Query 036857
Match_columns 170
No_of_seqs 137 out of 1143
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3E-32 1E-36 236.5 12.8 147 20-168 142-362 (405)
2 4b4t_M 26S protease regulatory 100.0 1.2E-31 4.1E-36 234.7 14.8 149 18-168 173-395 (434)
3 4b4t_I 26S protease regulatory 100.0 1.1E-31 3.6E-36 234.5 14.0 149 18-168 174-396 (437)
4 4b4t_L 26S protease subunit RP 100.0 2.3E-31 7.8E-36 233.1 14.5 147 20-168 175-395 (437)
5 4b4t_K 26S protease regulatory 100.0 6.4E-31 2.2E-35 229.8 12.3 148 19-168 165-387 (428)
6 4b4t_H 26S protease regulatory 100.0 1.1E-30 3.9E-35 229.7 12.5 149 18-168 201-423 (467)
7 3cf2_A TER ATPase, transitiona 99.9 1.8E-28 6E-33 227.9 7.6 147 20-168 471-691 (806)
8 3cf2_A TER ATPase, transitiona 99.9 8.2E-26 2.8E-30 210.0 13.3 146 21-168 199-415 (806)
9 2x8a_A Nuclear valosin-contain 99.9 7.9E-24 2.7E-28 174.3 6.7 146 21-168 5-226 (274)
10 3cf0_A Transitional endoplasmi 99.9 1.1E-22 3.9E-27 168.6 11.8 121 20-142 9-188 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.2E-21 4E-26 164.4 12.5 145 21-168 7-223 (322)
12 2ce7_A Cell division protein F 99.9 1.3E-21 4.4E-26 173.0 13.0 120 21-142 11-188 (476)
13 3eie_A Vacuolar protein sortin 99.9 1.2E-21 4.2E-26 163.6 10.8 149 17-168 9-228 (322)
14 1lv7_A FTSH; alpha/beta domain 99.9 4.2E-21 1.4E-25 154.6 12.7 122 19-142 5-184 (257)
15 3h4m_A Proteasome-activating n 99.9 4.1E-21 1.4E-25 156.2 12.0 123 18-142 9-190 (285)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.7E-21 9.2E-26 154.8 10.2 119 22-142 2-179 (262)
17 1ypw_A Transitional endoplasmi 99.8 2.1E-21 7.3E-26 180.5 4.8 122 19-142 470-650 (806)
18 2qp9_X Vacuolar protein sortin 99.8 1.6E-20 5.4E-25 159.4 9.6 121 19-142 44-219 (355)
19 2zan_A Vacuolar protein sortin 99.8 2.9E-20 9.9E-25 162.3 11.0 147 19-168 127-345 (444)
20 3hu3_A Transitional endoplasmi 99.8 4.8E-20 1.7E-24 163.2 12.1 120 21-142 199-374 (489)
21 1ixz_A ATP-dependent metallopr 99.8 9.9E-20 3.4E-24 146.3 12.6 122 19-142 9-188 (254)
22 2dhr_A FTSH; AAA+ protein, hex 99.8 5E-20 1.7E-24 163.6 11.8 120 21-142 26-203 (499)
23 2r62_A Cell division protease 99.8 8.6E-21 3E-25 153.2 6.0 122 20-142 5-185 (268)
24 3t15_A Ribulose bisphosphate c 99.8 1.7E-20 5.7E-25 155.4 7.4 98 43-142 42-187 (293)
25 3vfd_A Spastin; ATPase, microt 99.8 1.2E-19 4.2E-24 155.0 11.1 125 16-142 105-284 (389)
26 3d8b_A Fidgetin-like protein 1 99.8 2.7E-19 9.3E-24 151.7 11.6 122 19-142 77-253 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.8 8.7E-19 3E-23 143.4 10.2 122 19-142 14-191 (297)
28 1iy2_A ATP-dependent metallopr 99.8 1E-18 3.5E-23 142.6 9.8 123 18-142 32-212 (278)
29 2c9o_A RUVB-like 1; hexameric 99.7 1.5E-18 5.2E-23 151.5 3.0 120 23-142 34-226 (456)
30 1ypw_A Transitional endoplasmi 99.7 6.8E-17 2.3E-21 150.3 10.3 122 19-142 197-374 (806)
31 1g41_A Heat shock protein HSLU 99.6 4.2E-17 1.5E-21 143.0 0.6 97 43-143 56-181 (444)
32 3pfi_A Holliday junction ATP-d 99.6 7.1E-15 2.4E-19 122.1 10.8 121 12-142 17-186 (338)
33 3u61_B DNA polymerase accessor 99.5 9.5E-15 3.3E-19 120.8 7.3 115 16-142 16-167 (324)
34 1d2n_A N-ethylmaleimide-sensit 99.5 1.2E-14 4.2E-19 117.7 7.6 118 43-165 70-220 (272)
35 3syl_A Protein CBBX; photosynt 99.5 1.1E-14 3.9E-19 119.1 7.2 110 27-142 32-206 (309)
36 1hqc_A RUVB; extended AAA-ATPa 99.5 1.2E-13 3.9E-18 113.6 12.8 116 19-142 5-170 (324)
37 2chg_A Replication factor C sm 99.5 1.3E-13 4.5E-18 105.5 10.1 113 17-142 8-163 (226)
38 2r44_A Uncharacterized protein 99.4 1.1E-13 3.8E-18 114.8 6.7 115 20-142 21-187 (331)
39 1ofh_A ATP-dependent HSL prote 99.4 5.5E-13 1.9E-17 108.4 8.8 98 43-142 56-204 (310)
40 1jbk_A CLPB protein; beta barr 99.4 2.1E-13 7.2E-18 102.1 5.8 115 19-142 15-187 (195)
41 2chq_A Replication factor C sm 99.4 7.9E-13 2.7E-17 107.7 9.6 115 15-142 6-163 (319)
42 3uk6_A RUVB-like 2; hexameric 99.4 1.1E-12 3.9E-17 109.6 10.7 61 69-142 190-261 (368)
43 3m6a_A ATP-dependent protease 99.4 1.2E-13 4.2E-18 123.2 5.1 113 25-142 80-255 (543)
44 1g8p_A Magnesium-chelatase 38 99.4 5.9E-13 2E-17 110.3 8.4 116 19-142 17-220 (350)
45 1njg_A DNA polymerase III subu 99.4 2E-12 6.8E-17 99.6 10.8 112 18-142 15-187 (250)
46 2p65_A Hypothetical protein PF 99.4 8E-14 2.7E-18 104.6 2.7 114 19-141 15-187 (187)
47 1iqp_A RFCS; clamp loader, ext 99.4 1.5E-12 5.2E-17 106.3 8.5 114 16-142 15-171 (327)
48 3hws_A ATP-dependent CLP prote 99.3 1E-12 3.5E-17 110.8 6.3 59 43-101 57-157 (363)
49 3pvs_A Replication-associated 99.3 1.4E-12 4.7E-17 114.1 6.8 110 18-142 18-167 (447)
50 1sxj_D Activator 1 41 kDa subu 99.3 4.5E-12 1.5E-16 104.9 9.6 113 17-142 28-194 (353)
51 4fcw_A Chaperone protein CLPB; 99.3 2.2E-12 7.6E-17 105.3 7.6 66 69-142 120-218 (311)
52 3bos_A Putative DNA replicatio 99.3 2.7E-11 9.2E-16 94.3 11.5 116 19-142 21-176 (242)
53 3pxi_A Negative regulator of g 99.3 1.1E-11 3.9E-16 113.9 9.9 92 43-142 527-664 (758)
54 3f9v_A Minichromosome maintena 99.3 7.8E-12 2.7E-16 112.9 8.2 110 26-143 295-481 (595)
55 1jr3_A DNA polymerase III subu 99.3 4.2E-11 1.4E-15 99.7 11.5 112 18-142 8-180 (373)
56 1sxj_B Activator 1 37 kDa subu 99.2 1.3E-11 4.4E-16 100.6 7.9 113 17-142 12-168 (323)
57 1r6b_X CLPA protein; AAA+, N-t 99.2 1.6E-11 5.4E-16 112.7 9.3 115 20-142 180-351 (758)
58 1l8q_A Chromosomal replication 99.2 3.9E-11 1.3E-15 99.2 10.2 91 43-142 43-168 (324)
59 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 1.8E-11 6.2E-16 108.6 8.7 110 27-145 23-187 (500)
60 1sxj_A Activator 1 95 kDa subu 99.2 5.2E-11 1.8E-15 105.4 11.3 116 16-142 29-211 (516)
61 1sxj_E Activator 1 40 kDa subu 99.2 6.9E-11 2.3E-15 98.2 11.5 114 16-142 4-195 (354)
62 1um8_A ATP-dependent CLP prote 99.2 7.9E-12 2.7E-16 105.7 5.8 96 43-142 78-232 (376)
63 1qvr_A CLPB protein; coiled co 99.2 1.3E-11 4.3E-16 115.2 7.4 113 21-142 165-334 (854)
64 2v1u_A Cell division control p 99.2 3.2E-11 1.1E-15 100.3 9.0 113 25-142 18-203 (387)
65 1r6b_X CLPA protein; AAA+, N-t 99.2 4.1E-11 1.4E-15 109.9 9.4 92 43-142 494-655 (758)
66 1sxj_C Activator 1 40 kDa subu 99.2 5E-11 1.7E-15 99.5 9.0 114 16-142 15-171 (340)
67 1in4_A RUVB, holliday junction 99.1 3.4E-10 1.2E-14 94.7 11.4 119 16-142 15-182 (334)
68 3pxg_A Negative regulator of g 99.1 3.5E-11 1.2E-15 105.4 5.5 105 19-142 173-327 (468)
69 2bjv_A PSP operon transcriptio 99.1 1.4E-10 4.8E-15 93.2 7.8 112 23-142 3-181 (265)
70 3pxi_A Negative regulator of g 99.1 7E-11 2.4E-15 108.6 5.8 104 20-142 174-327 (758)
71 2qby_A CDC6 homolog 1, cell di 99.0 5.6E-10 1.9E-14 92.5 8.9 112 24-142 18-199 (386)
72 3n70_A Transport activator; si 99.0 3.7E-10 1.3E-14 83.6 6.8 65 43-118 30-116 (145)
73 3co5_A Putative two-component 99.0 1.5E-10 5.2E-15 85.6 4.5 67 43-118 33-116 (143)
74 2qby_B CDC6 homolog 3, cell di 99.0 3.3E-10 1.1E-14 94.6 6.7 62 69-142 134-199 (384)
75 2z4s_A Chromosomal replication 99.0 6E-10 2E-14 96.9 8.3 92 43-142 136-265 (440)
76 1fnn_A CDC6P, cell division co 99.0 7.2E-10 2.5E-14 92.4 8.4 66 69-142 126-195 (389)
77 3k1j_A LON protease, ATP-depen 99.0 2.7E-10 9.2E-15 102.6 4.9 40 18-57 33-81 (604)
78 1ojl_A Transcriptional regulat 99.0 3.2E-09 1.1E-13 88.0 9.9 66 69-142 97-177 (304)
79 1a5t_A Delta prime, HOLB; zinc 98.9 3.4E-09 1.2E-13 88.6 9.7 61 69-142 109-169 (334)
80 4akg_A Glutathione S-transfera 98.9 4.1E-09 1.4E-13 107.9 12.0 71 69-142 1337-1420(2695)
81 3ec2_A DNA replication protein 98.9 2.1E-09 7.3E-14 81.5 7.6 70 43-119 44-144 (180)
82 3te6_A Regulatory protein SIR3 98.9 1.1E-09 3.7E-14 92.2 6.4 63 69-142 133-200 (318)
83 1qvr_A CLPB protein; coiled co 98.9 2E-09 6.9E-14 100.4 7.9 66 69-142 661-759 (854)
84 2gno_A DNA polymerase III, gam 98.7 6.8E-09 2.3E-13 86.5 4.9 85 43-142 24-141 (305)
85 1svm_A Large T antigen; AAA+ f 98.6 1.7E-08 5.9E-13 86.6 4.3 91 43-141 175-286 (377)
86 2w58_A DNAI, primosome compone 98.5 8.6E-08 3E-12 73.6 5.2 15 43-57 60-75 (202)
87 1w5s_A Origin recognition comp 98.5 1.4E-07 4.7E-12 79.2 5.6 71 69-142 139-217 (412)
88 2r2a_A Uncharacterized protein 98.4 1.2E-07 4.1E-12 74.5 3.7 68 69-142 88-155 (199)
89 3cmw_A Protein RECA, recombina 98.3 2.9E-07 1E-11 91.3 5.2 48 69-119 1161-1219(1706)
90 2vhj_A Ntpase P4, P4; non- hyd 98.3 6.4E-07 2.2E-11 75.7 5.7 80 43-125 129-242 (331)
91 2kjq_A DNAA-related protein; s 98.3 6.8E-07 2.3E-11 66.7 4.9 72 43-122 42-130 (149)
92 2qgz_A Helicase loader, putati 98.3 8.1E-07 2.8E-11 73.7 5.2 15 43-57 158-173 (308)
93 1tue_A Replication protein E1; 98.1 1.1E-06 3.7E-11 70.0 3.4 92 43-141 64-180 (212)
94 3f8t_A Predicted ATPase involv 98.1 1.2E-06 4.3E-11 77.4 3.4 104 28-142 215-383 (506)
95 4akg_A Glutathione S-transfera 98.0 7.7E-06 2.6E-10 84.2 6.7 91 43-142 651-782 (2695)
96 3vkg_A Dynein heavy chain, cyt 97.9 4.5E-05 1.5E-09 79.5 9.8 71 69-142 1375-1458(3245)
97 3cmu_A Protein RECA, recombina 97.8 2.1E-05 7.4E-10 79.2 5.6 47 69-118 1506-1563(2050)
98 1ny5_A Transcriptional regulat 97.7 7.6E-05 2.6E-09 63.5 6.9 43 69-117 232-281 (387)
99 1u0j_A DNA replication protein 97.4 0.00018 6.1E-09 59.0 5.1 15 43-57 110-125 (267)
100 2fna_A Conserved hypothetical 97.3 0.0035 1.2E-07 50.7 12.1 32 25-57 12-51 (357)
101 3vkg_A Dynein heavy chain, cyt 97.2 0.00061 2.1E-08 71.3 7.5 91 43-142 610-742 (3245)
102 3dzd_A Transcriptional regulat 97.1 0.00072 2.5E-08 57.2 6.6 15 43-57 158-173 (368)
103 2zr9_A Protein RECA, recombina 96.9 0.00065 2.2E-08 57.2 4.2 15 43-57 67-82 (349)
104 3hr8_A Protein RECA; alpha and 96.9 0.0021 7E-08 54.6 6.9 47 69-118 140-197 (356)
105 1g41_A Heat shock protein HSLU 96.8 0.002 6.7E-08 56.3 6.1 71 69-142 251-338 (444)
106 2ehv_A Hypothetical protein PH 96.8 0.0034 1.2E-07 48.6 6.9 63 69-139 136-207 (251)
107 1xp8_A RECA protein, recombina 96.7 0.0029 9.8E-08 53.8 6.9 44 69-114 153-207 (366)
108 4gp7_A Metallophosphoesterase; 96.6 0.00061 2.1E-08 51.1 1.7 49 69-120 102-161 (171)
109 3cmu_A Protein RECA, recombina 96.6 0.0045 1.5E-07 62.7 7.9 47 11-57 1045-1102(2050)
110 1u94_A RECA protein, recombina 96.5 0.0021 7.3E-08 54.3 4.4 44 69-114 142-196 (356)
111 1nlf_A Regulatory protein REPA 96.4 0.0048 1.6E-07 49.5 5.9 46 69-116 134-179 (279)
112 1qhx_A CPT, protein (chloramph 96.2 0.0016 5.6E-08 48.1 2.0 15 43-57 9-24 (178)
113 3sfz_A APAF-1, apoptotic pepti 96.2 0.022 7.7E-07 53.4 9.9 36 22-57 120-168 (1249)
114 1ly1_A Polynucleotide kinase; 96.2 0.0018 6.2E-08 47.6 2.0 16 43-58 8-24 (181)
115 3kb2_A SPBC2 prophage-derived 96.1 0.002 6.8E-08 47.1 2.0 15 43-57 7-22 (173)
116 2zts_A Putative uncharacterize 96.1 0.013 4.5E-07 45.1 6.8 15 43-57 36-51 (251)
117 3upu_A ATP-dependent DNA helic 96.1 0.0026 8.9E-08 55.0 2.8 40 16-57 14-66 (459)
118 3jvv_A Twitching mobility prot 96.1 0.021 7.1E-07 48.2 8.3 37 21-57 102-144 (356)
119 3rlf_A Maltose/maltodextrin im 96.0 0.01 3.4E-07 50.8 6.1 15 43-57 35-50 (381)
120 1kag_A SKI, shikimate kinase I 96.0 0.0025 8.5E-08 46.9 2.0 15 43-57 10-25 (173)
121 4b3f_X DNA-binding protein smu 96.0 0.0045 1.5E-07 55.8 3.7 34 24-57 184-226 (646)
122 1via_A Shikimate kinase; struc 95.9 0.0029 1E-07 46.9 2.0 15 43-57 10-25 (175)
123 3trf_A Shikimate kinase, SK; a 95.9 0.0031 1.1E-07 46.9 2.0 15 43-57 11-26 (185)
124 1nks_A Adenylate kinase; therm 95.9 0.0029 1E-07 46.9 1.8 15 43-57 7-22 (194)
125 1zp6_A Hypothetical protein AT 95.8 0.003 1E-07 47.2 1.8 16 43-58 15-31 (191)
126 1kht_A Adenylate kinase; phosp 95.8 0.0034 1.2E-07 46.6 2.0 15 43-57 9-24 (192)
127 3vaa_A Shikimate kinase, SK; s 95.8 0.0034 1.2E-07 47.8 2.0 15 43-57 31-46 (199)
128 2rhm_A Putative kinase; P-loop 95.8 0.0032 1.1E-07 46.9 1.8 15 43-57 11-26 (193)
129 2r8r_A Sensor protein; KDPD, P 95.8 0.0071 2.4E-07 48.4 3.9 15 43-57 12-27 (228)
130 3lw7_A Adenylate kinase relate 95.7 0.0037 1.3E-07 45.2 1.8 18 43-60 7-25 (179)
131 1jr3_D DNA polymerase III, del 95.7 0.019 6.5E-07 47.1 6.4 87 43-142 24-144 (343)
132 2iyv_A Shikimate kinase, SK; t 95.7 0.0039 1.3E-07 46.4 2.0 15 43-57 8-23 (184)
133 1zuh_A Shikimate kinase; alpha 95.7 0.004 1.4E-07 45.8 2.0 19 43-61 13-33 (168)
134 1tev_A UMP-CMP kinase; ploop, 95.7 0.004 1.4E-07 46.2 2.0 15 43-57 9-24 (196)
135 3cm0_A Adenylate kinase; ATP-b 95.7 0.0043 1.5E-07 46.1 2.0 15 43-57 10-25 (186)
136 2jaq_A Deoxyguanosine kinase; 95.6 0.0044 1.5E-07 46.4 2.0 15 43-57 6-21 (205)
137 3fvq_A Fe(3+) IONS import ATP- 95.6 0.024 8.1E-07 48.1 6.7 15 43-57 36-51 (359)
138 2plr_A DTMP kinase, probable t 95.6 0.0045 1.5E-07 46.7 2.0 15 43-57 10-25 (213)
139 3iij_A Coilin-interacting nucl 95.6 0.0046 1.6E-07 46.0 2.0 15 43-57 17-32 (180)
140 1e6c_A Shikimate kinase; phosp 95.6 0.0048 1.6E-07 45.2 2.0 15 43-57 8-23 (173)
141 1y63_A LMAJ004144AAA protein; 95.6 0.0048 1.6E-07 46.4 2.0 22 43-64 16-40 (184)
