factor; Validated
Probab=98.54 E-value=4.7e-07 Score=73.82 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred cc-CCCcHHHHHHHHH----ccccccccc----------------cCceeEeeechhhhccCCccchHHHHHHHHHhhch
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEFQS----------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGL 101 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v~~----------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~ 101 (170)
|| +|||||.|++|++ ..+...++. ....+|++||++.+.+. ......|...++..
T Consensus 51 ~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~----~~~~~~Lf~l~n~~ 126 (234)
T PRK05642 51 WGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGK----ADWEEALFHLFNRL 126 (234)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCC----hHHHHHHHHHHHHH
Confidence 79 9999999999998 111111100 01468999999977542 12234566666666
Q ss_pred hccCCCCeEEEEeCC-CCCC---CCCCCCCCCcc--ceEEEcCCCCc
Q 036857 102 WSSSGDGRILVMTTD-YKDH---IDPVPLRPSCM--DMHFHLSSHTF 142 (170)
Q Consensus 102 ~~~~~~~~~vi~tTN-~~~~---lD~AllRpgR~--d~~i~~~~p~~ 142 (170)
.. .+..+++|+| .+.. ..|.+.. |+ -..+.+..|+.
T Consensus 127 ~~---~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~ 168 (234)
T PRK05642 127 RD---SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSD 168 (234)
T ss_pred Hh---cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCH
Confidence 54 2344455444 4443 3677775 77 47777788777
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.52 E-value=3.2e-07 Score=87.34 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=59.9
Q ss_pred cc-CCCcHHHHHHHHH-----------cccccccc-----------------------------ccCceeEeeechhhhc
Q 036857 43 WG-PYTGKSSLIAAMA-----------DLDLKEFQ-----------------------------SNSRSILVIEDAVTSF 81 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-----------~~~l~~v~-----------------------------~~~p~il~iDEiD~~~ 81 (170)
.| ||||||.+|+++| .++++... .+..+||+|||+|..
T Consensus 602 ~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka- 680 (852)
T TIGR03345 602 VGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA- 680 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-
Confidence 49 9999999999999 12222211 112789999999865
Q ss_pred cCCccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCCCC-----------------------------CCCCCC
Q 036857 82 ESNAYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDYKD-----------------------------HIDPVP 125 (170)
Q Consensus 82 ~~~~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~~~-----------------------------~lD~Al 125 (170)
.....+.|++.+|.-.-. . -.+.++|+|||... .+.|+|
T Consensus 681 -----~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 755 (852)
T TIGR03345 681 -----HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF 755 (852)
T ss_pred -----CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence 335567777777643210 0 14689999999411 144566
Q ss_pred CCCCccceEEEcCCCCc
Q 036857 126 LRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~ 142 (170)
+ +|+| .|.|...+.
T Consensus 756 l--nRi~-iI~F~pLs~ 769 (852)
T TIGR03345 756 L--GRMT-VIPYLPLDD 769 (852)
T ss_pred h--ccee-EEEeCCCCH
Confidence 6 4888 678877776
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.51 E-value=4.1e-07 Score=86.63 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=46.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCC-----------------------
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYK----------------------- 118 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~----------------------- 118 (170)
.++|+|||+|.. .....+.|++.+|.-. .. .-.+.++|+|||..
T Consensus 671 ~~vLllDEieka------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~ 744 (857)
T PRK10865 671 YSVILLDEVEKA------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGV 744 (857)
T ss_pred CCeEEEeehhhC------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHH
Confidence 379999999865 3456777888776321 10 01356899999962
Q ss_pred --CCCCCCCCCCCccceEEEcCCCCc
Q 036857 119 --DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 119 --~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.+.|+|+ .|+|..+.|..++.
T Consensus 745 ~~~~f~PELl--nRld~iivF~PL~~ 768 (857)
T PRK10865 745 VSHNFRPEFI--NRIDEVVVFHPLGE 768 (857)
T ss_pred HcccccHHHH--HhCCeeEecCCCCH
Confidence 13456777 49999999999888
No 158
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.51 E-value=5.7e-07 Score=77.97 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=45.9
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-------cCCCCeEEEEeCCCC-------CCCCCCCCCCCccceE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-------SSGDGRILVMTTDYK-------DHIDPVPLRPSCMDMH 134 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~d~~ 134 (170)
..|+-|+|+++. ....+..||+.++.-.- .-+-+.++|++||.. +...+||++ |+. .
T Consensus 237 rGi~~f~Ei~K~------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~ 307 (361)
T smart00763 237 RGILEFVEMFKA------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-K 307 (361)
T ss_pred CceEEEeehhcC------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-E
Confidence 466666776543 44567778887763221 112346899999976 367899997 998 9
Q ss_pred EEcCCCCc
Q 036857 135 FHLSSHTF 142 (170)
Q Consensus 135 i~~~~p~~ 142 (170)
|.++||..
T Consensus 308 i~vpY~l~ 315 (361)
T smart00763 308 VKVPYCLR 315 (361)
T ss_pred EeCCCcCC
Confidence 99999998
No 159
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.50 E-value=3.8e-07 Score=82.18 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=75.4
Q ss_pred CCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHHcc----------c---cccc----------c-----
Q 036857 23 ATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMADL----------D---LKEF----------Q----- 65 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA~~----------~---l~~v----------~----- 65 (170)
..|+++.++...++.+.-.+ +| ||||||+++++++.+ + +..+ .
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~ 268 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFR 268 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCcc
Confidence 37899999998888776555 59 999999999999810 0 0000 0
Q ss_pred ------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhch---------hccCCCCeEEE
Q 036857 66 ------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGL---------WSSSGDGRILV 112 (170)
Q Consensus 66 ------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~---------~~~~~~~~~vi 112 (170)
.....+|||||++.+- ...+..|++.|+.- ....+.++.+|
T Consensus 269 ~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlI 342 (499)
T TIGR00368 269 SPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK------RSVLDALREPIEDGSISISRASAKIFYPARFQLV 342 (499)
T ss_pred ccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEE
Confidence 0006799999998762 34445555555321 11123578899
Q ss_pred EeCCCC-----C------------------CCCCCCCCCCccceEEEcCCCCc
Q 036857 113 MTTDYK-----D------------------HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 113 ~tTN~~-----~------------------~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|||.- . .+...++ .|||++++++.++.
T Consensus 343 aa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pll--DR~dl~~~~~~~~~ 393 (499)
T TIGR00368 343 AAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFL--DRIDLSVEVPLLPP 393 (499)
T ss_pred EecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHH--hhCCEEEEEcCCCH
Confidence 999952 1 4777777 69999999997654
No 160
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.50 E-value=2.4e-07 Score=72.37 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=50.2
Q ss_pred cc-CCCcHHHHHHHHH---cc---------ccccccc----cC-----------------ceeEeeechhhhccCCc---
Q 036857 43 WG-PYTGKSSLIAAMA---DL---------DLKEFQS----NS-----------------RSILVIEDAVTSFESNA--- 85 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~---------~l~~v~~----~~-----------------p~il~iDEiD~~~~~~~--- 85 (170)
.| +|||||.+|+++| .. +++.... .. ..||||||||......+
T Consensus 9 ~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~ 88 (171)
T PF07724_consen 9 AGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGA 88 (171)
T ss_dssp ESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCS
T ss_pred ECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccccc
Confidence 49 9999999999999 21 1222222 11 56999999999876211
Q ss_pred --cchHHHHHHHHHhhchhcc--C-----CCCeEEEEeCCCCC
Q 036857 86 --YNSVALSALLKFVDGLWSS--S-----GDGRILVMTTDYKD 119 (170)
Q Consensus 86 --~~~~~~~~ll~~lDg~~~~--~-----~~~~~vi~tTN~~~ 119 (170)
....+.+.||+.+|+-.-. . -.+.++|+|+|.-.
T Consensus 89 ~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 89 DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1125677788888754321 0 13679999999554
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=3.5e-07 Score=78.17 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=75.7
Q ss_pred CcccccC-ChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--------------------------cccc
Q 036857 24 TSNTIAT-DFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--------------------------DLKE 63 (170)
Q Consensus 24 ~~~~v~~-~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--------------------------~l~~ 63 (170)
.|++|.+ ++.+.+.+...+ || ||+|||++|+++| .+ ++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3667777 777777766655 69 9999999999999 10 1111
Q ss_pred ccc-----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 64 FQS-----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 64 v~~-----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
+.. ....|++|||+|.+ +....+.||..|+.- ++.+++|++|+.++.
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------~~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------TASAANSLLKFLEEP----SGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh------CHHHHHHHHHHhcCC----CCCceEEEEeCChHh
Confidence 100 00569999999876 334667888888764 468888889999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|-|+++. |. ..++|..|+.
T Consensus 153 ll~TIrS--Rc-~~i~~~~~~~ 171 (329)
T PRK08058 153 ILPTILS--RC-QVVEFRPLPP 171 (329)
T ss_pred CcHHHHh--hc-eeeeCCCCCH
Confidence 9999875 43 5678888776
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.3e-07 Score=85.86 Aligned_cols=91 Identities=22% Similarity=0.387 Sum_probs=66.1
Q ss_pred c-CCCcHHHHHHHHH-----------ccccccccccC-----------------------------ceeEeeechhhhcc
Q 036857 44 G-PYTGKSSLIAAMA-----------DLDLKEFQSNS-----------------------------RSILVIEDAVTSFE 82 (170)
Q Consensus 44 G-PGtGKT~la~aiA-----------~~~l~~v~~~~-----------------------------p~il~iDEiD~~~~ 82 (170)
| .|+|||.+|+++| .+++++....+ .|||+||||+.
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK--- 604 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK--- 604 (786)
T ss_pred CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh---
Confidence 9 9999999999999 34555443322 78999999986
Q ss_pred CCccchHHHHHHHHHhhchhccCC-------CCeEEEEeCCCC-C---------------------------CCCCCCCC
Q 036857 83 SNAYNSVALSALLKFVDGLWSSSG-------DGRILVMTTDYK-D---------------------------HIDPVPLR 127 (170)
Q Consensus 83 ~~~~~~~~~~~ll~~lDg~~~~~~-------~~~~vi~tTN~~-~---------------------------~lD~AllR 127 (170)
.....++-||+.||.-.-.-+ .+.++|||||-= + ...|+|+
T Consensus 605 ---AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL- 680 (786)
T COG0542 605 ---AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL- 680 (786)
T ss_pred ---cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH-
Confidence 456788999999984321111 256899999921 0 1245666
Q ss_pred CCccceEEEcCCCCc
Q 036857 128 PSCMDMHFHLSSHTF 142 (170)
Q Consensus 128 pgR~d~~i~~~~p~~ 142 (170)
.|+|-.|.|..-+.
T Consensus 681 -NRid~II~F~~L~~ 694 (786)
T COG0542 681 -NRIDEIIPFNPLSK 694 (786)
T ss_pred -hhcccEEeccCCCH
Confidence 49999999998888
No 163
>PRK12377 putative replication protein; Provisional
Probab=98.42 E-value=6.5e-07 Score=74.00 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=44.3
Q ss_pred cc-CCCcHHHHHHHHH----ccccc-------c----cc-----c----------cCceeEeeechhhhccCCccchHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLK-------E----FQ-----S----------NSRSILVIEDAVTSFESNAYNSVAL 91 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~-------~----v~-----~----------~~p~il~iDEiD~~~~~~~~~~~~~ 91 (170)
|| ||||||.+|.||| ..+.+ . +. . ....+|+|||+..... +....
T Consensus 107 ~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~----s~~~~ 182 (248)
T PRK12377 107 SGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE----TKNEQ 182 (248)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC----CHHHH
Confidence 79 9999999999999 10100 0 00 0 1178999999965432 22344
Q ss_pred HHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 92 SALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 92 ~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
..|.+.+|.-.. ...-+|+|||.
T Consensus 183 ~~l~~ii~~R~~---~~~ptiitSNl 205 (248)
T PRK12377 183 VVLNQIIDRRTA---SMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHh---cCCCEEEEcCC
Confidence 566677777653 45677999994
No 164
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3e-07 Score=81.81 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
...|.||.+++..|+.++-.. +| |||||||+|+.+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~ 219 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLP 219 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhc
Confidence 347999999999999987655 79 9999999999998
No 165
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.38 E-value=7.9e-07 Score=73.33 Aligned_cols=68 Identities=28% Similarity=0.285 Sum_probs=42.7
Q ss_pred cc-CCCcHHHHHHHHH----c-------ccccccc---------c-----------cCceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA----D-------LDLKEFQ---------S-----------NSRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~-------~~l~~v~---------~-----------~~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| ||||||+++.||| . +.+..+. . ....+|+|||++.... ....
T Consensus 105 ~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~----s~~~ 180 (244)
T PRK07952 105 SGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE----SRYE 180 (244)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC----CHHH
Confidence 79 9999999999999 1 0111110 0 1188999999987532 2222
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
...+.+.+|.-.. ...-+|+|||.
T Consensus 181 ~~~l~~Ii~~Ry~---~~~~tiitSNl 204 (244)
T PRK07952 181 KVIINQIVDRRSS---SKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHHHHHHh---CCCCEEEeCCC
Confidence 2334455666542 46778999994
No 166
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=1.4e-06 Score=70.85 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=54.5
Q ss_pred cc-CCCcHHHHHHHHH-ccccccccc----c------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeE
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEFQS----N------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRI 110 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v~~----~------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~ 110 (170)
|| ||+|||+|+++++ ......+.. . ...+|++||+|.+.. .+ .+|...++.+.+ .+..
T Consensus 50 ~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~----~~---~~lf~l~n~~~~---~g~~ 119 (226)
T PRK09087 50 AGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGF----DE---TGLFHLINSVRQ---AGTS 119 (226)
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCC----CH---HHHHHHHHHHHh---CCCe
Confidence 89 9999999999998 211111111 0 135788999997621 12 345566666654 2344
Q ss_pred EEEeCC-CCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857 111 LVMTTD-YKDH---IDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 111 vi~tTN-~~~~---lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
+++|++ .+.. ..+.+.- |+. ..+++..|+.
T Consensus 120 ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~ 155 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDD 155 (226)
T ss_pred EEEECCCChHHhccccccHHH--HHhCCceeecCCCCH
Confidence 555554 3432 3566764 776 8889999987
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.36 E-value=2.2e-06 Score=81.51 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC---CCCCCCCCCCCCccce-EEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY---KDHIDPVPLRPSCMDM-HFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~---~~~lD~AllRpgR~d~-~i~~~~p~~ 142 (170)
..||+|||||.+... .+.. |.+.++.... .+..+++|+.+|. ++.++|.+.. |+.. .|.|+.++.
T Consensus 870 v~IIILDEID~L~kK---~QDV---LYnLFR~~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTa 938 (1164)
T PTZ00112 870 VSILIIDEIDYLITK---TQKV---LFTLFDWPTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKG 938 (1164)
T ss_pred ceEEEeehHhhhCcc---HHHH---HHHHHHHhhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCH
Confidence 469999999999763 2233 3333333222 2457889999984 6677887764 5543 366755554
No 168
>PRK08116 hypothetical protein; Validated
Probab=98.36 E-value=7.2e-07 Score=74.34 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=60.8
Q ss_pred cc-CCCcHHHHHHHHH----ccc-------c----cccc-----------------ccCceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMA----DLD-------L----KEFQ-----------------SNSRSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~-------l----~~v~-----------------~~~p~il~iDEiD~~~~~~~~~~~ 89 (170)
|| ||||||.||.|+| ..+ . ..+. .....+|+|||+... .....
T Consensus 120 ~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e----~~t~~ 195 (268)
T PRK08116 120 WGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAE----RDTEW 195 (268)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCC----CCCHH
Confidence 89 9999999999999 001 0 0110 011679999999532 12344
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCC-CC----CCCCCCCCCcc---ceEEEcCCCCcchHHH
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYK-DH----IDPVPLRPSCM---DMHFHLSSHTFRHYLF 147 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~-~~----lD~AllRpgR~---d~~i~~~~p~~~~~l~ 147 (170)
....|.+.+|.... .+..+|+|||.. +. ++..+. .|+ -..|.+.-||.+....
T Consensus 196 ~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~--sRl~e~~~~v~~~g~d~R~~~~ 256 (268)
T PRK08116 196 AREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIY--DRILEMCTPVENEGKSYRKEIA 256 (268)
T ss_pred HHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHH--HHHHHcCEEEEeeCcChhHHHH
Confidence 56677788887754 466789999954 33 455555 354 4567777777744433
No 169
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.1e-06 Score=75.23 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=49.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..|++|||+|.+ +....+.||..|+.- +.++++|++|+.++.|.|.++. |+.. +.|+.|+.
T Consensus 107 ~kv~iI~~a~~m------~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~ 167 (328)
T PRK05707 107 RKVVLIEPAEAM------NRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSN 167 (328)
T ss_pred CeEEEECChhhC------CHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCH
Confidence 568888999877 446678888888774 4689999999999999999985 6654 88888876
No 170
>PRK06526 transposase; Provisional
Probab=98.32 E-value=5.9e-07 Score=74.42 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=41.4
Q ss_pred cc-CCCcHHHHHHHHH----ccccccccc-------------------------cCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
|| ||||||.+|.+++ ..+....+. ..+.+|+|||++.... ......
T Consensus 104 ~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~----~~~~~~ 179 (254)
T PRK06526 104 LGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF----EPEAAN 179 (254)
T ss_pred EeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC----CHHHHH
Confidence 79 9999999999998 111100000 1178999999986532 122233
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
.+.+.++.... ..-+|+|||.+
T Consensus 180 ~L~~li~~r~~----~~s~IitSn~~ 201 (254)
T PRK06526 180 LFFQLVSSRYE----RASLIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHh----cCCEEEEcCCC
Confidence 45555665543 23478888854
No 171
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.32 E-value=2.2e-06 Score=61.65 Aligned_cols=73 Identities=18% Similarity=0.380 Sum_probs=43.7
Q ss_pred cc-CCCcHHHHHHHHH-----cc--c-cccccccC-----------ceeEeeechhhhccCCccchHHHHHHHHHhhch-
Q 036857 43 WG-PYTGKSSLIAAMA-----DL--D-LKEFQSNS-----------RSILVIEDAVTSFESNAYNSVALSALLKFVDGL- 101 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-----~~--~-l~~v~~~~-----------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~- 101 (170)
|| ||+|||++|+.+| .. . -..+.... ..++++||+...-... .....+.+++.++..
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~~~--~~~~~~~l~~l~s~~~ 81 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDNDGY--NYSDESELIRLISSNP 81 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccccc--chHHHHHHHHHHhcCC
Confidence 79 9999999999998 11 1 12222211 7788999997654321 123566666655432
Q ss_pred --------hcc--CCCCeEEEEeCCC
Q 036857 102 --------WSS--SGDGRILVMTTDY 117 (170)
Q Consensus 102 --------~~~--~~~~~~vi~tTN~ 117 (170)
... .-...+||+|||.
T Consensus 82 ~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 82 FQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cccccccHhhCCCccCCCEEEEcCCC
Confidence 210 0113689999984
No 172
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.30 E-value=5.8e-06 Score=66.84 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=55.6
Q ss_pred cc-CCCcHHHHHHHHH----c--ccccccc---------------c----------cCceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA----D--LDLKEFQ---------------S----------NSRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~--~~l~~v~---------------~----------~~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| +|+|||.|.+|++ . -+...+. . ....+|+|||++.+.. ....
T Consensus 40 ~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~----~~~~ 115 (219)
T PF00308_consen 40 YGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG----KQRT 115 (219)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----HHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----chHH
Confidence 89 9999999999998 1 1111111 0 1178999999998854 2345
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCCCCCCC---CCCCCCCccc--eEEEcCCCCc
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDYKDHID---PVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD---~AllRpgR~d--~~i~~~~p~~ 142 (170)
...+...++.+... +..+|+.+...|..+. +-+. .||. ..+++..|+.
T Consensus 116 q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~--SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 116 QEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLR--SRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHH--HHHHCSEEEEE----H
T ss_pred HHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhh--hhHhhcchhhcCCCCH
Confidence 56677777777652 3455555545767664 3333 3554 5888888888
No 173
>PRK08181 transposase; Validated
Probab=98.30 E-value=1.1e-06 Score=73.36 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=43.3
Q ss_pred cc-CCCcHHHHHHHHH----ccccccccc-------------------------cCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
|| ||||||.+|.|+| ..+...++. ..+.+|+|||++.... ......
T Consensus 112 ~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~----~~~~~~ 187 (269)
T PRK08181 112 FGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK----DQAETS 187 (269)
T ss_pred EecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC----CHHHHH
Confidence 79 9999999999998 111111110 1178999999986543 223345
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
.|.+.++.... +.-+|+|||.+
T Consensus 188 ~Lf~lin~R~~----~~s~IiTSN~~ 209 (269)
T PRK08181 188 VLFELISARYE----RRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHh----CCCEEEEcCCC
Confidence 56666665543 23588889843
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=4e-06 Score=77.55 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=37.2
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA 57 (170)
.++....|..+++++++++..+++...+ +| ||||||++++++|
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677999999999999998877766443 69 9999999999999
No 175
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.26 E-value=7.9e-07 Score=73.45 Aligned_cols=44 Identities=25% Similarity=0.172 Sum_probs=37.9
Q ss_pred cccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH
Q 036857 14 WNSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA 57 (170)
..+++..+|..+.+++++++.-+++.-.. -| ||||||+.+.++|
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHH
Confidence 34889999999999999999988775433 39 9999999999999
No 176
>PRK06921 hypothetical protein; Provisional
Probab=98.23 E-value=2.4e-06 Score=71.17 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=44.7
Q ss_pred cc-CCCcHHHHHHHHH----cc-cccccccc-----------------------CceeEeeechhh-hccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DL-DLKEFQSN-----------------------SRSILVIEDAVT-SFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~-~l~~v~~~-----------------------~p~il~iDEiD~-~~~~~~~~~~~~~ 92 (170)
|| ||||||.|+.||| .. +...++.. ...+|+|||+.. +.+..........
T Consensus 123 ~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~ 202 (266)
T PRK06921 123 LGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIE 202 (266)
T ss_pred ECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHHHH
Confidence 79 9999999999999 11 21111110 178999999943 1121112233445
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCC-CCCC
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDY-KDHI 121 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~-~~~l 121 (170)
.|.+.++.... .+.-+|+|||. ++.+
T Consensus 203 ~lf~iin~R~~---~~k~tIitsn~~~~el 229 (266)
T PRK06921 203 QMYSVLNYRYL---NHKPILISSELTIDEL 229 (266)
T ss_pred HHHHHHHHHHH---CCCCEEEECCCCHHHH
Confidence 56666766653 23446788883 4433
No 177
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.23 E-value=3.2e-06 Score=80.46 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=61.1
Q ss_pred cc-CCCcHHHHHHHHHc----------cccccc--------cc---------------cCceeEeeechhhhccCCccch
Q 036857 43 WG-PYTGKSSLIAAMAD----------LDLKEF--------QS---------------NSRSILVIEDAVTSFESNAYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~----------~~l~~v--------~~---------------~~p~il~iDEiD~~~~~~~~~~ 88 (170)
+| ||||||.+|++++. .....+ .. ....+++|||+|.+- .
T Consensus 498 vGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms------~ 571 (915)
T PTZ00111 498 CGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH------N 571 (915)
T ss_pred eCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC------H
Confidence 59 99999999999981 111110 00 005799999999873 2
Q ss_pred HHHHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEE-cCCCCc
Q 036857 89 VALSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFH-LSSHTF 142 (170)
Q Consensus 89 ~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~-~~~p~~ 142 (170)
...+.|++.|+ |+....+...-||+|+|+.+ .|+++++- |||..+- ++.|+.
T Consensus 572 ~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~ 646 (915)
T PTZ00111 572 ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQ 646 (915)
T ss_pred HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCCh
Confidence 34455666663 22222345788999999753 57899995 9998754 566776
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=8.2e-06 Score=69.54 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=76.1
Q ss_pred CcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-----cc----------------cccccc-----
Q 036857 24 TSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-----DL----------------DLKEFQ----- 65 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-----~~----------------~l~~v~----- 65 (170)
.|+++++++.+++.+...+ +| +|+||+++|+++| .- |+..+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 5889999999999988877 59 9999999999999 10 001000
Q ss_pred -c---------------c------------------------CceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857 66 -S---------------N------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS 105 (170)
Q Consensus 66 -~---------------~------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~ 105 (170)
. + ...|++||++|.+ +....+.||..|+.-
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------~~~aaNaLLK~LEEP---- 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------NEAAANALLKTLEEP---- 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------CHHHHHHHHHHHhCC----
Confidence 0 0 0567777777765 334567788877653
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 106 GDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 106 ~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+ +.++|++|+.++.|-|.++. |. ..++|..++.
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~ 184 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSD 184 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCH
Confidence 3 55778888899999999885 54 6788888877
No 179
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.20 E-value=4.1e-06 Score=74.16 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=61.9
Q ss_pred ceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccC------CCCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857 69 RSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSS------GDGRILVMTTD----YKDHIDPVPLRPSCMD 132 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~------~~~~~vi~tTN----~~~~lD~AllRpgR~d 132 (170)
..||||||||.++...+ ...-+...||..++|..-.. ..++++|++-. .|++|-|.|+ |||-
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~P 327 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFP 327 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cccc
Confidence 67999999999996321 11235667888888743211 23566666433 5677788888 8999
Q ss_pred eEEEcCCCCc----------chHHHHHHHHHhhcCC----CCHHHHH
Q 036857 133 MHFHLSSHTF----------RHYLFEKIEERLAKIQ----ATPAEVP 165 (170)
Q Consensus 133 ~~i~~~~p~~----------~~~l~~~~~~~~~~~~----~s~a~i~ 165 (170)
.++++...+. +..+..+.+.++...+ ||.+.+.
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~ 374 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIR 374 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHH
Confidence 9999999888 3445555555554332 5555444
No 180
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.20 E-value=2e-06 Score=73.40 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH--------------ccccc-------
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA--------------DLDLK------- 62 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA--------------~~~l~------- 62 (170)
.+++..+|..+++++.+.++-..+.+.. || ||||||+...+.| +++.+
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~ 109 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP 109 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc
Confidence 4667899999999999988877665544 89 9999999999999 11110
Q ss_pred --------------ccccc--CceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857 63 --------------EFQSN--SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 63 --------------~v~~~--~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All 126 (170)
.++.+ .+..+++||.|.+.. ...++|-..+... ..++-++.-+|++..+-||+.
T Consensus 110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------~AQnALRRviek~----t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------DAQNALRRVIEKY----TANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred hHHHHHHHHhhccceeccccCceeEEEecchhHhhH------HHHHHHHHHHHHh----ccceEEEEeccChhhcCchhh
Confidence 12222 377999999998743 3334444433333 457777788999999999997
Q ss_pred C
Q 036857 127 R 127 (170)
Q Consensus 127 R 127 (170)
.
T Consensus 180 s 180 (360)
T KOG0990|consen 180 S 180 (360)
T ss_pred c
Confidence 4
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=2.3e-06 Score=79.43 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=76.2
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc--------------------------------------------cc-CCCcH
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY--------------------------------------------WG-PYTGK 49 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~--------------------------------------------~G-PGtGK 49 (170)
.||+...|..|-++..++.+-+.++..+ .| ||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 4677888888888888888877777666 29 99999
Q ss_pred HHHHHHHH-cccccccccc----------------------------CceeEeeechhhhccCCccchHHHHHHHHHhh-
Q 036857 50 SSLIAAMA-DLDLKEFQSN----------------------------SRSILVIEDAVTSFESNAYNSVALSALLKFVD- 99 (170)
Q Consensus 50 T~la~aiA-~~~l~~v~~~----------------------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD- 99 (170)
|+||+.|| ..+++.+..| .|..|++||||-- ....+..++..+.
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------~~~~Vdvilslv~a 413 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------PRAAVDVILSLVKA 413 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC------cHHHHHHHHHHHHh
Confidence 99999999 1121111111 1999999999843 3444455554443
Q ss_pred -chhccCCC---------------CeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 100 -GLWSSSGD---------------GRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 100 -g~~~~~~~---------------~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+-....+. -+-||+-+|... -|||.----+-..|+|..|..
T Consensus 414 ~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 414 TNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred hcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCCh
Confidence 11100001 134777777543 466631115888899988887
No 182
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.18 E-value=4e-06 Score=65.33 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=26.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhch-hcc------CCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-WSS------SGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-~~~------~~~~~~vi~tTN~ 117 (170)
...|||||||.+-. .....|++.|+.- ... ..-++-+|+|||.
T Consensus 94 ~GtL~Ld~I~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 94 GGTLFLDEIEDLPP------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp TSEEEEETGGGS-H------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ceEEeecchhhhHH------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 78999999998743 4556677766621 111 1226778888874
No 183
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.17 E-value=7.5e-06 Score=75.48 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
..+++++++++.++.+...+ +| ||||||++++++|
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la 58 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMA 58 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 46889999999888776544 69 9999999999999
No 184
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.16 E-value=1.8e-05 Score=72.62 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=51.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhh---------chhccCCCCeEEEEeCCCC---CCCCCCCCCCCccceEEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVD---------GLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDMHFH 136 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~~i~ 136 (170)
..|||+||+..+ ...+++.|++.|+ |.....+...++|+|-|.. +.|.++++ .||++++.
T Consensus 94 ~GvL~lDe~n~~------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lL--DRf~l~v~ 165 (584)
T PRK13406 94 GGVLVLAMAERL------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALA--DRLAFHLD 165 (584)
T ss_pred CCEEEecCcccC------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhH--hheEEEEE
Confidence 689999999754 5678888888874 4444456678888876543 56899999 79999999
Q ss_pred cCCCCc
Q 036857 137 LSSHTF 142 (170)
Q Consensus 137 ~~~p~~ 142 (170)
+++|+.
T Consensus 166 v~~~~~ 171 (584)
T PRK13406 166 LDGLAL 171 (584)
T ss_pred cCCCCh
Confidence 999886
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.16 E-value=4.3e-06 Score=71.03 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=41.6
Q ss_pred cc-CCCcHHHHHHHHH----ccccc-----------ccc---c-----------cCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLK-----------EFQ---S-----------NSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~-----------~v~---~-----------~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
|| ||||||.|+.|+| ..+.+ .+. . ....+|+|||+..-. .+.....
T Consensus 162 ~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~----~s~~~~~ 237 (306)
T PRK08939 162 YGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ----MSSWVRD 237 (306)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc----ccHHHHH
Confidence 79 9999999999999 11110 010 0 018899999995431 1222233
Q ss_pred HHHHHh-hchhccCCCCeEEEEeCCCC
Q 036857 93 ALLKFV-DGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 93 ~ll~~l-Dg~~~~~~~~~~vi~tTN~~ 118 (170)
.++..+ +.-. .++.-+|+|||..
T Consensus 238 ~ll~~Il~~R~---~~~~~ti~TSNl~ 261 (306)
T PRK08939 238 EVLGVILQYRM---QEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHHHHHH---HCCCeEEEECCCC
Confidence 455543 4432 2467889999944
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.16 E-value=4.8e-06 Score=64.29 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR 127 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR 127 (170)
.-|++|||+|.+ .....++||..|+.- +.++++|++|+.++.|-|.++.
T Consensus 103 ~KviiI~~ad~l------~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 103 YKVIIIDEADKL------TEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SEEEEEETGGGS-------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT
T ss_pred ceEEEeehHhhh------hHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh
Confidence 679999999976 446678899988776 4689999999999998888874
No 187
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=5.4e-06 Score=73.88 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=56.4
Q ss_pred cc-CCCcHHHHHHHHHc-c-----cccc---------------ccc------------cCceeEeeechhhhccCCccch
Q 036857 43 WG-PYTGKSSLIAAMAD-L-----DLKE---------------FQS------------NSRSILVIEDAVTSFESNAYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~-~-----~l~~---------------v~~------------~~p~il~iDEiD~~~~~~~~~~ 88 (170)
|| ||||||.|++|++. + +... +.. ....+|+|||++.+... .
T Consensus 147 ~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k----~ 222 (450)
T PRK14087 147 YGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK----E 222 (450)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC----H
Confidence 79 99999999999980 0 0100 000 11679999999977441 2
Q ss_pred HHHHHHHHHhhchhccCCCCeEEEEeCC-CCC---CCCCCCCCCCccc--eEEEcCCCCc
Q 036857 89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKD---HIDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~---~lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
.....|...++.+.. .+.-+|+|+| .|+ .+++.+.. ||. ..+.+..|+.
T Consensus 223 ~~~e~lf~l~N~~~~---~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~ 277 (450)
T PRK14087 223 KTNEIFFTIFNNFIE---NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDN 277 (450)
T ss_pred HHHHHHHHHHHHHHH---cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCH
Confidence 334455555665554 2334666666 443 34666664 774 6777888887
No 188
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.14 E-value=7.6e-06 Score=68.20 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=44.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.-|+++||+|.+.. ...+.++..+.-- +.+..+|++||.++.+-+-+.. |+ ..+.|..|+.
T Consensus 110 ~kviiidead~mt~------~A~nallk~lEep----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~ 170 (325)
T COG0470 110 YKVVIIDEADKLTE------DAANALLKTLEEP----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSR 170 (325)
T ss_pred ceEEEeCcHHHHhH------HHHHHHHHHhccC----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchH
Confidence 57999999998844 4456666655443 5688999999999988887764 33 4677776666
No 189
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.13 E-value=6.7e-06 Score=72.77 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=62.2
Q ss_pred ceeEeeechhhhccCCc------cchHHHHHHHHHhhchhccC------CCCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857 69 RSILVIEDAVTSFESNA------YNSVALSALLKFVDGLWSSS------GDGRILVMTTD----YKDHIDPVPLRPSCMD 132 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~------~~~~~~~~ll~~lDg~~~~~------~~~~~vi~tTN----~~~~lD~AllRpgR~d 132 (170)
..||||||||.++.... ...-+...||..++|..-.. ..++++|++-. .|.+|=|.|. |||-
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~P 325 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFP 325 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cccc
Confidence 67999999999996321 11235677888888753221 13556666543 5667778888 8999
Q ss_pred eEEEcCCCCc----------chHHHHHHHHHhhcCC----CCHHHHH
Q 036857 133 MHFHLSSHTF----------RHYLFEKIEERLAKIQ----ATPAEVP 165 (170)
Q Consensus 133 ~~i~~~~p~~----------~~~l~~~~~~~~~~~~----~s~a~i~ 165 (170)
.++++...+. +..+..+.++++...+ ||...+.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~ 372 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK 372 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHH
Confidence 9999999988 3345555665554332 4554443
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.6e-06 Score=77.79 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=69.8
Q ss_pred CcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------cccccccccc-------
Q 036857 24 TSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------DLDLKEFQSN------- 67 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------~~~l~~v~~~------- 67 (170)
.+|-|++-++-.+++...+ .| ||+|||.++..+| .+++..+...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 3566666666666565555 59 9999999999999 2333332221
Q ss_pred --------------CceeEeeechhhhccCCccc--hHHHHHHHH-HhhchhccCCCCeEEEEeCCC-----CCCCCCCC
Q 036857 68 --------------SRSILVIEDAVTSFESNAYN--SVALSALLK-FVDGLWSSSGDGRILVMTTDY-----KDHIDPVP 125 (170)
Q Consensus 68 --------------~p~il~iDEiD~~~~~~~~~--~~~~~~ll~-~lDg~~~~~~~~~~vi~tTN~-----~~~lD~Al 125 (170)
.+.||||||++.+.+.+... ....+.+|. .+- ....-+|+||.. .=.-|+||
T Consensus 248 EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA------RGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 248 EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA------RGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh------cCCeEEEEeccHHHHHHHhhhchHH
Confidence 18999999999999843321 122333333 221 124445555542 22569999
Q ss_pred CCCCccceEEEcCCCCc
Q 036857 126 LRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 126 lRpgR~d~~i~~~~p~~ 142 (170)
-| || ..|.+.-|+.
T Consensus 322 ~R--RF-Q~V~V~EPs~ 335 (786)
T COG0542 322 ER--RF-QKVLVDEPSV 335 (786)
T ss_pred Hh--cC-ceeeCCCCCH
Confidence 98 88 5788999998
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=7.4e-06 Score=70.69 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=47.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..|++||++|.+ +....+.||..|+.- +.++++|++|++++.|.|.++. |+ ..+.|+.|+.
T Consensus 133 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~ 193 (342)
T PRK06964 133 ARVVVLYPAEAL------NVAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAP 193 (342)
T ss_pred ceEEEEechhhc------CHHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCH
Confidence 335555666554 345678899988854 5789999999999999999886 66 6889998877
No 192
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.1e-06 Score=70.71 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=41.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCcc-ceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCM-DMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~-d~~i~~~~p~~ 142 (170)
..||++||+|.+....+ ..+-.|+..-+.. ...+.+|+.+|.. +.+|+-+.. |+ ...|.|+.-+.
T Consensus 124 ~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a 192 (366)
T COG1474 124 TVIVILDEVDALVDKDG---EVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTA 192 (366)
T ss_pred eEEEEEcchhhhccccc---hHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCH
Confidence 78999999999987433 3333333322222 3467889999854 588887763 32 23477776665
No 193
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.11 E-value=5e-06 Score=71.37 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=44.8
Q ss_pred cc-CCCcHHHHHHHHH----ccc--------------cccc-cc------------cCceeEeeechhhhccCCccchHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLD--------------LKEF-QS------------NSRSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~--------------l~~v-~~------------~~p~il~iDEiD~~~~~~~~~~~~ 90 (170)
|| ||||||.||.||| +.+ +... +. ....+|+|||+.... .....
T Consensus 189 ~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~----~t~~~ 264 (329)
T PRK06835 189 YGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK----ITEFS 264 (329)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC----CCHHH
Confidence 79 9999999999999 100 1000 00 116899999996542 23445
Q ss_pred HHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 91 LSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 91 ~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
.+.|.+.++.... .+.-+|+|||.
T Consensus 265 ~~~Lf~iin~R~~---~~k~tIiTSNl 288 (329)
T PRK06835 265 KSELFNLINKRLL---RQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHH---CCCCEEEECCC
Confidence 5677777777654 34567888884
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.3e-06 Score=70.25 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=48.9
Q ss_pred c-CCCcHHHHHHHHH---ccccccccccC------------------------------ceeEeeechhhhccCC-----
Q 036857 44 G-PYTGKSSLIAAMA---DLDLKEFQSNS------------------------------RSILVIEDAVTSFESN----- 84 (170)
Q Consensus 44 G-PGtGKT~la~aiA---~~~l~~v~~~~------------------------------p~il~iDEiD~~~~~~----- 84 (170)
| -|+|||+||+.+| ++++.-...+. ..||++||||.+....
T Consensus 104 GPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SI 183 (408)
T COG1219 104 GPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSI 183 (408)
T ss_pred CCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCc
Confidence 9 9999999999999 22222111111 8899999999999721
Q ss_pred --c-cchHHHHHHHHHhhchhccCC---------CCeEEEEeCCCC
Q 036857 85 --A-YNSVALSALLKFVDGLWSSSG---------DGRILVMTTDYK 118 (170)
Q Consensus 85 --~-~~~~~~~~ll~~lDg~~~~~~---------~~~~vi~tTN~~ 118 (170)
. ...-+..+||..+.|...+-+ .+.+-|-|||=.
T Consensus 184 TRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NIL 229 (408)
T COG1219 184 TRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNIL 229 (408)
T ss_pred ccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEccccee
Confidence 1 222356678899987753222 235666677743
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=98.09 E-value=6.1e-06 Score=68.43 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=42.1
Q ss_pred cc-CCCcHHHHHHHHH------cc-----cccc----------------cc---ccCceeEeeechhhhccCCccchHHH
Q 036857 43 WG-PYTGKSSLIAAMA------DL-----DLKE----------------FQ---SNSRSILVIEDAVTSFESNAYNSVAL 91 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA------~~-----~l~~----------------v~---~~~p~il~iDEiD~~~~~~~~~~~~~ 91 (170)
|| ||||||++|.+++ +. .... +. ...+.++++||++.... .....
T Consensus 108 ~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~----~~~~~ 183 (259)
T PRK09183 108 LGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF----SQEEA 183 (259)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC----ChHHH
Confidence 79 9999999999997 10 0000 01 11278999999976432 22333
Q ss_pred HHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 92 SALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
..|.+.++..... + -+|+|||.+
T Consensus 184 ~~lf~li~~r~~~---~-s~iiTsn~~ 206 (259)
T PRK09183 184 NLFFQVIAKRYEK---G-SMILTSNLP 206 (259)
T ss_pred HHHHHHHHHHHhc---C-cEEEecCCC
Confidence 4566667666542 2 368889843
No 196
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.07 E-value=3.2e-06 Score=66.36 Aligned_cols=68 Identities=21% Similarity=0.384 Sum_probs=41.0
Q ss_pred cc-CCCcHHHHHHHHH----ccccccc--------------ccc-----------CceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEF--------------QSN-----------SRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v--------------~~~-----------~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
+| ||||||.+|.|+| ..+.+.. ..+ ...+|+|||+-.. ........
T Consensus 53 ~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~----~~~~~~~~ 128 (178)
T PF01695_consen 53 YGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE----PLSEWEAE 128 (178)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS-------HHHHH
T ss_pred EhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee----eecccccc
Confidence 69 9999999999999 1111000 000 0889999999432 12334455
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
.+.+.+|.-.. +.-+|+|||..
T Consensus 129 ~l~~ii~~R~~----~~~tIiTSN~~ 150 (178)
T PF01695_consen 129 LLFEIIDERYE----RKPTIITSNLS 150 (178)
T ss_dssp CTHHHHHHHHH----T-EEEEEESS-
T ss_pred cchhhhhHhhc----ccCeEeeCCCc
Confidence 56677777764 23577799944
No 197
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.05 E-value=4.2e-06 Score=71.70 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=53.9
Q ss_pred cc-CCCcHHHHHHHHHc---------------ccc--ccccc----c-----------CceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMAD---------------LDL--KEFQS----N-----------SRSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~---------------~~l--~~v~~----~-----------~p~il~iDEiD~~~~~~~~~~~ 89 (170)
.| ||||||.+.+.++. .++ ..... . ...|.+|||+|.+-. .
T Consensus 63 vGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~------~ 136 (331)
T PF00493_consen 63 VGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE------D 136 (331)
T ss_dssp ECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C------H
T ss_pred ccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc------h
Confidence 49 99999999999881 111 11111 0 088999999998733 3
Q ss_pred HHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEc-CCCCc
Q 036857 90 ALSALLKFVDG---------LWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHL-SSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~-~~p~~ 142 (170)
....+++.|+. +....+...-|++|+|+.. .++++++. |||..+.+ +.|+.
T Consensus 137 ~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~ 210 (331)
T PF00493_consen 137 DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDE 210 (331)
T ss_dssp HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-
T ss_pred HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEecccccc
Confidence 35666677653 2221233567999999776 58999995 99999876 44554
No 198
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.04 E-value=3.3e-05 Score=65.98 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=38.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-c------cCCCCeEEEEeCCCC-------CCCCCCCCCCCcc-ce
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-S------SSGDGRILVMTTDYK-------DHIDPVPLRPSCM-DM 133 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~-d~ 133 (170)
...|||||+|.+-. .....|++.++.-. . ....++-+|+||+.. ..+.+.|.. || ..
T Consensus 101 gGtL~l~~i~~L~~------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~ 172 (326)
T PRK11608 101 GGTLFLDELATAPM------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFD 172 (326)
T ss_pred CCeEEeCChhhCCH------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCC
Confidence 56899999998733 34455666664321 1 111257788888742 344455554 66 45
Q ss_pred EEEcCCCCc
Q 036857 134 HFHLSSHTF 142 (170)
Q Consensus 134 ~i~~~~p~~ 142 (170)
.|++|.--.
T Consensus 173 ~i~lPpLRe 181 (326)
T PRK11608 173 VVQLPPLRE 181 (326)
T ss_pred EEECCChhh
Confidence 677765544
No 199
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.02 E-value=3.5e-05 Score=71.09 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=52.2
Q ss_pred CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-----------cccc---------ccccc----
Q 036857 24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-----------DLDL---------KEFQS---- 66 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-----------~~~l---------~~v~~---- 66 (170)
+|+++++....-+++...+ +| |||||+++|++|. .++. +.++.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~ 402 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRT 402 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCc
Confidence 5777776554444343333 69 9999999999997 1111 11111
Q ss_pred ------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-ccCC------CCeEEEEeCCCC
Q 036857 67 ------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SSSG------DGRILVMTTDYK 118 (170)
Q Consensus 67 ------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~~~------~~~~vi~tTN~~ 118 (170)
.....|||||||.+-. .....|+..++.-. ...+ -++-+|+|||..
T Consensus 403 ~~~~~~~g~~~~a~~GtL~ldei~~l~~------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYLSP------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CccCCCCCceeECCCCEEEEcChhhCCH------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 1167899999998733 34455666664321 1001 146688888843
No 200
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.01 E-value=1.3e-05 Score=73.99 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=61.8
Q ss_pred c-CCCcHHHHHHHHH----------ccccccccccC----------------------ceeEeeechhhhccCCccchHH
Q 036857 44 G-PYTGKSSLIAAMA----------DLDLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 44 G-PGtGKT~la~aiA----------~~~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~~ 90 (170)
| ||||||.+.+.++ +.+-+.+..++ ..|-+|||+|++-. ..+..