142 3t61_A Gluconokinase; PSI-biol 95.5 0.0049 1.7E-07 46.8 2.0 15 43-57 24-39 (202)
143 3lda_A DNA repair protein RAD5 95.5 0.011 3.8E-07 50.7 4.4 46 69-116 274-326 (400)
144 3tui_C Methionine import ATP-b 95.5 0.023 7.9E-07 48.3 6.2 44 69-119 182-225 (366)
145 2c95_A Adenylate kinase 1; tra 95.5 0.0051 1.7E-07 45.9 1.8 15 43-57 15-30 (196)
146 3gfo_A Cobalt import ATP-bindi 95.5 0.021 7.2E-07 46.4 5.6 46 69-121 162-207 (275)
147 2pt5_A Shikimate kinase, SK; a 95.4 0.0057 2E-07 44.7 2.0 15 43-57 6-21 (168)
148 2bwj_A Adenylate kinase 5; pho 95.4 0.0052 1.8E-07 46.0 1.8 15 43-57 18-33 (199)
149 3uie_A Adenylyl-sulfate kinase 95.4 0.0056 1.9E-07 46.6 2.0 15 43-57 31-46 (200)
150 2cdn_A Adenylate kinase; phosp 95.4 0.0056 1.9E-07 46.4 2.0 15 43-57 26-41 (201)
151 2vli_A Antibiotic resistance p 95.4 0.0035 1.2E-07 46.4 0.8 19 43-61 11-31 (183)
152 1g5t_A COB(I)alamin adenosyltr 95.4 0.024 8.3E-07 44.2 5.6 43 69-118 121-163 (196)
153 2pbr_A DTMP kinase, thymidylat 95.4 0.0059 2E-07 45.3 2.0 15 43-57 6-21 (195)
154 1knq_A Gluconate kinase; ALFA/ 95.4 0.006 2E-07 45.0 2.0 15 43-57 14-29 (175)
155 1qf9_A UMP/CMP kinase, protein 95.4 0.0055 1.9E-07 45.4 1.8 15 43-57 12-27 (194)
156 3io5_A Recombination and repai 95.4 0.025 8.7E-07 47.6 6.0 50 68-120 111-173 (333)
157 4eun_A Thermoresistant glucoki 95.4 0.006 2.1E-07 46.4 2.0 15 43-57 35-50 (200)
158 1z47_A CYSA, putative ABC-tran 95.4 0.025 8.7E-07 47.8 5.9 15 43-57 47-62 (355)
159 2c9o_A RUVB-like 1; hexameric 95.3 0.044 1.5E-06 47.2 7.5 61 69-142 296-368 (456)
160 2wwf_A Thymidilate kinase, put 95.3 0.0058 2E-07 46.3 1.8 15 43-57 16-31 (212)
161 2yvu_A Probable adenylyl-sulfa 95.3 0.007 2.4E-07 45.3 2.0 15 43-57 19-34 (186)
162 2yyz_A Sugar ABC transporter, 95.2 0.026 8.9E-07 47.8 5.7 15 43-57 35-50 (359)
163 1aky_A Adenylate kinase; ATP:A 95.2 0.0071 2.4E-07 46.5 2.0 15 43-57 10-25 (220)
164 3dl0_A Adenylate kinase; phosp 95.2 0.0073 2.5E-07 46.2 2.0 15 43-57 6-21 (216)
165 3fb4_A Adenylate kinase; psych 95.2 0.0073 2.5E-07 46.1 2.0 15 43-57 6-21 (216)
166 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.0072 2.4E-07 48.2 2.0 15 43-57 10-25 (260)
167 2r6a_A DNAB helicase, replicat 95.2 0.035 1.2E-06 47.8 6.4 45 69-115 314-361 (454)
168 2bdt_A BH3686; alpha-beta prot 95.1 0.0081 2.8E-07 45.0 2.0 15 43-57 8-23 (189)
169 2z0h_A DTMP kinase, thymidylat 95.1 0.0082 2.8E-07 44.8 2.0 14 44-57 7-21 (197)
170 2ze6_A Isopentenyl transferase 95.1 0.008 2.7E-07 47.9 2.0 15 43-57 7-22 (253)
171 1zd8_A GTP:AMP phosphotransfer 95.1 0.0076 2.6E-07 46.7 1.8 15 43-57 13-28 (227)
172 1jjv_A Dephospho-COA kinase; P 95.1 0.0084 2.9E-07 45.5 2.0 18 43-60 8-26 (206)
173 1nn5_A Similar to deoxythymidy 95.1 0.0078 2.7E-07 45.6 1.8 15 43-57 15-30 (215)
174 2if2_A Dephospho-COA kinase; a 95.1 0.0078 2.7E-07 45.5 1.8 17 43-59 7-24 (204)
175 1cke_A CK, MSSA, protein (cyti 95.1 0.0084 2.9E-07 45.9 2.0 15 43-57 11-26 (227)
176 2it1_A 362AA long hypothetical 95.1 0.035 1.2E-06 47.0 5.9 15 43-57 35-50 (362)
177 1ak2_A Adenylate kinase isoenz 95.0 0.0086 2.9E-07 46.7 2.0 15 43-57 22-37 (233)
178 1ukz_A Uridylate kinase; trans 95.0 0.009 3.1E-07 45.1 2.0 19 43-61 21-41 (203)
179 2v54_A DTMP kinase, thymidylat 95.0 0.0091 3.1E-07 44.9 2.0 15 43-57 10-25 (204)
180 3be4_A Adenylate kinase; malar 94.9 0.0089 3.1E-07 46.1 1.8 15 43-57 11-26 (217)
181 3nh6_A ATP-binding cassette SU 94.9 0.042 1.5E-06 45.4 6.0 15 43-57 86-101 (306)
182 1zak_A Adenylate kinase; ATP:A 94.9 0.0091 3.1E-07 46.0 1.8 15 43-57 11-26 (222)
183 3crm_A TRNA delta(2)-isopenten 94.9 0.027 9.3E-07 47.1 4.8 15 43-57 11-26 (323)
184 2bbw_A Adenylate kinase 4, AK4 94.9 0.0098 3.4E-07 46.6 2.0 15 43-57 33-48 (246)
185 1e4v_A Adenylate kinase; trans 94.8 0.0099 3.4E-07 45.6 1.8 15 43-57 6-21 (214)
186 4f4c_A Multidrug resistance pr 94.8 0.028 9.7E-07 54.8 5.4 45 69-122 573-617 (1321)
187 2j41_A Guanylate kinase; GMP, 94.8 0.011 3.8E-07 44.4 2.0 15 43-57 12-27 (207)
188 2p5t_B PEZT; postsegregational 94.8 0.0079 2.7E-07 47.7 1.1 15 43-57 38-53 (253)
189 2pez_A Bifunctional 3'-phospho 94.7 0.012 4.1E-07 43.7 2.0 15 43-57 11-26 (179)
190 2qen_A Walker-type ATPase; unk 94.7 0.024 8.1E-07 45.7 3.9 33 25-57 11-52 (350)
191 3e1s_A Exodeoxyribonuclease V, 94.7 0.014 4.9E-07 52.1 2.6 31 27-57 187-225 (574)
192 1gvn_B Zeta; postsegregational 94.6 0.011 3.7E-07 48.2 1.7 15 43-57 39-54 (287)
193 2xb4_A Adenylate kinase; ATP-b 94.6 0.013 4.3E-07 45.5 2.0 15 43-57 6-21 (223)
194 1ye8_A Protein THEP1, hypothet 94.6 0.013 4.4E-07 44.4 2.0 15 43-57 6-21 (178)
195 1tf7_A KAIC; homohexamer, hexa 94.6 0.098 3.4E-06 45.8 7.9 51 69-122 139-189 (525)
196 1ltq_A Polynucleotide kinase; 94.6 0.013 4.3E-07 47.1 2.0 16 43-58 8-24 (301)
197 3tr0_A Guanylate kinase, GMP k 94.5 0.014 4.8E-07 43.9 2.0 15 43-57 13-28 (205)
198 1uf9_A TT1252 protein; P-loop, 94.5 0.013 4.5E-07 43.8 1.8 16 43-58 14-30 (203)
199 2qor_A Guanylate kinase; phosp 94.5 0.015 5E-07 44.4 2.0 15 43-57 18-33 (204)
200 3c8u_A Fructokinase; YP_612366 94.5 0.013 4.4E-07 44.9 1.7 15 43-57 28-43 (208)
201 2qt1_A Nicotinamide riboside k 94.5 0.014 4.7E-07 44.4 1.8 16 43-58 27-43 (207)
202 3cmw_A Protein RECA, recombina 94.5 0.038 1.3E-06 55.4 5.3 47 69-117 1510-1567(1706)
203 1m7g_A Adenylylsulfate kinase; 94.4 0.015 5.2E-07 44.5 2.0 15 43-57 31-46 (211)
204 3ake_A Cytidylate kinase; CMP 94.4 0.016 5.3E-07 43.6 2.0 15 43-57 8-23 (208)
205 2q6t_A DNAB replication FORK h 94.4 0.073 2.5E-06 45.7 6.4 44 69-114 311-359 (444)
206 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.016 5.5E-07 44.0 2.0 45 69-118 122-168 (235)
207 4a82_A Cystic fibrosis transme 94.4 0.033 1.1E-06 49.6 4.3 15 43-57 373-388 (578)
208 2cvh_A DNA repair and recombin 94.4 0.016 5.6E-07 43.8 2.0 15 43-57 26-41 (220)
209 4a74_A DNA repair and recombin 94.3 0.016 5.6E-07 44.1 1.8 15 43-57 31-46 (231)
210 3tlx_A Adenylate kinase 2; str 94.2 0.018 6.3E-07 45.4 2.0 15 43-57 35-50 (243)
211 1uj2_A Uridine-cytidine kinase 94.2 0.018 6.3E-07 45.4 2.0 20 43-62 28-49 (252)
212 1gtv_A TMK, thymidylate kinase 94.2 0.011 3.8E-07 44.8 0.6 14 44-57 7-21 (214)
213 2efe_B Small GTP-binding prote 94.1 0.13 4.3E-06 37.2 6.4 15 43-57 18-33 (181)
214 3qf4_B Uncharacterized ABC tra 94.1 0.055 1.9E-06 48.3 5.2 15 43-57 387-402 (598)
215 1n0w_A DNA repair protein RAD5 94.0 0.02 7E-07 43.9 2.0 15 43-57 30-45 (243)
216 1vht_A Dephospho-COA kinase; s 94.0 0.021 7.1E-07 43.7 2.0 18 43-60 10-28 (218)
217 2grj_A Dephospho-COA kinase; T 94.0 0.021 7.2E-07 43.9 2.0 15 44-58 19-34 (192)
218 1kgd_A CASK, peripheral plasma 94.0 0.022 7.5E-07 42.6 2.0 15 43-57 11-26 (180)
219 3sr0_A Adenylate kinase; phosp 93.9 0.021 7.2E-07 44.4 1.8 15 43-57 6-21 (206)
220 2gk6_A Regulator of nonsense t 93.9 0.024 8.3E-07 50.9 2.4 29 29-57 180-216 (624)
221 3asz_A Uridine kinase; cytidin 93.8 0.022 7.7E-07 43.1 1.8 16 43-58 12-28 (211)
222 3qf4_A ABC transporter, ATP-bi 93.7 0.034 1.2E-06 49.7 3.0 15 43-57 375-390 (587)
223 3nwj_A ATSK2; P loop, shikimat 93.5 0.028 9.7E-07 45.0 2.0 15 43-57 54-69 (250)
224 4e22_A Cytidylate kinase; P-lo 93.5 0.029 1E-06 44.4 2.0 15 43-57 33-48 (252)
225 1rz3_A Hypothetical protein rb 93.5 0.028 9.6E-07 42.7 1.8 15 43-57 28-43 (201)
226 3umf_A Adenylate kinase; rossm 93.4 0.029 1E-06 44.1 1.8 21 43-63 35-57 (217)
227 4f4c_A Multidrug resistance pr 93.4 0.072 2.5E-06 52.0 4.9 44 69-121 1236-1279(1321)
228 2f6r_A COA synthase, bifunctio 93.4 0.029 9.9E-07 45.3 1.8 17 43-59 81-98 (281)
229 3tau_A Guanylate kinase, GMP k 93.3 0.033 1.1E-06 42.7 2.0 15 43-57 14-29 (208)
230 1z6t_A APAF-1, apoptotic prote 93.3 0.046 1.6E-06 47.9 3.1 36 22-57 120-168 (591)
231 1cr0_A DNA primase/helicase; R 93.3 0.031 1E-06 44.9 1.8 15 43-57 41-56 (296)
232 3r20_A Cytidylate kinase; stru 93.2 0.034 1.1E-06 44.3 2.0 15 43-57 15-30 (233)
233 2bcg_Y Protein YP2, GTP-bindin 93.2 0.29 9.9E-06 36.4 7.2 15 43-57 14-29 (206)
234 1znw_A Guanylate kinase, GMP k 93.2 0.036 1.2E-06 42.3 2.0 15 43-57 26-41 (207)
235 2dr3_A UPF0273 protein PH0284; 93.2 0.033 1.1E-06 42.7 1.8 15 43-57 29-44 (247)
236 3b60_A Lipid A export ATP-bind 93.1 0.11 3.8E-06 46.1 5.4 15 43-57 375-390 (582)
237 2wjy_A Regulator of nonsense t 93.0 0.04 1.4E-06 51.3 2.4 29 29-57 356-392 (800)
238 3a00_A Guanylate kinase, GMP k 93.0 0.04 1.4E-06 41.3 2.0 15 43-57 7-22 (186)
239 4dkx_A RAS-related protein RAB 92.9 0.12 4E-06 40.2 4.7 15 43-57 19-34 (216)
240 2ga8_A Hypothetical 39.9 kDa p 92.9 0.039 1.3E-06 46.9 2.0 15 43-57 30-45 (359)
241 4eaq_A DTMP kinase, thymidylat 92.9 0.042 1.4E-06 43.1 2.0 14 44-57 33-47 (229)
242 1q3t_A Cytidylate kinase; nucl 92.8 0.045 1.5E-06 42.6 2.0 15 43-57 22-37 (236)
243 3zvl_A Bifunctional polynucleo 92.8 0.038 1.3E-06 47.2 1.8 15 43-57 264-279 (416)
244 3tkl_A RAS-related protein RAB 92.7 0.24 8.3E-06 36.2 6.0 15 43-57 22-37 (196)
245 2h92_A Cytidylate kinase; ross 92.6 0.049 1.7E-06 41.5 2.0 15 43-57 9-24 (219)
246 2jeo_A Uridine-cytidine kinase 92.4 0.051 1.7E-06 42.6 2.0 15 44-58 32-47 (245)
247 2xzl_A ATP-dependent helicase 92.4 0.059 2E-06 50.1 2.6 29 29-57 360-396 (802)
248 2axn_A 6-phosphofructo-2-kinas 92.4 0.049 1.7E-06 48.1 2.0 15 43-57 41-56 (520)
249 3ozx_A RNAse L inhibitor; ATP 92.3 0.25 8.7E-06 43.7 6.5 15 43-57 300-315 (538)
250 2ocp_A DGK, deoxyguanosine kin 92.3 0.05 1.7E-06 42.4 1.8 15 43-57 8-23 (241)
251 2z43_A DNA repair and recombin 92.3 0.049 1.7E-06 44.8 1.8 44 69-114 204-254 (324)
252 3aez_A Pantothenate kinase; tr 92.2 0.054 1.8E-06 44.7 2.0 15 43-57 96-111 (312)
253 3gmt_A Adenylate kinase; ssgci 92.2 0.057 1.9E-06 43.0 2.0 15 43-57 14-29 (230)
254 2i1q_A DNA repair and recombin 92.2 0.053 1.8E-06 44.2 1.8 15 43-57 104-119 (322)
255 2a5y_B CED-4; apoptosis; HET: 92.1 0.076 2.6E-06 46.7 2.9 15 43-57 158-173 (549)
256 1odf_A YGR205W, hypothetical 3 92.1 0.057 2E-06 44.1 2.0 15 43-57 37-52 (290)
257 2zej_A Dardarin, leucine-rich 92.1 0.057 1.9E-06 39.9 1.8 15 43-57 8-23 (184)
258 1z6g_A Guanylate kinase; struc 92.1 0.06 2.1E-06 41.6 2.0 16 43-58 29-45 (218)
259 1v5w_A DMC1, meiotic recombina 92.1 0.058 2E-06 44.8 2.0 15 43-57 128-143 (343)
260 2dyk_A GTP-binding protein; GT 92.0 0.065 2.2E-06 37.9 2.0 15 43-57 7-22 (161)
261 3tqc_A Pantothenate kinase; bi 92.0 0.06 2E-06 44.9 2.0 14 44-57 99-113 (321)
262 1p5z_B DCK, deoxycytidine kina 92.0 0.033 1.1E-06 44.1 0.4 15 43-57 30-45 (263)
263 1bif_A 6-phosphofructo-2-kinas 92.0 0.058 2E-06 46.6 2.0 15 43-57 45-60 (469)
264 1pzn_A RAD51, DNA repair and r 91.9 0.057 2E-06 45.1 1.8 15 43-57 137-152 (349)
265 2wji_A Ferrous iron transport 91.9 0.067 2.3E-06 38.7 2.0 15 43-57 9-24 (165)
266 2ce2_X GTPase HRAS; signaling 91.9 0.064 2.2E-06 37.8 1.8 15 43-57 9-24 (166)
267 3lnc_A Guanylate kinase, GMP k 91.9 0.041 1.4E-06 42.6 0.8 17 43-59 33-51 (231)
268 1lvg_A Guanylate kinase, GMP k 91.8 0.068 2.3E-06 40.6 2.0 15 43-57 10-25 (198)
269 2nzj_A GTP-binding protein REM 91.8 0.071 2.4E-06 38.3 2.0 15 43-57 10-25 (175)
270 1z2a_A RAS-related protein RAB 91.8 0.071 2.4E-06 37.9 2.0 15 43-57 11-26 (168)
271 3bh0_A DNAB-like replicative h 91.8 0.066 2.3E-06 43.9 2.0 15 43-57 74-89 (315)
272 2i3b_A HCR-ntpase, human cance 91.7 0.071 2.4E-06 40.7 2.0 15 43-57 7-22 (189)
273 1oix_A RAS-related protein RAB 91.7 0.068 2.3E-06 39.9 1.8 15 43-57 35-50 (191)
274 2f9l_A RAB11B, member RAS onco 91.6 0.074 2.5E-06 39.7 2.0 15 43-57 11-26 (199)
275 1u8z_A RAS-related protein RAL 91.6 0.077 2.6E-06 37.5 2.0 15 43-57 10-25 (168)
276 1s2m_A Putative ATP-dependent 91.6 0.84 2.9E-05 37.3 8.6 36 19-54 17-76 (400)
277 2iut_A DNA translocase FTSK; n 91.6 0.21 7.2E-06 44.9 5.2 66 70-142 345-412 (574)
278 3q85_A GTP-binding protein REM 91.5 0.08 2.7E-06 37.8 2.0 15 43-57 8-23 (169)
279 1sq5_A Pantothenate kinase; P- 91.5 0.069 2.4E-06 43.6 1.8 15 43-57 86-101 (308)
280 1g8f_A Sulfate adenylyltransfe 91.5 0.072 2.5E-06 47.2 2.0 14 44-57 402-416 (511)
281 1lw7_A Transcriptional regulat 91.5 0.072 2.4E-06 44.4 1.9 15 43-57 176-191 (365)
282 1kao_A RAP2A; GTP-binding prot 91.4 0.082 2.8E-06 37.3 2.0 15 43-57 9-24 (167)
283 1c1y_A RAS-related protein RAP 91.4 0.084 2.9E-06 37.4 2.0 15 43-57 9-24 (167)
284 3g5u_A MCG1178, multidrug resi 91.4 0.12 3.9E-06 50.4 3.5 15 43-57 422-437 (1284)
285 2erx_A GTP-binding protein DI- 91.3 0.086 3E-06 37.5 2.0 15 43-57 9-24 (172)
286 1yrb_A ATP(GTP)binding protein 91.2 0.083 2.9E-06 41.1 2.0 15 43-57 20-35 (262)
287 3thx_B DNA mismatch repair pro 91.2 0.29 1E-05 46.2 6.0 15 43-57 679-694 (918)
288 1w36_D RECD, exodeoxyribonucle 91.2 0.078 2.7E-06 47.5 2.0 15 43-57 170-185 (608)
289 3q72_A GTP-binding protein RAD 91.2 0.079 2.7E-06 37.7 1.7 15 43-57 8-23 (166)
290 3thx_A DNA mismatch repair pro 91.1 0.44 1.5E-05 45.1 7.1 15 43-57 668-683 (934)
291 2wjg_A FEOB, ferrous iron tran 91.1 0.093 3.2E-06 38.3 2.0 15 43-57 13-28 (188)
292 1z08_A RAS-related protein RAB 91.0 0.096 3.3E-06 37.3 2.0 15 43-57 12-27 (170)
293 1r2q_A RAS-related protein RAB 91.0 0.096 3.3E-06 37.2 2.0 15 43-57 12-27 (170)
294 1z0j_A RAB-22, RAS-related pro 91.0 0.097 3.3E-06 37.2 2.0 15 43-57 12-27 (170)
295 1ek0_A Protein (GTP-binding pr 91.0 0.097 3.3E-06 37.1 2.0 15 43-57 9-24 (170)
296 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.098 3.3E-06 37.6 2.0 15 43-57 13-28 (177)
297 2gj8_A MNME, tRNA modification 90.9 0.09 3.1E-06 38.5 1.8 15 43-57 10-25 (172)
298 2hxs_A RAB-26, RAS-related pro 90.9 0.099 3.4E-06 37.6 2.0 15 43-57 12-27 (178)
299 2wsm_A Hydrogenase expression/ 90.9 0.091 3.1E-06 39.8 1.8 15 43-57 36-51 (221)
300 1r8s_A ADP-ribosylation factor 90.9 0.1 3.5E-06 37.1 2.0 15 43-57 6-21 (164)
301 4i1u_A Dephospho-COA kinase; s 90.8 0.086 2.9E-06 41.4 1.7 19 44-62 16-35 (210)
302 3con_A GTPase NRAS; structural 90.8 0.1 3.4E-06 38.3 2.0 15 43-57 27-42 (190)
303 1htw_A HI0065; nucleotide-bind 90.8 0.1 3.5E-06 38.8 2.0 15 43-57 39-54 (158)
304 2ew1_A RAS-related protein RAB 90.8 0.03 1E-06 42.5 -1.0 15 43-57 32-47 (201)
305 1xjc_A MOBB protein homolog; s 90.7 0.1 3.6E-06 39.5 2.0 14 44-57 11-25 (169)
306 3eph_A TRNA isopentenyltransfe 90.7 0.27 9.2E-06 42.4 4.8 15 43-57 8-23 (409)
307 3tw8_B RAS-related protein RAB 90.7 0.09 3.1E-06 37.8 1.6 15 43-57 15-30 (181)
308 1g16_A RAS-related protein SEC 90.7 0.1 3.4E-06 37.2 1.8 15 43-57 9-24 (170)
309 2hf9_A Probable hydrogenase ni 90.6 0.098 3.3E-06 39.7 1.8 15 43-57 44-59 (226)
310 2j9r_A Thymidine kinase; TK1, 90.6 0.27 9.2E-06 38.7 4.3 15 43-57 34-49 (214)
311 1ky3_A GTP-binding protein YPT 90.5 0.11 3.8E-06 37.3 2.0 15 43-57 14-29 (182)
312 3bc1_A RAS-related protein RAB 90.5 0.11 3.9E-06 37.7 2.0 15 43-57 17-32 (195)
313 2cxx_A Probable GTP-binding pr 90.5 0.11 3.6E-06 37.9 1.8 15 43-57 7-22 (190)
314 2v9p_A Replication protein E1; 90.4 0.11 3.7E-06 43.0 2.0 15 43-57 132-147 (305)
315 2lkc_A Translation initiation 90.4 0.12 4E-06 37.3 2.0 15 43-57 14-29 (178)
316 2pcj_A ABC transporter, lipopr 90.4 0.095 3.3E-06 40.9 1.6 15 43-57 36-51 (224)
317 2y8e_A RAB-protein 6, GH09086P 90.4 0.11 3.7E-06 37.3 1.8 15 43-57 20-35 (179)
318 2ged_A SR-beta, signal recogni 90.4 0.12 4E-06 38.0 2.0 15 43-57 54-69 (193)
319 3g5u_A MCG1178, multidrug resi 90.4 0.31 1.1E-05 47.4 5.4 15 43-57 1065-1080(1284)
320 2fn4_A P23, RAS-related protei 90.4 0.11 3.7E-06 37.4 1.8 15 43-57 15-30 (181)
321 1z0f_A RAB14, member RAS oncog 90.3 0.12 4.1E-06 37.1 2.0 15 43-57 21-36 (179)
322 3ney_A 55 kDa erythrocyte memb 90.2 0.12 4E-06 40.1 2.0 15 43-57 25-40 (197)
323 2onk_A Molybdate/tungstate ABC 90.2 0.12 4E-06 41.0 2.0 15 43-57 30-45 (240)
324 2orw_A Thymidine kinase; TMTK, 90.2 0.11 3.9E-06 39.2 1.8 15 43-57 9-24 (184)
325 1upt_A ARL1, ADP-ribosylation 90.2 0.13 4.3E-06 36.7 2.0 15 43-57 13-28 (171)
326 3t1o_A Gliding protein MGLA; G 90.1 0.12 4.1E-06 37.7 1.8 15 43-57 20-35 (198)
327 1np6_A Molybdopterin-guanine d 90.1 0.13 4.3E-06 38.9 2.0 15 43-57 12-27 (174)
328 3tif_A Uncharacterized ABC tra 90.0 0.11 3.9E-06 40.8 1.8 14 44-57 38-52 (235)
329 4dsu_A GTPase KRAS, isoform 2B 90.0 0.13 4.4E-06 37.3 2.0 15 43-57 10-25 (189)
330 1nrj_B SR-beta, signal recogni 90.0 0.13 4.3E-06 38.8 2.0 15 43-57 18-33 (218)
331 3clv_A RAB5 protein, putative; 90.0 0.13 4.4E-06 37.5 2.0 15 43-57 13-28 (208)
332 1s96_A Guanylate kinase, GMP k 90.0 0.13 4.3E-06 40.2 2.0 15 43-57 22-37 (219)
333 1m7b_A RND3/RHOE small GTP-bin 90.0 0.12 4.1E-06 37.9 1.8 15 43-57 13-28 (184)
334 4edh_A DTMP kinase, thymidylat 90.0 0.13 4.4E-06 40.1 2.0 14 44-57 13-27 (213)
335 3cr8_A Sulfate adenylyltranfer 89.9 0.088 3E-06 47.0 1.2 15 43-57 375-390 (552)
336 1svi_A GTP-binding protein YSX 89.9 0.12 4.2E-06 37.9 1.8 15 43-57 29-44 (195)
337 2cbz_A Multidrug resistance-as 89.9 0.12 4.1E-06 40.7 1.8 15 43-57 37-52 (237)
338 2a9k_A RAS-related protein RAL 89.8 0.14 4.7E-06 37.0 2.0 15 43-57 24-39 (187)
339 3k53_A Ferrous iron transport 89.8 0.12 4.1E-06 41.0 1.8 15 43-57 9-24 (271)
340 1mh1_A RAC1; GTP-binding, GTPa 89.8 0.14 4.7E-06 37.1 2.0 15 43-57 11-26 (186)
341 2oil_A CATX-8, RAS-related pro 89.8 0.14 4.7E-06 37.7 2.0 15 43-57 31-46 (193)
342 3kkq_A RAS-related protein M-R 89.7 0.14 4.8E-06 37.2 2.0 15 43-57 24-39 (183)
343 1b0u_A Histidine permease; ABC 89.7 0.12 4.2E-06 41.3 1.8 15 43-57 38-53 (262)
344 2iwr_A Centaurin gamma 1; ANK 89.7 0.11 3.7E-06 37.6 1.4 15 43-57 13-28 (178)
345 1a7j_A Phosphoribulokinase; tr 89.7 0.06 2.1E-06 43.8 -0.1 14 44-57 12-26 (290)
346 3b85_A Phosphate starvation-in 89.7 0.098 3.4E-06 40.6 1.1 15 43-57 28-43 (208)
347 1x6v_B Bifunctional 3'-phospho 89.7 0.13 4.3E-06 46.8 2.0 37 21-57 26-73 (630)
348 3pqc_A Probable GTP-binding pr 89.7 0.13 4.6E-06 37.4 1.8 15 43-57 29-44 (195)
349 1pui_A ENGB, probable GTP-bind 89.6 0.06 2.1E-06 40.3 -0.2 15 43-57 32-47 (210)
350 2g6b_A RAS-related protein RAB 89.6 0.15 5E-06 36.8 2.0 15 43-57 16-31 (180)
351 3kjh_A CO dehydrogenase/acetyl 89.6 0.17 5.8E-06 38.7 2.4 35 106-142 131-165 (254)
352 1m2o_B GTP-binding protein SAR 89.6 0.14 4.7E-06 38.1 1.8 15 43-57 29-44 (190)
353 1rj9_A FTSY, signal recognitio 89.5 0.14 4.7E-06 42.1 2.0 15 43-57 108-123 (304)
354 3bwd_D RAC-like GTP-binding pr 89.5 0.15 5.2E-06 36.8 2.0 15 43-57 14-29 (182)
355 2f1r_A Molybdopterin-guanine d 89.5 0.08 2.7E-06 39.9 0.4 15 43-57 8-23 (171)
356 1m8p_A Sulfate adenylyltransfe 89.4 0.14 4.6E-06 45.9 2.0 14 44-57 403-417 (573)
357 2bme_A RAB4A, RAS-related prot 89.4 0.14 4.9E-06 37.1 1.8 15 43-57 16-31 (186)
358 3fdi_A Uncharacterized protein 89.4 0.14 4.8E-06 39.3 1.8 15 43-57 12-27 (201)
359 1vma_A Cell division protein F 89.4 0.15 5E-06 42.1 2.0 15 43-57 110-125 (306)
360 3t5g_A GTP-binding protein RHE 89.3 0.15 5E-06 37.0 1.8 15 43-57 12-27 (181)
361 2qm8_A GTPase/ATPase; G protei 89.3 0.15 5.1E-06 42.4 2.0 15 43-57 61-76 (337)
362 1ksh_A ARF-like protein 2; sma 89.3 0.15 5E-06 37.2 1.8 15 43-57 24-39 (186)
363 2d2e_A SUFC protein; ABC-ATPas 89.2 0.15 5.3E-06 40.4 2.0 16 43-58 35-51 (250)
364 2atv_A RERG, RAS-like estrogen 89.2 0.16 5.5E-06 37.6 2.0 15 43-57 34-49 (196)
365 1g29_1 MALK, maltose transport 89.2 0.15 5.1E-06 43.2 2.0 15 43-57 35-50 (372)
366 3p32_A Probable GTPase RV1496/ 89.2 0.15 5.1E-06 42.4 2.0 15 43-57 85-100 (355)
367 1v43_A Sugar-binding transport 89.2 0.15 5.1E-06 43.3 2.0 15 43-57 43-58 (372)
368 1mv5_A LMRA, multidrug resista 89.1 0.15 5E-06 40.3 1.8 15 43-57 34-49 (243)
369 2ff7_A Alpha-hemolysin translo 89.1 0.15 5E-06 40.5 1.8 15 43-57 41-56 (247)
370 4g1u_C Hemin import ATP-bindin 89.1 0.15 5E-06 41.1 1.8 15 43-57 43-58 (266)
371 3c5c_A RAS-like protein 12; GD 89.1 0.17 5.7E-06 37.4 2.0 15 43-57 27-42 (187)
372 1g6h_A High-affinity branched- 89.1 0.15 5E-06 40.7 1.8 15 43-57 39-54 (257)
373 2gf9_A RAS-related protein RAB 89.1 0.17 5.7E-06 37.2 2.0 15 43-57 28-43 (189)
374 3ihw_A Centg3; RAS, centaurin, 89.1 0.17 5.8E-06 37.4 2.0 15 43-57 26-41 (184)
375 3lxw_A GTPase IMAP family memb 89.0 0.27 9.2E-06 38.6 3.3 15 43-57 27-42 (247)
376 3sop_A Neuronal-specific septi 89.0 0.15 5.2E-06 41.0 1.8 15 43-57 8-23 (270)
377 3d3q_A TRNA delta(2)-isopenten 89.0 0.16 5.5E-06 42.7 2.0 15 43-57 13-28 (340)
378 3reg_A RHO-like small GTPase; 89.0 0.17 5.9E-06 37.3 2.0 15 43-57 29-44 (194)
379 1ewq_A DNA mismatch repair pro 89.0 0.4 1.4E-05 44.3 4.8 15 43-57 582-597 (765)
380 3pey_A ATP-dependent RNA helic 88.9 1.6 5.4E-05 35.2 8.0 14 69-82 146-159 (395)
381 3oes_A GTPase rhebl1; small GT 88.9 0.16 5.5E-06 37.8 1.8 15 43-57 30-45 (201)
382 1c9k_A COBU, adenosylcobinamid 88.9 0.16 5.5E-06 38.9 1.8 15 43-57 5-20 (180)
383 1vg8_A RAS-related protein RAB 88.9 0.18 6E-06 37.4 2.0 15 43-57 14-29 (207)
384 1p9r_A General secretion pathw 88.9 0.26 8.9E-06 42.4 3.3 36 22-57 143-188 (418)
385 1fzq_A ADP-ribosylation factor 88.9 0.14 4.8E-06 37.6 1.4 15 43-57 22-37 (181)
386 2bov_A RAla, RAS-related prote 88.9 0.18 6E-06 37.3 2.0 15 43-57 20-35 (206)
387 2cjw_A GTP-binding protein GEM 88.9 0.18 6E-06 37.7 2.0 15 43-57 12-27 (192)
388 1f6b_A SAR1; gtpases, N-termin 88.9 0.14 4.8E-06 38.3 1.4 15 43-57 31-46 (198)
389 3ld9_A DTMP kinase, thymidylat 88.8 0.17 5.9E-06 39.8 2.0 14 44-57 28-42 (223)
390 1z06_A RAS-related protein RAB 88.8 0.18 6.2E-06 37.0 2.0 15 43-57 26-41 (189)
391 3d31_A Sulfate/molybdate ABC t 88.8 0.13 4.4E-06 43.2 1.3 15 43-57 32-47 (348)
392 4a1f_A DNAB helicase, replicat 88.8 0.16 5.4E-06 42.6 1.8 15 43-57 52-67 (338)
393 1zbd_A Rabphilin-3A; G protein 88.8 0.18 6.1E-06 37.4 2.0 15 43-57 14-29 (203)
394 1wb9_A DNA mismatch repair pro 88.8 0.67 2.3E-05 43.1 6.2 15 43-57 613-628 (800)
395 3hdt_A Putative kinase; struct 88.7 0.16 5.6E-06 39.8 1.8 15 43-57 20-35 (223)
396 1zd9_A ADP-ribosylation factor 88.7 0.19 6.3E-06 37.0 2.0 15 43-57 28-43 (188)
397 2olj_A Amino acid ABC transpor 88.7 0.16 5.6E-06 40.8 1.8 15 43-57 56-71 (263)
398 3dz8_A RAS-related protein RAB 88.7 0.17 5.9E-06 37.2 1.8 15 43-57 29-44 (191)
399 1ji0_A ABC transporter; ATP bi 88.6 0.17 5.7E-06 39.9 1.8 15 43-57 38-53 (240)
400 3lv8_A DTMP kinase, thymidylat 88.6 0.17 5.9E-06 40.1 1.8 14 44-57 34-48 (236)
401 1x3s_A RAS-related protein RAB 88.5 0.19 6.6E-06 36.6 2.0 15 43-57 21-36 (195)
402 2pze_A Cystic fibrosis transme 88.5 0.17 5.8E-06 39.6 1.8 15 43-57 40-55 (229)
403 1zj6_A ADP-ribosylation factor 88.5 0.18 6.1E-06 36.9 1.8 15 43-57 22-37 (187)
404 3a8t_A Adenylate isopentenyltr 88.5 0.22 7.6E-06 41.8 2.6 15 43-57 46-61 (339)
405 2zu0_C Probable ATP-dependent 88.5 0.18 6.3E-06 40.4 2.0 16 43-58 52-68 (267)
406 2h17_A ADP-ribosylation factor 88.5 0.18 6.2E-06 36.8 1.8 15 43-57 27-42 (181)
407 2fg5_A RAB-22B, RAS-related pr 88.4 0.18 6.3E-06 37.2 1.8 15 43-57 29-44 (192)
408 3cbq_A GTP-binding protein REM 88.4 0.15 5.1E-06 38.1 1.3 15 43-57 29-44 (195)
409 3bgw_A DNAB-like replicative h 88.4 0.17 5.8E-06 43.7 1.8 15 43-57 203-218 (444)
410 3v9p_A DTMP kinase, thymidylat 88.4 0.14 4.8E-06 40.4 1.2 15 43-57 31-46 (227)
411 1sgw_A Putative ABC transporte 88.4 0.18 6.1E-06 39.3 1.8 15 43-57 41-56 (214)
412 2ixe_A Antigen peptide transpo 88.4 0.17 6E-06 40.7 1.8 15 43-57 51-66 (271)
413 1moz_A ARL1, ADP-ribosylation 88.3 0.14 4.9E-06 37.0 1.1 15 43-57 24-39 (183)
414 2ghi_A Transport protein; mult 88.3 0.18 6E-06 40.4 1.8 15 43-57 52-67 (260)
415 3kta_A Chromosome segregation 88.3 0.19 6.4E-06 37.0 1.8 15 43-57 32-47 (182)
416 2p5s_A RAS and EF-hand domain 88.3 0.2 6.9E-06 37.2 2.0 15 43-57 34-49 (199)
417 2px0_A Flagellar biosynthesis 88.3 0.18 6.1E-06 41.2 1.8 15 43-57 111-126 (296)
418 2eyu_A Twitching motility prot 88.3 0.19 6.6E-06 40.2 1.9 15 43-57 31-46 (261)
419 2fh5_B SR-beta, signal recogni 88.3 0.2 6.9E-06 37.5 2.0 15 43-57 13-28 (214)
420 2qmh_A HPR kinase/phosphorylas 88.3 0.18 6.1E-06 39.6 1.7 15 43-57 40-55 (205)
421 1w4r_A Thymidine kinase; type 88.2 1.2 4.1E-05 34.4 6.4 15 43-57 26-42 (195)
422 2a5j_A RAS-related protein RAB 88.2 0.21 7.1E-06 36.8 2.0 15 43-57 27-42 (191)
423 2gf0_A GTP-binding protein DI- 88.2 0.19 6.6E-06 36.8 1.8 15 43-57 14-29 (199)
424 3tmk_A Thymidylate kinase; pho 88.2 0.19 6.4E-06 39.4 1.8 14 44-57 12-26 (216)
425 3e70_C DPA, signal recognition 88.1 0.2 6.7E-06 41.7 2.0 15 43-57 135-150 (328)
426 2o8b_B DNA mismatch repair pro 88.1 0.62 2.1E-05 44.5 5.6 15 43-57 795-810 (1022)
427 3b9q_A Chloroplast SRP recepto 88.1 0.2 6.9E-06 41.0 2.0 15 43-57 106-121 (302)
428 2vp4_A Deoxynucleoside kinase; 88.0 0.14 4.6E-06 39.7 0.9 16 44-59 27-43 (230)
429 1u0l_A Probable GTPase ENGC; p 88.0 0.18 6E-06 41.0 1.6 15 43-57 175-190 (301)
430 3cph_A RAS-related protein SEC 88.0 0.22 7.4E-06 37.1 2.0 15 43-57 26-41 (213)
431 2yv5_A YJEQ protein; hydrolase 88.0 0.2 7E-06 40.8 2.0 15 43-57 171-186 (302)
432 3gd7_A Fusion complex of cysti 87.9 0.19 6.5E-06 42.9 1.8 14 44-57 54-68 (390)
433 2ck3_D ATP synthase subunit be 87.9 1.1 3.7E-05 39.5 6.6 15 43-57 159-174 (482)
434 4bas_A ADP-ribosylation factor 87.9 0.21 7.2E-06 36.6 1.8 15 43-57 23-38 (199)
435 3a1s_A Iron(II) transport prot 87.9 0.21 7.3E-06 39.6 2.0 15 43-57 11-26 (258)
436 2ihy_A ABC transporter, ATP-bi 87.9 0.19 6.7E-06 40.6 1.8 15 43-57 53-68 (279)
437 2yz2_A Putative ABC transporte 87.9 0.2 6.7E-06 40.2 1.8 15 43-57 39-54 (266)