T Consensus 469 GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d---StrSv 545 (804)
T KOG0478|consen 469 GDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD---STRSV 545 (804)
T ss_pred cCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH---HHHHH
Confidence 9 9999999999998 11111111111 67778999999833 22333
Q ss_pred HHHHHHH------hhchhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEE-cCCCCc
Q 036857 91 LSALLKF------VDGLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFH-LSSHTF 142 (170)
Q Consensus 91 ~~~ll~~------lDg~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~-~~~p~~ 142 (170)
+.+.+++ .-|+..+.+...-|+|+.|+.+ .|+|.|++ |||..+- ++.||+
T Consensus 546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE 615 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDE 615 (804)
T ss_pred HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcch
Confidence 3333332 2355555556677999999554 68999998 9998765 566776
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.00 E-value=2.4e-05 Score=66.96 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=26.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~ 117 (170)
...|||||+|.+-. .....|+..++.-. .....++-+|+|||.
T Consensus 94 gGtL~Ldei~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 94 GGTLFLDELATASL------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred CCEEEeCChHhCCH------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 67899999998733 44455666654321 111245778888874
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.2e-05 Score=72.87 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=66.2
Q ss_pred cc-CCCcHHHHHHHHH-cccccc-----------------------ccccC----ceeEeeechhhhcc----CCccchH
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKE-----------------------FQSNS----RSILVIEDAVTSFE----SNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~-----------------------v~~~~----p~il~iDEiD~~~~----~~~~~~~ 89 (170)
.| ||+|||.||..+| +.++.- ++.++ -+||++||++.+.. ....+..
T Consensus 544 ~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~ 623 (744)
T KOG0741|consen 544 EGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNL 623 (744)
T ss_pred ecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHH
Confidence 49 9999999999999 222221 11121 78999999999987 2334455
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC-CCCCCccceEEEcCCCCcchHHHHH
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV-PLRPSCMDMHFHLSSHTFRHYLFEK 149 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A-llRpgR~d~~i~~~~p~~~~~l~~~ 149 (170)
.+.+|+..+-..... +...+|++||...+-|-.. ++ ..|+-.|++|.-+..+++.+.
T Consensus 624 vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~--~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 624 VLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGIL--DCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred HHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHH--HhhhheeecCccCchHHHHHH
Confidence 555566656555432 3356777788766644322 23 368889998877664444443
No 203
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.98 E-value=6e-05 Score=68.19 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
..|+.+++....-+++...+ +| ||||||++|++|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih 240 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHH
Confidence 46788887766555555444 69 9999999999998
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=97.95 E-value=6.2e-05 Score=71.68 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred eeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 70 SILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 70 ~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.|+||||+|.+- ....+.|+..|+.- +..+.+|++||.++.+.+++.. |+ ..+.|..|+.
T Consensus 632 KVvIIDEaD~Lt------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~ 691 (846)
T PRK04132 632 KIIFLDEADALT------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRD 691 (846)
T ss_pred EEEEEECcccCC------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCH
Confidence 599999999883 34567777777664 3588899999999999999885 64 7788988876
No 205
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.94 E-value=4.8e-05 Score=70.53 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 20 EHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
.+|..|++++++++.++.+...+ +| ||||||++|+++|
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~ 71 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMA 71 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHH
Confidence 45778999999999888776544 69 9999999999999
No 206
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.94 E-value=3e-05 Score=70.34 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=38.2
Q ss_pred CcccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857 13 YWNSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 13 ~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA 57 (170)
.=.|++...|.+.+++++++..-+++...+ .| ||||||++++.+|
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La 66 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLA 66 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHH
Confidence 335677999999999999997777766655 49 9999999999999
No 207
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.89 E-value=4.7e-05 Score=74.71 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=32.8
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
..+....+..++++++.+...+++...+ || +|+|||++|++++
T Consensus 173 ~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~ 228 (1153)
T PLN03210 173 GKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALF 228 (1153)
T ss_pred HhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHH
Confidence 3445556677888888777766665443 89 9999999999997
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.89 E-value=2e-05 Score=65.21 Aligned_cols=69 Identities=17% Similarity=0.337 Sum_probs=42.5
Q ss_pred cc-CCCcHHHHHHHHH----ccccccccc--------------------------cCceeEeeechhhhccCCccchHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEFQS--------------------------NSRSILVIEDAVTSFESNAYNSVAL 91 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v~~--------------------------~~p~il~iDEiD~~~~~~~~~~~~~ 91 (170)
+| ||||||.||-||| ..+.+.++. ....+|+|||+=.. ..+...-
T Consensus 111 ~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~----~~~~~~~ 186 (254)
T COG1484 111 LGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE----PFSQEEA 186 (254)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc----cCCHHHH
Confidence 69 9999999999999 111111111 11789999999432 1222334
Q ss_pred HHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 92 SALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
+.+.+.|+....+ ... ++|||.+.
T Consensus 187 ~~~~q~I~~r~~~---~~~-~~tsN~~~ 210 (254)
T COG1484 187 DLLFQLISRRYES---RSL-IITSNLSF 210 (254)
T ss_pred HHHHHHHHHHHhh---ccc-eeecCCCh
Confidence 4555666666542 334 99999543
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.87 E-value=2e-05 Score=58.77 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=39.5
Q ss_pred cc-CCCcHHHHHHHHHc------ccccc----------ccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857 43 WG-PYTGKSSLIAAMAD------LDLKE----------FQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS 105 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~------~~l~~----------v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~ 105 (170)
+| |||||+++|++|.. -.+.. +....+..|+|+|+|.+-. .....+++.++...
T Consensus 27 ~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~~------~~Q~~L~~~l~~~~--- 97 (138)
T PF14532_consen 27 TGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLSP------EAQRRLLDLLKRQE--- 97 (138)
T ss_dssp ECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-H------HHHHHHHHHHHHCT---
T ss_pred EcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCCH------HHHHHHHHHHHhcC---
Confidence 69 99999999999991 01111 1111278999999998733 34455555555432
Q ss_pred CCCeEEEEeCC
Q 036857 106 GDGRILVMTTD 116 (170)
Q Consensus 106 ~~~~~vi~tTN 116 (170)
..++-+|+||.
T Consensus 98 ~~~~RlI~ss~ 108 (138)
T PF14532_consen 98 RSNVRLIASSS 108 (138)
T ss_dssp TTTSEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 23445555554
No 210
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00016 Score=61.91 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=47.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..|++||++|.+ +....+.||..++.- +.++++|.+|+.++.|-|.++. |.- .+.|+.|+.
T Consensus 109 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~ 169 (319)
T PRK06090 109 YRLFVIEPADAM------NESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPST 169 (319)
T ss_pred ceEEEecchhhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCH
Confidence 468888888876 345678888888774 5689999999999999998875 553 778888877
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00013 Score=62.54 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=46.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.-|++||++|.+ +....+.||..|+.- +.++++|.+|+.++.|-|.++. |+ ..+.|+.|+.
T Consensus 114 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~ 174 (319)
T PRK08769 114 AQVVIVDPADAI------NRAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPA 174 (319)
T ss_pred cEEEEeccHhhh------CHHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCH
Confidence 357888888766 345678888877664 4688899999999999999885 55 4567887776
No 212
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.84 E-value=2e-05 Score=62.22 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=42.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~ 141 (170)
.++|+|||+..+++.+..........++.+.... ..+.-++++|-.+..||+.+++ .++.++++..++
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR---h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR---HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHHHGGGGCC---CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred CcEEEEECChhhcCCCccccccchHHHHHHHHhC---cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 7899999999999865553222334445554443 4578889999999999998874 899999887765
No 213
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.81 E-value=0.00016 Score=65.47 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 20 EHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
....+|+++++....-+++...+ +| +||||+++|+++.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH 248 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACH 248 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHH
Confidence 34557888887766433343333 79 9999999999996
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=6.8e-05 Score=64.35 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=47.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.-|++||++|.+ +....+.||..|+.- +.++++|.+|+.++.|.|.++. |. ..+.|..|+.
T Consensus 108 ~KV~iI~~a~~m------~~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~ 168 (325)
T PRK06871 108 NKVVYIQGAERL------TEAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEE 168 (325)
T ss_pred ceEEEEechhhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCH
Confidence 568888888876 345678888888764 5689999999999999999874 54 4567877766
No 215
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.78 E-value=0.00013 Score=67.90 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
..|+++++.....+.+...+ +| ||||||++|++|.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih 420 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 420 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHH
Confidence 46777877766655554444 59 9999999999998
No 216
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.78 E-value=5.6e-05 Score=68.41 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=60.5
Q ss_pred CCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH------ccccccccccC-----------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA------DLDLKEFQSNS----------- 68 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA------~~~l~~v~~~~----------- 68 (170)
.....+|+++++....-.++...+ .| +||||.++|++|. .-.+..+.+.+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHh
Confidence 455668999988776666555544 69 9999999999999 11122221111
Q ss_pred -----------------------ceeEeeechhhhccCCccchHHHHHHHHHhh-------chhccCCCCeEEEEeCCC
Q 036857 69 -----------------------RSILVIEDAVTSFESNAYNSVALSALLKFVD-------GLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 69 -----------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-------g~~~~~~~~~~vi~tTN~ 117 (170)
..-||+|||-.+ .-.....||..|. |-....+-++-||+|||+
T Consensus 318 Gye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem------pl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 318 GYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM------PLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred CcCCccccccccCCCCcceeeccCCeEEehhhccC------CHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence 678999999654 3455566776654 222222346789999994
No 217
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.78 E-value=9e-05 Score=54.79 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.++
T Consensus 5 ~G~~G~GKT~l~~~i~ 20 (165)
T cd01120 5 FGPTGSGKTTLALQLA 20 (165)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 69 9999999999998
No 218
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.77 E-value=4.9e-05 Score=61.90 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=43.9
Q ss_pred cc-CCCcHHHHHHHHHc--------c---------ccccccc--------------------cCceeEeeechhhhcc--
Q 036857 43 WG-PYTGKSSLIAAMAD--------L---------DLKEFQS--------------------NSRSILVIEDAVTSFE-- 82 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~--------~---------~l~~v~~--------------------~~p~il~iDEiD~~~~-- 82 (170)
|| ||+|||++|+.+++ - +...+.. +....|+||.++.+..
T Consensus 18 yG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~ 97 (220)
T TIGR01618 18 YGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLW 97 (220)
T ss_pred ECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHH
Confidence 89 99999999999991 0 0100110 1167999999998765
Q ss_pred -------------CCccchHHHHHHHHHhhchhccCCCCeEEEE
Q 036857 83 -------------SNAYNSVALSALLKFVDGLWSSSGDGRILVM 113 (170)
Q Consensus 83 -------------~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~ 113 (170)
....-...-..|++.+..+.+ .+.++++++
T Consensus 98 ~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tA 140 (220)
T TIGR01618 98 LENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATA 140 (220)
T ss_pred HHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 111223445567777777765 255666655
No 219
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.74 E-value=4e-05 Score=70.49 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=59.5
Q ss_pred c-CCCcHHHHHHHHH-----------------ccccccccccC---------------ceeEeeechhhhccCCccchHH
Q 036857 44 G-PYTGKSSLIAAMA-----------------DLDLKEFQSNS---------------RSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 44 G-PGtGKT~la~aiA-----------------~~~l~~v~~~~---------------p~il~iDEiD~~~~~~~~~~~~ 90 (170)
| ||||||.+.++.+ ++-.+-+++.. ..|-.|||+|.+-. ..
T Consensus 385 GDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~------~d 458 (764)
T KOG0480|consen 385 GDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV------KD 458 (764)
T ss_pred CCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh------Hh
Confidence 9 9999999999999 12222222211 77888999998833 12
Q ss_pred HHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceE-EEcCCCCc
Q 036857 91 LSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMH-FHLSSHTF 142 (170)
Q Consensus 91 ~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~-i~~~~p~~ 142 (170)
.-++.++|+ |+...-+...-|+||+|+.. .++++++. |||.. |-++-|++
T Consensus 459 qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE 531 (764)
T KOG0480|consen 459 QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNE 531 (764)
T ss_pred HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCch
Confidence 234445554 33322233445899999765 68999996 99965 45667777
No 220
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.72 E-value=4.6e-05 Score=66.25 Aligned_cols=70 Identities=21% Similarity=0.461 Sum_probs=42.7
Q ss_pred cc-CCCcHHHHHHHHH-ccc-------------------cccccccC-------------ceeEeeechhhhccCCccch
Q 036857 43 WG-PYTGKSSLIAAMA-DLD-------------------LKEFQSNS-------------RSILVIEDAVTSFESNAYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~-------------------l~~v~~~~-------------p~il~iDEiD~~~~~~~~~~ 88 (170)
|| +|+|||+|.-.+. .+. +....... ..||+|||+..- .-...
T Consensus 68 ~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~---DiaDA 144 (362)
T PF03969_consen 68 WGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT---DIADA 144 (362)
T ss_pred ECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc---chhHH
Confidence 89 9999999998887 111 11111010 559999999532 11223
Q ss_pred HHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC
Q 036857 89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI 121 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l 121 (170)
..+..|++. +.. .++++|+|+| .|+.|
T Consensus 145 mil~rLf~~---l~~---~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 145 MILKRLFEA---LFK---RGVVLVATSNRPPEDL 172 (362)
T ss_pred HHHHHHHHH---HHH---CCCEEEecCCCChHHH
Confidence 344445443 343 5999999999 55544
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=5.6e-05 Score=64.75 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=43.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..|+++|++|.+ .....+.++..|+... .++.+|++|+.++.+.+.+.+ |+ ..+.|+.|+.
T Consensus 114 ~kV~iiEp~~~L------d~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~ 174 (325)
T PRK08699 114 LRVILIHPAESM------NLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSH 174 (325)
T ss_pred ceEEEEechhhC------CHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCH
Confidence 457777777765 3355677777776652 357788899999999998875 33 5677777776
No 222
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.71 E-value=4.6e-05 Score=70.90 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred c-CCCcHHHHHHHHH---------------cccc--ccccc--------cC-------ceeEeeechhhhccCCccchHH
Q 036857 44 G-PYTGKSSLIAAMA---------------DLDL--KEFQS--------NS-------RSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 44 G-PGtGKT~la~aiA---------------~~~l--~~v~~--------~~-------p~il~iDEiD~~~~~~~~~~~~ 90 (170)
| ||||||.+-|.++ ..+| +-+.. .+ +.|.+|||+|.+-. ..
T Consensus 326 GDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------~d 399 (682)
T COG1241 326 GDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------ED 399 (682)
T ss_pred CCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh------HH
Confidence 9 9999999999999 1111 11111 11 88999999998732 33
Q ss_pred HHHHHHHhh---------chhccCCCCeEEEEeCCCCC-------------CCCCCCCCCCccceEEEcCC-CCc
Q 036857 91 LSALLKFVD---------GLWSSSGDGRILVMTTDYKD-------------HIDPVPLRPSCMDMHFHLSS-HTF 142 (170)
Q Consensus 91 ~~~ll~~lD---------g~~~~~~~~~~vi~tTN~~~-------------~lD~AllRpgR~d~~i~~~~-p~~ 142 (170)
.+.+.++|+ |+...-+...-|+||+|+.. .++++|+. |||..+-+.- |+.
T Consensus 400 r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~ 472 (682)
T COG1241 400 RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDE 472 (682)
T ss_pred HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCc
Confidence 344555554 22111123445889999666 68899996 9998877653 665
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=8.2e-05 Score=63.99 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=48.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.-|++||++|.+ +....+.||..|+.- +.+.++|.+|++++.|.|-++. |.- .+.|+.|+.
T Consensus 109 ~kV~iI~~ae~m------~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~ 169 (334)
T PRK07993 109 AKVVWLPDAALL------TDAAANALLKTLEEP----PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPE 169 (334)
T ss_pred ceEEEEcchHhh------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCH
Confidence 568888888876 345678898888764 5689999999999999999885 655 578888776
No 224
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.69 E-value=8.9e-05 Score=53.75 Aligned_cols=15 Identities=47% Similarity=0.742 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.++
T Consensus 10 ~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 10 SGPPGSGKTTLIKRLA 25 (131)
T ss_dssp EE-TTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 79 9999999999999
No 225
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00017 Score=62.47 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred ceeEeeechhhhccCCccch------HHHHHHHHHhhchhccCC------CCeEEEEeCC----CCCCCCCCCCCCCccc
Q 036857 69 RSILVIEDAVTSFESNAYNS------VALSALLKFVDGLWSSSG------DGRILVMTTD----YKDHIDPVPLRPSCMD 132 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~------~~~~~ll~~lDg~~~~~~------~~~~vi~tTN----~~~~lD~AllRpgR~d 132 (170)
..|+||||||.++...+.+. -+...+|-.+.|..-+.. +.+++|++-. .|.+|=|.|. |||-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 78999999999997332111 234556666666543211 2345665543 7778888887 8999
Q ss_pred eEEEcCCCCc----------chHHHHHHHHHhh
Q 036857 133 MHFHLSSHTF----------RHYLFEKIEERLA 155 (170)
Q Consensus 133 ~~i~~~~p~~----------~~~l~~~~~~~~~ 155 (170)
.++++...+. ...+..+.++++.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlk 361 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLK 361 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999998877 3344455555554
No 226
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.61 E-value=0.00029 Score=61.83 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=27.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~ 117 (170)
..+|||||+|.+-. .....|+..++.-. .....++.+|+|||.
T Consensus 238 ~gtl~ld~i~~l~~------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~ 287 (457)
T PRK11361 238 EGTLLLDEIGEMPL------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287 (457)
T ss_pred CCEEEEechhhCCH------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCC
Confidence 56899999998743 34556666665321 111235678888884
No 227
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00016 Score=64.32 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=62.1
Q ss_pred cc-CCCcHHHHHHHHH---cccccccccc------------------------------CceeEeeechhhhcc------
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSN------------------------------SRSILVIEDAVTSFE------ 82 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~------------------------------~p~il~iDEiD~~~~------ 82 (170)
.| .|+|||+||+.+| ++.+.--..+ ...|+||||+|.+..
T Consensus 232 lGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~ 311 (564)
T KOG0745|consen 232 LGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIH 311 (564)
T ss_pred ECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccc
Confidence 59 9999999999999 2222111110 188999999999995
Q ss_pred -CCc-cchHHHHHHHHHhhchhcc---------CCCCeEEEEeCC-------CCCCCCCCCCCCCcc-ceEEEcCCCCc
Q 036857 83 -SNA-YNSVALSALLKFVDGLWSS---------SGDGRILVMTTD-------YKDHIDPVPLRPSCM-DMHFHLSSHTF 142 (170)
Q Consensus 83 -~~~-~~~~~~~~ll~~lDg~~~~---------~~~~~~vi~tTN-------~~~~lD~AllRpgR~-d~~i~~~~p~~ 142 (170)
.+. ...-+...||..++|..-. ...+.+.|-||| ---.||.-+.| |+ |..+-|+.|+.
T Consensus 312 ~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 312 TSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFGAPSS 388 (564)
T ss_pred ccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccCCCCC
Confidence 111 2233566688888765311 123456666666 34466766666 54 46788888844
No 228
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00013 Score=69.65 Aligned_cols=68 Identities=31% Similarity=0.427 Sum_probs=47.8
Q ss_pred c-CCCcHHHHHHHHH-----------ccccccccc------c--------------------CceeEeeechhhhccCCc
Q 036857 44 G-PYTGKSSLIAAMA-----------DLDLKEFQS------N--------------------SRSILVIEDAVTSFESNA 85 (170)
Q Consensus 44 G-PGtGKT~la~aiA-----------~~~l~~v~~------~--------------------~p~il~iDEiD~~~~~~~ 85 (170)
| .|+|||-+|+|+| .++++.... . ..+||||||||.
T Consensus 598 GpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk------ 671 (898)
T KOG1051|consen 598 GPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK------ 671 (898)
T ss_pred CCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh------
Confidence 9 9999999999999 455554111 1 178999999985
Q ss_pred cchHHHHHHHHHhhchhc--cC-----CCCeEEEEeCCC
Q 036857 86 YNSVALSALLKFVDGLWS--SS-----GDGRILVMTTDY 117 (170)
Q Consensus 86 ~~~~~~~~ll~~lDg~~~--~~-----~~~~~vi~tTN~ 117 (170)
.....++.|+..+|.-.- +. -.+++||||+|.
T Consensus 672 Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 672 AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 345677778888874321 11 136899999884
No 229
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.56 E-value=0.00017 Score=60.30 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=36.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHh-h--chhcc------CCCCeEEEEeCCCCC---CCCCCCCCCCccceEEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFV-D--GLWSS------SGDGRILVMTTDYKD---HIDPVPLRPSCMDMHFH 136 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~l-D--g~~~~------~~~~~~vi~tTN~~~---~lD~AllRpgR~d~~i~ 136 (170)
.+|+|+||+..-..+. .......+||.++ | |.... .-.++.+++|+|... .|++-++ |.-..+.
T Consensus 101 ~lv~fiDDlN~p~~d~-ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~---r~f~i~~ 176 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDK-YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL---RHFNILN 176 (272)
T ss_dssp EEEEEEETTT-S---T-TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH---TTEEEEE
T ss_pred EEEEEecccCCCCCCC-CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh---hheEEEE
Confidence 7899999997655433 3333345666553 3 22211 113567788887532 4667676 4446788
Q ss_pred cCCCCc
Q 036857 137 LSSHTF 142 (170)
Q Consensus 137 ~~~p~~ 142 (170)
++.|+.
T Consensus 177 ~~~p~~ 182 (272)
T PF12775_consen 177 IPYPSD 182 (272)
T ss_dssp ----TC
T ss_pred ecCCCh
Confidence 999988
No 230
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.55 E-value=0.00026 Score=64.37 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=27.0
Q ss_pred CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
...|+++++....-+++...+ .| |||||+++|++|.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH 256 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIH 256 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHH
Confidence 356888887766555454444 59 9999999999998
No 231
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00023 Score=58.85 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=13.9
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +||||||+-|.||
T Consensus 36 GpSGcGKSTLLriiA 50 (248)
T COG1116 36 GPSGCGKSTLLRLIA 50 (248)
T ss_pred CCCCCCHHHHHHHHh
Confidence 9 9999999999999
No 232
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.52 E-value=0.00068 Score=55.26 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.++
T Consensus 49 ~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 49 TGEVGAGKTTLIRNLL 64 (269)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 79 9999999999999
No 233
>PF05729 NACHT: NACHT domain
Probab=97.52 E-value=0.00027 Score=52.65 Aligned_cols=15 Identities=47% Similarity=0.731 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 6 ~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 6 SGEPGSGKSTLLRKLA 21 (166)
T ss_pred ECCCCCChHHHHHHHH
Confidence 49 9999999999999
No 234
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.47 E-value=0.00017 Score=61.41 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=23.7
Q ss_pred ccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH
Q 036857 28 IATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 28 v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA 57 (170)
+.+++-+++.++..+ +| |||||+..++.||
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA 131 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIA 131 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHH
Confidence 456666666666655 59 9999999999999
No 235
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.47 E-value=0.00017 Score=66.94 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=31.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
++||+|||+|.++... ..-|-+.+|..... +...+||+-.|.-+.
T Consensus 509 ~~VvLiDElD~Lvtr~------QdVlYn~fdWpt~~-~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRS------QDVLYNIFDWPTLK-NSKLVVIAIANTMDL 553 (767)
T ss_pred CEEEEeccHHHHhccc------HHHHHHHhcCCcCC-CCceEEEEecccccC
Confidence 9999999999997722 23456778877653 556777777775543
No 236
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=0.00016 Score=56.02 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=43.8
Q ss_pred cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
.| ||+|||++|+.|+ .+++..+ ++|.++-.. .........++. .+.. .++ .|+-.|.
T Consensus 7 ~G~~GsGKSTlak~L~~~l~~~~~-----------~lD~l~~~~~w~~~~~~~~~~~~~---~~~~--~~~--wVidG~~ 68 (167)
T PRK08118 7 IGSGGSGKSTLARQLGEKLNIPVH-----------HLDALFWKPNWEGVPKEEQITVQN---ELVK--EDE--WIIDGNY 68 (167)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCce-----------ecchhhcccCCcCCCHHHHHHHHH---HHhc--CCC--EEEeCCc
Confidence 59 9999999999999 4444322 122222100 111112222222 2222 122 4556677
Q ss_pred CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 ~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
...++..+- +.|..|.+..|..
T Consensus 69 ~~~~~~~l~---~~d~vi~Ld~p~~ 90 (167)
T PRK08118 69 GGTMDIRLN---AADTIIFLDIPRT 90 (167)
T ss_pred chHHHHHHH---hCCEEEEEeCCHH
Confidence 766765543 7899999998866
No 237
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.41 E-value=0.0013 Score=57.79 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +||||+++|+++.
T Consensus 168 ~Ge~GtGK~~lA~~ih 183 (445)
T TIGR02915 168 LGESGTGKEVLARALH 183 (445)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 59 9999999999997
No 238
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.41 E-value=0.0011 Score=58.58 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=36.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhc-------cCCCCeEEEEeCCCC-------CCCCCCCCCCCcc-ce
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS-------SSGDGRILVMTTDYK-------DHIDPVPLRPSCM-DM 133 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~-------~~~~~~~vi~tTN~~-------~~lD~AllRpgR~-d~ 133 (170)
...+||||+|.+-. .....|+..++.-.- ....++-+|+||+.. ..+.+.|.. |+ ..
T Consensus 233 ~Gtl~l~~i~~l~~------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~ 304 (469)
T PRK10923 233 GGTLFLDEIGDMPL------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVI 304 (469)
T ss_pred CCEEEEeccccCCH------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcce
Confidence 56789999998743 334556666653210 001245788888742 234444443 55 45
Q ss_pred EEEcCCCCc
Q 036857 134 HFHLSSHTF 142 (170)
Q Consensus 134 ~i~~~~p~~ 142 (170)
.|++|.--.
T Consensus 305 ~i~~PpLre 313 (469)
T PRK10923 305 RVHLPPLRE 313 (469)
T ss_pred eecCCCccc
Confidence 666655444
No 239
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.40 E-value=0.00045 Score=62.38 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=24.3
Q ss_pred CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
.++.+++....-+++...+ +| +||||+++|++|.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih 231 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIH 231 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence 4555666555554444443 69 9999999999998
No 240
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.38 E-value=0.0014 Score=57.13 Aligned_cols=14 Identities=50% Similarity=0.786 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||||||.+|-+||
T Consensus 72 GppgTGKTAlA~gIa 86 (450)
T COG1224 72 GPPGTGKTALAMGIA 86 (450)
T ss_pred CCCCCcHHHHHHHHH
Confidence 9 9999999999999
No 241
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.38 E-value=0.00044 Score=60.46 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=24.8
Q ss_pred cccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH
Q 036857 25 SNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA 57 (170)
.+-++++.+.++...-.+ -| ||||||.+|-++|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia 71 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIA 71 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHH
Confidence 567788888887643222 29 9999999999999
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.36 E-value=0.00051 Score=52.80 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=25.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
|.++++|++-.+... ........+...+..+.. .++.+|+++....
T Consensus 96 ~~~lviD~~~~~~~~--~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~ 141 (187)
T cd01124 96 AKRVVIDSVSGLLLM--EQSTARLEIRRLLFALKR---FGVTTLLTSEQSG 141 (187)
T ss_pred CCEEEEeCcHHHhhc--ChHHHHHHHHHHHHHHHH---CCCEEEEEecccc
Confidence 889999999877552 112222333444444443 3566666665443
No 243
>PF13173 AAA_14: AAA domain
Probab=97.33 E-value=0.00051 Score=50.51 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|||||++++.++
T Consensus 8 ~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 8 TGPRGVGKTTLLKQLA 23 (128)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999999
No 244
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00092 Score=59.04 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=56.4
Q ss_pred cc-CCCcHHHHHHHHH------cccccccccc------------------------CceeEeeechhhhccCCccchHHH
Q 036857 43 WG-PYTGKSSLIAAMA------DLDLKEFQSN------------------------SRSILVIEDAVTSFESNAYNSVAL 91 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA------~~~l~~v~~~------------------------~p~il~iDEiD~~~~~~~~~~~~~ 91 (170)
|| .|.|||.|++|++ ..+...+... .-.+++|||++.+.+.. .+.
T Consensus 119 ~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~----~~q 194 (408)
T COG0593 119 YGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE----RTQ 194 (408)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh----hHH
Confidence 79 9999999999999 1111111111 24599999999886632 224
Q ss_pred HHHHHHhhchhccCCCCeEEEEeCCCCCCCC---CCCCCCCccc--eEEEcCCCCc
Q 036857 92 SALLKFVDGLWSSSGDGRILVMTTDYKDHID---PVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD---~AllRpgR~d--~~i~~~~p~~ 142 (170)
.+|...+..+.. .++.+++.+-..|..+. +-|.. ||. ..+++..|+.
T Consensus 195 eefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 195 EEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCH
Confidence 445555555544 23344444445666554 55553 776 6777778887
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=97.31 E-value=0.0012 Score=58.00 Aligned_cols=54 Identities=7% Similarity=-0.023 Sum_probs=31.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-cc------CCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-SS------SGDGRILVMTTDYKDHIDPVPLRPSCM 131 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-~~------~~~~~~vi~tTN~~~~lD~AllRpgR~ 131 (170)
...|||||+|.+-. .....|+..++.-. .. ...++.+|+||+. .++.++. .|+|
T Consensus 229 ~gtl~l~~i~~l~~------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~-~~~f 289 (444)
T PRK15115 229 GGTLFLDEIGDMPA------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMA-RGEF 289 (444)
T ss_pred CCEEEEEccccCCH------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHH-cCCc
Confidence 67899999998743 33455666654321 10 0125688888885 2444443 3666
No 246
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.30 E-value=0.00055 Score=62.46 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.4
Q ss_pred CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
.+|+++++....-+++...+ .| |||||+++|++|.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH 263 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIH 263 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence 36888888765555554443 59 9999999999985
No 247
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00018 Score=55.81 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=43.6
Q ss_pred cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
.| ||+|||++|+.++ ..++..+ -+|.+ .-..+.......+++..+..... + +. .|+-.|+...
T Consensus 6 ~G~~GsGKSTla~~l~~~~~~~~i--------~~D~~---~~~~~~~~~~~~~~~~~~~~~~~--~-~~-wIidg~~~~~ 70 (171)
T PRK07261 6 IGYSGSGKSTLARKLSQHYNCPVL--------HLDTL---HFQPNWQERDDDDMIADISNFLL--K-HD-WIIDGNYSWC 70 (171)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCeE--------ecCCE---EeccccccCCHHHHHHHHHHHHh--C-CC-EEEcCcchhh
Confidence 59 9999999999998 3333222 12222 11111111222334444444433 2 33 4444555443
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+-+..+ .+.|..|.+..|-.
T Consensus 71 ~~~~~l--~~ad~vI~Ld~p~~ 90 (171)
T PRK07261 71 LYEERM--QEADQIIFLNFSRF 90 (171)
T ss_pred hHHHHH--HHCCEEEEEcCCHH
Confidence 322333 27899999999866
No 248
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.28 E-value=0.00072 Score=53.62 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=23.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
..+|++||+-.+ ....+..++..+... +..+++++-.+....+
T Consensus 94 ~~vliVDEasmv------~~~~~~~ll~~~~~~----~~klilvGD~~QL~pV 136 (196)
T PF13604_consen 94 KDVLIVDEASMV------DSRQLARLLRLAKKS----GAKLILVGDPNQLPPV 136 (196)
T ss_dssp TSEEEESSGGG-------BHHHHHHHHHHS-T-----T-EEEEEE-TTSHHHC
T ss_pred ccEEEEeccccc------CHHHHHHHHHHHHhc----CCEEEEECCcchhcCC
Confidence 479999999544 234455555544431 4467777777744333
No 249
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.26 E-value=0.002 Score=55.22 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=36.9
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC-------------CCCCCCCCCCCCccceEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY-------------KDHIDPVPLRPSCMDMHF 135 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~-------------~~~lD~AllRpgR~d~~i 135 (170)
|.|+|+||+..+- -.-++-|-..++.- -..+||+|||+ |+-+++.++ +|+-..=
T Consensus 297 PGVLFIDEVhMLD------iEcFTyL~kalES~-----iaPivifAsNrG~~~irGt~d~~sPhGip~dll--DRl~Iir 363 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD------IECFTYLHKALESP-----IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLL--DRLLIIR 363 (456)
T ss_pred CcceEeeehhhhh------hHHHHHHHHHhcCC-----CCceEEEecCCcceeecCCcCCCCCCCCCHHHh--hheeEEe
Confidence 9999999986541 11222233334332 34467777773 556777777 4776666
Q ss_pred EcCCCCc
Q 036857 136 HLSSHTF 142 (170)
Q Consensus 136 ~~~~p~~ 142 (170)
.++|++.
T Consensus 364 t~~y~~~ 370 (456)
T KOG1942|consen 364 TLPYDEE 370 (456)
T ss_pred eccCCHH
Confidence 6677666
No 250
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.24 E-value=0.0018 Score=57.06 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +||||+++|+++.
T Consensus 163 ~Ge~GtGK~~~A~~ih 178 (463)
T TIGR01818 163 NGESGTGKELVARALH 178 (463)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999997
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.22 E-value=0.0022 Score=52.54 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=47.8
Q ss_pred cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHH-hhc
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKF-VDG 100 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~-lDg 100 (170)
+| +|||||.++|++| +..+..+.... .+-++|||++.+-. ..-..+++.+.. .+.
T Consensus 38 ~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~---~vLS~i~~~i~~i~~a 114 (231)
T PF12774_consen 38 SGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE---EVLSVISQQIQSIQDA 114 (231)
T ss_dssp ESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH---HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH---HHHHHHHHHHHHHHHh
Confidence 59 9999999999999 22222221111 88999999998732 111122222222 222
Q ss_pred hhcc------------CCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 101 LWSS------------SGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 101 ~~~~------------~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+... ...+.-+++|.| ....||+.+. .+-+-+.+..||.
T Consensus 115 l~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk---~lFRpvam~~PD~ 169 (231)
T PF12774_consen 115 LRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLK---ALFRPVAMMVPDL 169 (231)
T ss_dssp HHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHC---TTEEEEE--S--H
T ss_pred hcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHH---HHhheeEEeCCCH
Confidence 2221 011234667777 3457888876 6778999999997
No 252
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.21 E-value=0.0011 Score=59.41 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=52.5
Q ss_pred CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH------cccccc--------------cccc---
Q 036857 24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA------DLDLKE--------------FQSN--- 67 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA------~~~l~~--------------v~~~--- 67 (170)
....+++....-+++...+ +| +||||..+||+|. +-.+.. ++..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccccc
Confidence 3555555555555555444 69 9999999999999 111211 1111
Q ss_pred ----------------CceeEeeechhhhccCCccchHHHHHHHHHhh-chhcc------CCCCeEEEEeCCC
Q 036857 68 ----------------SRSILVIEDAVTSFESNAYNSVALSALLKFVD-GLWSS------SGDGRILVMTTDY 117 (170)
Q Consensus 68 ----------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-g~~~~------~~~~~~vi~tTN~ 117 (170)
....||+|||..+ .-.....||..|. +-... .+-++-||+|||.
T Consensus 219 AFTGA~~~r~G~fE~A~GGTLfLDEI~~m------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 219 AFTGAITRRIGRFEQANGGTLFLDEIGEM------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred CcCCcccccCcceeEcCCceEEeeccccC------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc
Confidence 0789999999765 3344555666554 11111 1225679999984
No 253
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.21 E-value=0.00021 Score=57.21 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=50.9
Q ss_pred cc-CCCcHHHHHHHHHccc----cccccccC-------ceeEeeechhhhccCCccchHHHHHHHHH-hhchh-------
Q 036857 43 WG-PYTGKSSLIAAMADLD----LKEFQSNS-------RSILVIEDAVTSFESNAYNSVALSALLKF-VDGLW------- 102 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~----l~~v~~~~-------p~il~iDEiD~~~~~~~~~~~~~~~ll~~-lDg~~------- 102 (170)
.| .|+|||++.+.|+..- +.....+. .-|+.+||++.+.. .....+..+++. .|...
T Consensus 58 ~G~QG~GKStf~~~L~~~~~~d~~~~~~~kd~~~~l~~~~iveldEl~~~~k---~~~~~lK~~iT~~~~~~R~pY~~~~ 134 (198)
T PF05272_consen 58 VGKQGIGKSTFFRKLGPEYFSDSINDFDDKDFLEQLQGKWIVELDELDGLSK---KDVEALKSFITRRTDTYRPPYGRDP 134 (198)
T ss_pred ecCCcccHHHHHHHHhHHhccCccccCCCcHHHHHHHHhHheeHHHHhhcch---hhHHHHHHHhcccceeeecCCcCcc
Confidence 49 9999999999998111 11111111 67999999998742 122233333322 22222
Q ss_pred ccCCCCeEEEEeCCCCCCC-CCCCCCCCccceEEEcC
Q 036857 103 SSSGDGRILVMTTDYKDHI-DPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 103 ~~~~~~~~vi~tTN~~~~l-D~AllRpgR~d~~i~~~ 138 (170)
...+...++|+|||..+-| |+.=-| || ..|++.
T Consensus 135 ~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~ 168 (198)
T PF05272_consen 135 EEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVS 168 (198)
T ss_pred eeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence 1123346789999988744 555556 65 333443
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.21 E-value=0.00017 Score=65.17 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=70.9
Q ss_pred cccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHHc----------cccccccccC-----
Q 036857 27 TIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMAD----------LDLKEFQSNS----- 68 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA~----------~~l~~v~~~~----- 68 (170)
++-+++++|+.|+-.+ .| ||+-||.|.+.+.. .+-+-|..++
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkD 422 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKD 422 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcC
Confidence 4567778887765444 49 99999999999981 1112111111
Q ss_pred -----------------ceeEeeechhhhccCCccchHHHHHHHHHh------hchhccCCCCeEEEEeCCCCC------
Q 036857 69 -----------------RSILVIEDAVTSFESNAYNSVALSALLKFV------DGLWSSSGDGRILVMTTDYKD------ 119 (170)
Q Consensus 69 -----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l------Dg~~~~~~~~~~vi~tTN~~~------ 119 (170)
..|-+|||+|.+.. ..+....++.++- -|+...-+...-|++|.|+..
T Consensus 423 pvTgEM~LEGGALVLAD~GICCIDEfDKM~e---~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnpr 499 (721)
T KOG0482|consen 423 PVTGEMVLEGGALVLADGGICCIDEFDKMDE---SDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPR 499 (721)
T ss_pred CCCCeeEeccceEEEccCceEeehhhhhhhh---hhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcc
Confidence 67788999999965 2233333333321 233333334567888999544
Q ss_pred -------CCCCCCCCCCccceEEEcC-CCCc
Q 036857 120 -------HIDPVPLRPSCMDMHFHLS-SHTF 142 (170)
Q Consensus 120 -------~lD~AllRpgR~d~~i~~~-~p~~ 142 (170)
.||+||+. |||...-+. .|+.
T Consensus 500 rs~e~NI~LPaALLS--RFDll~Li~D~pdr 528 (721)
T KOG0482|consen 500 RSPEQNINLPAALLS--RFDLLWLIQDRPDR 528 (721)
T ss_pred cChhHhcCCcHHHHH--hhhhhhhhccCCcc
Confidence 78999996 999876654 4766
No 255
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.18 E-value=0.00068 Score=55.58 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| +|+|||++|+.++
T Consensus 25 ~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 25 VGMGGIGKTTLARQVA 40 (287)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCcCCcceeeeecc
Confidence 79 9999999999999
No 256
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.16 E-value=0.0022 Score=50.20 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=33.7
Q ss_pred ceeEeeechhhhc-cCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC-----CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSF-ESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY-----KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~-~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~-----~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..||+|||+|.+. . ..........+.+.++..... ..-.+|+++|+. ...-...+. +|+.. ++++.-+.
T Consensus 119 ~~iiviDe~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~ 193 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIA-SEEDKDFLKSLRSLLDSLLSQ-QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSK 193 (234)
T ss_dssp CEEEEEETGGGGGBC-TTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----H
T ss_pred cEEEEEecHHHHhhc-ccchHHHHHHHHHHHhhcccc-CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCH
Confidence 5999999999998 2 123345566777777774432 223344445441 112223333 57777 88877665
No 257
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.13 E-value=0.00042 Score=63.97 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=42.2
Q ss_pred cc-CCCcHHHHHHHHH----------ccccccccccC----------------------ceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMA----------DLDLKEFQSNS----------------------RSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----------~~~l~~v~~~~----------------------p~il~iDEiD~~~~~~~~~~~ 89 (170)
.| ||||||.+.|.++ +.+-+.+..++ ..|-+|||+|++-.+. +.
T Consensus 488 ~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD---Rt 564 (854)
T KOG0477|consen 488 LGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD---RT 564 (854)
T ss_pred ecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc---cc
Confidence 49 9999999999999 22222222211 7788999999996522 22
Q ss_pred HHHHHHHH------hhchhccCCCCeEEEEeCCC
Q 036857 90 ALSALLKF------VDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 90 ~~~~ll~~------lDg~~~~~~~~~~vi~tTN~ 117 (170)
+..+-.++ =.|+..+.+....||+|+|+
T Consensus 565 SIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 565 SIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred hHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 22222211 01222222345678999996
No 258
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0016 Score=51.00 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++++.+|
T Consensus 12 G~PGvGKtTl~~ki~ 26 (179)
T COG1618 12 GRPGVGKTTLVLKIA 26 (179)
T ss_pred CCCCccHHHHHHHHH
Confidence 9 9999999999999
No 259
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.07 E-value=0.00088 Score=59.07 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=66.8
Q ss_pred CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH----c--------cccc---------ccccc
Q 036857 22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA----D--------LDLK---------EFQSN 67 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA----~--------~~l~---------~v~~~ 67 (170)
...++++++....-+++++.+ +| +||||+.+|++|. . +|.. .++..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~ 153 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGH 153 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhcc
Confidence 345777777766555555444 69 9999999999998 1 1111 11110
Q ss_pred -------C------------ceeEeeechhhhccCCccchHHHHHHHHHhhch-----h--ccCCCCeEEEEeCC--CCC
Q 036857 68 -------S------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-----W--SSSGDGRILVMTTD--YKD 119 (170)
Q Consensus 68 -------~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-----~--~~~~~~~~vi~tTN--~~~ 119 (170)
+ ...||+|||-.+-. .....++..||.- - .....+|-+|+||| ..+
T Consensus 154 ~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~ 227 (403)
T COG1221 154 EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEE 227 (403)
T ss_pred ccceeecccCCcCchheecCCCEEehhhhhhCCH------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHH
Confidence 0 78999999976643 3345566777641 1 11234677888877 222
Q ss_pred CCCC--CCCCCCccceEEEcCCCCc
Q 036857 120 HIDP--VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 120 ~lD~--AllRpgR~d~~i~~~~p~~ 142 (170)
.+=. -+.| -|+...|++|.--.
T Consensus 228 ~~~~g~dl~~-rl~~~~I~LPpLrE 251 (403)
T COG1221 228 AVLAGADLTR-RLNILTITLPPLRE 251 (403)
T ss_pred HHHhhcchhh-hhcCceecCCChhh
Confidence 2322 3332 15666777765544
No 260
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.05 E-value=0.00036 Score=54.67 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||||||+++.+++
T Consensus 23 ~GpPGTGKT~~l~~~i 38 (236)
T PF13086_consen 23 QGPPGTGKTTTLASII 38 (236)
T ss_dssp E-STTSSHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHH
Confidence 79 9999997666665
No 261
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.01 E-value=0.0023 Score=54.40 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=49.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC--CCCCCCCCCCCCCccceEEEcCC--CCc-c
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD--YKDHIDPVPLRPSCMDMHFHLSS--HTF-R 143 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN--~~~~lD~AllRpgR~d~~i~~~~--p~~-~ 143 (170)
.-+|+|||+..++..... ...++++.+-.+.+..+-.++.++|-. ..=.-|+.+-+ ||+... ++. ++. .
T Consensus 146 vrmLIIDE~H~lLaGs~~---~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~-Lp~W~~d~ef 219 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYR---KQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFE-LPRWELDEEF 219 (302)
T ss_pred CcEEEeechHHHhcccHH---HHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCcc-CCCCCCCcHH
Confidence 889999999998763333 344455555555332223445555433 22244676765 776432 221 111 4
Q ss_pred hHHHHHHHHHhh---cCCCCHHHHHHh
Q 036857 144 HYLFEKIEERLA---KIQATPAEVPGE 167 (170)
Q Consensus 144 ~~l~~~~~~~~~---~~~~s~a~i~~~ 167 (170)
..+...++..++ .+.++..++...
T Consensus 220 ~~LL~s~e~~LPLr~~S~l~~~~la~~ 246 (302)
T PF05621_consen 220 RRLLASFERALPLRKPSNLASPELARR 246 (302)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence 455566666664 223555555443
No 262
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.95 E-value=0.0046 Score=53.97 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +||||+++|+++.
T Consensus 168 ~ge~g~gk~~~a~~ih 183 (441)
T PRK10365 168 HGDSGTGKELVARAIH 183 (441)
T ss_pred EecCCCCHHHHHHHHH
Confidence 69 9999999999997
No 263
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.94 E-value=0.0051 Score=52.19 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=79.6
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH------------------------ccc
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA------------------------DLD 60 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA------------------------~~~ 60 (170)
|++...|.+++.+..+++....+.... || +|+||-+.+.++- .+.