438 2q3h_A RAS homolog gene family 87.8 0.23 7.7E-06 36.8 2.0 15 43-57 26-41 (201)
439 1gwn_A RHO-related GTP-binding 87.8 0.21 7.1E-06 37.8 1.8 15 43-57 34-49 (205)
440 1ex7_A Guanylate kinase; subst 87.8 0.23 7.7E-06 38.0 2.0 15 43-57 7-22 (186)
441 3lxx_A GTPase IMAP family memb 87.8 0.22 7.6E-06 38.4 2.0 15 43-57 35-50 (239)
442 3b1v_A Ferrous iron uptake tra 87.7 0.22 7.5E-06 40.1 2.0 15 43-57 9-24 (272)
443 2qi9_C Vitamin B12 import ATP- 87.7 0.2 7E-06 39.9 1.8 15 43-57 32-47 (249)
444 3lfu_A DNA helicase II; SF1 he 87.7 0.33 1.1E-05 42.9 3.3 27 29-55 9-41 (647)
445 3iby_A Ferrous iron transport 87.7 0.21 7.1E-06 39.7 1.8 15 43-57 7-22 (256)
446 2pjz_A Hypothetical protein ST 87.7 0.2 7E-06 40.2 1.8 15 43-57 36-51 (263)
447 1vpl_A ABC transporter, ATP-bi 87.7 0.2 7E-06 40.0 1.8 15 43-57 47-62 (256)
448 2il1_A RAB12; G-protein, GDP, 87.6 0.22 7.7E-06 36.8 1.8 15 43-57 32-47 (192)
449 4ag6_A VIRB4 ATPase, type IV s 87.6 0.32 1.1E-05 40.6 2.9 15 43-57 41-56 (392)
450 1oxx_K GLCV, glucose, ABC tran 87.5 0.13 4.6E-06 43.2 0.6 15 43-57 37-52 (353)
451 2fu5_C RAS-related protein RAB 87.5 0.13 4.5E-06 37.3 0.5 15 43-57 14-29 (183)
452 4hlc_A DTMP kinase, thymidylat 87.5 0.24 8.2E-06 38.2 2.0 14 44-57 9-23 (205)
453 4tmk_A Protein (thymidylate ki 87.5 0.22 7.6E-06 38.7 1.8 14 44-57 10-24 (213)
454 2atx_A Small GTP binding prote 87.5 0.23 7.8E-06 36.5 1.8 15 43-57 24-39 (194)
455 2nq2_C Hypothetical ABC transp 87.4 0.22 7.4E-06 39.7 1.8 15 43-57 37-52 (253)
456 2j1l_A RHO-related GTP-binding 87.4 0.23 7.8E-06 37.6 1.8 15 43-57 40-55 (214)
457 1tf7_A KAIC; homohexamer, hexa 87.4 0.21 7.2E-06 43.7 1.8 15 43-57 287-302 (525)
458 2j0v_A RAC-like GTP-binding pr 87.4 0.23 7.8E-06 37.1 1.8 15 43-57 15-30 (212)
459 2www_A Methylmalonic aciduria 87.4 0.23 7.9E-06 41.3 2.0 15 43-57 80-95 (349)
460 2o52_A RAS-related protein RAB 87.4 0.23 7.9E-06 37.0 1.8 15 43-57 31-46 (200)
461 2gco_A H9, RHO-related GTP-bin 87.3 0.23 7.9E-06 37.0 1.8 15 43-57 31-46 (201)
462 2fv8_A H6, RHO-related GTP-bin 87.3 0.23 8E-06 37.2 1.8 15 43-57 31-46 (207)
463 1sky_E F1-ATPase, F1-ATP synth 87.3 0.23 8E-06 43.6 2.0 15 43-57 157-172 (473)
464 2h57_A ADP-ribosylation factor 87.3 0.16 5.6E-06 37.3 0.9 15 43-57 27-42 (190)
465 2gks_A Bifunctional SAT/APS ki 87.3 0.23 7.8E-06 44.1 2.0 15 43-57 378-393 (546)
466 2f7s_A C25KG, RAS-related prot 87.3 0.25 8.7E-06 37.0 2.0 15 43-57 31-46 (217)
467 2b8t_A Thymidine kinase; deoxy 87.2 0.25 8.6E-06 38.9 2.0 15 43-57 18-33 (223)
468 2b6h_A ADP-ribosylation factor 87.1 0.23 7.9E-06 36.9 1.7 15 43-57 35-50 (192)
469 2rcn_A Probable GTPase ENGC; Y 87.1 0.25 8.4E-06 41.8 2.0 15 43-57 221-236 (358)
470 2qu8_A Putative nucleolar GTP- 87.0 0.24 8.2E-06 37.8 1.8 15 43-57 35-50 (228)
471 1ega_A Protein (GTP-binding pr 86.9 0.26 8.9E-06 40.0 2.0 15 43-57 14-29 (301)
472 2hup_A RAS-related protein RAB 86.8 0.26 8.8E-06 36.9 1.8 15 43-57 35-50 (201)
473 2c61_A A-type ATP synthase non 86.8 1.1 3.7E-05 39.3 6.0 15 43-57 158-173 (469)
474 4gzl_A RAS-related C3 botulinu 86.7 0.26 9E-06 36.9 1.8 15 43-57 36-51 (204)
475 3l0i_B RAS-related protein RAB 86.7 0.26 8.9E-06 36.6 1.7 15 43-57 39-54 (199)
476 2x77_A ADP-ribosylation factor 86.6 0.21 7E-06 36.6 1.1 15 43-57 28-43 (189)
477 1fx0_B ATP synthase beta chain 86.5 1.2 4E-05 39.4 6.0 15 43-57 171-186 (498)
478 2p67_A LAO/AO transport system 86.4 0.26 9.1E-06 40.7 1.8 15 43-57 62-77 (341)
479 3kl4_A SRP54, signal recogniti 86.4 0.28 9.5E-06 42.5 2.0 15 43-57 103-118 (433)
480 2ewv_A Twitching motility prot 86.3 0.29 9.7E-06 41.2 2.0 36 22-57 116-157 (372)
481 3end_A Light-independent proto 86.3 0.39 1.3E-05 38.5 2.7 15 43-57 47-62 (307)
482 3llu_A RAS-related GTP-binding 86.2 0.28 9.5E-06 36.4 1.7 15 43-57 26-41 (196)
483 3e2i_A Thymidine kinase; Zn-bi 86.2 0.82 2.8E-05 36.1 4.4 14 43-56 34-49 (219)
484 2g3y_A GTP-binding protein GEM 86.1 0.31 1.1E-05 37.5 2.0 15 43-57 43-58 (211)
485 3k9g_A PF-32 protein; ssgcid, 86.1 0.47 1.6E-05 37.1 3.0 14 44-57 35-49 (267)
486 1cp2_A CP2, nitrogenase iron p 86.1 0.42 1.4E-05 37.3 2.8 14 44-57 8-22 (269)
487 1ls1_A Signal recognition part 86.1 0.3 1E-05 39.7 2.0 15 43-57 104-119 (295)
488 1q57_A DNA primase/helicase; d 86.1 0.22 7.5E-06 43.2 1.2 15 43-57 248-263 (503)
489 2qnr_A Septin-2, protein NEDD5 86.0 0.29 9.8E-06 39.8 1.8 15 43-57 24-39 (301)
490 2v3c_C SRP54, signal recogniti 86.0 0.22 7.5E-06 43.0 1.1 15 43-57 105-120 (432)
491 3iqw_A Tail-anchored protein t 85.9 0.48 1.6E-05 39.4 3.1 14 44-57 23-37 (334)
492 3q3j_B RHO-related GTP-binding 85.9 0.33 1.1E-05 36.8 2.0 15 43-57 33-48 (214)
493 3ea0_A ATPase, para family; al 85.8 0.52 1.8E-05 36.0 3.1 13 45-57 14-26 (245)
494 3i8s_A Ferrous iron transport 85.8 0.3 1E-05 39.0 1.8 15 43-57 9-24 (274)
495 2pt7_A CAG-ALFA; ATPase, prote 85.7 0.25 8.6E-06 40.9 1.3 15 43-57 177-192 (330)
496 3cpj_B GTP-binding protein YPT 85.7 0.34 1.2E-05 36.7 2.0 15 43-57 19-34 (223)
497 2gza_A Type IV secretion syste 85.7 0.3 1E-05 40.8 1.8 15 43-57 181-196 (361)
498 1zu4_A FTSY; GTPase, signal re 85.5 0.33 1.1E-05 40.0 2.0 15 43-57 111-126 (320)
499 1qhl_A Protein (cell division 85.5 0.26 9.1E-06 38.8 1.3 15 43-57 33-48 (227)
500 3cwq_A Para family chromosome 85.4 0.52 1.8E-05 35.9 2.9 13 45-57 10-22 (209)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-32 Score=236.49 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=117.4
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccccc
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQSN 67 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~~ 67 (170)
.+..+|++|++.+++|++|.+.+ || ||||||++|+|+| +.++ +.+...
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 45678999999999999998877 69 9999999999999 2222 222221
Q ss_pred -------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 68 -------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 68 -------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
+||||||||+|++++.+. ...+++++||++|||+.. ..+++||+|||+++.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhh
Confidence 299999999999997321 235689999999999976 578999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
||||++||||||++|+|++|+. +..+++. +..++... .+|+|+|..++
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999999999999 4455542 33444333 58999987764
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-31 Score=234.73 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=117.6
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ 65 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~ 65 (170)
...++.+|++|++.+++|++|...+ || ||||||++|+|+| +..+ +.+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 3456678999999999999998776 69 9999999999999 2222 2222
Q ss_pred cc-------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 66 SN-------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 66 ~~-------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
.. +||||||||+|+++..+. ...+++++||++|||+.+ .++++||+|||++
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCc
Confidence 21 299999999999997432 224578899999999976 5789999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
+.||||++||||||++|+|++|+. +..+++. +..++... .+|+|+|..++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~ 395 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT 395 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999 4555543 33333333 58999987764
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-31 Score=234.48 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=118.5
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ 65 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~ 65 (170)
...+..+|++|++.+++|++|.+.+ || ||||||++|+|+| +..+ +.+.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 4456679999999999999998877 69 9999999999999 2222 2222
Q ss_pred cc-------------------CceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 66 SN-------------------SRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 66 ~~-------------------~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
.. +||||||||+|+++..+ ....++++++|++|||... .++++||+|||++
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCCh
Confidence 21 29999999999999733 1335788999999999876 5789999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l 168 (170)
+.||||++||||||++|+|++|+. +..++.. +..++.. ..+|+|+|.+++
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999 4445432 3344433 358999988764
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-31 Score=233.11 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=117.1
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccccc
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQSN 67 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~~ 67 (170)
.+..+|++|++.+++|++|...+ || ||||||++|+|+| +.++ +.+.+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 45668999999999999998777 69 9999999999999 2222 222221
Q ss_pred -------------------CceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 68 -------------------SRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 68 -------------------~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
+||||||||+|+++..+ ....+++++||++|||+.. ..+++||+|||+++.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTTS
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCchh
Confidence 19999999999999733 1235678999999999976 478999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
||||++||||||++|+|++|+. +..++.. +..++... .+|+|+|..++
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999999999 4455543 33344333 58999988764
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-31 Score=229.78 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=116.3
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccc-----cccccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLD-----LKEFQS 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~-----l~~v~~ 66 (170)
-.+..+|++|++.+++|++|...+ || ||||||++|+|+| +.. .+.+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 345568999999999999998777 69 9999999999999 222 222222
Q ss_pred -------------------cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 67 -------------------NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 67 -------------------~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
.+||||||||+|+++..+ ....+.+++||++|||+.+ ..+++||+|||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 129999999999999732 2345789999999999976 57899999999999
Q ss_pred CCCCCCCCCCccceEEEcC-CCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857 120 HIDPVPLRPSCMDMHFHLS-SHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~-~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l 168 (170)
.||||++||||||++|+|+ +|+. +..++.. +..++.. ..+|+|+|..++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~ 387 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIM 387 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHH
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999999996 7988 4444432 3333333 358999988764
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=229.72 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=117.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ 65 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~ 65 (170)
.-.+..+|++|++.+++|++|.+.+ || ||||||++|+|+| +..+ +.+.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 3456679999999999999998776 69 9999999999999 2222 2222
Q ss_pred cc-------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 66 SN-------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 66 ~~-------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
+. +||||||||+|+++..+. ...++++++|++|||... ..+++||+|||++
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCc
Confidence 21 299999999999997431 234678899999999876 5789999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhcC-CCCHHHHHHhh
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~~-~~s~a~i~~~l 168 (170)
+.||||++||||||++|+|++|+. +..+++. +..+.... .+|+|+|..++
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 999999999999999999999999 4555542 33333333 58999988764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=1.8e-28 Score=227.92 Aligned_cols=147 Identities=19% Similarity=0.235 Sum_probs=99.6
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----c----
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----E---- 63 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~---- 63 (170)
.+..+|+++++.+++|++|.+.+ || ||||||++|+|+| +.++. .
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 45568999999999999998877 69 9999999999999 22111 1
Q ss_pred -----------ccc----cCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 64 -----------FQS----NSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 64 -----------v~~----~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
++. .+||||||||+|++++.++ ...+.+++||++|||+.. ..+++||+|||+++.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 628 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchh
Confidence 111 1299999999999997432 345789999999999976 578999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc--chHHHH------------HHHHHhhcC-CCCHHHHHHhh
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF--RHYLFE------------KIEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~--~~~l~~------------~~~~~~~~~-~~s~a~i~~~l 168 (170)
||+|++||||||.+|++++|+. +..+++ ++..++... .+|+|+|.+++
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~ 691 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHH
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999999998 223321 234444333 58999988764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.93 E-value=8.2e-26 Score=210.02 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=115.5
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccccc-----c---
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLKEF-----Q--- 65 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~~v-----~--- 65 (170)
+..+|++|++.++++++|.+.+ || ||||||++||++| +..+..+ .
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 4467999999999999988766 69 9999999999999 1111111 1
Q ss_pred ----------------ccCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 66 ----------------SNSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 66 ----------------~~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
.++||||||||+|++++.+ +...+.+++|+..||++.+ ..+++||+|||+++.||+|
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSCTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcCHH
Confidence 1229999999999999732 3446789999999999976 4689999999999999999
Q ss_pred CCCCCccceEEEcCCCCc--chHHHHH------------HHHHhhc-CCCCHHHHHHhh
Q 036857 125 PLRPSCMDMHFHLSSHTF--RHYLFEK------------IEERLAK-IQATPAEVPGEL 168 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~--~~~l~~~------------~~~~~~~-~~~s~a~i~~~l 168 (170)
++||||||++|+++.|+. +..+++. +..+... ..+++++|..++
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999 4455442 3444433 358999887754
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.89 E-value=7.9e-24 Score=174.34 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=103.8
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----------
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK----------- 62 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~----------- 62 (170)
+..+|+++++.+++|+.+...+ || ||||||++++++| ..++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4568999999999999887643 69 9999999999999 11111
Q ss_pred ---------ccccc----CceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 63 ---------EFQSN----SRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 63 ---------~v~~~----~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
.++.. .|+++|+||+|.++..+. ...+..++++..|||... +..++++++||+++.||+|
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHh
Confidence 11111 289999999999876321 224567889999999865 4678999999999999999
Q ss_pred CCCCCccceEEEcCCCCc--chHHHHHH---------------HHHhhc---CCCCHHHHHHhh
Q 036857 125 PLRPSCMDMHFHLSSHTF--RHYLFEKI---------------EERLAK---IQATPAEVPGEL 168 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~--~~~l~~~~---------------~~~~~~---~~~s~a~i~~~l 168 (170)
++||||||.+|++++|+. +..+++.+ ..+... ..+|+|||..++
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 999999999999999999 44444332 222222 268999987654
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.88 E-value=1.1e-22 Score=168.60 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=97.8
Q ss_pred CCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----cc---
Q 036857 20 EHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EF--- 64 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v--- 64 (170)
.++.+|+++++.+.+++++...+ || ||||||++|+++| ..++. .+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 45678999999999998876543 69 9999999999999 11111 11
Q ss_pred ------------c----ccCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 65 ------------Q----SNSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 65 ------------~----~~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
+ ...|+||||||+|.+...+ +...+.+++++..||++.. ..+++||+|||+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 0 1128999999999988622 2345678999999999864 468999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|+|++|||||+..|+++.|+.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCH
T ss_pred cChHHhcCCccceEEecCCcCH
Confidence 9999999999999999999999
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=164.42 Aligned_cols=145 Identities=21% Similarity=0.200 Sum_probs=108.3
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc---cccc-----ccc--
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL---DLKE-----FQS-- 66 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~---~l~~-----v~~-- 66 (170)
++.+|+++++.+++|+.|...+ || ||||||++|+++| .+ .+.. +..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 4568999999999999886433 79 9999999999999 22 1111 111
Q ss_pred -----------------cCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 67 -----------------NSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
..|+||||||+|.++..+. ...+.+++++..+|++... ..+++||+|||+++.+|+|
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCCHH
Confidence 1289999999999987332 2456788999999998642 4689999999999999999
Q ss_pred CCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857 125 PLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l 168 (170)
++| ||+..+++++|+. +..++. .+..+.... .+++++|..++
T Consensus 166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999 9999999999998 222222 233333333 47888877654
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.86 E-value=1.3e-21 Score=172.96 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=96.4
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc---------
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ--------- 65 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~--------- 65 (170)
...+|+++++.++.++++...+ || ||||||++|+++| ...+..+.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV 90 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence 4558999999999988876543 69 9999999999999 22211111
Q ss_pred ---------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 66 ---------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 66 ---------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
...||||||||+|.+...++ .....+++++..||++.. ..+++||+|||+++.+|
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILD 168 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGGSC
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhhhc
Confidence 11299999999999976432 224678999999998764 46899999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++||||||..|+++.|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~ 188 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDM 188 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCH
T ss_pred hhhcccCcceeEeecCCCCH
Confidence 99999999999999999997
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=1.2e-21 Score=163.59 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=111.4
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~ 65 (170)
+...++.+|+++++.+++|+.+...+ || ||||||++|+++| ...+ ..+.
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 34667789999999999999886544 69 9999999999999 1111 1111
Q ss_pred c-------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 66 S-------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 66 ~-------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
. ..|+||||||+|.+...+ ....+..++++..+|++... ..+++||+|||+++.|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhC
Confidence 1 128999999999998733 23456789999999998643 5689999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l 168 (170)
|+|++| ||+..++++.|+. +..++. .+..+.... .+++++|..++
T Consensus 168 d~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 168 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999 9999999999999 333332 233333333 47888877654
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=4.2e-21 Score=154.65 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=97.4
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc-------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ------- 65 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~------- 65 (170)
...+.+|+++++.+.+++++...+ || ||||||++|+++| ...+..+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 456778999999999998875432 69 9999999999999 11111111
Q ss_pred -----------------ccCceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 66 -----------------SNSRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 66 -----------------~~~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
...|+++|+||+|.+...+. .....+++++..+|+... ..++++|+|||+++.
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDV 162 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCchh
Confidence 01289999999999987332 123678889999999864 468999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++++|||||+..++++.|+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~ 184 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDV 184 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCH
T ss_pred CCHHHcCCCcCCeEEEeCCCCH
Confidence 9999999999999999999998
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=4.1e-21 Score=156.20 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=97.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----cccc
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQ 65 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~ 65 (170)
...++.+|+++++.+.+++++...+ || ||||||++|+++| ...+ ..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 3455678999999999999886544 69 9999999999999 1111 1111
Q ss_pred c-------------------cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 66 S-------------------NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 66 ~-------------------~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
. ..|+||||||+|.++..+ ......+..+++.+++... ..++++|+|||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRP 166 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCc
Confidence 1 118999999999997632 2334667778888887754 4689999999999
Q ss_pred CCCCCCCCCCCccceEEEcCCCCc
Q 036857 119 DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 119 ~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.+|++++|+|||+..++++.|+.
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~ 190 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDE 190 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCH
T ss_pred hhcCHHHcCCCcCCeEEEECCCCH
Confidence 999999999999999999999998
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=154.83 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=89.4
Q ss_pred CCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc----------
Q 036857 22 PATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ---------- 65 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~---------- 65 (170)
+.+|+++++.+.+|+.+...+ || ||||||++|+++| ...+..+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 467999999999998885432 79 9999999999999 21111111
Q ss_pred --------------ccCceeEeeechhhhccCC---------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 66 --------------SNSRSILVIEDAVTSFESN---------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 66 --------------~~~p~il~iDEiD~~~~~~---------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
...|+||||||+|.+...+ ......+..+++.+++... ..++++|+|||.++.+|
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADILD 159 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGGG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhcC
Confidence 1128999999999997632 2334667889999998754 46899999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
++++|+|||+..++++.|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~ 179 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTL 179 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCH
T ss_pred HHHhcCCcCCeEEEeCCcCH
Confidence 99999999999999999998
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=2.1e-21 Score=180.52 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=94.9
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---cccc-----ccccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~ 66 (170)
..+...|+++++.+++|+.+...+ || ||||||++|+++| ..++ ..+..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 344567999999999999887654 69 9999999999999 2222 11111
Q ss_pred c-------------------CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 67 N-------------------SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 67 ~-------------------~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
. .|||+||||+|.++..++ ...+.+++||+.||+... ..+++||+|||+++
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPD 627 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcc
Confidence 1 189999999999987432 345678999999999865 47899999999999
Q ss_pred CCCCCCCCCCccceEEEcCCCCc
Q 036857 120 HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.||+|++||||||.+|++++|+.
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~ 650 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCC
T ss_pred cCCHHHhCccccCceeecCCCCH
Confidence 99999999999999999999999
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=1.6e-20 Score=159.44 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=93.1
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccc-----ccccc-
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDL-----KEFQS- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l-----~~v~~- 66 (170)
..++.+|+++++.+++++.|...+ || ||||||++|+++| ...+ ..+..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 455678999999999998886433 79 9999999999999 1111 11111
Q ss_pred ------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 67 ------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 67 ------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
..|+||||||+|.+...+ ....+..++++..||++... ..+++||+|||+++.||+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCH
Confidence 128999999999998632 23356788899999998642 457999999999999999
Q ss_pred CCCCCCccceEEEcCCCCc
Q 036857 124 VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~ 142 (170)
+++| ||+..++++.|+.
T Consensus 203 al~r--Rf~~~i~i~~P~~ 219 (355)
T 2qp9_X 203 AIRR--RFERRIYIPLPDL 219 (355)
T ss_dssp HHHH--TCCEEEECCCCCH
T ss_pred HHHc--ccCEEEEeCCcCH
Confidence 9999 9999999999998
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.82 E-value=2.9e-20 Score=162.28 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=108.4
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH-cc---cc-----ccccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA-DL---DL-----KEFQS 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA-~~---~l-----~~v~~ 66 (170)
..++.+|+++++.+.+++.|...+ || ||||||++|+++| .+ .+ ..+..
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 355678999999999998886422 79 9999999999999 22 11 11111
Q ss_pred -------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 67 -------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 67 -------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
..|+||||||+|.+++.+ ....+..++|+..||++... ..+++||+|||+++.+|
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLD 285 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGSC
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCccccC
Confidence 128999999999997632 23457888999999998542 46899999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc--chHHHH-------------HHHHHhhcC-CCCHHHHHHhh
Q 036857 123 PVPLRPSCMDMHFHLSSHTF--RHYLFE-------------KIEERLAKI-QATPAEVPGEL 168 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~--~~~l~~-------------~~~~~~~~~-~~s~a~i~~~l 168 (170)
++++| ||+..+++++|+. +..++. .+..+.... .+++++|..++
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999 9999999999998 222222 233333323 57888887654
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.82 E-value=4.8e-20 Score=163.20 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=97.2
Q ss_pred CCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH---ccccc-----cccc--
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA---DLDLK-----EFQS-- 66 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA---~~~l~-----~v~~-- 66 (170)
.+.+|+++++...+++++...+ || ||||||++|+++| +..+. .+..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 4567999999999988876544 69 9999999999999 11111 1111
Q ss_pred -----------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCC
Q 036857 67 -----------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPV 124 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~A 124 (170)
..|++|||||+|.+...+ ......++.|+..||+... ..+++||+|||+++.||++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 128999999999998743 2334678889999998865 5689999999999999999
Q ss_pred CCCCCccceEEEcCCCCc
Q 036857 125 PLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 125 llRpgR~d~~i~~~~p~~ 142 (170)
+.|+|||+..|+++.|+.
T Consensus 357 l~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp GGSTTSSCEEEECCCCCH
T ss_pred HhCCCcCceEEEeCCCCH
Confidence 999999999999999998
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.82 E-value=9.9e-20 Score=146.31 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=93.9
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccc----------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLK---------- 62 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~---------- 62 (170)
..++.+|+++++.++.+.++.... || ||||||++++++| .....
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 344568999999998887765432 69 9999999999999 11111
Q ss_pred ----------cccc----cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 63 ----------EFQS----NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 63 ----------~v~~----~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
.++. ..|+++++||+|.+...+ ......++++++.++|... +..++++++||+++.
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 166 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchh
Confidence 1111 127999999999987532 1224567888999998754 456899999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++++|+||||.+|+++.|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~ 188 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDV 188 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCH
Confidence 9999999999999999999998
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.82 E-value=5e-20 Score=163.62 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=96.5
Q ss_pred CCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccc--------c-----
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLD--------L----- 61 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~--------l----- 61 (170)
++.+|+++++.++.|+++.+.+ || ||||||++|+++| ... +
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 5678999999999988876443 69 9999999999999 111 1
Q ss_pred -------cccccc----CceeEeeechhhhccCCc--------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 62 -------KEFQSN----SRSILVIEDAVTSFESNA--------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 62 -------~~v~~~----~p~il~iDEiD~~~~~~~--------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
..++.. .||++|+||+|.+...+. .....+++++..|||... +..+++++|||+++.||
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILD 183 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGSC
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhcC
Confidence 111111 289999999999876322 224678899999999864 46789999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
++++||||||+.|+++.|+.
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCH
T ss_pred cccccccccceEEecCCCCH
Confidence 99999999999999999998
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.82 E-value=8.6e-21 Score=153.23 Aligned_cols=122 Identities=24% Similarity=0.316 Sum_probs=91.9
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---cccccccc--------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLKEFQ-------- 65 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~~v~-------- 65 (170)
.++.+|+++++.+.+++.+...+ || ||||||++|+++| ...+..+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 34557899999988887765432 79 9999999999999 11111110
Q ss_pred ----------------ccCceeEeeechhhhccCCc---------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 66 ----------------SNSRSILVIEDAVTSFESNA---------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 66 ----------------~~~p~il~iDEiD~~~~~~~---------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
...|+||||||+|.+...+. .....++++++.+++.... ..++++|+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPEI 163 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCchh
Confidence 01279999999999976321 1223567788888887542 346899999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++++|+|||+..++++.|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~ 185 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDF 185 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCT
T ss_pred cCHhHcCCCCCCeEEEecCcCH
Confidence 9999999999999999999998
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.81 E-value=1.7e-20 Score=155.40 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=67.6
Q ss_pred cc-CCCcHHHHHHHHH---ccccc-----c---------------cc--------ccCceeEeeechhhhccCCc-----
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLK-----E---------------FQ--------SNSRSILVIEDAVTSFESNA----- 85 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~-----~---------------v~--------~~~p~il~iDEiD~~~~~~~----- 85 (170)
|| ||||||++|+++| +..+. . ++ ...||||||||+|.+++..+
T Consensus 42 ~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~ 121 (293)
T 3t15_A 42 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 121 (293)
T ss_dssp EECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccc
Confidence 79 9999999999999 11111 1 11 22499999999999987332
Q ss_pred --cchHHHHHHHHHhhchh---------ccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 86 --YNSVALSALLKFVDGLW---------SSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 86 --~~~~~~~~ll~~lDg~~---------~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..+...+.|++.||+.. .....++++|+|||+++.+|+|++||||||..|++ |+.
T Consensus 122 ~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 22356688999998553 01135799999999999999999999999999985 555
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=154.97 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=95.5
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccc
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEF 64 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v 64 (170)
.+...++.+|+++++...+++.+...+ || ||||||++|+++| . ++...+
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 344667889999999999999886433 79 9999999999999 1 111111
Q ss_pred cc-------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 65 QS-------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 65 ~~-------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
.. ..|+||||||+|.++..+ ....+..+.++..+++.....+.+++||+|||+++.
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 11 117999999999997632 234667888999999987644567999999999999
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++++| ||+..++++.|+.
T Consensus 265 l~~~l~~--R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 265 LDEAVLR--RFIKRVYVSLPNE 284 (389)
T ss_dssp CCHHHHT--TCCEEEECCCCCH
T ss_pred cCHHHHc--CcceEEEcCCcCH
Confidence 9999999 9999999999998
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=151.69 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=94.7
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccc-
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~- 66 (170)
..++.+|+++++.+.+++.+...+ || ||||||++|+++| . ++...+..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 456778999999999998875433 79 9999999999999 1 12222211
Q ss_pred ------------------cCceeEeeechhhhccCC-----ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCC
Q 036857 67 ------------------NSRSILVIEDAVTSFESN-----AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDP 123 (170)
Q Consensus 67 ------------------~~p~il~iDEiD~~~~~~-----~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~ 123 (170)
..|+||||||+|.+...+ ....+.+++++..+++.......+++||+|||+++.+|+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 118999999999998632 234567888999999986544568999999999999999
Q ss_pred CCCCCCccceEEEcCCCCc
Q 036857 124 VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~ 142 (170)
+++| ||+..++++.|+.
T Consensus 237 ~l~~--Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEA 253 (357)
T ss_dssp HHHT--TCCEEEECCCCCH
T ss_pred HHHh--hCceEEEeCCcCH
Confidence 9999 9999999999998
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=8.7e-19 Score=143.37 Aligned_cols=122 Identities=21% Similarity=0.230 Sum_probs=93.6
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---c-----cccccccc-
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---D-----LDLKEFQS- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~-----~~l~~v~~- 66 (170)
..++.+|+++++.+..++.+...+ || ||||||++|+++| . ++...+..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 456789999999999998876432 69 9999999999999 1 11111111
Q ss_pred ------------------cCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccC-CCCeEEEEeCCCCCCCC
Q 036857 67 ------------------NSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSS-GDGRILVMTTDYKDHID 122 (170)
Q Consensus 67 ------------------~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~-~~~~~vi~tTN~~~~lD 122 (170)
..|+||||||+|.+...+. ......+.++..+|+..... +..+++|+|||+++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 1289999999999987432 23566788999999875421 24689999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
++++| ||+..+++++|+.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~ 191 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDE 191 (297)
T ss_dssp HHHHH--HCCEEEECCCCCH
T ss_pred HHHHh--hCCeEEEeCCcCH
Confidence 99998 9999999999998
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.77 E-value=1e-18 Score=142.63 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=94.9
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc----------------------cc-CCCcHHHHHHHHH---ccccc---------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY----------------------WG-PYTGKSSLIAAMA---DLDLK--------- 62 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~----------------------~G-PGtGKT~la~aiA---~~~l~--------- 62 (170)
...++.+|+++++.+++++++.... || ||||||++++++| ...+.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3346678999999999987765432 69 9999999999999 11111
Q ss_pred -----------cccc----cCceeEeeechhhhccCC--------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 63 -----------EFQS----NSRSILVIEDAVTSFESN--------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 63 -----------~v~~----~~p~il~iDEiD~~~~~~--------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
.++. ..|+++++||+|.+.... ......++++++.++|... +..++++++||+++
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 189 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTT
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCch
Confidence 1111 127999999999887532 1224567788888998754 45689999999999
Q ss_pred CCCCCCCCCCccceEEEcCCCCc
Q 036857 120 HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+|++++|+|||+..|+++.|+.