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 456788999999999999998887665 79 9999999998887 133
Q ss_pred cccccccC-------------------------------------ceeEeeechhhhccCCccchHHHHHHHHHhhchhc
Q 036857 61 LKEFQSNS-------------------------------------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS 103 (170)
Q Consensus 61 l~~v~~~~-------------------------------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~ 103 (170)
++.+.++. --+++|-|+|.+.. ....+|-.-|+-..
T Consensus 83 istvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------dAQ~aLRRTMEkYs- 155 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------DAQHALRRTMEKYS- 155 (351)
T ss_pred EEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------HHHHHHHHHHHHHh-
Confidence 33333332 45888899998854 22233333444432
Q ss_pred cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 104 SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 104 ~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.-+|+.+|....+=+++.. |. .-|.++-|+.
T Consensus 156 ---~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~ 188 (351)
T KOG2035|consen 156 ---SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSD 188 (351)
T ss_pred ---cCceEEEEecCcccchhHHhh--he-eEEeCCCCCH
Confidence 467788889999988888864 43 4566666666
No 264
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.88 E-value=0.0019 Score=48.38 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=44.8
Q ss_pred cccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhhccCCccc
Q 036857 27 TIATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTSFESNAYN 87 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~~~~~~~~ 87 (170)
.+.+++-.++.+...+ +| ||||||.+++.|| .+.-. ..++++|-.+.=- .-++..+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~--G~~S~~V~~f~~~-~hFP~~~~v 102 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS--GMKSPFVHQFIAT-HHFPHNSNV 102 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc--ccCCCceeeeccc-ccCCCchHH
Confidence 3455555555555555 59 9999999999999 11111 1122333222211 122333344
Q ss_pred hHHHHHHHHHhhchhccCCCCeEE
Q 036857 88 SVALSALLKFVDGLWSSSGDGRIL 111 (170)
Q Consensus 88 ~~~~~~ll~~lDg~~~~~~~~~~v 111 (170)
..-..+|-+.+-+....|+...+|
T Consensus 103 ~~Yk~~L~~~I~~~v~~C~rslFI 126 (127)
T PF06309_consen 103 DEYKEQLKSWIRGNVSRCPRSLFI 126 (127)
T ss_pred HHHHHHHHHHHHHHHHhCCcCeee
Confidence 455566667777777666665544
No 265
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.88 E-value=0.002 Score=58.16 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=24.4
Q ss_pred CcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 24 TSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
.++.+++....-.++...+ .| .||||..+||+|.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH 267 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIH 267 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHH
Confidence 4556666555544454444 49 9999999999999
No 266
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.003 Score=53.46 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=43.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~ 141 (170)
.-|++||++|.+ +....+.||..|+.- ++++++|..|+.++.|.|.++. |+ ..+.|+.++
T Consensus 96 ~kv~ii~~ad~m------t~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~~ 155 (290)
T PRK05917 96 YKIYIIHEADRM------TLDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPMEE 155 (290)
T ss_pred ceEEEEechhhc------CHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccchh
Confidence 458888888876 345678888888774 5688999999999999888774 43 344555443
No 267
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.82 E-value=0.0013 Score=55.11 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++.++++
T Consensus 117 ~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLA 132 (270)
T ss_pred EcCCCCCHHHHHHHHh
Confidence 69 9999999999999
No 268
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.00066 Score=48.68 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=16.0
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| .+++
T Consensus 5 ~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EESTTSSHHHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHHHHCC
Confidence 49 9999999999999 3444
No 269
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.003 Score=53.51 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=44.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~ 139 (170)
..|++||++|.+ .....+.||..++.- +.++++|.+|+.++.|-|-++. |. .+|.|+.
T Consensus 105 ~kV~II~~ad~m------~~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~ 162 (290)
T PRK07276 105 QQVFIIKDADKM------HVNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK 162 (290)
T ss_pred cEEEEeehhhhc------CHHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC
Confidence 568999999877 345678899888774 4678999999999999888875 54 5666755
No 270
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.80 E-value=0.0012 Score=51.34 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=13.4
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+||||+++.++
T Consensus 6 G~pG~GKTTll~k~i 20 (168)
T PF03266_consen 6 GPPGVGKTTLLKKVI 20 (168)
T ss_dssp S-TTSSHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHH
Confidence 9 9999999999988
No 271
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.001 Score=57.43 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +||||||+-|.||
T Consensus 35 lGPSGcGKSTlLr~IA 50 (338)
T COG3839 35 LGPSGCGKSTLLRMIA 50 (338)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 272
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.004 Score=51.97 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=43.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH 140 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p 140 (170)
.-|++|+++|.+ .....+.||..++.- +.++++|.+|+.++.|.|-++. |.- .+.++.+
T Consensus 89 ~KV~II~~ae~m------~~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKL------NKQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhh------CHHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 357777777765 345678888888764 5689999999999999999985 643 3555554
No 273
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0026 Score=50.13 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=22.5
Q ss_pred c-CCCcHHHHHHHHHcccccccccc-----CceeEeeech
Q 036857 44 G-PYTGKSSLIAAMADLDLKEFQSN-----SRSILVIEDA 77 (170)
Q Consensus 44 G-PGtGKT~la~aiA~~~l~~v~~~-----~p~il~iDEi 77 (170)
| ||||||++++.++.+++..+..+ .+|+.=.||.
T Consensus 7 GTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~ 46 (180)
T COG1936 7 GTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDEL 46 (180)
T ss_pred CCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCc
Confidence 9 99999999999994444333222 2555555543
No 274
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.69 E-value=0.0053 Score=48.40 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 18 ~G~~GsGKT~l~~~~~ 33 (209)
T TIGR02237 18 YGPPGSGKTNICMILA 33 (209)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999988
No 275
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.68 E-value=0.0037 Score=57.60 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=70.0
Q ss_pred cccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---------------ccccccc-ccc
Q 036857 27 TIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---------------DLDLKEF-QSN 67 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---------------~~~l~~v-~~~ 67 (170)
++.+++.+|+.++-.+ .| |.|-||.|.|.+- +++|... ..+
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 4567777887765444 39 9999999999876 2333221 111
Q ss_pred C----------------ceeEeeechhhhccCCccchHHHHHHHHHh------hchhccCCCCeEEEEeCCCCC------
Q 036857 68 S----------------RSILVIEDAVTSFESNAYNSVALSALLKFV------DGLWSSSGDGRILVMTTDYKD------ 119 (170)
Q Consensus 68 ~----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l------Dg~~~~~~~~~~vi~tTN~~~------ 119 (170)
. ..|++|||+|.+.. ..+....++.++- -|+-.+.+..+-|++|.|+..
T Consensus 382 ~eTGERRLEAGAMVLADRGVVCIDEFDKMsD---iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~ 458 (818)
T KOG0479|consen 382 QETGERRLEAGAMVLADRGVVCIDEFDKMSD---IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQS 458 (818)
T ss_pred cccchhhhhcCceEEccCceEEehhcccccc---hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCC
Confidence 1 88999999999854 2334445555431 233333345678999999665
Q ss_pred -------CCCCCCCCCCccceEEEc
Q 036857 120 -------HIDPVPLRPSCMDMHFHL 137 (170)
Q Consensus 120 -------~lD~AllRpgR~d~~i~~ 137 (170)
.|+..|+. |||..+-+
T Consensus 459 k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 459 KTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred CChhhccCCcHHHHh--hhcEEEEE
Confidence 57788885 99987765
No 276
>PRK13695 putative NTPase; Provisional
Probab=96.63 E-value=0.0052 Score=47.33 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=13.1
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++++.++
T Consensus 7 G~~G~GKTTll~~i~ 21 (174)
T PRK13695 7 GPPGVGKTTLVLKIA 21 (174)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999976
No 277
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.0028 Score=54.99 Aligned_cols=70 Identities=24% Similarity=0.483 Sum_probs=43.2
Q ss_pred cc-CCCcHHHHHHHHH-ccc-------------------cccccccC-------------ceeEeeechhhhccCCccch
Q 036857 43 WG-PYTGKSSLIAAMA-DLD-------------------LKEFQSNS-------------RSILVIEDAVTSFESNAYNS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~-------------------l~~v~~~~-------------p~il~iDEiD~~~~~~~~~~ 88 (170)
|| =|+|||+|.-..- .+. +....... -.||+|||+..- .-...
T Consensus 71 ~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt---DI~DA 147 (367)
T COG1485 71 WGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT---DIADA 147 (367)
T ss_pred ECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec---ChHHH
Confidence 89 9999999987776 111 11111111 779999999521 11223
Q ss_pred HHHHHHHHHhhchhccCCCCeEEEEeCC-CCCCC
Q 036857 89 VALSALLKFVDGLWSSSGDGRILVMTTD-YKDHI 121 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~l 121 (170)
..++.|+++| . ..+|++++|+| .|+.|
T Consensus 148 MiL~rL~~~L---f---~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 148 MILGRLLEAL---F---ARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHHHHHHHHH---H---HCCcEEEEeCCCChHHh
Confidence 3455555544 3 25999999999 55554
No 278
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0049 Score=51.02 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +||||||++|++|
T Consensus 39 vGeSGsGKSTL~r~l~ 54 (252)
T COG1124 39 VGESGSGKSTLARLLA 54 (252)
T ss_pred EcCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 279
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.57 E-value=0.0072 Score=48.73 Aligned_cols=15 Identities=40% Similarity=0.317 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||+++..++
T Consensus 31 ~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 31 EGDHGTGKSVLSQQFV 46 (234)
T ss_pred ECCCCCChHHHHHHHH
Confidence 69 9999999999997
No 280
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.57 E-value=0.0027 Score=59.72 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +||||||++|.+.
T Consensus 505 vG~SGsGKSTL~KLL~ 520 (709)
T COG2274 505 VGRSGSGKSTLLKLLL 520 (709)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 281
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.57 E-value=0.0059 Score=50.53 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||++++.++
T Consensus 22 ~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 22 VAPPKAGKTTLLQSIA 37 (249)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 282
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.53 E-value=0.0013 Score=48.32 Aligned_cols=15 Identities=47% Similarity=0.702 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 5 ~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 283
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.52 E-value=0.0054 Score=58.89 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=39.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC-CCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP-VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~-AllRpgR~d~~i~~~~p~~ 142 (170)
..||++||+|.++......-..++++.. ...+-+|+|+|....... ++. |-++-++|..|+.
T Consensus 429 ~~vil~devD~~~~~dRg~v~~l~~l~~---------ks~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~ 491 (871)
T KOG1968|consen 429 HFLILMDEVDGMFGEDRGGVSKLSSLCK---------KSSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSS 491 (871)
T ss_pred eeEEEEeccccccchhhhhHHHHHHHHH---------hccCCeEEEecCCCCccccchh---hhcceeeecCCcH
Confidence 3499999999987722222223333333 134567888887766655 555 4447788888888
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.51 E-value=0.0053 Score=52.69 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred ceeEeeechhhhccCC-----------ccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 69 RSILVIEDAVTSFESN-----------AYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 69 p~il~iDEiD~~~~~~-----------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+.+|++|-+-++.+.. +...+.+++++..|.+... ..++.+|+|.-
T Consensus 134 ~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~--~~~~tvi~tNQ 190 (321)
T TIGR02012 134 VDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS--KSNTTAIFINQ 190 (321)
T ss_pred CcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHH--hCCCEEEEEec
Confidence 8899999998887520 1123455667776777655 35777777643
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.51 E-value=0.01 Score=47.16 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 25 ~G~~GsGKT~l~~~~a 40 (218)
T cd01394 25 YGPPGTGKTNIAIQLA 40 (218)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999998
No 286
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.50 E-value=0.0026 Score=52.94 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=29.0
Q ss_pred CCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA 57 (170)
+.+++++.+.+++.+.+...+ -| +|+|||++.+++.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence 457889999988887665444 39 9999999999886
No 287
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0062 Score=55.65 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=36.2
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc-----------------cc-CCCcHHHHHHHHH
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY-----------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------------~G-PGtGKT~la~aiA 57 (170)
.++....|++.++++++...-.++...+ -| +|||||+.++.++
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLs 131 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLS 131 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHH
Confidence 4778999999999999987766665544 29 9999999999999
No 288
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.48 E-value=0.0089 Score=48.61 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=27.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
|.++++||+-.+.... ........+.+.+..+.. .+..+++|++..
T Consensus 118 ~~~lVIDe~t~~l~~~-~d~~~~~~l~~~l~~l~~---~g~tvi~t~~~~ 163 (230)
T PRK08533 118 KDVIIIDSLSSLISND-ASEVAVNDLMAFFKRISS---LNKVIILTANPK 163 (230)
T ss_pred CCEEEEECccHHhcCC-cchHHHHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 7889999997765321 112233455555555543 255777777744
No 289
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.47 E-value=0.0016 Score=46.64 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 4 ~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELA 19 (129)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 290
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.42 E-value=0.0052 Score=55.93 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=52.7
Q ss_pred c-CCCcHHHHHHHHH-----------------ccccccccccC---------------ceeEeeechhhhccCCccchHH
Q 036857 44 G-PYTGKSSLIAAMA-----------------DLDLKEFQSNS---------------RSILVIEDAVTSFESNAYNSVA 90 (170)
Q Consensus 44 G-PGtGKT~la~aiA-----------------~~~l~~v~~~~---------------p~il~iDEiD~~~~~~~~~~~~ 90 (170)
| |||-||.+.+.+- ++.-+.+.+.. ..|++|||+|.+=. +.+..
T Consensus 371 GDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre---~DRVA 447 (729)
T KOG0481|consen 371 GDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE---DDRVA 447 (729)
T ss_pred cCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc---hhhhH
Confidence 9 9999999998876 11111111111 88999999999844 33333
Q ss_pred HHHHHHH------hhchhccCCCCeEEEEeCCCCC-----------CCC--CCCCCCCccceEEEcCC
Q 036857 91 LSALLKF------VDGLWSSSGDGRILVMTTDYKD-----------HID--PVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 91 ~~~ll~~------lDg~~~~~~~~~~vi~tTN~~~-----------~lD--~AllRpgR~d~~i~~~~ 139 (170)
..+-.++ =.|+..-.+...-|++|.|.+- .|| +-++. |||+.+-+.-
T Consensus 448 IHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD 513 (729)
T KOG0481|consen 448 IHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD 513 (729)
T ss_pred HHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence 3332222 1233222234556888888442 233 45564 9998877653
No 291
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.41 E-value=0.0049 Score=47.21 Aligned_cols=46 Identities=13% Similarity=0.364 Sum_probs=26.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
|.++++||--+-+. ......+.+.+..+.. .+..+|++|...+.+.
T Consensus 101 p~illlDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALT-----PAEVERLFKVIRRLRA---QGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHH
Confidence 99999999854433 2233344444444432 2556677777665443
No 292
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0016 Score=50.54 Aligned_cols=15 Identities=53% Similarity=0.678 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||||||+++..+|
T Consensus 13 tGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 13 TGTPGTGKSTLAERLA 28 (176)
T ss_pred eCCCCCCchhHHHHHH
Confidence 49 9999999999999
No 293
>PHA02774 E1; Provisional
Probab=96.39 E-value=0.0072 Score=55.71 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=43.2
Q ss_pred cc-CCCcHHHHHHHHH-cc---ccccccccC---------ceeEeeechhhhccCCccchHHHHHHHHHhhchhc----c
Q 036857 43 WG-PYTGKSSLIAAMA-DL---DLKEFQSNS---------RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWS----S 104 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~---~l~~v~~~~---------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~----~ 104 (170)
|| ||||||++|-+|+ -+ -+..+..++ ..|+++||+-. ....-.-..+-+.+||-.- .
T Consensus 440 ~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~t~-----~~w~y~d~~Lrn~LdG~~v~lD~K 514 (613)
T PHA02774 440 YGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDATH-----PCWDYIDTYLRNALDGNPVSIDCK 514 (613)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecCcc-----hHHHHHHHHHHHHcCCCcceeeec
Confidence 79 9999999999999 11 111111121 66999999921 1111222235567777620 0
Q ss_pred CC-----CCeEEEEeCCCCCCCCCCC
Q 036857 105 SG-----DGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 105 ~~-----~~~~vi~tTN~~~~lD~Al 125 (170)
+. ...-+|+|||---.-++..
T Consensus 515 hk~~~q~k~pPlIITSN~d~~~~~~~ 540 (613)
T PHA02774 515 HKAPVQIKCPPLLITSNIDVKAEDRY 540 (613)
T ss_pred ccCcccccCCCEEEecCCCcccchhh
Confidence 00 1135889999433334444
No 294
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0017 Score=56.36 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=13.9
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +||||||+-|.||
T Consensus 38 GPSGcGKTTlLR~IA 52 (352)
T COG3842 38 GPSGCGKTTLLRMIA 52 (352)
T ss_pred CCCCCCHHHHHHHHh
Confidence 9 9999999999999
No 295
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.38 E-value=0.013 Score=45.97 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=27.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
|.++++||--+-+. ......+.+.+..... .+..+|++|+..+.+..|
T Consensus 142 p~~lllDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 142 SDLWLLDEVETNLS-----KENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchh
Confidence 88888888754432 2223334444432222 356778888877766554
No 296
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.37 E-value=0.0079 Score=53.17 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=23.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC-CCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD-YKDH 120 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN-~~~~ 120 (170)
-++|+|||+-.- .-.....+++| +..+. ..++++++|+| +|+.
T Consensus 194 a~lLCFDEfQVT---DVADAmiL~rL---f~~Lf---~~GvVlvATSNR~P~d 237 (467)
T KOG2383|consen 194 AILLCFDEFQVT---DVADAMILKRL---FEHLF---KNGVVLVATSNRAPED 237 (467)
T ss_pred ceeeeechhhhh---hHHHHHHHHHH---HHHHH---hCCeEEEEeCCCChHH
Confidence 789999999211 00111122222 22333 36999999999 4443
No 297
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.36 E-value=0.0075 Score=46.67 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=19.1
Q ss_pred c-CCCcHHHHHHHHHccccccccccCceeEeee
Q 036857 44 G-PYTGKSSLIAAMADLDLKEFQSNSRSILVIE 75 (170)
Q Consensus 44 G-PGtGKT~la~aiA~~~l~~v~~~~p~il~iD 75 (170)
| ||+|||++|+++. ..++.....+.+||
T Consensus 9 GlsGsGKtTlA~~L~----~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 9 GLSGSGKTTLARALE----RRLFARGIKVYLLD 37 (156)
T ss_dssp SSTTSSHHHHHHHHH----HHHHHTTS-EEEEE
T ss_pred CCCCCCHHHHHHHHH----HHHHHcCCcEEEec
Confidence 9 9999999999998 23333334455554
No 298
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.0036 Score=54.82 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=31.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All 126 (170)
..+||||..-.. .....+.+.+..+.+.... ...++|+-+|+..+.++..+.
T Consensus 216 ~DlVLIDTaG~~-----~~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 216 KHMVLIDTIGMS-----QRDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCEEEEcCCCCC-----cccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHHH
Confidence 678888887422 2223455566666554321 234677778888888876654
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.012 Score=49.90 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=44.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.-|+++|++|.+ .....+.||..|+.. +..+++|++|+.++.|-|.+.. |. ..++|..++.
T Consensus 91 ~KvvII~~~e~m------~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT------SNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc------CHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 457888887765 334567888888775 5688888888888999888775 33 4578888766
No 300
>PHA00729 NTP-binding motif containing protein
Probab=96.33 E-value=0.0021 Score=52.66 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||++|.++|
T Consensus 23 tG~pGvGKT~LA~aLa 38 (226)
T PHA00729 23 FGKQGSGKTTYALKVA 38 (226)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999999
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0071 Score=50.67 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +||||||++|.+.
T Consensus 45 VGESG~GKSTlgr~i~ 60 (268)
T COG4608 45 VGESGCGKSTLGRLIL 60 (268)
T ss_pred EecCCCCHHHHHHHHH
Confidence 39 9999999999999
No 302
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.29 E-value=0.0069 Score=48.87 Aligned_cols=15 Identities=47% Similarity=0.366 Sum_probs=13.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++|-+.|
T Consensus 25 ~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 25 NGPAGTGKTFLALAAA 40 (205)
T ss_dssp E--TTSSTTHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999999
No 303
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.23 E-value=0.003 Score=57.19 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=31.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.++++||=++-+.. .--.++.+.|..+.. .+..+|..|.+|..+
T Consensus 491 P~lvVLDEPNsNLD~-----~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L 535 (580)
T COG4618 491 PFLVVLDEPNSNLDS-----EGEAALAAAILAAKA---RGGTVVVIAHRPSAL 535 (580)
T ss_pred CcEEEecCCCCCcch-----hHHHHHHHHHHHHHH---cCCEEEEEecCHHHH
Confidence 999999998765542 223456777777775 467777777777643
No 304
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.17 E-value=0.0032 Score=41.60 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+++++++
T Consensus 6 G~~gsGKst~~~~l~ 20 (69)
T cd02019 6 GGSGSGKSTVAKKLA 20 (69)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 305
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.16 E-value=0.012 Score=56.61 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=18.9
Q ss_pred cCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 29 ATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 29 ~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
-++.++++.+...+ .| ||||||++.-++.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI 706 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI 706 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH
Confidence 44555555555444 49 9999999765555
No 306
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.14 E-value=0.013 Score=50.38 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=29.1
Q ss_pred ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
+.+|++|=+-++.+..+ ...+.+++++..|-+... ..++.+|+|..
T Consensus 134 ~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~--k~~~~vI~tNQ 190 (325)
T cd00983 134 VDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN--KSNTTVIFINQ 190 (325)
T ss_pred CCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHH--hCCCEEEEEEc
Confidence 88999999888875110 123455667776766654 35677777643
No 307
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.12 E-value=0.0055 Score=48.77 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=26.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
|.|+++||+-+-+.. .+.+.++.++-.. +. ++++-++.-|..++
T Consensus 152 P~ILLLDE~TsALD~--~nkr~ie~mi~~~--v~---~q~vAv~WiTHd~d 195 (223)
T COG4619 152 PKILLLDEITSALDE--SNKRNIEEMIHRY--VR---EQNVAVLWITHDKD 195 (223)
T ss_pred CceEEecCchhhcCh--hhHHHHHHHHHHH--hh---hhceEEEEEecChH
Confidence 999999999776652 3344444443221 11 35777777776543
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.11 E-value=0.013 Score=51.16 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 88 ~G~pG~GKStLllq~a 103 (372)
T cd01121 88 GGDPGIGKSTLLLQVA 103 (372)
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999999888
No 309
>PRK03839 putative kinase; Provisional
Probab=96.11 E-value=0.0032 Score=48.65 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 6 ~G~pGsGKsT~~~~La 21 (180)
T PRK03839 6 TGTPGVGKTTVSKLLA 21 (180)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 310
>PRK06217 hypothetical protein; Validated
Probab=96.09 E-value=0.0038 Score=48.59 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=16.6
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||+|||++|+++| .+++.