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~ 212 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDV 212 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCH
Confidence 99999999999999999999998
No 29
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.71 E-value=1.5e-18 Score=151.50 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=82.7
Q ss_pred CCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---c--cccccc-----------------
Q 036857 23 ATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---D--LDLKEF----------------- 64 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~--~~l~~v----------------- 64 (170)
..|+++++.++.++.+...+ || ||||||++|+++| . ..+..+
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHH
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHH
Confidence 35899999999988654433 79 9999999999999 2 222111
Q ss_pred ---------cccCceeEeeechhhhccCCccch------------------------HHHHHHHHHhhchhccCCCCeEE
Q 036857 65 ---------QSNSRSILVIEDAVTSFESNAYNS------------------------VALSALLKFVDGLWSSSGDGRIL 111 (170)
Q Consensus 65 ---------~~~~p~il~iDEiD~~~~~~~~~~------------------------~~~~~ll~~lDg~~~~~~~~~~v 111 (170)
....|||||+||+|+++..++... +..++++..++......++.++|
T Consensus 114 ~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i 193 (456)
T 2c9o_A 114 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYI 193 (456)
T ss_dssp HHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEE
T ss_pred HHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEE
Confidence 122399999999999997443221 11223555555322222344566
Q ss_pred EEeCCCCCCCCCCCCCCCccce--EEEcCCCCc
Q 036857 112 VMTTDYKDHIDPVPLRPSCMDM--HFHLSSHTF 142 (170)
Q Consensus 112 i~tTN~~~~lD~AllRpgR~d~--~i~~~~p~~ 142 (170)
++|||+++.+|+|+.||||||. .+.++.|+.
T Consensus 194 ~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 194 EANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp ETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred EcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 6899999999999999999999 667777754
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.69 E-value=6.8e-17 Score=150.28 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=97.7
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHHHHH-cc-------ccccccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIAAMA-DL-------DLKEFQS 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~aiA-~~-------~l~~v~~ 66 (170)
..++.+|+++++.+.+++++...+ +| ||||||++|+++| .+ +...+..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 345568999999999988876544 69 9999999999999 11 1111111
Q ss_pred -------------------cCceeEeeechhhhccCCc-----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 67 -------------------NSRSILVIEDAVTSFESNA-----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 67 -------------------~~p~il~iDEiD~~~~~~~-----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
..|+++|+||+|.++..++ ...+..+++++.+++... ...+++|+|||+++.+|
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcC
Confidence 1189999999999987432 235677889999999875 46899999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+++.|+|||+..++++.|+.
T Consensus 355 ~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCH
T ss_pred HHHhcccccccccccCCCCH
Confidence 99999999999999999998
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.62 E-value=4.2e-17 Score=142.98 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=26.0
Q ss_pred cc-CCCcHHHHHHHHH---cc-----ccccccc------cC-----------ceeEeeechhhhcc--CCccchHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA---DL-----DLKEFQS------NS-----------RSILVIEDAVTSFE--SNAYNSVALSAL 94 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~-----~l~~v~~------~~-----------p~il~iDEiD~~~~--~~~~~~~~~~~l 94 (170)
+| ||||||++|+++| .. +.+.+.. +. ..++++||+|.+.. .+....+.+++|
T Consensus 56 ~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~L 135 (444)
T 1g41_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDAL 135 (444)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------
T ss_pred EcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHH
Confidence 69 9999999999999 11 1111111 11 44567899988765 334557889999
Q ss_pred HHHhhchhccCCCCeEEEEe-CCCCCCCCCCCCCCCccceEEEcCCCCcc
Q 036857 95 LKFVDGLWSSSGDGRILVMT-TDYKDHIDPVPLRPSCMDMHFHLSSHTFR 143 (170)
Q Consensus 95 l~~lDg~~~~~~~~~~vi~t-TN~~~~lD~AllRpgR~d~~i~~~~p~~~ 143 (170)
++.|||+... .++ +++ ||+++.||+||+||||||++|++++|+..
T Consensus 136 L~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 136 LPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp --------------------------------------------------
T ss_pred HHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 9999999752 233 455 99999999999999999999999999984
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.58 E-value=7.1e-15 Score=122.09 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=86.7
Q ss_pred CCcccCCCCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccccccc------
Q 036857 12 SYWNSNKFEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLKEFQS------ 66 (170)
Q Consensus 12 ~~w~~~~~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~~v~~------ 66 (170)
..|. ....|.+|+++++....++++...+ +| ||||||++|+++| ...+..+..
T Consensus 17 ~~~~--~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 17 ETYE--TSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS 94 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred hhhh--hccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence 3454 4678899999999999888765544 69 9999999999999 222211111
Q ss_pred ----------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhcc--------------CCCCeEEEEeCCCCCCCC
Q 036857 67 ----------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS--------------SGDGRILVMTTDYKDHID 122 (170)
Q Consensus 67 ----------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~--------------~~~~~~vi~tTN~~~~lD 122 (170)
..+++|||||+|.+. ......|+..++..... ...++.+|+|||+...++
T Consensus 95 ~~~~~~~~~~~~~~vl~lDEi~~l~------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 95 GDLAAILTNLSEGDILFIDEIHRLS------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp HHHHHHHHTCCTTCEEEEETGGGCC------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred hHHHHHHHhccCCCEEEEechhhcC------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 128999999999874 34456666666543200 001478999999999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+++++ ||+..++++.|+.
T Consensus 169 ~~L~~--R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 169 NPLRD--RFGMQFRLEFYKD 186 (338)
T ss_dssp HHHHT--TCSEEEECCCCCH
T ss_pred HHHHh--hcCEEeeCCCcCH
Confidence 99997 9999999999987
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=9.5e-15 Score=120.81 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=87.9
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc--cccccc---------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL--DLKEFQ--------------- 65 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~--~l~~v~--------------- 65 (170)
++....|.+|++++++++.++.+...+ +| ||||||++|+++| .+ ++..+.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~ 95 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN 95 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHH
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHH
Confidence 344788999999999999998887655 48 9999999999999 11 111110
Q ss_pred --c-----cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcC
Q 036857 66 --S-----NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLS 138 (170)
Q Consensus 66 --~-----~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~ 138 (170)
. ..+.||||||+|.+.+ ....+.|+..++... .++.+|+|||.++.+++++.+ |+. .++|+
T Consensus 96 ~~~~~~~~~~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~ 163 (324)
T 3u61_B 96 FASAASFDGRQKVIVIDEFDRSGL-----AESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFG 163 (324)
T ss_dssp HHHBCCCSSCEEEEEEESCCCGGG-----HHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECC
T ss_pred HHhhcccCCCCeEEEEECCcccCc-----HHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeC
Confidence 0 1278999999998851 234566777777653 478899999999999999997 775 69999
Q ss_pred CCCc
Q 036857 139 SHTF 142 (170)
Q Consensus 139 ~p~~ 142 (170)
.|+.
T Consensus 164 ~~~~ 167 (324)
T 3u61_B 164 QPTD 167 (324)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 9997
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.53 E-value=1.2e-14 Score=117.73 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=78.1
Q ss_pred cc-CCCcHHHHHHHHH---ccccccc---------------------c----ccCceeEeeechhhhccCC----ccchH
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEF---------------------Q----SNSRSILVIEDAVTSFESN----AYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v---------------------~----~~~p~il~iDEiD~~~~~~----~~~~~ 89 (170)
|| ||||||++|+++| ...+..+ + ...+++|||||+|.+++.. .....
T Consensus 70 ~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 149 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNL 149 (272)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHH
Confidence 79 9999999999999 2221111 0 0128999999999997622 22344
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCcchHHHHHHHHHhhcCCCCHHHHH
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTFRHYLFEKIEERLAKIQATPAEVP 165 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~~~~l~~~~~~~~~~~~~s~a~i~ 165 (170)
.+..|...+++.... +.++++|+|||.++.+|++.++ +||+..|+++.++.+..+...+.. ...++++++.
T Consensus 150 ~l~~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~---~~~~~~~~~~ 220 (272)
T 1d2n_A 150 VLQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL---LGNFKDKERT 220 (272)
T ss_dssp HHHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH---HTCSCHHHHH
T ss_pred HHHHHHHHhcCccCC-CCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh---cCCCCHHHHH
Confidence 555666666665432 4578899999999999985443 599999999776665554443332 2345555543
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.53 E-value=1.1e-14 Score=119.07 Aligned_cols=110 Identities=17% Similarity=0.265 Sum_probs=83.0
Q ss_pred cccCChhhHHHhhcC-------------------------ccc-CCCcHHHHHHHHH-cc---------ccccccc----
Q 036857 27 TIATDFDMNKALVDD-------------------------YWG-PYTGKSSLIAAMA-DL---------DLKEFQS---- 66 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~-------------------------~~G-PGtGKT~la~aiA-~~---------~l~~v~~---- 66 (170)
++++.+.+|+.+... +|| ||||||++|+++| .+ .+..+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 689999999887632 179 9999999999999 11 1111111
Q ss_pred -----------------cCceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CC
Q 036857 67 -----------------NSRSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HI 121 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~l 121 (170)
..++||||||+|.++..+ .......+.|++.++.. ..++++|+|||..+ .+
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~ 187 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQS 187 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhh
Confidence 118899999999998633 23566778888888864 35788999998654 36
Q ss_pred CCCCCCCCccceEEEcCCCCc
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~ 142 (170)
+|++++ ||+.+|+|+.|+.
T Consensus 188 ~~~l~~--R~~~~i~~~~~~~ 206 (309)
T 3syl_A 188 NPGFRS--RIAHHIEFPDYSD 206 (309)
T ss_dssp STTHHH--HEEEEEEECCCCH
T ss_pred CHHHHH--hCCeEEEcCCcCH
Confidence 899997 9999999999998
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.52 E-value=1.2e-13 Score=113.62 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=84.1
Q ss_pred CCCCCCcccccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHHH---ccccc--------------ccc
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY---------------WG-PYTGKSSLIAAMA---DLDLK--------------EFQ 65 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~aiA---~~~l~--------------~v~ 65 (170)
...|.+|+++++....++.+...+ +| ||||||++|+++| ...+. ...
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHH
Confidence 567889999999998877654332 79 9999999999999 11111 111
Q ss_pred c---cCceeEeeechhhhccCCccchHHHHHHHHHhhchhcc--------------CCCCeEEEEeCCCCCCCCCCCCCC
Q 036857 66 S---NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS--------------SGDGRILVMTTDYKDHIDPVPLRP 128 (170)
Q Consensus 66 ~---~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~--------------~~~~~~vi~tTN~~~~lD~AllRp 128 (170)
. ..+++|||||+|.+.. .....++..++..... ...++.+|+|||..+.+++++.+
T Consensus 85 ~~~~~~~~~l~lDEi~~l~~------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~- 157 (324)
T 1hqc_A 85 ANSLEEGDILFIDEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS- 157 (324)
T ss_dssp TTTCCTTCEEEETTTTSCCH------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT-
T ss_pred HHhccCCCEEEEECCccccc------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh-
Confidence 1 2388999999998743 3345556665543100 01357899999999999999997
Q ss_pred CccceEEEcCCCCc
Q 036857 129 SCMDMHFHLSSHTF 142 (170)
Q Consensus 129 gR~d~~i~~~~p~~ 142 (170)
||+..++++.|+.
T Consensus 158 -R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 158 -RFGIVEHLEYYTP 170 (324)
T ss_dssp -TCSCEEECCCCCH
T ss_pred -cccEEEecCCCCH
Confidence 9999999999987
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.3e-13 Score=105.50 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-------ccccccc------------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D-------LDLKEFQ------------ 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-------~~l~~v~------------ 65 (170)
.....|..|+++++.+...+.+...+ +| ||||||++|++++ . ..+..+.
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence 34678899999999999888876544 79 9999999999998 1 0011110
Q ss_pred ------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccce
Q 036857 66 ------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDM 133 (170)
Q Consensus 66 ------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~ 133 (170)
...+.+|+|||+|.+.. .....++..++.. ..++.+|+|||.++.+++++.+ |+.
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~- 154 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTA------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA- 154 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCH------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-
Confidence 12388999999998743 2345566666654 3578899999999999999987 777
Q ss_pred EEEcCCCCc
Q 036857 134 HFHLSSHTF 142 (170)
Q Consensus 134 ~i~~~~p~~ 142 (170)
.++++.|+.
T Consensus 155 ~i~~~~~~~ 163 (226)
T 2chg_A 155 VFRFKPVPK 163 (226)
T ss_dssp EEECCCCCH
T ss_pred eeecCCCCH
Confidence 889988886
No 38
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.44 E-value=1.1e-13 Score=114.85 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=81.6
Q ss_pred CCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH---cccccccccc--------------------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA---DLDLKEFQSN-------------------- 67 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA---~~~l~~v~~~-------------------- 67 (170)
..|..++++++.++.++.+...+ || ||||||++|+++| ...+..+...
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~ 100 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN 100 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE
T ss_pred HHHHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc
Confidence 44556788899998888776554 79 9999999999999 1111111110
Q ss_pred -----C---ceeEeeechhhhccCCccchHHHHHHHHHhhch-------hccCCCCeEEEEeCCCCC-----CCCCCCCC
Q 036857 68 -----S---RSILVIEDAVTSFESNAYNSVALSALLKFVDGL-------WSSSGDGRILVMTTDYKD-----HIDPVPLR 127 (170)
Q Consensus 68 -----~---p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~-------~~~~~~~~~vi~tTN~~~-----~lD~AllR 127 (170)
. .+|+|+||+|.+. ....+.+++.|+.- ....+..+++++|+|..+ .+++++++
T Consensus 101 ~~~~~g~l~~~vl~iDEi~~~~------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~ 174 (331)
T 2r44_A 101 FEVKKGPVFSNFILADEVNRSP------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD 174 (331)
T ss_dssp EEEEECTTCSSEEEEETGGGSC------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT
T ss_pred eEeccCcccccEEEEEccccCC------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh
Confidence 0 2799999999763 34456666666532 112245678888888554 38999997
Q ss_pred CCccceEEEcCCCCc
Q 036857 128 PSCMDMHFHLSSHTF 142 (170)
Q Consensus 128 pgR~d~~i~~~~p~~ 142 (170)
||+.++++++|+.
T Consensus 175 --Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 175 --RFMMKIHLTYLDK 187 (331)
T ss_dssp --TSSEEEECCCCCH
T ss_pred --heeEEEEcCCCCH
Confidence 9999999999987
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.41 E-value=5.5e-13 Score=108.37 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=69.1
Q ss_pred cc-CCCcHHHHHHHHH---c-----ccccccc-----------------c---------cCceeEeeechhhhccCCc--
Q 036857 43 WG-PYTGKSSLIAAMA---D-----LDLKEFQ-----------------S---------NSRSILVIEDAVTSFESNA-- 85 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~-----~~l~~v~-----------------~---------~~p~il~iDEiD~~~~~~~-- 85 (170)
|| ||||||++|+++| . ++...+. . ..++||||||+|.+.....
T Consensus 56 ~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 135 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS 135 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc
Confidence 79 9999999999999 1 1111110 0 1278999999999986331
Q ss_pred --cc--hHHHHHHHHHhhchhcc------CCCCeEEEEe----CCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 86 --YN--SVALSALLKFVDGLWSS------SGDGRILVMT----TDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 86 --~~--~~~~~~ll~~lDg~~~~------~~~~~~vi~t----TN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.. ....+.|+..+++.... ...++++|+| ++.+..+++++++ ||+..|+|+.|+.
T Consensus 136 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 136 GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSA 204 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCH
T ss_pred ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCH
Confidence 11 12356788888864210 1246788888 5688899999995 9999999999998
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=2.1e-13 Score=102.08 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------ccc-------ccc----
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------DLK-------EFQ---- 65 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~l~-------~v~---- 65 (170)
...|..|+++++.++..+++...+ +| ||||||++|++++ .+ +.. ...
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 94 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC
T ss_pred HHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCC
Confidence 345778999999888877776544 79 9999999999999 11 111 000
Q ss_pred ------------------ccCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----C
Q 036857 66 ------------------SNSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----H 120 (170)
Q Consensus 66 ------------------~~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~ 120 (170)
...++||+|||+|.+...+.. .....+.+...++ ..++.+|+|||.++ .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~ 168 (195)
T 1jbk_A 95 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA------RGELHCVGATTLDEYRQYIE 168 (195)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH------TTSCCEEEEECHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc------cCCeEEEEeCCHHHHHHHHh
Confidence 011779999999998752210 1111222222222 24678888888776 7
Q ss_pred CCCCCCCCCccceEEEcCCCCc
Q 036857 121 IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 121 lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+|+++.| ||+ .|+++.|+.
T Consensus 169 ~~~~l~~--r~~-~i~~~~p~~ 187 (195)
T 1jbk_A 169 KDAALER--RFQ-KVFVAEPSV 187 (195)
T ss_dssp TCHHHHT--TEE-EEECCCCCH
T ss_pred cCHHHHH--Hhc-eeecCCCCH
Confidence 8999998 998 699999986
No 41
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=7.9e-13 Score=107.67 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred ccCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------cccc------c-
Q 036857 15 NSNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLK------E- 63 (170)
Q Consensus 15 ~~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~------~- 63 (170)
.++....|.+|+++++.+..++.+...+ || ||||||++|+++| . ++.+ .
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV 85 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH
Confidence 3456889999999999999999988776 79 9999999999998 1 0100 0
Q ss_pred ------cc------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 036857 64 ------FQ------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCM 131 (170)
Q Consensus 64 ------v~------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~ 131 (170)
.. ...+.|+++||+|.+.. ...+.|+..++.. +.++.+|++||.++.+++++.+ |+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~ 153 (319)
T 2chq_A 86 RHKIKEFARTAPIGGAPFKIIFLDEADALTA------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RC 153 (319)
T ss_dssp SHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------HHHHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TC
T ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hC
Confidence 00 12278999999998743 2344455555543 4578899999999999999987 66
Q ss_pred ceEEEcCCCCc
Q 036857 132 DMHFHLSSHTF 142 (170)
Q Consensus 132 d~~i~~~~p~~ 142 (170)
. .++|+.|+.
T Consensus 154 ~-~i~~~~~~~ 163 (319)
T 2chq_A 154 A-VFRFKPVPK 163 (319)
T ss_dssp E-EEECCCCCH
T ss_pred e-EEEecCCCH
Confidence 5 799988886
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.41 E-value=1.1e-12 Score=109.60 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=44.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC-----------CCCCCCCCCCCCCCccceEEEc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT-----------DYKDHIDPVPLRPSCMDMHFHL 137 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT-----------N~~~~lD~AllRpgR~d~~i~~ 137 (170)
|+||||||+|.+. ....+.|+..++.. ...+++++|+ |.++.+|+++++ ||.. ++|
T Consensus 190 ~~vl~IDEi~~l~------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~ 256 (368)
T 3uk6_A 190 PGVLFIDEVHMLD------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST 256 (368)
T ss_dssp BCEEEEESGGGSB------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred CceEEEhhccccC------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence 5799999999873 34556677766553 2345555554 358899999998 8877 799
Q ss_pred CCCCc
Q 036857 138 SSHTF 142 (170)
Q Consensus 138 ~~p~~ 142 (170)
+.|+.
T Consensus 257 ~~~~~ 261 (368)
T 3uk6_A 257 TPYSE 261 (368)
T ss_dssp CCCCH
T ss_pred cCCCH
Confidence 99877
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.40 E-value=1.2e-13 Score=123.25 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=76.9
Q ss_pred cccccCChhhHHHhhcCc----------------cc-CCCcHHHHHHHHH--------ccccccccc-------------
Q 036857 25 SNTIATDFDMNKALVDDY----------------WG-PYTGKSSLIAAMA--------DLDLKEFQS------------- 66 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~----------------~G-PGtGKT~la~aiA--------~~~l~~v~~------------- 66 (170)
.+++.+..++++.+...+ +| ||||||++|+++| .+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 455888888888774332 69 9999999999999 111111100
Q ss_pred -----------c---CceeEeeechhhhccCCccchHHHHHHHHHhhchhccC-----------CCCeEEEEeCCCCCCC
Q 036857 67 -----------N---SRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS-----------GDGRILVMTTDYKDHI 121 (170)
Q Consensus 67 -----------~---~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~-----------~~~~~vi~tTN~~~~l 121 (170)
. ...|+|+||+|.+.... .....+.|++.||...... ..++++|+|||+++.+
T Consensus 160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~--~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l 237 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF--RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATI 237 (543)
T ss_dssp ----CHHHHHHTTCSSSEEEEEEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTS
T ss_pred cCchHHHHHHHHhhccCCEEEEhhhhhhhhhh--ccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccC
Confidence 0 14499999999997632 2235677888887543110 1468999999999999
Q ss_pred CCCCCCCCccceEEEcCCCCc
Q 036857 122 DPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 122 D~AllRpgR~d~~i~~~~p~~ 142 (170)
|++|+| ||+ .|+|+.|+.
T Consensus 238 ~~aL~~--R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 238 PGPLRD--RME-IINIAGYTE 255 (543)
T ss_dssp CHHHHH--HEE-EEECCCCCH
T ss_pred CHHHHh--hcc-eeeeCCCCH
Confidence 999998 996 689999988
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.40 E-value=5.9e-13 Score=110.27 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cccc-------------------------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DLDL------------------------- 61 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~~l------------------------- 61 (170)
..+|.+|+++++.+..++.+.... || ||||||++|+++| .++-
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 345668999999998877643222 79 9999999999999 1110
Q ss_pred -------------------ccccc----------c------------CceeEeeechhhhccCCccchHHHHHHHHHhhc
Q 036857 62 -------------------KEFQS----------N------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG 100 (170)
Q Consensus 62 -------------------~~v~~----------~------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg 100 (170)
..+.. . .+++|||||+|.+.. ...+.|+..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------~~~~~Ll~~le~ 170 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------HIVDLLLDVAQS 170 (350)
T ss_dssp CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------HHHHHHHHHHHH
T ss_pred cccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------HHHHHHHHHHhc
Confidence 00110 0 167999999998743 345566666653
Q ss_pred h----hc-----cCCCCeEEEEeCCCCC-CCCCCCCCCCccceEEEcCCCCc
Q 036857 101 L----WS-----SSGDGRILVMTTDYKD-HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 101 ~----~~-----~~~~~~~vi~tTN~~~-~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
- .. ..+.++++|+|||..+ .+++++++ ||+.+++++.|+.
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRD 220 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCS
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCc
Confidence 1 10 0023688999999755 89999998 9999999999965
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=2e-12 Score=99.64 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=83.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|..|+++++.+...+.+...+ +| ||||||+++++++ .+
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 94 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCC
Confidence 3677889999999998887775544 79 9999999999999 11
Q ss_pred -ccccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+.. ..+.+|+|||+|.+. ....+.++..++.. +.++.+|++||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------~~~~~~l~~~l~~~----~~~~~~i~~t~ 164 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PEHVKFLLATT 164 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------HHHHHHHHHHHHSC----CTTEEEEEEES
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------HHHHHHHHHHHhcC----CCceEEEEEeC
Confidence 1111100 016899999999862 34556677777654 45789999999
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+++++.+ |+ ..++++.++.
T Consensus 165 ~~~~~~~~l~~--r~-~~i~l~~l~~ 187 (250)
T 1njg_A 165 DPQKLPVTILS--RC-LQFHLKALDV 187 (250)
T ss_dssp CGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred ChHhCCHHHHH--Hh-hhccCCCCCH
Confidence 99999999886 53 6888988887
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.39 E-value=8e-14 Score=104.59 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=78.1
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------ccccccc----------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------DLKEFQS---------- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~l~~v~~---------- 66 (170)
...|..|+++++.+...+.+...+ || ||||||++|+++| .+ +...+..
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAK 94 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCC
T ss_pred HHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCC
Confidence 345778999999888777766543 79 9999999999999 11 1111100
Q ss_pred -------------------cCceeEeeechhhhccCCc---cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----
Q 036857 67 -------------------NSRSILVIEDAVTSFESNA---YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD----- 119 (170)
Q Consensus 67 -------------------~~p~il~iDEiD~~~~~~~---~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~----- 119 (170)
+.+++|+|||+|.+...+. ......+.+...++ ...+++|+|||.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~------~~~~~ii~~~~~~~~~~~~ 168 (187)
T 2p65_A 95 YRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA------RGELRCIGATTVSEYRQFI 168 (187)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH------TTCSCEEEEECHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh------cCCeeEEEecCHHHHHHHH
Confidence 0168999999999974221 11222333333332 24678899999765
Q ss_pred CCCCCCCCCCccceEEEcCCCC
Q 036857 120 HIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 120 ~lD~AllRpgR~d~~i~~~~p~ 141 (170)
.+|+++.| ||+. |+++.|+
T Consensus 169 ~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 169 EKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TTCHHHHH--HEEE-EECCSCC
T ss_pred hccHHHHH--hcCc-ccCCCCC
Confidence 68999998 9995 9999886
No 47
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=1.5e-12 Score=106.32 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=85.0
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-------ccccc------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-------DLKEF------------ 64 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-------~l~~v------------ 64 (170)
++....|.+|+++++.+..++.+...+ || ||||||++|+++| .+ .+..+
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR 94 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH
Confidence 334678999999999999998886554 79 9999999999999 10 01000
Q ss_pred ------------cccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857 65 ------------QSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132 (170)
Q Consensus 65 ------------~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d 132 (170)
....+.++++||+|.+.. ...+.|+..++.. +.++.+|++||.++.+++++.+ |+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~ 162 (327)
T 1iqp_A 95 EKVKEFARTKPIGGASFKIIFLDEADALTQ------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA 162 (327)
T ss_dssp HHHHHHHHSCCGGGCSCEEEEEETGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE
T ss_pred HHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------HHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc
Confidence 002278999999998733 3456677777654 3578889999999999999886 665
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
.++|+.++.
T Consensus 163 -~~~~~~l~~ 171 (327)
T 1iqp_A 163 -IFRFRPLRD 171 (327)
T ss_dssp -EEECCCCCH
T ss_pred -EEEecCCCH
Confidence 788888776
No 48
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.34 E-value=1e-12 Score=110.81 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=41.0
Q ss_pred cc-CCCcHHHHHHHHH---c-----cccccccc-------------------------cCceeEeeechhhhccCCccc-
Q 036857 43 WG-PYTGKSSLIAAMA---D-----LDLKEFQS-------------------------NSRSILVIEDAVTSFESNAYN- 87 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~-----~~l~~v~~-------------------------~~p~il~iDEiD~~~~~~~~~- 87 (170)
+| ||||||++|+++| + ++...+.. ..++||||||+|.+...+...
T Consensus 57 ~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~ 136 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS 136 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc
Confidence 79 9999999999999 1 11111110 117899999999998743211
Q ss_pred -------hHHHHHHHHHhhch
Q 036857 88 -------SVALSALLKFVDGL 101 (170)
Q Consensus 88 -------~~~~~~ll~~lDg~ 101 (170)
....+.|+..|||.
T Consensus 137 ~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 137 ITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp --CHHHHHHHHHHHHHHHHCC
T ss_pred cccccchHHHHHHHHHHhcCc
Confidence 23788899999954
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.33 E-value=1.4e-12 Score=114.14 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCCCCcccccCChhhH---HHhhcCc----------cc-CCCcHHHHHHHHH---ccccccccc--------------
Q 036857 18 KFEHPATSNTIATDFDMN---KALVDDY----------WG-PYTGKSSLIAAMA---DLDLKEFQS-------------- 66 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k---~~l~~~~----------~G-PGtGKT~la~aiA---~~~l~~v~~-------------- 66 (170)
....|.+|+++++.+... ..+...+ || ||||||++|++|| ...+..+..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~ 97 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIER 97 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHH
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHH
Confidence 467889999999998887 3333222 89 9999999999999 111111110
Q ss_pred -------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC--CCCCCCCCCCCCCCccceEEEc
Q 036857 67 -------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT--DYKDHIDPVPLRPSCMDMHFHL 137 (170)
Q Consensus 67 -------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT--N~~~~lD~AllRpgR~d~~i~~ 137 (170)
..++||||||+|.+.. .....|+..++. ..+++|++| |....+++++++ |+. .+.|
T Consensus 98 a~~~~~~~~~~iLfIDEI~~l~~------~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l 162 (447)
T 3pvs_A 98 ARQNRNAGRRTILFVDEVHRFNK------SQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLL 162 (447)
T ss_dssp HHHHHHTTCCEEEEEETTTCC------------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEEC
T ss_pred HHHhhhcCCCcEEEEeChhhhCH------HHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEee
Confidence 1278999999998844 223456666664 245555555 566789999998 665 6778
Q ss_pred CCCCc
Q 036857 138 SSHTF 142 (170)
Q Consensus 138 ~~p~~ 142 (170)
..|+.
T Consensus 163 ~~l~~ 167 (447)
T 3pvs_A 163 KSLST 167 (447)
T ss_dssp CCCCH
T ss_pred CCcCH
Confidence 88876
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=4.5e-12 Score=104.88 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc--------cccccc-----------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL--------DLKEFQ----------- 65 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~--------~l~~v~----------- 65 (170)
+...+|.+|+++++.++.++.+...+ || ||||||++|+++| .+ .+..+.
T Consensus 28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 34678999999999999988876654 79 9999999999999 11 111110
Q ss_pred -----------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 66 -----------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 66 -----------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
...+.|||+||+|.+.. ...+.|+..++... ....+|++||+++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------DAQSALRRTMETYS----GVTRFCLICNYVTRII 177 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSC
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------HHHHHHHHHHHhcC----CCceEEEEeCchhhCc
Confidence 01145999999998743 33466777776652 4667778889999999
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+++.+ |+. .++|+.|+.
T Consensus 178 ~~l~s--R~~-~i~~~~~~~ 194 (353)
T 1sxj_D 178 DPLAS--QCS-KFRFKALDA 194 (353)
T ss_dssp HHHHH--HSE-EEECCCCCH
T ss_pred chhhc--cCc-eEEeCCCCH
Confidence 99987 775 788888776
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.33 E-value=2.2e-12 Score=105.33 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=50.3
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC-------CCeEEEEeCCC------------------------
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG-------DGRILVMTTDY------------------------ 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~-------~~~~vi~tTN~------------------------ 117 (170)
.++|||||+|.+. ....+.|+..|+.-..... .++++|+|||.
T Consensus 120 ~~vl~lDEi~~l~------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~ 193 (311)
T 4fcw_A 120 YSVILFDAIEKAH------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK 193 (311)
T ss_dssp SEEEEEETGGGSC------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred CeEEEEeChhhcC------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence 4899999999873 3556777887765431101 36789999998
Q ss_pred --CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 --KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 --~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
...++++|+. ||+..+.|..|+.
T Consensus 194 ~~~~~~~~~l~~--R~~~~~~~~p~~~ 218 (311)
T 4fcw_A 194 VLQQHFRPEFLN--RLDEIVVFRPLTK 218 (311)
T ss_dssp HHHHHSCHHHHT--TCSEEEECCCCCH
T ss_pred HHHHhCCHHHHh--cCCeEEEeCCCCH
Confidence 5578889985 9999999999987
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.29 E-value=2.7e-11 Score=94.33 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCCCCcccccCCh---hhHHHhhcCc----------cc-CCCcHHHHHHHHH-c-----ccc-----ccccc-------
Q 036857 19 FEHPATSNTIATDF---DMNKALVDDY----------WG-PYTGKSSLIAAMA-D-----LDL-----KEFQS------- 66 (170)
Q Consensus 19 ~~~p~~~~~v~~~~---~~k~~l~~~~----------~G-PGtGKT~la~aiA-~-----~~l-----~~v~~------- 66 (170)
+.++.+|++++..+ ...+.+...+ || ||||||++|+++| . ..+ ..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T 3bos_A 21 LPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLE 100 (242)
T ss_dssp CCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGT
T ss_pred CCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHH
Confidence 34447899988633 3333333221 79 9999999999999 1 111 11111
Q ss_pred --cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCe-EEEEeCCCCC---CCCCCCCCCCccc--eEEEcC
Q 036857 67 --NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGR-ILVMTTDYKD---HIDPVPLRPSCMD--MHFHLS 138 (170)
Q Consensus 67 --~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~-~vi~tTN~~~---~lD~AllRpgR~d--~~i~~~ 138 (170)
..+.+|+|||+|.+... ......++..++..... ... +|+.+++.++ .+++++.+ |+. ..++++
T Consensus 101 ~~~~~~vliiDe~~~~~~~----~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 101 GLEQFDLICIDDVDAVAGH----PLWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp TGGGSSEEEEETGGGGTTC----HHHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred hccCCCEEEEeccccccCC----HHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 12889999999987542 22244566666665442 233 4444444454 45677776 665 999999
Q ss_pred CCCc
Q 036857 139 SHTF 142 (170)
Q Consensus 139 ~p~~ 142 (170)
.|+.
T Consensus 173 ~~~~ 176 (242)
T 3bos_A 173 PMMD 176 (242)
T ss_dssp CCCG
T ss_pred CCCH
Confidence 9998
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.27 E-value=1.1e-11 Score=113.89 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=65.7
Q ss_pred cc-CCCcHHHHHHHHH-----------ccccccccc---------------cCceeEeeechhhhccCCccchHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA-----------DLDLKEFQS---------------NSRSILVIEDAVTSFESNAYNSVALSALL 95 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-----------~~~l~~v~~---------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll 95 (170)
|| ||||||++|+++| .++++.+.. ..++||||||+|.+ .....+.|+
T Consensus 527 ~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~------~~~~~~~Ll 600 (758)
T 3pxi_A 527 LGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKA------HPDVFNILL 600 (758)
T ss_dssp ESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGS------CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCcccc------CHHHHHHHH
Confidence 69 9999999999999 122222221 12689999999976 346678888
Q ss_pred HHhhchhc-------cCCCCeEEEEeCCCCCC------------CCCCCCCCCccceEEEcCCCCc
Q 036857 96 KFVDGLWS-------SSGDGRILVMTTDYKDH------------IDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 96 ~~lDg~~~-------~~~~~~~vi~tTN~~~~------------lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.||.-.- ....++++|+|||.... ++|+|+. |||..|.|+.|+.
T Consensus 601 ~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~ 664 (758)
T 3pxi_A 601 QVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEK 664 (758)
T ss_dssp HHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CH
T ss_pred HHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCH
Confidence 88875221 01246799999996554 7788875 9999999999998
No 54
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=7.8e-12 Score=112.86 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred ccccCChhhHHHhhcCc---------------------cc-CCCcHHHHHHHHHc-cc-----------cccc-----c-
Q 036857 26 NTIATDFDMNKALVDDY---------------------WG-PYTGKSSLIAAMAD-LD-----------LKEF-----Q- 65 (170)
Q Consensus 26 ~~v~~~~~~k~~l~~~~---------------------~G-PGtGKT~la~aiA~-~~-----------l~~v-----~- 65 (170)
..+.+++.+|+.+.-.+ +| ||||||++|+++|. .+ ...+ .
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 45677788877763221 69 99999999999991 10 0000 0
Q ss_pred --ccC------------ceeEeeechhhhccCCccchHHHHHHHHHhhc---------hhccCCCCeEEEEeCCCCC---
Q 036857 66 --SNS------------RSILVIEDAVTSFESNAYNSVALSALLKFVDG---------LWSSSGDGRILVMTTDYKD--- 119 (170)
Q Consensus 66 --~~~------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg---------~~~~~~~~~~vi~tTN~~~--- 119 (170)
... .+|+||||+|.+.. ...+.|++.|+. .....+.++.+|+|||+.+
T Consensus 375 ~~~g~~~~~~G~l~~A~~gil~IDEid~l~~------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~ 448 (595)
T 3f9v_A 375 KGTGEYYLEAGALVLADGGIAVIDEIDKMRD------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRY 448 (595)
T ss_dssp GGTSSCSEEECHHHHHSSSEECCTTTTCCCS------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCS
T ss_pred cccccccccCCeeEecCCCcEEeehhhhCCH------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCcc
Confidence 000 58999999998733 345667777763 2222245678999999887
Q ss_pred ----------CCCCCCCCCCccce-EEEcCCCCcc
Q 036857 120 ----------HIDPVPLRPSCMDM-HFHLSSHTFR 143 (170)
Q Consensus 120 ----------~lD~AllRpgR~d~-~i~~~~p~~~ 143 (170)
.+++|+++ |||. .+..++|+..