T Consensus 7 ~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 7 TGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred ECCCCCCHHHHHHHHHHHcCCc
Confidence 49 9999999999999 44443
No 311
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.09 E-value=0.0032 Score=58.12 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=32.7
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA 57 (170)
.+-.-|++..+.++.+++++..+ .| ||+|||++|++||
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la 124 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLK 124 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHH
Confidence 34446889999999999998776 39 9999999999999
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.09 E-value=0.014 Score=45.83 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.+.++
T Consensus 31 ~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 31 VGPNGTGKTTAVKILA 46 (177)
T ss_pred ECCCCChHHHHHHHHH
Confidence 39 9999999999999
No 313
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.029 Score=44.40 Aligned_cols=47 Identities=13% Similarity=0.352 Sum_probs=28.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
|.++++||--.-+. ......+.+.+..+.. .+..+|++|...+.++.
T Consensus 146 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 146 RPIWILDEPTAALD-----AAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc
Confidence 77888887743322 2333444455544432 35678888888877765
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.02 E-value=0.019 Score=44.17 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.++++
T Consensus 34 ~G~nGsGKStLl~~l~ 49 (173)
T cd03246 34 IGPSGSGKSTLARLIL 49 (173)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 315
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.02 Score=46.04 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=28.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
|+++++||+-+-... ........++++.+ .........+|++|...+.+....
T Consensus 109 ~slvllDE~~~gtd~-~~~~~~~~ail~~l---~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGTDT-EDGAGLLIATIEHL---LKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCCCH-HHHHHHHHHHHHHH---HhcCCCCcEEEEEcChHHHHHhhh
Confidence 999999998543221 01112222333333 221012457888888777665554
No 316
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.013 Score=48.77 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=13.5
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||||||++.|-+|
T Consensus 144 gpP~~GKTTlLRdia 158 (308)
T COG3854 144 GPPQVGKTTLLRDIA 158 (308)
T ss_pred cCCCCChHHHHHHHH
Confidence 9 9999999999998
No 317
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.015 Score=44.68 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=27.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
|.++++||--.-+. ......+.+.+..+. .+..+|++|+..+.+.
T Consensus 115 p~llllDEP~~gLD-----~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~ 159 (171)
T cd03228 115 PPILILDEATSALD-----PETEALILEALRALA----KGKTVIVIAHRLSTIR 159 (171)
T ss_pred CCEEEEECCCcCCC-----HHHHHHHHHHHHHhc----CCCEEEEEecCHHHHH
Confidence 89999999744332 233344444454442 2467788888777653
No 318
>PRK08233 hypothetical protein; Provisional
Probab=95.98 E-value=0.004 Score=47.58 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=44.6
Q ss_pred c-CCCcHHHHHHHHH-ccccccccccCceeEeeechhhh---------cc-CCccchHHHHHHHHHhhchhccCCCCeEE
Q 036857 44 G-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDAVTS---------FE-SNAYNSVALSALLKFVDGLWSSSGDGRIL 111 (170)
Q Consensus 44 G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEiD~~---------~~-~~~~~~~~~~~ll~~lDg~~~~~~~~~~v 111 (170)
| ||+|||++|+.+| .+.. ..++.+|..+.- .. ........+..+.+.+.......+.+ ++
T Consensus 10 G~~GsGKtTla~~L~~~l~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~v 81 (182)
T PRK08233 10 AVSGGGKTTLTERLTHKLKN-------SKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVD-YI 81 (182)
T ss_pred CCCCCCHHHHHHHHHhhCCC-------CceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCce-EE
Confidence 9 9999999999999 2221 244455544210 01 01111223344555555544321113 34
Q ss_pred EEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 112 VMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 112 i~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|+-.... ...+.+. ..+|..|.+..|..
T Consensus 82 ivd~~~~-~~~~~~~--~~~d~~i~l~~~~~ 109 (182)
T PRK08233 82 IVDYPFA-YLNSEMR--QFIDVTIFIDTPLD 109 (182)
T ss_pred EEeeehh-hccHHHH--HHcCEEEEEcCCHH
Confidence 4333222 2222222 36899999998877
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.98 E-value=0.0099 Score=44.67 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.++++
T Consensus 32 ~G~nGsGKStLl~~l~ 47 (144)
T cd03221 32 VGRNGAGKSTLLKLIA 47 (144)
T ss_pred ECCCCCCHHHHHHHHc
Confidence 39 9999999999999
No 320
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.94 E-value=0.012 Score=54.45 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 21 HPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
+-.+|+++.+.....+.+++.+ -| +|||||++.||||
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia 440 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3345777755555544555555 29 9999999999999
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.92 E-value=0.02 Score=44.31 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=26.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.++++||--.-+. ......+.+.+..+.. ..+..+|++|.+.+.+
T Consensus 116 p~llllDEP~~~LD-----~~~~~~~~~~l~~~~~--~~~~tiii~sh~~~~~ 161 (180)
T cd03214 116 PPILLLDEPTSHLD-----IAHQIELLELLRRLAR--ERGKTVVMVLHDLNLA 161 (180)
T ss_pred CCEEEEeCCccCCC-----HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHH
Confidence 99999999854433 2233344444444432 1245677777766654
No 322
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.92 E-value=0.014 Score=44.99 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||+++++++
T Consensus 34 ~G~nGsGKStLl~~l~ 49 (178)
T cd03247 34 LGRSGSGKSTLLQLLT 49 (178)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 323
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.91 E-value=0.0043 Score=47.15 Aligned_cols=15 Identities=60% Similarity=0.882 Sum_probs=13.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||+++++++
T Consensus 5 ~G~~stGKTTL~~~L~ 20 (163)
T PF13521_consen 5 TGGPSTGKTTLIEALA 20 (163)
T ss_dssp E--TTSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 324
>PRK06762 hypothetical protein; Provisional
Probab=95.90 E-value=0.0046 Score=47.00 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 8 ~G~~GsGKST~A~~L~ 23 (166)
T PRK06762 8 RGNSGSGKTTIAKQLQ 23 (166)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 325
>PRK13947 shikimate kinase; Provisional
Probab=95.90 E-value=0.005 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.5
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||||||++++.+| .++..
T Consensus 7 ~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 7 IGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred EcCCCCCHHHHHHHHHHHhCCC
Confidence 59 9999999999999 44443
No 326
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0085 Score=52.33 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++.|+||
T Consensus 51 lGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 51 LGASGCGKSTLLRMLA 66 (377)
T ss_pred ECCCCCcHHHHHHHHh
Confidence 49 9999999999999
No 327
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.88 E-value=0.023 Score=46.60 Aligned_cols=39 Identities=10% Similarity=0.407 Sum_probs=27.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
|.|++|||-=+-+. ...+.++|..|-.+.. ++.-.+..|
T Consensus 155 P~vmLFDEPTSALD-----PElv~EVL~vm~~LA~---eGmTMivVT 193 (240)
T COG1126 155 PKVMLFDEPTSALD-----PELVGEVLDVMKDLAE---EGMTMIIVT 193 (240)
T ss_pred CCEEeecCCcccCC-----HHHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 99999999855433 4567888888888875 344444444
No 328
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.88 E-value=0.0047 Score=46.63 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||++|+++|
T Consensus 10 ~G~~GsGKstla~~La 25 (175)
T PRK00131 10 IGFMGAGKSTIGRLLA 25 (175)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=95.87 E-value=0.0053 Score=41.71 Aligned_cols=15 Identities=53% Similarity=0.727 Sum_probs=10.8
Q ss_pred cc-CCCcHHH-HHHHHH
Q 036857 43 WG-PYTGKSS-LIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~-la~aiA 57 (170)
.| ||||||+ +++.++
T Consensus 16 ~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIA 32 (76)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49 9999995 444444
No 330
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.86 E-value=0.031 Score=43.96 Aligned_cols=48 Identities=6% Similarity=0.297 Sum_probs=27.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
|.++++||--.-+. ......+.+.+..... .+..+|++|...+.++.+
T Consensus 146 p~~lilDEP~~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 146 AKLWLLDEPLVALD-----ELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred CCEEEEeCCCcccC-----HHHHHHHHHHHHHHHH---cCCEEEEEeCCchhcccc
Confidence 88888888744332 2333344444444432 355678888877776653
No 331
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0046 Score=48.46 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=16.9
Q ss_pred c-CCCcHHHHHHHHH-ccccccc
Q 036857 44 G-PYTGKSSLIAAMA-DLDLKEF 64 (170)
Q Consensus 44 G-PGtGKT~la~aiA-~~~l~~v 64 (170)
| ||||||++|+-+| .+++..+
T Consensus 7 G~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 7 GLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred cCCCCChhHHHHHHHHHhCCcee
Confidence 8 9999999999999 4444443
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.85 E-value=0.021 Score=51.04 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 86 ~G~pG~GKTtL~lq~a 101 (446)
T PRK11823 86 GGDPGIGKSTLLLQVA 101 (446)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 333
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.84 E-value=0.016 Score=45.99 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=26.4
Q ss_pred ceeEeeechhhhccCC---c----cchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 69 RSILVIEDAVTSFESN---A----YNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 69 p~il~iDEiD~~~~~~---~----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+.+|+||-+-.+.... . .....+.+++..|..+.. ..++.+|+|+
T Consensus 115 ~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~--~~~~~vi~tn 166 (226)
T cd01393 115 VDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLAD--KFNVAVVFTN 166 (226)
T ss_pred eeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHH--HhCcEEEEEE
Confidence 5688888887775411 1 112445666666776654 3456666554
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.014 Score=44.03 Aligned_cols=47 Identities=15% Similarity=0.395 Sum_probs=28.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
|.++++||...-+. ......+.+.+..... .+..++++|...+.+..
T Consensus 99 ~~i~ilDEp~~~lD-----~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLD-----PASRERLLELLRELAE---EGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCC-----HHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHH
Confidence 99999999965443 2333444444444433 24567777777665544
No 335
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.83 E-value=0.018 Score=59.08 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=54.4
Q ss_pred c-CCCcHHHHHHHHH--------ccccc------cccccC----------------------ceeEeeechhhhccCCcc
Q 036857 44 G-PYTGKSSLIAAMA--------DLDLK------EFQSNS----------------------RSILVIEDAVTSFESNAY 86 (170)
Q Consensus 44 G-PGtGKT~la~aiA--------~~~l~------~v~~~~----------------------p~il~iDEiD~~~~~~~~ 86 (170)
| ||+|||+++.|+| +++++ .++... ..-+++||+.- .
T Consensus 1550 GsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL------a 1623 (4600)
T COG5271 1550 GSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL------A 1623 (4600)
T ss_pred CCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh------h
Confidence 9 9999999999999 33332 222221 56788899963 2
Q ss_pred chHHHHHHHHHhhc-----------hhccCCCCeEEEEeCCCCC------CCCCCCCCCCccceEE
Q 036857 87 NSVALSALLKFVDG-----------LWSSSGDGRILVMTTDYKD------HIDPVPLRPSCMDMHF 135 (170)
Q Consensus 87 ~~~~~~~ll~~lDg-----------~~~~~~~~~~vi~tTN~~~------~lD~AllRpgR~d~~i 135 (170)
++.++..|-.++|- ... +-.+..|++|.|+.+ .||..++- ||-+..
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFsvV~ 1686 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFSVVK 1686 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--hhheEE
Confidence 45566666666553 222 234677888888655 78999884 876543
No 336
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.81 E-value=0.022 Score=50.48 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.|+
T Consensus 175 vgppGvGKTTLaK~Ia 190 (416)
T PRK09376 175 VAPPKAGKTVLLQNIA 190 (416)
T ss_pred eCCCCCChhHHHHHHH
Confidence 59 9999999999999
No 337
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.027 Score=43.29 Aligned_cols=45 Identities=7% Similarity=0.364 Sum_probs=26.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.|+++||--+-+. ......+++.+..+.. .+..+|++|..++.+
T Consensus 114 p~illlDEPt~~LD-----~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~ 158 (173)
T cd03230 114 PELLILDEPTSGLD-----PESRREFWELLRELKK---EGKTILLSSHILEEA 158 (173)
T ss_pred CCEEEEeCCccCCC-----HHHHHHHHHHHHHHHH---CCCEEEEECCCHHHH
Confidence 89999999855433 2333445555555543 245667777765544
No 338
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.80 E-value=0.02 Score=49.46 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=37.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc-----eEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD-----MHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d-----~~i~~~~p~~ 142 (170)
|.|+++||.=+-+.+- --.....+||..-+.+ .+.+|+.| ++||+|+.=-.|+- ..+..+.|.+
T Consensus 183 ~~IlLMDEaFSALDPL-IR~~mQdeLl~Lq~~l-----~KTIvFit----HDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 183 PDILLMDEAFSALDPL-IRTEMQDELLELQAKL-----KKTIVFIT----HDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred CCEEEecCchhhcChH-HHHHHHHHHHHHHHHh-----CCeEEEEe----cCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 9999999983333210 1123344455544444 35566665 78899884333432 4678888877
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.80 E-value=0.033 Score=44.10 Aligned_cols=15 Identities=47% Similarity=0.534 Sum_probs=13.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||+++++++
T Consensus 7 ~GptGSGKTTll~~ll 22 (198)
T cd01131 7 TGPTGSGKSTTLAAMI 22 (198)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999988
No 340
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.77 E-value=0.013 Score=53.53 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=31.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
|.|+++||.-+-+. ..+-..+.+.+.... .+..+|+.|.+++. ++ ..|..+.+.
T Consensus 490 ~~iliLDEpts~LD-----~~t~~~i~~~l~~~~----~~~tvIiitHr~~~-----~~--~~D~ii~l~ 543 (588)
T PRK13657 490 PPILILDEATSALD-----VETEAKVKAALDELM----KGRTTFIIAHRLST-----VR--NADRILVFD 543 (588)
T ss_pred CCEEEEeCCccCCC-----HHHHHHHHHHHHHHh----cCCEEEEEEecHHH-----HH--hCCEEEEEE
Confidence 99999999976544 223334445454442 24566666666642 33 567766664
No 341
>PRK14532 adenylate kinase; Provisional
Probab=95.76 E-value=0.0062 Score=47.25 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=16.3
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||+|||++|+.+| ..++.
T Consensus 6 ~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 6 FGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred ECCCCCCHHHHHHHHHHHcCCe
Confidence 59 9999999999999 33433
No 342
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.76 E-value=0.017 Score=51.90 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+++.++
T Consensus 367 vG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLT 382 (529)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 343
>PRK09354 recA recombinase A; Provisional
Probab=95.76 E-value=0.022 Score=49.52 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||||||+++..++
T Consensus 66 ~G~~GsGKTtLal~~~ 81 (349)
T PRK09354 66 YGPESSGKTTLALHAI 81 (349)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 79 9999999998877
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.76 E-value=0.0056 Score=47.01 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 9 ~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 9 VGGPGSGKGTQCEKIV 24 (188)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 345
>PF14516 AAA_35: AAA-like domain
Probab=95.75 E-value=0.18 Score=43.19 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=13.7
Q ss_pred ceeEeeechhhhccC
Q 036857 69 RSILVIEDAVTSFES 83 (170)
Q Consensus 69 p~il~iDEiD~~~~~ 83 (170)
|-||+|||+|.++..
T Consensus 128 ~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 128 PLVLFIDEIDRLFEY 142 (331)
T ss_pred CEEEEEechhhhccC
Confidence 899999999999873
No 346
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.74 E-value=0.0059 Score=45.55 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 5 ~G~~GsGKST~a~~l~ 20 (150)
T cd02021 5 MGVSGSGKSTVGKALA 20 (150)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 347
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.73 E-value=0.0059 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=16.9
Q ss_pred cc-CCCcHHHHHHHHH-cccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKE 63 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~ 63 (170)
.| ||+|||++|+.+| ..++..
T Consensus 5 ~G~pGsGKst~a~~la~~~~~~~ 27 (183)
T TIGR01359 5 LGGPGSGKGTQCAKIVENFGFTH 27 (183)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeE
Confidence 59 9999999999999 444433
No 348
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.71 E-value=0.0094 Score=53.60 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=30.8
Q ss_pred CcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857 24 TSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA 57 (170)
++++-.+++.++++|.+.. -| ||.|||++|+|+|
T Consensus 245 ~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlA 284 (604)
T COG1855 245 SLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALA 284 (604)
T ss_pred chhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHH
Confidence 5888899999999998755 49 9999999999999
No 349
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.71 E-value=0.014 Score=54.48 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=31.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
|.|+++||.-+-+. ..+-..+.+.+.... .+..+|+.|++++.+ + .+|..+.+.
T Consensus 612 ~~ililDEpts~LD-----~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~-----~--~~d~ii~l~ 665 (694)
T TIGR01846 612 PRILIFDEATSALD-----YESEALIMRNMREIC----RGRTVIIIAHRLSTV-----R--ACDRIIVLE 665 (694)
T ss_pred CCEEEEECCCcCCC-----HHHHHHHHHHHHHHh----CCCEEEEEeCChHHH-----H--hCCEEEEEe
Confidence 99999999854333 233344445554442 256677777776544 2 355555553
No 350
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.028 Score=46.19 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++.|++-
T Consensus 39 IGPSGcGKST~LR~lN 54 (253)
T COG1117 39 IGPSGCGKSTLLRCLN 54 (253)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 49 9999999999998
No 351
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.0094 Score=48.71 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=23.8
Q ss_pred c-CCCcHHHHHHHHH------ccccccccccCceeEeeechhhhcc
Q 036857 44 G-PYTGKSSLIAAMA------DLDLKEFQSNSRSILVIEDAVTSFE 82 (170)
Q Consensus 44 G-PGtGKT~la~aiA------~~~l~~v~~~~p~il~iDEiD~~~~ 82 (170)
| ||+|||++|+-+| ......+..++...+.=||.+-+..
T Consensus 8 GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~k 53 (261)
T COG4088 8 GYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILK 53 (261)
T ss_pred cCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHH
Confidence 9 9999999999999 1222222222334444566654443
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.66 E-value=0.029 Score=45.03 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=27.3
Q ss_pred ceeEeeechhhhccCC--ccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 69 RSILVIEDAVTSFESN--AYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 69 p~il~iDEiD~~~~~~--~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+.+|+||=+..+.... ......+..+...|-.+.. ..++.+++++
T Consensus 124 ~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~--~~~~~ii~~~ 170 (242)
T cd00984 124 LGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAK--ELNVPVIALS 170 (242)
T ss_pred CCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHH--HhCCeEEEec
Confidence 7899999888765432 2233445666666666654 2456666655
No 353
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.65 E-value=0.036 Score=43.61 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=29.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All 126 (170)
|.++++||--+-+. ......+.+.+..... .+..+|++|.++..+..+.-
T Consensus 144 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 144 RPLWILDEPTTALD-----KAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccc
Confidence 88888888754433 2333444444544432 35567778887777666544
No 354
>PRK00625 shikimate kinase; Provisional
Probab=95.65 E-value=0.0066 Score=47.48 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.+|
T Consensus 6 iG~pGsGKTT~~k~La 21 (173)
T PRK00625 6 CGLPTVGKTSFGKALA 21 (173)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 355
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.65 E-value=0.015 Score=52.03 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=33.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSC 130 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR 130 (170)
|.++++||+++.+..- +.-.+...+-.+.- ..+.-+++.|++++-++. +||++
T Consensus 526 pn~~~iDEF~AhLD~~-----TA~rVArkiselaR--e~giTlivvThrpEv~~A--L~PD~ 578 (593)
T COG2401 526 PNVLLIDEFAAHLDEL-----TAVRVARKISELAR--EAGITLIVVTHRPEVGNA--LRPDT 578 (593)
T ss_pred CCcEEhhhhhhhcCHH-----HHHHHHHHHHHHHH--HhCCeEEEEecCHHHHhc--cCCce
Confidence 8999999999987622 12222233333321 246678888899887775 55544
No 356
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.64 E-value=0.0069 Score=44.49 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=16.3
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||+|||++|+.+| .+++.
T Consensus 5 ~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 5 DGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred ECCCCCCHHHHHHHHHHHhCCc
Confidence 49 9999999999999 34443
No 357
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.63 E-value=0.013 Score=53.32 Aligned_cols=55 Identities=9% Similarity=0.213 Sum_probs=32.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~ 139 (170)
|.|+++||.=+-+. ..+-..+.+.+.... .+..+|+.|.+++.+ + .+|..+.+..
T Consensus 504 ~~IliLDE~TSaLD-----~~te~~i~~~l~~~~----~~~TvIiItHrl~~i-----~--~aD~Iivl~~ 558 (588)
T PRK11174 504 CQLLLLDEPTASLD-----AHSEQLVMQALNAAS----RRQTTLMVTHQLEDL-----A--QWDQIWVMQD 558 (588)
T ss_pred CCEEEEeCCccCCC-----HHHHHHHHHHHHHHh----CCCEEEEEecChHHH-----H--hCCEEEEEeC
Confidence 99999999965443 223334445555542 245566667766443 2 5677776643
No 358
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.62 E-value=0.027 Score=47.16 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=13.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.|+
T Consensus 7 ~G~P~SGKTt~a~~L~ 22 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELK 22 (270)
T ss_dssp E--TTSSHHHHHHHHH
T ss_pred EcCCCCcHHHHHHHHH
Confidence 59 9999999999998
No 359
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.62 E-value=0.018 Score=52.27 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~ 139 (170)
|.|+++||.-+-+.. .+-..+.+.+-... .+..+|+.|.+++ .++ .+|..+.+..
T Consensus 499 ~~ililDEptsaLD~-----~t~~~i~~~l~~~~----~~~tvI~VtHr~~-----~~~--~~D~Ii~l~~ 553 (582)
T PRK11176 499 SPILILDEATSALDT-----ESERAIQAALDELQ----KNRTSLVIAHRLS-----TIE--KADEILVVED 553 (582)
T ss_pred CCEEEEECccccCCH-----HHHHHHHHHHHHHh----CCCEEEEEecchH-----HHH--hCCEEEEEEC
Confidence 999999998665542 22223333333332 2455666666653 343 6777777754
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.62 E-value=0.007 Score=45.84 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 4 ~G~~GsGKSTla~~l~ 19 (163)
T TIGR01313 4 MGVAGSGKSTIASALA 19 (163)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 361
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.59 E-value=0.0071 Score=46.50 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||||||+++++++
T Consensus 2 G~sGsGKSTla~~la 16 (163)
T PRK11545 2 GVSGSGKSAVASEVA 16 (163)
T ss_pred CCCCCcHHHHHHHHH
Confidence 9 9999999999999
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.56 E-value=0.035 Score=44.37 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.6
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||+++..++
T Consensus 25 ~G~~GsGKT~l~~q~l 40 (226)
T PF06745_consen 25 SGPPGSGKTTLALQFL 40 (226)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EeCCCCCcHHHHHHHH
Confidence 59 9999999998877
No 363
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.55 E-value=0.019 Score=52.43 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| .|+|||++++.++
T Consensus 373 vG~SGsGKSTLl~lL~ 388 (592)
T PRK10790 373 VGHTGSGKSTLASLLM 388 (592)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 364
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.52 E-value=0.029 Score=48.55 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.|+||
T Consensus 36 lG~sGsGKSTLLr~ia 51 (356)
T PRK11650 36 VGPSGCGKSTLLRMVA 51 (356)
T ss_pred ECCCCCcHHHHHHHHH
Confidence 49 9999999999999
No 365
>PF13479 AAA_24: AAA domain
Probab=95.52 E-value=0.0082 Score=48.07 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=14.1
Q ss_pred ccc-CCCcHHHHHHHHH
Q 036857 42 YWG-PYTGKSSLIAAMA 57 (170)
Q Consensus 42 ~~G-PGtGKT~la~aiA 57 (170)
+|| ||+|||++|+.+-
T Consensus 8 IyG~~G~GKTt~a~~~~ 24 (213)
T PF13479_consen 8 IYGPPGSGKTTLAASLP 24 (213)
T ss_pred EECCCCCCHHHHHHhCC
Confidence 389 9999999999884
No 366
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.51 E-value=0.008 Score=44.64 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.0
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| .+++
T Consensus 5 ~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 5 IGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EcCCCCCHHHHHHHHHHHhCC
Confidence 49 9999999999999 4443
No 367
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.04 Score=43.44 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=27.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
|.++++||--.-+. ......+.+.+..... .+..+|++|.+.+.++.
T Consensus 148 p~llllDEPt~~LD-----~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 148 APLWILDEPFTAID-----KQGVARLEALLAQHAE---QGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCEEEEeCCCccCC-----HHHHHHHHHHHHHHHH---CCCEEEEEecChhhhcc
Confidence 88888888754332 2223334444443332 24567888888887766
No 368
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.47 E-value=0.0083 Score=46.26 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++|+.++
T Consensus 8 ~G~~gsGKst~a~~l~ 23 (175)
T cd00227 8 NGGSSAGKSSIARALQ 23 (175)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 369
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.46 E-value=0.03 Score=49.16 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||++++.+|
T Consensus 139 vG~pGtGKTTLl~~la 154 (380)
T PRK12608 139 VAPPRAGKTVLLQQIA 154 (380)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999987
No 370
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.45 E-value=0.032 Score=49.08 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=66.8
Q ss_pred cccCCCCCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-----------cccc--------
Q 036857 14 WNSNKFEHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-----------DLDL-------- 61 (170)
Q Consensus 14 w~~~~~~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-----------~~~l-------- 61 (170)
...+.+.+...|+.++.....-+.++... .| -||||-++||+-. .++.
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 35567778889999987766655555444 49 9999999999876 1111
Q ss_pred -ccccccC--------------ceeEeeechhhhccCCccchHHHHHHHHHh-hchhccCCC------CeEEEEeCC--C
Q 036857 62 -KEFQSNS--------------RSILVIEDAVTSFESNAYNSVALSALLKFV-DGLWSSSGD------GRILVMTTD--Y 117 (170)
Q Consensus 62 -~~v~~~~--------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~l-Dg~~~~~~~------~~~vi~tTN--~ 117 (170)
++++..+ ..-+|+|||-.+ +.+....+|.++ ||..-.-++ +|-||+||. .
T Consensus 272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEm------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL 345 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL 345 (511)
T ss_pred HHHHhcCCCCCCCccchhhhccCCeEEeehhhhc------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence 1222211 667889999543 445666677766 555433333 467888885 3
Q ss_pred CCCCCCCCC
Q 036857 118 KDHIDPVPL 126 (170)
Q Consensus 118 ~~~lD~All 126 (170)
.+.++..-.
T Consensus 346 ~~lv~~g~f 354 (511)
T COG3283 346 VELVQKGKF 354 (511)
T ss_pred HHHHhcCch
Confidence 344454444
No 371
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.44 E-value=0.031 Score=54.54 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=23.0
Q ss_pred ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
..+.+++++.+...+ -| ||||||++.+++.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~ 383 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR 383 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH
Confidence 347888888765444 49 9999999988775
No 372
>PRK04040 adenylate kinase; Provisional
Probab=95.41 E-value=0.0085 Score=47.35 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||++++.++
T Consensus 8 ~G~pG~GKtt~~~~l~ 23 (188)
T PRK04040 8 TGVPGVGKTTVLNKAL 23 (188)
T ss_pred EeCCCCCHHHHHHHHH
Confidence 69 9999999999998
No 373
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.41 E-value=0.023 Score=51.14 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.++
T Consensus 354 vG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 354 VGPSGAGKSTLLNLLL 369 (529)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 374
>PRK06851 hypothetical protein; Provisional
Probab=95.39 E-value=0.03 Score=48.94 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=30.5
Q ss_pred HhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCC
Q 036857 97 FVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSS 139 (170)
Q Consensus 97 ~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~ 139 (170)
.+||+.- ++-.+.|+..+.|+.+|| .+||=+|..|.++.
T Consensus 72 slDgvii--p~l~~aivDgtaph~~~P--~~pgav~eiinL~~ 110 (367)
T PRK06851 72 SLDGVII--PELKIAILDGTAPHVVDP--KAPGAVEEIINLGD 110 (367)
T ss_pred ceeeEEe--cCCCEEEEcCCCcCcCCC--CCCCcceEEEEHHH
Confidence 4788875 455677777779999999 56888898998876
No 375
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.38 E-value=0.016 Score=43.96 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++.+++.
T Consensus 30 ~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 30 TGESGSGKTSLLRALL 45 (185)
T ss_dssp -B-TTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999987
No 376
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.38 E-value=0.019 Score=53.41 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+++.++
T Consensus 485 vG~sGsGKSTLlklL~ 500 (686)
T TIGR03797 485 VGPSGSGKSTLLRLLL 500 (686)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.37 E-value=0.0095 Score=45.08 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 5 ~G~~GsGKSTla~~L~ 20 (149)
T cd02027 5 TGLSGSGKSTIARALE 20 (149)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 378
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.37 E-value=0.009 Score=48.71 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++|++++
T Consensus 5 ~G~pGSGKST~a~~La 20 (249)
T TIGR03574 5 TGLPGVGKSTFSKELA 20 (249)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 379
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.35 E-value=0.033 Score=48.63 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++.++||
T Consensus 46 lGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 46 LGPSGCGKTTVLRLIA 61 (375)
T ss_pred ECCCCCcHHHHHHHHh
Confidence 49 9999999999999
No 380
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.35 E-value=0.064 Score=47.93 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=32.8
Q ss_pred cc-CCCcHHHHHHHHH-c----cc----ccccccc----------CceeEeeechhhhccCCccchHHHHHHHHHhh
Q 036857 43 WG-PYTGKSSLIAAMA-D----LD----LKEFQSN----------SRSILVIEDAVTSFESNAYNSVALSALLKFVD 99 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~----~~----l~~v~~~----------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD 99 (170)
.| ||||||.++.+++ . .+ ...+..+ ...+|+|||+--+-- ......+..+...|.
T Consensus 215 lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~--~~~~~~v~imK~yMe 289 (449)
T TIGR02688 215 LGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKF--AKPKELIGILKNYME 289 (449)
T ss_pred ECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcC--CchHHHHHHHHHHHH
Confidence 49 9999999999987 1 11 1111111 188999999976432 122334455555554
No 381
>PHA00012 I assembly protein
Probab=95.33 E-value=0.021 Score=49.42 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=39.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~All 126 (170)
.+|+++||+-..++.+...+.....+++.+--. ...+.-+|++|-++..+|..+.
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~h---Rh~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDKERQPVIDWFLHA---RKLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred CcEEEEECcccccCCCCcCcCCcHHHHHHHHHh---ccCCceEEEEcCCHHHHhHHHH
Confidence 679999999999986665543333344433332 2457888999999999999874
No 382
>PRK13949 shikimate kinase; Provisional
Probab=95.30 E-value=0.012 Score=45.66 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=16.5
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||+|||++++.+| .+++.
T Consensus 7 iG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 7 VGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred ECCCCCCHHHHHHHHHHHcCCC
Confidence 49 9999999999999 44443
No 383
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.25 E-value=0.036 Score=52.56 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
..+.+++++.+...+ -| ||||||++++++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH
Confidence 457788887765433 49 9999999999987
No 384
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.24 E-value=0.019 Score=53.44 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=31.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
|.|+++||.-+-+. ..+-..+.+.+.... .+..+|+.|.+++. ++ ..|..+.+.
T Consensus 620 p~iliLDE~Ts~LD-----~~te~~i~~~l~~~~----~~~T~iiItHrl~~-----~~--~~D~iivl~ 673 (694)
T TIGR03375 620 PPILLLDEPTSAMD-----NRSEERFKDRLKRWL----AGKTLVLVTHRTSL-----LD--LVDRIIVMD 673 (694)
T ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHh----CCCEEEEEecCHHH-----HH--hCCEEEEEe
Confidence 99999999854433 223334444444442 24556666676653 33 567666664
No 385
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.22 E-value=0.011 Score=44.40 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.9
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.|| ..++
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTS
T ss_pred cCCCCCChHHHHHHHHHhcCc
Confidence 49 9999999999999 3343
No 386
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.19 E-value=0.011 Score=45.57 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.||
T Consensus 5 ~G~pGsGKst~a~~La 20 (194)
T cd01428 5 LGPPGSGKGTQAERLA 20 (194)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 387
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.042 Score=47.56 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++.|.||
T Consensus 38 lGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 38 LGPSGCGKTTVLRLVA 53 (351)
T ss_pred ECCCCCcHHHHHHHHH
Confidence 39 9999999999999
No 388
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.16 E-value=0.012 Score=45.18 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+++|
T Consensus 11 G~~GsGKST~a~~la 25 (175)
T PRK00889 11 GLSGAGKTTIARALA 25 (175)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 389
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.15 E-value=0.043 Score=47.48 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+.||
T Consensus 36 ~GpsGsGKSTLLr~ia 51 (353)
T TIGR03265 36 LGPSGCGKTTLLRIIA 51 (353)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 390
>PRK14530 adenylate kinase; Provisional
Probab=95.14 E-value=0.012 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.0
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| ..++
T Consensus 9 ~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 9 LGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 49 9999999999999 3443
No 391
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.14 E-value=0.012 Score=45.20 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|++++
T Consensus 13 ~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 13 TGLAGSGKTTIAKALY 28 (176)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 392
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.11 E-value=0.05 Score=53.60 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=23.9
Q ss_pred ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
..+.+++++.+.... .| ||||||++.+++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~ 418 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR 418 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH
Confidence 457888888766433 49 9999999999987
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.10 E-value=0.31 Score=46.26 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
.+.+|..-..++--+.+.+.+.... .| +|.|||+++...+
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~ 53 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWA 53 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHH
Confidence 3556776777787788777775432 59 9999999999876
No 394
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.09 E-value=0.06 Score=41.91 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|..+|
T Consensus 5 ~G~~~sGKS~~a~~~~ 20 (169)
T cd00544 5 TGGARSGKSRFAERLA 20 (169)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 395
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.09 E-value=0.012 Score=48.87 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 8 ~G~pGSGKSTla~~L~ 23 (300)
T PHA02530 8 VGVPGSGKSTWAREFA 23 (300)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 396
>PRK02496 adk adenylate kinase; Provisional
Probab=95.08 E-value=0.013 Score=45.38 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 7 ~G~pGsGKst~a~~la 22 (184)
T PRK02496 7 LGPPGAGKGTQAVVLA 22 (184)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 397
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.07 E-value=0.042 Score=52.39 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred ceeEeeechhhhccC-----C-c-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RSILVIEDAVTSFES-----N-A-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~il~iDEiD~~~~~-----~-~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
+.+|++|-+-.++.. + + ...+.++++|..|..... ..++.+|+| |..
T Consensus 139 ~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~--~~nvtvi~T-NQv 196 (790)
T PRK09519 139 LDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALN--NSGTTAIFI-NQL 196 (790)
T ss_pred CeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--hCCCEEEEE-ecc
Confidence 889999999988851 0 1 113344566666666644 356777766 533
No 398
>PRK13946 shikimate kinase; Provisional
Probab=95.05 E-value=0.015 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.238 Sum_probs=17.4
Q ss_pred cc-CCCcHHHHHHHHH-ccccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEF 64 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v 64 (170)
.| ||+|||++++.+| .+++.-+
T Consensus 16 ~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 16 VGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeE
Confidence 49 9999999999999 4444433
No 399
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.013 Score=46.00 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=18.3
Q ss_pred cc-CCCcHHHHHHHHH-cccccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEFQ 65 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v~ 65 (170)
.| ||+||||+|+.|| .+++.++.
T Consensus 6 lG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 6 LGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 49 9999999999999 55554443
No 400
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.043 Score=45.05 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 36 ~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 36 IGPNGSGKSTLLKLLN 51 (235)
T ss_pred ECCCCCCHHHHHHHHc
Confidence 49 9999999999999
No 401
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.052 Score=41.99 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=16.8
Q ss_pred c-CCCcHHHHHHHHH-ccccccc
Q 036857 44 G-PYTGKSSLIAAMA-DLDLKEF 64 (170)
Q Consensus 44 G-PGtGKT~la~aiA-~~~l~~v 64 (170)
| .|||||++++++| .++..-+
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fi 24 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFI 24 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCcee
Confidence 8 9999999999999 4554333
No 402
>PRK06547 hypothetical protein; Provisional
Probab=95.03 E-value=0.014 Score=45.57 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 21 ~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 21 DGRSGSGKTTLAGALA 36 (172)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 403
>PRK14531 adenylate kinase; Provisional
Probab=95.03 E-value=0.014 Score=45.49 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 8 ~G~pGsGKsT~~~~la 23 (183)
T PRK14531 8 LGPPGAGKGTQAARLC 23 (183)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 404
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.043 Score=43.87 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.+.++
T Consensus 35 ~G~n~~GKstll~~i~ 50 (204)
T cd03282 35 TGPNMSGKSTYLKQIA 50 (204)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 405
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.025 Score=51.71 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCCCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 20 EHPATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
.....|++|...-+-|+.++.-+ -| +|+|||++.|++-
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 33446788877666666566555 39 9999999999998
No 406
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.01 E-value=0.014 Score=46.34 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+.++
T Consensus 6 G~sgsGKTtla~~l~ 20 (187)
T cd02024 6 GVTNSGKTTLAKLLQ 20 (187)
T ss_pred CCCCCCHHHHHHHHH
Confidence 8 9999999999999
No 407
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.97 E-value=0.034 Score=46.05 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=31.6
Q ss_pred ceeEeeechhhhcc----CCc---cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFE----SNA---YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 69 p~il~iDEiD~~~~----~~~---~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
-.+|++|-+-.++. .++ .....+..++..|-.+.. ..++.|++|..-....|.
T Consensus 134 ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~--~~~iaVvvTNqv~~~~~~ 193 (256)
T PF08423_consen 134 IKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLAR--KYNIAVVVTNQVTTKIDS 193 (256)
T ss_dssp EEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHH--HTT-EEEEEEEECSSTT-
T ss_pred eEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHH--hCCceEEeeceeeecCCc
Confidence 67999999988875 111 223566777777877776 356666665443334443
No 408
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.94 E-value=0.032 Score=50.91 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++++.++
T Consensus 347 vG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQ 362 (569)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.94 E-value=0.015 Score=45.54 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+++++++
T Consensus 6 G~~GsGKSTl~~~l~ 20 (198)
T cd02023 6 GGSGSGKTTVAEEII 20 (198)
T ss_pred CCCCCCHHHHHHHHH
Confidence 8 9999999999998
No 410
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.91 E-value=0.03 Score=52.29 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.++
T Consensus 511 vG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 511 VGGSGSGKSTIAKLVA 526 (710)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 411
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.91 E-value=0.03 Score=50.72 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| .|+|||++++.++
T Consensus 364 vG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 364 VGRSGSGKSTLVNLIP 379 (571)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 412
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.91 E-value=0.015 Score=45.92 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||+++++|+
T Consensus 12 ~G~sGsGKTTl~~~l~ 27 (209)
T PRK05480 12 AGGSGSGKTTVASTIY 27 (209)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 413
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.89 E-value=0.034 Score=51.97 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.++
T Consensus 506 vG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 506 VGMSGSGKSTLAKLLV 521 (708)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 414
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.88 E-value=0.016 Score=44.51 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||+++++|+
T Consensus 7 ~G~sGsGKttl~~~l~ 22 (179)
T TIGR02322 7 VGPSGAGKDTLLDYAR 22 (179)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 415
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.87 E-value=0.026 Score=48.66 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.9
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||||||.+|-.+|
T Consensus 73 G~pgtGKtAiAmg~s 87 (454)
T KOG2680|consen 73 GQPGTGKTAIAMGMS 87 (454)
T ss_pred cCCCCCceeeeeehh
Confidence 9 9999999888887
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.87 E-value=0.037 Score=43.66 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| -|+|||++.++|+
T Consensus 35 ~G~Ng~GKStll~~i~ 50 (202)
T cd03243 35 TGPNMGGKSTYLRSIG 50 (202)
T ss_pred ECCCCCccHHHHHHHH
Confidence 49 9999999999999
No 417
>PRK04182 cytidylate kinase; Provisional
Probab=94.87 E-value=0.016 Score=44.00 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=16.0
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
-| ||+|||++++.+| .+++
T Consensus 6 ~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 6 SGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred ECCCCCCHHHHHHHHHHHcCC
Confidence 39 9999999999999 4444
No 418
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.86 E-value=0.015 Score=45.57 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|++|+
T Consensus 6 G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 6 GPSGSGKTTLAKRLA 20 (194)
T ss_dssp ESTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 8 9999999999998
No 419
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=0.021 Score=51.42 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=35.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR 127 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR 127 (170)
+-++++||+|.++... +. .|-.++..........++|+-.|..+.=|..|.|
T Consensus 257 ~~llVlDEmD~L~tr~---~~----vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS---QT----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred eEEEEechhhHHhhcc---cc----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 7899999999997521 11 2222333333334678899999999988888863
No 420
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.84 E-value=0.068 Score=48.31 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=29.7
Q ss_pred CCCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857 21 HPATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA 57 (170)
.+.+++++.+.+++.+.+...+ -| +|+|||++.+++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L 263 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAAL 263 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3558999999998887765544 49 9999999999766
No 421
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.018 Score=49.02 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=14.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| +|.|||++.+.||
T Consensus 30 FG~SGsGKTslin~Ia 45 (352)
T COG4148 30 FGPSGSGKTSLINMIA 45 (352)
T ss_pred ecCCCCChhhHHHHHh
Confidence 79 9999999999999
No 422
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.81 E-value=0.017 Score=44.02 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 8 ~G~~GsGKst~~~~la 23 (171)
T PRK03731 8 VGARGCGKTTVGMALA 23 (171)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 423
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.77 E-value=0.049 Score=47.02 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=26.9
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.++++||--+-+. ..+...+++.+..+.. ..+.-+|++|...+.+
T Consensus 159 P~iLLlDEPts~LD-----~~t~~~i~~lL~~l~~--~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 159 PKVLLCDEATSALD-----PATTQSILELLKEINR--RLGLTILLITHEMDVV 204 (343)
T ss_pred CCEEEEeCCcccCC-----HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHH
Confidence 99999999854433 2333444444444432 1256677777766544
No 424
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.77 E-value=0.071 Score=41.49 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|..++
T Consensus 7 ~G~~~sGKS~~a~~l~ 22 (170)
T PRK05800 7 TGGARSGKSRFAERLA 22 (170)
T ss_pred ECCCCccHHHHHHHHH
Confidence 49 9999999999999
No 425
>PRK06696 uridine kinase; Validated
Probab=94.76 E-value=0.017 Score=46.37 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+.|+
T Consensus 29 G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 29 GITASGKTTFADELA 43 (223)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 426
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.12 Score=42.99 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=37.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLR 127 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllR 127 (170)
|-++++||-=. +-.-.....+++.++.+... ....-+++-|.+.+.++|.+.+
T Consensus 190 P~LLiLDEP~~-----GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 190 PELLILDEPAQ-----GLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred CCEEEecCccc-----cCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccce
Confidence 99999999721 22233455788888888764 3456677778999999998754
No 427
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.72 E-value=0.035 Score=50.86 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=31.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
|.|+++||.-+-+. ..+-..+.+.+.... .+..+|+.|.+++.+. .+|..+.+.
T Consensus 490 p~ililDEpts~LD-----~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~-------~~d~i~~l~ 543 (585)
T TIGR01192 490 APILVLDEATSALD-----VETEARVKNAIDALR----KNRTTFIIAHRLSTVR-------NADLVLFLD 543 (585)
T ss_pred CCEEEEECCccCCC-----HHHHHHHHHHHHHHh----CCCEEEEEEcChHHHH-------cCCEEEEEE
Confidence 89999999865443 223334444454442 2556777777765542 356666553
No 428
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.70 E-value=0.019 Score=44.86 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+.++
T Consensus 6 G~sgsGKttla~~l~ 20 (179)
T cd02028 6 GPSGSGKTTFAKKLS 20 (179)
T ss_pred CCCCCCHHHHHHHHH
Confidence 8 9999999999999
No 429
>PHA02624 large T antigen; Provisional
Probab=94.68 E-value=0.026 Score=52.42 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=56.8
Q ss_pred cc-CCCcHHHHHHHHH----cccccccc---ccC---------ceeEeeechhhhccCC-----ccchHHHHHHHHHhhc
Q 036857 43 WG-PYTGKSSLIAAMA----DLDLKEFQ---SNS---------RSILVIEDAVTSFESN-----AYNSVALSALLKFVDG 100 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~l~~v~---~~~---------p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg 100 (170)
|| ||||||+++.+|+ +..++ |. +.. ..+.+|||+-.-+... +..-.-+.-|-+.|||
T Consensus 437 ~GPpnTGKTtf~~sLl~~L~G~vls-VNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG 515 (647)
T PHA02624 437 KGPVNSGKTTLAAALLDLCGGKSLN-VNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDG 515 (647)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEE-eeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccchhhHHHhhcCC
Confidence 79 9999999999999 22233 32 111 6789999995433311 1111123456678888
Q ss_pred hhc-----cCCCC-----eEEEEeCCCCCCCCCCCCCCCccceEEEcCCC
Q 036857 101 LWS-----SSGDG-----RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSH 140 (170)
Q Consensus 101 ~~~-----~~~~~-----~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p 140 (170)
-.. .+.+. --.|+|||. ..||.-+.= ||-..+.|..-
T Consensus 516 ~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k 562 (647)
T PHA02624 516 SVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPK 562 (647)
T ss_pred CCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccccc
Confidence 711 00111 136788885 356666663 89999998753
No 430
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.65 E-value=0.019 Score=44.90 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=13.5
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
+ +|||||+++.|++
T Consensus 6 AtiGCGKTTva~aL~ 20 (168)
T PF08303_consen 6 ATIGCGKTTVALALS 20 (168)
T ss_pred cCCCcCHHHHHHHHH
Confidence 6 9999999999999
No 431
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.62 E-value=0.02 Score=45.69 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.8
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| .+++
T Consensus 9 ~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 9 GGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred ECCCCCCHHHHHHHHHHhcCC
Confidence 49 9999999999999 4443
No 432
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.59 E-value=0.023 Score=40.23 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+.++
T Consensus 5 ~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLC 20 (119)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 49 9999999999999
No 433
>PRK13975 thymidylate kinase; Provisional
Probab=94.57 E-value=0.021 Score=44.35 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||++++.+|
T Consensus 9 G~~GsGKtT~~~~L~ 23 (196)
T PRK13975 9 GIDGSGKTTQAKLLA 23 (196)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.52 E-value=0.022 Score=45.17 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++++++
T Consensus 12 ~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 12 GGGSGSGKTTVARKIY 27 (207)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 435
>PRK10536 hypothetical protein; Provisional
Probab=94.50 E-value=0.021 Score=47.70 Aligned_cols=15 Identities=40% Similarity=0.306 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++|.++|
T Consensus 80 ~G~aGTGKT~La~a~a 95 (262)
T PRK10536 80 TGEAGCGKTWISAAKA 95 (262)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.49 E-value=0.068 Score=45.97 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=27.0
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA 57 (170)
..+.+++++..++...+.+...- .| +|+|||++.+++.
T Consensus 100 ~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 100 SKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred CCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHH
Confidence 34557888888775555432211 49 9999999999988
No 437
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.49 E-value=0.051 Score=49.68 Aligned_cols=54 Identities=9% Similarity=0.222 Sum_probs=30.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
|.|+++||.-+-+. ..+-..+.+.+.... .+..+|+.|.+++.+ + ..|..+.+.
T Consensus 494 ~~ililDE~ts~lD-----~~t~~~i~~~l~~~~----~~~tviiitHr~~~~-----~--~~d~i~~l~ 547 (574)
T PRK11160 494 APLLLLDEPTEGLD-----AETERQILELLAEHA----QNKTVLMITHRLTGL-----E--QFDRICVMD 547 (574)
T ss_pred CCEEEEeCCcccCC-----HHHHHHHHHHHHHHc----CCCEEEEEecChhHH-----H--hCCEEEEEe
Confidence 99999999855443 223344555555543 245566666665543 2 356666554
No 438
>PRK13948 shikimate kinase; Provisional
Probab=94.48 E-value=0.026 Score=44.52 Aligned_cols=19 Identities=37% Similarity=0.251 Sum_probs=15.9
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
-| ||+|||++++.+| .++.
T Consensus 16 iG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 16 AGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred ECCCCCCHHHHHHHHHHHcCC
Confidence 39 9999999999999 4443
No 439
>PRK14527 adenylate kinase; Provisional
Probab=94.47 E-value=0.023 Score=44.42 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 12 ~G~pGsGKsT~a~~La 27 (191)
T PRK14527 12 LGPPGAGKGTQAERLA 27 (191)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 440
>PLN02200 adenylate kinase family protein
Probab=94.47 E-value=0.022 Score=46.49 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.4
Q ss_pred cc-CCCcHHHHHHHHH-ccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~ 62 (170)
.| ||+|||++|+.+| ..++.
T Consensus 49 ~G~PGSGKsT~a~~La~~~g~~ 70 (234)
T PLN02200 49 LGGPGSGKGTQCEKIVETFGFK 70 (234)
T ss_pred ECCCCCCHHHHHHHHHHHhCCe
Confidence 59 9999999999999 34443
No 441
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.44 E-value=0.11 Score=41.39 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||.++..++
T Consensus 22 ~G~~G~GKt~~~~~~~ 37 (224)
T TIGR03880 22 IGEYGTGKTTFSLQFL 37 (224)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999888
No 442
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.062 Score=49.26 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|+|||++...++
T Consensus 353 vG~SGaGKSTLl~lL~ 368 (559)
T COG4988 353 VGASGAGKSTLLNLLL 368 (559)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 69 9999999999999
No 443
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.066 Score=43.29 Aligned_cols=48 Identities=8% Similarity=0.235 Sum_probs=27.0
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
|.+++-||=- +.-....-.++++.+..+.. .+.-|++||...+.++..
T Consensus 156 P~vLlADEPT-----GNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 156 PAVLLADEPT-----GNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRM 203 (223)
T ss_pred CCeEeecCCC-----CCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhc
Confidence 8888888751 12222333444555555543 366777777766655543
No 444
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.14 Score=42.35 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| =|+|||||+.+|+
T Consensus 36 MGPNGsGKSTLa~~i~ 51 (251)
T COG0396 36 MGPNGSGKSTLAYTIM 51 (251)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 8999999999999
No 445
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.39 E-value=0.026 Score=46.12 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=16.8
Q ss_pred cc-CCCcHHHHHHHHH-cccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKE 63 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~ 63 (170)
.| ||+|||++|+.+| ..++..
T Consensus 12 ~G~PGsGK~T~a~~La~~~g~~~ 34 (229)
T PTZ00088 12 FGAPGVGKGTFAEILSKKENLKH 34 (229)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcE
Confidence 69 9999999999999 334433
No 446
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.38 E-value=0.025 Score=44.49 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=17.3
Q ss_pred cc-CCCcHHHHHHHHH-ccccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEF 64 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v 64 (170)
-| +|+|||++.|++| .+++.-+
T Consensus 8 iG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 8 IGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred EcCCCCCHhHHHHHHHHHcCCCcc
Confidence 39 9999999999999 4444333
No 447
>PRK14528 adenylate kinase; Provisional
Probab=94.36 E-value=0.025 Score=44.33 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 7 ~G~pGsGKtt~a~~la 22 (186)
T PRK14528 7 MGPPGAGKGTQAKILC 22 (186)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 448
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.36 E-value=0.026 Score=42.53 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=22.3
Q ss_pred cc-CCCcHHHHHHHHH-ccccccccccCceeEeeech
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEFQSNSRSILVIEDA 77 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v~~~~p~il~iDEi 77 (170)
.| .|+|||+++|+++ .++... ..++|..-++.+-
T Consensus 28 ~G~lGaGKTtl~~~l~~~lg~~~-~v~SPTf~lv~~Y 63 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQGLGIQG-NVTSPTFTLVNEY 63 (133)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCC-cccCCCeeeeeec
Confidence 59 9999999999999 444321 2233555555544
No 449
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.35 E-value=0.12 Score=43.43 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| .|+|||++.+.+.
T Consensus 82 ~G~g~nGKStl~~~l~ 97 (304)
T TIGR01613 82 YGNGGNGKSTFQNLLS 97 (304)
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999887
No 450
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.33 E-value=0.047 Score=49.50 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.++
T Consensus 372 vG~sGsGKSTLlklL~ 387 (576)
T TIGR02204 372 VGPSGAGKSTLFQLLL 387 (576)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 451
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.33 E-value=0.03 Score=52.19 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.8
Q ss_pred ccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 28 IATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 28 v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
-.+++.+++.+...+ +| ||||||+++.+++
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHH
Confidence 456778777765433 79 9999999888776
No 452
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.33 E-value=0.14 Score=39.63 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=24.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
..+|++||+-.....+ -.....+++.++.- ++..=+|+|.+.
T Consensus 96 ~dLlVLDEi~~a~~~g---li~~~~v~~ll~~r----p~~~evIlTGr~ 137 (159)
T cd00561 96 YDLVILDEINYALGYG---LLDVEEVVDLLKAK----PEDLELVLTGRN 137 (159)
T ss_pred CCEEEEechHhHhhCC---CCCHHHHHHHHHcC----CCCCEEEEECCC
Confidence 7899999995544311 12234455555443 456667777753
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.29 E-value=0.026 Score=44.82 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 5 ~G~pGsGKsT~a~~La 20 (210)
T TIGR01351 5 LGPPGSGKGTQAKRIA 20 (210)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 454
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.26 E-value=0.027 Score=49.65 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||+|+++||
T Consensus 225 ~G~~gsGKTTL~~~La 240 (399)
T PRK08099 225 LGGESSGKSTLVNKLA 240 (399)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 455
>PTZ00301 uridine kinase; Provisional
Probab=94.25 E-value=0.027 Score=45.44 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=13.4
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+.|+
T Consensus 10 G~SgSGKTTla~~l~ 24 (210)
T PTZ00301 10 GASGSGKSSLSTNIV 24 (210)
T ss_pred CCCcCCHHHHHHHHH
Confidence 8 9999999999997
No 456
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.24 E-value=0.11 Score=46.46 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 100 ~G~pGsGKTTL~lq~a 115 (454)
T TIGR00416 100 GGDPGIGKSTLLLQVA 115 (454)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999988
No 457
>PRK07667 uridine kinase; Provisional
Probab=94.23 E-value=0.028 Score=44.28 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=13.6
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|+.++
T Consensus 24 G~~gsGKStla~~L~ 38 (193)
T PRK07667 24 GLSRSGKTTFVANLK 38 (193)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 458
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.21 E-value=0.13 Score=41.81 Aligned_cols=15 Identities=47% Similarity=0.496 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| .|+|||++.+.++
T Consensus 37 tG~N~~GKStll~~i~ 52 (222)
T cd03287 37 TGPNMGGKSSYIRQVA 52 (222)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 459
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.15 E-value=0.2 Score=45.17 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||+++..++
T Consensus 37 ~G~pGsGKT~l~~qf~ 52 (509)
T PRK09302 37 SGTAGTGKTLFALQFL 52 (509)
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999999887
No 460
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.14 E-value=0.1 Score=43.96 Aligned_cols=48 Identities=8% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
|.++|+||=-+= -.......+.+.|..+.. ..+..|+++|..++.+..
T Consensus 155 P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~--~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 155 PELLILDEPTSG-----LDPESRREIWELLRELAK--EGGVTILLSTHILEEAEE 202 (293)
T ss_pred CCEEEECCCCcC-----CCHHHHHHHHHHHHHHHh--CCCcEEEEeCCcHHHHHH
Confidence 999999997332 223344455555656654 234788889887775533
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.12 E-value=0.03 Score=43.64 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 8 ~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 8 MGPSGSGKDSLLAALR 23 (186)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 462
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.11 E-value=0.065 Score=48.53 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 350 vG~sGsGKSTL~~ll~ 365 (544)
T TIGR01842 350 IGPSGSGKSTLARLIV 365 (544)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 463
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.11 E-value=0.031 Score=42.16 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=15.9
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| .+++
T Consensus 6 ~G~~GSGKstia~~la~~lg~ 26 (171)
T TIGR02173 6 SGPPGSGKTTVAKILAEKLSL 26 (171)
T ss_pred ECCCCCCHHHHHHHHHHHcCC
Confidence 49 9999999999999 3444
No 464
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.10 E-value=0.03 Score=44.61 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++|+.+|
T Consensus 6 ~G~pGsGKsT~a~~la 21 (215)
T PRK00279 6 LGPPGAGKGTQAKFIA 21 (215)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 465
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=94.09 E-value=0.043 Score=44.34 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=22.7
Q ss_pred ceeEeeechhhhccCCccchH---HHHHHHHHhhchhccCCCCeEEEEeCC--CCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSV---ALSALLKFVDGLWSSSGDGRILVMTTD--YKDHIDPVP 125 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~---~~~~ll~~lDg~~~~~~~~~~vi~tTN--~~~~lD~Al 125 (170)
|.|+++||+=.--..++.... .+.++|+ .++=|+.|.| |.+++.+.+
T Consensus 84 P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~----------aGIdV~TTlNvqHlESlnd~V 135 (211)
T PF02702_consen 84 PQVVLVDELAHTNAPGSRHKKRYQDVEELLD----------AGIDVYTTLNVQHLESLNDVV 135 (211)
T ss_dssp -SEEEES-TT-B--TT-SSSBHHHHHHHHHH----------TT-EEEEEEEGGGBGGGHHHH
T ss_pred CCEEEeCcccccCCCCCCCcccHHhHHHHHH----------CCCeEEEeeeHHHhhhhHHHH
Confidence 999999998554432222222 2334443 2555677777 666655444
No 466
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.03 E-value=0.031 Score=45.13 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=13.6
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+||||+|+.|+
T Consensus 6 G~sGSGKTTla~~L~ 20 (220)
T cd02025 6 GSVAVGKSTTARVLQ 20 (220)
T ss_pred CCCCCCHHHHHHHHH
Confidence 8 9999999999998
No 467
>PRK14526 adenylate kinase; Provisional
Probab=94.00 E-value=0.033 Score=44.89 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.+|
T Consensus 6 ~G~pGsGKsT~a~~La 21 (211)
T PRK14526 6 LGPPGSGKGTIAKILS 21 (211)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 468
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.99 E-value=0.033 Score=43.41 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++++++
T Consensus 9 ~G~sGsGKSTl~~~la 24 (176)
T PRK09825 9 MGVSGSGKSLIGSKIA 24 (176)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 469
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.92 E-value=0.14 Score=42.70 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|||||++.|.|.
T Consensus 40 iGgSGsGKStlLr~I~ 55 (263)
T COG1127 40 LGGSGSGKSTLLRLIL 55 (263)
T ss_pred ECCCCcCHHHHHHHHh
Confidence 39 9999999999999
No 470
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.87 E-value=0.036 Score=44.27 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 29 ~G~~GsGKT~l~~~la 44 (225)
T PRK09361 29 YGPPGSGKTNICLQLA 44 (225)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999999
No 471
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.86 E-value=0.036 Score=43.64 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+++++++
T Consensus 31 G~~GsGKSTla~~l~ 45 (198)
T PRK03846 31 GLSGSGKSTVAGALE 45 (198)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 472
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.85 E-value=0.046 Score=46.96 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|+|||++.|.||
T Consensus 34 lGpSGaGKsTlLRiIA 49 (345)
T COG1118 34 LGPSGAGKSTLLRIIA 49 (345)
T ss_pred ECCCCCcHHHHHHHHh
Confidence 59 9999999999999
No 473
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.85 E-value=0.036 Score=42.91 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 10 iG~~GaGKStl~~~La 25 (172)
T PRK05057 10 VGPMGAGKSTIGRQLA 25 (172)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 49 9999999999999
No 474
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.84 E-value=0.12 Score=42.37 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+|...++
T Consensus 37 ~GpSGSGKSTLLniig 52 (226)
T COG1136 37 VGPSGSGKSTLLNLLG 52 (226)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 475
>PRK12338 hypothetical protein; Provisional
Probab=93.83 E-value=0.035 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.4
Q ss_pred cc-CCCcHHHHHHHHH-ccccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKEF 64 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~v 64 (170)
-| ||+|||++|+++| .+++..+
T Consensus 10 ~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 10 GSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred ECCCCCCHHHHHHHHHHHCCCeEE
Confidence 38 9999999999999 4454444
No 476
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.79 E-value=0.043 Score=42.55 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.9
Q ss_pred cc-CCCcHHHHHHHHHcccc
Q 036857 43 WG-PYTGKSSLIAAMADLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~l 61 (170)
.| ||+|||++++.++..++
T Consensus 5 tG~~gsGKst~~~~l~~~g~ 24 (179)
T cd02022 5 TGGIGSGKSTVAKLLKELGI 24 (179)
T ss_pred ECCCCCCHHHHHHHHHHCCC
Confidence 49 99999999999994443
No 477
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.76 E-value=0.038 Score=42.83 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++++.++
T Consensus 10 G~~GsGKsT~~~~L~ 24 (195)
T TIGR00041 10 GIDGAGKTTQANLLK 24 (195)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 478
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.059 Score=43.92 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCcccCCCCCCCCcccccCChhhHHHhhcCccc-CCCcHHHHHHHHH
Q 036857 12 SYWNSNKFEHPATSNTIATDFDMNKALVDDYWG-PYTGKSSLIAAMA 57 (170)
Q Consensus 12 ~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~~G-PGtGKT~la~aiA 57 (170)
+-|.+++-.+...++++-+.-.-.+.++ . .| +|||||++...+|
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv-~-lGpSGcGKTTLLnl~A 52 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVV-V-LGPSGCGKTTLLNLIA 52 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEE-E-EcCCCccHHHHHHHHh
Confidence 3455544444334555544322222111 1 49 9999999999999
No 479
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.75 E-value=0.11 Score=42.89 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||.+|++|+
T Consensus 40 GESGSGKSLiAK~Ic 54 (330)
T COG4170 40 GESGSGKSLIAKAIC 54 (330)
T ss_pred ccCCCchhHHHHHHh
Confidence 9 9999999999999
No 480
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.72 E-value=0.091 Score=45.23 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=26.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
|.++++||--+-+. ......+.+.+..+.. .+..||++|...+.+.
T Consensus 191 P~lLiLDEPt~gLD-----~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~ 236 (340)
T PRK13536 191 PQLLILDEPTTGLD-----PHARHLIWERLRSLLA---RGKTILLTTHFMEEAE 236 (340)
T ss_pred CCEEEEECCCCCCC-----HHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHH
Confidence 89999998744332 2223344444444432 3567788887766553
No 481
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.68 E-value=0.041 Score=42.05 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 6 ~G~~G~GKTt~~~~la 21 (173)
T cd03115 6 VGLQGVGKTTTAAKLA 21 (173)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 482
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.64 E-value=0.93 Score=43.67 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=38.8
Q ss_pred CCCcccCCCCCCCCcccccCChhhHHHhhcCc------c-c-CCCcHHHHHHHHH
Q 036857 11 PSYWNSNKFEHPATSNTIATDFDMNKALVDDY------W-G-PYTGKSSLIAAMA 57 (170)
Q Consensus 11 ~~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~------~-G-PGtGKT~la~aiA 57 (170)
...|-+..+.+|..-..-+.-|.+...+.... + - .|-|||+++-..+
T Consensus 4 ~~~~~~sk~~~P~~~~~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 4 ALMLIPSKLVRPVRPDNYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred CCCCCccccCCCCCcccccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHH
Confidence 36788888999999888888888888887764 3 4 6999999998885
No 483
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.091 Score=46.96 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
..|+.+..-.+.++.+...+ .| +|+|||++.|-+-
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf 310 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF 310 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH
Confidence 45777777777777776666 59 9999999999987
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.62 E-value=0.042 Score=42.03 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 7 ~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 7 SGPSGVGKSTLVKALL 22 (180)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 485
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.56 E-value=0.048 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=18.7
Q ss_pred c-CCCcHHHHHHHHHcccccccccc
Q 036857 44 G-PYTGKSSLIAAMADLDLKEFQSN 67 (170)
Q Consensus 44 G-PGtGKT~la~aiA~~~l~~v~~~ 67 (170)
| ||+|||++|+.+++.++..+..+
T Consensus 9 G~igsGKStva~~~~~~G~~vidaD 33 (201)
T COG0237 9 GGIGSGKSTVAKILAELGFPVIDAD 33 (201)
T ss_pred cCCCCCHHHHHHHHHHcCCeEEEcc
Confidence 8 99999999999996555544433
No 486
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.54 E-value=0.044 Score=42.55 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||++++.++
T Consensus 6 G~~GsGKSTl~~~L~ 20 (193)
T cd01673 6 GNIGAGKSTLAKELA 20 (193)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.54 E-value=0.044 Score=41.98 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||++++.++
T Consensus 7 G~~GsGKtT~~~~L~ 21 (200)
T cd01672 7 GIDGAGKTTLIELLA 21 (200)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.52 E-value=0.045 Score=42.87 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 11 ~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 11 SGPSGAGKSTLVKALL 26 (205)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 489
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.51 E-value=0.046 Score=42.33 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++|++++
T Consensus 24 ~G~~GsGKstla~~l~ 39 (184)
T TIGR00455 24 TGLSGSGKSTIANALE 39 (184)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 490
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=93.49 E-value=0.047 Score=38.37 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 2 iG~~~~GKStl~~~l~ 17 (157)
T cd00882 2 VGDSGVGKTSLLNRLL 17 (157)
T ss_pred CCcCCCcHHHHHHHHH
Confidence 39 9999999999998
No 491
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.47 E-value=0.044 Score=45.25 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||++|..+|
T Consensus 42 ~G~pGtGKT~l~~qf~ 57 (259)
T TIGR03878 42 TGVSDTGKSLMVEQFA 57 (259)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 69 9999999999887
No 492
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.45 E-value=0.16 Score=41.21 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|.|||++.+.++
T Consensus 36 tG~n~~gKs~~l~~i~ 51 (218)
T cd03286 36 TGPNMGGKSTLLRTVC 51 (218)
T ss_pred ECCCCCchHHHHHHHH
Confidence 59 9999999999998
No 493
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.42 E-value=0.046 Score=43.32 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 4 ~G~pGsGKSt~i~~~~ 19 (234)
T PF01443_consen 4 HGVPGSGKSTLIKKLL 19 (234)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 494
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.41 E-value=0.057 Score=45.78 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.5
Q ss_pred c-CCCcHHHHHHHHH-cccc
Q 036857 44 G-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 44 G-PGtGKT~la~aiA-~~~l 61 (170)
| ||||||++++.+| .+++
T Consensus 140 G~~GsGKStvg~~La~~Lg~ 159 (309)
T PRK08154 140 GLRGAGKSTLGRMLAARLGV 159 (309)
T ss_pred CCCCCCHHHHHHHHHHHcCC
Confidence 9 9999999999999 4443
No 495
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.41 E-value=0.049 Score=38.72 Aligned_cols=16 Identities=50% Similarity=0.794 Sum_probs=14.7
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| ||+|||++.+++.+
T Consensus 5 iG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTG 21 (116)
T ss_dssp EESTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 49 99999999999993
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.37 E-value=0.092 Score=48.24 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.2
Q ss_pred CCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857 23 ATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA 57 (170)
.+++++.+.++..+.+...+ -| .|+|||++..++.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l 337 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL 337 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 57899999998777766544 39 9999999987766
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.37 E-value=0.049 Score=43.51 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||||||+++..+|
T Consensus 25 ~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 25 FGEFGSGKTQLCHQLA 40 (235)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999997
No 498
>PRK15453 phosphoribulokinase; Provisional
Probab=93.33 E-value=0.049 Score=46.20 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+++++++
T Consensus 12 G~SGsGKTTva~~l~ 26 (290)
T PRK15453 12 GSSGAGTTTVKRAFE 26 (290)
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 499
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.30 E-value=0.046 Score=46.97 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.6
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||||||.+|-.+|
T Consensus 7 ~G~aGTGKTvla~~l~ 22 (352)
T PF09848_consen 7 TGGAGTGKTVLALNLA 22 (352)
T ss_pred EecCCcCHHHHHHHHH
Confidence 39 9999999999888
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.29 E-value=0.26 Score=44.42 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=13.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||++|..++
T Consensus 27 ~G~pGsGKT~la~qfl 42 (484)
T TIGR02655 27 SGTSGTGKTLFSIQFL 42 (484)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999886
Done!