T Consensus 449 ~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e 481 (595)
T 3f9v_A 449 ISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ 481 (595)
T ss_dssp CTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH
T ss_pred CcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH
Confidence 99999998 9985 5555666543
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=4.2e-11 Score=99.71 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=83.9
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHH-cc-------------------------
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMA-DL------------------------- 59 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA-~~------------------------- 59 (170)
....|..|+++++.+...+.+...+ +| ||||||++|+++| .+
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCC
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCC
Confidence 3568889999999998888776554 69 9999999999999 11
Q ss_pred -ccccccc----------------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 60 -DLKEFQS----------------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 60 -~l~~v~~----------------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
++..+.. ..+.||+|||+|.+. ....+.|+..++.. +.++++|++||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------~~~~~~Ll~~le~~----~~~~~~Il~~~ 157 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------RHSFNALLKTLEEP----PEHVKFLLATT 157 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------HHHHHHHHHHHHSC----CSSEEEEEEES
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------HHHHHHHHHHHhcC----CCceEEEEEeC
Confidence 1111110 016799999999873 24456777777654 45888999999
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 117 YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 117 ~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.++.+++++.+ |+ ..++|+.|+.
T Consensus 158 ~~~~l~~~l~s--r~-~~i~~~~l~~ 180 (373)
T 1jr3_A 158 DPQKLPVTILS--RC-LQFHLKALDV 180 (373)
T ss_dssp CGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred ChHhCcHHHHh--he-eEeeCCCCCH
Confidence 99999999886 55 6889998887
No 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=1.3e-11 Score=100.62 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=83.5
Q ss_pred CCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------cccc----------
Q 036857 17 NKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLK---------- 62 (170)
Q Consensus 17 ~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~---------- 62 (170)
.....|..|+++++.+...+.+...+ || ||||||++|+++| . ++..
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRN 91 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHT
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHH
Confidence 34678899999999999988876554 79 9999999999998 1 1100
Q ss_pred ---ccc-------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857 63 ---EFQ-------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132 (170)
Q Consensus 63 ---~v~-------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d 132 (170)
.+. ...+.||+|||+|.+.. ...+.|+..++.. +.++.+|++||.++.+++++.+ |+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~ 159 (323)
T 1sxj_B 92 QIKHFAQKKLHLPPGKHKIVILDEADSMTA------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA 159 (323)
T ss_dssp HHHHHHHBCCCCCTTCCEEEEEESGGGSCH------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHHHHHhccccCCCCCceEEEEECcccCCH------HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce
Confidence 000 11278999999998743 2345566666553 3578888899999999999987 554
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
.++|+.|+.
T Consensus 160 -~i~~~~~~~ 168 (323)
T 1sxj_B 160 -ILRYSKLSD 168 (323)
T ss_dssp -EEECCCCCH
T ss_pred -EEeecCCCH
Confidence 899998887
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.24 E-value=1.6e-11 Score=112.66 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc-----------------cccccc-----
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL-----------------DLKEFQ----- 65 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~-----------------~l~~v~----- 65 (170)
..|..|+.+++.....+++...+ +| ||||||++|+++| .+ ++..+.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 34567999999988877776654 79 9999999999999 11 111111
Q ss_pred ----------------ccCceeEeeechhhhccCCcc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCC-----CCCC
Q 036857 66 ----------------SNSRSILVIEDAVTSFESNAY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYK-----DHID 122 (170)
Q Consensus 66 ----------------~~~p~il~iDEiD~~~~~~~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~-----~~lD 122 (170)
...++||||||+|.+++.+.. .... ..+.+..+.. ..++.+|++||.+ -.+|
T Consensus 260 ~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~---~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d 334 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_dssp SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH---HHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH---HHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcC
Confidence 011699999999999864332 1222 2233333333 3567888888854 3689
Q ss_pred CCCCCCCccceEEEcCCCCc
Q 036857 123 PVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 123 ~AllRpgR~d~~i~~~~p~~ 142 (170)
+++.| ||+ .+.++.|+.
T Consensus 335 ~aL~~--Rf~-~i~v~~p~~ 351 (758)
T 1r6b_X 335 RALAR--RFQ-KIDITEPSI 351 (758)
T ss_dssp TSSGG--GEE-EEECCCCCH
T ss_pred HHHHh--Cce-EEEcCCCCH
Confidence 99998 998 699999998
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.23 E-value=3.9e-11 Score=99.25 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=61.4
Q ss_pred cc-CCCcHHHHHHHHH-c-----cccccccc-----------------------cCceeEeeechhhhccCCccchHHHH
Q 036857 43 WG-PYTGKSSLIAAMA-D-----LDLKEFQS-----------------------NSRSILVIEDAVTSFESNAYNSVALS 92 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~-----~~l~~v~~-----------------------~~p~il~iDEiD~~~~~~~~~~~~~~ 92 (170)
|| ||||||++|++++ . ..+..+.. ..+++|||||+|.+... .....
T Consensus 43 ~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~----~~~~~ 118 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----ERTQI 118 (324)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----HHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC----hHHHH
Confidence 79 9999999999999 1 11111110 01789999999987542 12344
Q ss_pred HHHHHhhchhccCCCCeEEEEeCCCCC---CCCCCCCCCCccc--eEEEcCCCCc
Q 036857 93 ALLKFVDGLWSSSGDGRILVMTTDYKD---HIDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 93 ~ll~~lDg~~~~~~~~~~vi~tTN~~~---~lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
.++..++.... .+..++++++|.+. .+++++.+ ||+ ..++++. +.
T Consensus 119 ~l~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 119 EFFHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DN 168 (324)
T ss_dssp HHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CH
T ss_pred HHHHHHHHHHH--CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CH
Confidence 56666666544 23466666777666 68999986 886 7888888 55
No 59
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.23 E-value=1.8e-11 Score=108.62 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=72.1
Q ss_pred cccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH-cc-----------cc---ccccc---------c------
Q 036857 27 TIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA-DL-----------DL---KEFQS---------N------ 67 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA-~~-----------~l---~~v~~---------~------ 67 (170)
.+++.++.++.+...+ +| ||||||++|+++| .+ .+ ..+.. .
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~ 102 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERL 102 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBC
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhh
Confidence 4567777776665444 79 9999999999999 11 10 00000 0
Q ss_pred ------CceeEeeechhhhccCCccchHHHHHHHHHhhc-------hhccCCCCeEEEEeCCCCCC---CCCCCCCCCcc
Q 036857 68 ------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG-------LWSSSGDGRILVMTTDYKDH---IDPVPLRPSCM 131 (170)
Q Consensus 68 ------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg-------~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~ 131 (170)
.++|+|+|||+.+ .....+.|+..|+. .....+ ..++|+|||.... ..+|+++ ||
T Consensus 103 ~~g~l~~~~IL~IDEI~r~------~~~~q~~LL~~lee~~v~i~G~~~~~~-~~~iI~ATN~lpe~~~~~~aLld--RF 173 (500)
T 3nbx_X 103 TSGYLPEAEIVFLDEIWKA------GPAILNTLLTAINERQFRNGAHVEKIP-MRLLVAASNELPEADSSLEALYD--RM 173 (500)
T ss_dssp CTTSGGGCSEEEEESGGGC------CHHHHHHHHHHHHSSEEECSSSEEECC-CCEEEEEESSCCCTTCTTHHHHT--TC
T ss_pred hccCCCcceeeeHHhHhhh------cHHHHHHHHHHHHHHhccCCCCcCCcc-hhhhhhccccCCCccccHHHHHH--HH
Confidence 1568999999864 34567788888752 222212 3356788885322 3458887 99
Q ss_pred ceEEEcCCCCcchH
Q 036857 132 DMHFHLSSHTFRHY 145 (170)
Q Consensus 132 d~~i~~~~p~~~~~ 145 (170)
..++++++|+.+..
T Consensus 174 ~~~i~v~~p~~~ee 187 (500)
T 3nbx_X 174 LIRLWLDKVQDKAN 187 (500)
T ss_dssp CEEEECCSCCCHHH
T ss_pred HHHHHHHHhhhhhh
Confidence 99999999998443
No 60
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.2e-11 Score=105.36 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=74.5
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcC-------------------------c--cc-CCCcHHHHHHHHH--------cc
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDD-------------------------Y--WG-PYTGKSSLIAAMA--------DL 59 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~-------------------------~--~G-PGtGKT~la~aiA--------~~ 59 (170)
++....|.+|+++++.+..++++... + +| ||||||++|+++| .+
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34467899999999999887765432 1 79 9999999999999 11
Q ss_pred ccc----------------------ccc---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCC
Q 036857 60 DLK----------------------EFQ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDG 108 (170)
Q Consensus 60 ~l~----------------------~v~---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~ 108 (170)
+.+ .++ ...++||||||+|.+.... +..+..+++.++.. ...
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---~~~l~~L~~~l~~~----~~~ 181 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---RGGVGQLAQFCRKT----STP 181 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---TTHHHHHHHHHHHC----SSC
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---HHHHHHHHHHHHhc----CCC
Confidence 111 010 1237899999999987632 22345566655542 223
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 109 RILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 109 ~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+++++++.....+++ +. |+...++|+.|+.
T Consensus 182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~ 211 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDA 211 (516)
T ss_dssp EEEEESCTTSSTTGG-GT---TTSEEEECCCCCH
T ss_pred EEEEEcCCCCccchh-hH---hceEEEEeCCCCH
Confidence 333333333344543 43 5567999999988
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=6.9e-11 Score=98.22 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=85.0
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc-----------cc-CCCcHHHHHHHHHc-cc----------------------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY-----------WG-PYTGKSSLIAAMAD-LD---------------------- 60 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~-----------~G-PGtGKT~la~aiA~-~~---------------------- 60 (170)
++...+|.+|+++++++...+.+...+ +| ||||||++++++|. +.
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~ 83 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 83 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence 355789999999999999998887654 69 99999999999992 10
Q ss_pred ---------ccccc----------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHH
Q 036857 61 ---------LKEFQ----------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKF 97 (170)
Q Consensus 61 ---------l~~v~----------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~ 97 (170)
...+. ...|.|+++||+|.+- ....+.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------~~~~~~L~~~ 157 (354)
T 1sxj_E 84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------KDAQAALRRT 157 (354)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC------HHHHHHHHHH
T ss_pred eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC------HHHHHHHHHH
Confidence 00000 0124599999999852 2345667776
Q ss_pred hhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 98 VDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 98 lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++.. ..+..+|++||.++.+.+++.+ |+ ..++|+.|+.
T Consensus 158 le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~ 195 (354)
T 1sxj_E 158 MEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSD 195 (354)
T ss_dssp HHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCH
T ss_pred HHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCH
Confidence 6654 3478899999999999999986 66 7899999887
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.23 E-value=7.9e-12 Score=105.71 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=62.5
Q ss_pred cc-CCCcHHHHHHHHH---c-----ccccccc-------------------------ccCceeEeeechhhhccCCcc--
Q 036857 43 WG-PYTGKSSLIAAMA---D-----LDLKEFQ-------------------------SNSRSILVIEDAVTSFESNAY-- 86 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~-----~~l~~v~-------------------------~~~p~il~iDEiD~~~~~~~~-- 86 (170)
|| ||||||++|+++| . ++...+. ...++||||||+|.+...+..
T Consensus 78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 79 9999999999999 1 1111110 012789999999998763211
Q ss_pred ------chHHHHHHHHHhhchhc-----------------cCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 87 ------NSVALSALLKFVDGLWS-----------------SSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 87 ------~~~~~~~ll~~lDg~~~-----------------~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.....+.|+..||+... -...++++|+||| .+.+|+++.| ||+ ...+++|..
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~-~~~~g~~~~ 232 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTT-QNVLGFTQE 232 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCS-SCCCSCCCS
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhc-ccccCCCch
Confidence 11267888999986410 0014567888888 6889999998 887 455666553
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.22 E-value=1.3e-11 Score=115.18 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c-------cccccc-----
Q 036857 21 HPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D-------LKEFQS----- 66 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~-------l~~v~~----- 66 (170)
.|..|+.+++.++..+++...+ +| ||||||++|+++| .+ + +..+..
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred hcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 4678999999988887776644 79 9999999999999 11 1 111110
Q ss_pred -----------------cCceeEeeechhhhccCCccc--hHHHHHHHHHhhchhccCCCCeEEEEeCCCCC----CCCC
Q 036857 67 -----------------NSRSILVIEDAVTSFESNAYN--SVALSALLKFVDGLWSSSGDGRILVMTTDYKD----HIDP 123 (170)
Q Consensus 67 -----------------~~p~il~iDEiD~~~~~~~~~--~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~----~lD~ 123 (170)
..|+||||||+|.+.+..... ....+.+...++ ..++.+|+|||..+ .+|+
T Consensus 245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~ 318 (854)
T 1qvr_A 245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA------RGELRLIGATTLDEYREIEKDP 318 (854)
T ss_dssp -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH------TTCCCEEEEECHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh------CCCeEEEEecCchHHhhhccCH
Confidence 127899999999997532211 222233333332 24677888888665 5899
Q ss_pred CCCCCCccceEEEcCCCCc
Q 036857 124 VPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 124 AllRpgR~d~~i~~~~p~~ 142 (170)
++.| ||+. |.++.|+.
T Consensus 319 aL~r--Rf~~-i~l~~p~~ 334 (854)
T 1qvr_A 319 ALER--RFQP-VYVDEPTV 334 (854)
T ss_dssp TTCS--CCCC-EEECCCCH
T ss_pred HHHh--CCce-EEeCCCCH
Confidence 9999 9996 99999997
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=3.2e-11 Score=100.26 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred cccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-cc---------cccc--cc------------
Q 036857 25 SNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DL---------DLKE--FQ------------ 65 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~---------~l~~--v~------------ 65 (170)
.+++++.+...+++...+ || ||||||++|++++ .+ +... +.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 477888888877776544 79 9999999999998 11 2111 10
Q ss_pred ------------------------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 66 ------------------------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 66 ------------------------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
...|++|||||+|.+.... .....+..+++.++.... +.++.+|+||
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-~~~~~l~~l~~~~~~~~~--~~~~~~I~~t 174 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-GGQDLLYRITRINQELGD--RVWVSLVGIT 174 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-THHHHHHHHHHGGGCC-------CEEEEEC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-CCChHHHhHhhchhhcCC--CceEEEEEEE
Confidence 0117799999999986522 133445555555544320 2478899999
Q ss_pred CCC---CCCCCCCCCCCccce-EEEcCCCCc
Q 036857 116 DYK---DHIDPVPLRPSCMDM-HFHLSSHTF 142 (170)
Q Consensus 116 N~~---~~lD~AllRpgR~d~-~i~~~~p~~ 142 (170)
|.+ +.+++++.+ ||.. .++|+.++.
T Consensus 175 ~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~ 203 (387)
T 2v1u_A 175 NSLGFVENLEPRVKS--SLGEVELVFPPYTA 203 (387)
T ss_dssp SCSTTSSSSCHHHHT--TTTSEECCBCCCCH
T ss_pred CCCchHhhhCHHHHh--cCCCeEEeeCCCCH
Confidence 987 788999987 8875 899998886
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.20 E-value=4.1e-11 Score=109.93 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=66.8
Q ss_pred cc-CCCcHHHHHHHHH--------ccccccccc-----------------------------cCceeEeeechhhhccCC
Q 036857 43 WG-PYTGKSSLIAAMA--------DLDLKEFQS-----------------------------NSRSILVIEDAVTSFESN 84 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA--------~~~l~~v~~-----------------------------~~p~il~iDEiD~~~~~~ 84 (170)
+| ||||||++|+++| .++++.+.. ..++||||||+|.+
T Consensus 494 ~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~---- 569 (758)
T 1r6b_X 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---- 569 (758)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS----
T ss_pred ECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc----
Confidence 79 9999999999999 122222111 11689999999976
Q ss_pred ccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCCCC-------------------------CCCCCCCCCCccc
Q 036857 85 AYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDYKD-------------------------HIDPVPLRPSCMD 132 (170)
Q Consensus 85 ~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~~~-------------------------~lD~AllRpgR~d 132 (170)
.....+.|++.||.-.-. . -.++++|+|||... .++|+|+. |||
T Consensus 570 --~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~ 645 (758)
T 1r6b_X 570 --HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLD 645 (758)
T ss_dssp --CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCS
T ss_pred --CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCC
Confidence 345778888888742110 0 13688999999743 57788885 999
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
..|.|+.|+.
T Consensus 646 ~~i~~~~l~~ 655 (758)
T 1r6b_X 646 NIIWFDHLST 655 (758)
T ss_dssp EEEECCCCCH
T ss_pred cceeeCCCCH
Confidence 9999999998
No 66
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=5e-11 Score=99.50 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=83.1
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-c------------ccccc--------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-D------------LDLKE-------- 63 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~------------~~l~~-------- 63 (170)
++....|..|+++++++.+.+.+...+ || ||||||++|+++| . ++.+.
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir 94 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR 94 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH
Confidence 344678999999999998888776544 79 9999999999999 1 11110
Q ss_pred -----cc------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccc
Q 036857 64 -----FQ------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMD 132 (170)
Q Consensus 64 -----v~------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d 132 (170)
+. ...+.|+++||+|.+.. ...+.|+..++.. +....+|++||.++.+.+++.+ |+.
T Consensus 95 ~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~ 162 (340)
T 1sxj_C 95 NQIKDFASTRQIFSKGFKLIILDEADAMTN------AAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QCT 162 (340)
T ss_dssp THHHHHHHBCCSSSCSCEEEEETTGGGSCH------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHHHHHHhhcccCCCCceEEEEeCCCCCCH------HHHHHHHHHHhcC----CCCeEEEEEecCccccchhHHh--hce
Confidence 00 11268999999998743 3355677766654 3467788889999999999987 664
Q ss_pred eEEEcCCCCc
Q 036857 133 MHFHLSSHTF 142 (170)
Q Consensus 133 ~~i~~~~p~~ 142 (170)
.++|..++.
T Consensus 163 -~~~~~~l~~ 171 (340)
T 1sxj_C 163 -RFRFQPLPQ 171 (340)
T ss_dssp -EEECCCCCH
T ss_pred -eEeccCCCH
Confidence 678877665
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.13 E-value=3.4e-10 Score=94.69 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=79.4
Q ss_pred cCCCCCCCCcccccCChhhHHHhhc-------------Cc--cc-CCCcHHHHHHHHH-cc--cccc----cc-------
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVD-------------DY--WG-PYTGKSSLIAAMA-DL--DLKE----FQ------- 65 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~-------------~~--~G-PGtGKT~la~aiA-~~--~l~~----v~------- 65 (170)
++....|..|++.++.+.+++.+.. .+ || ||||||++++++| .+ .+.. +.
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 4678899999999998877655431 12 79 9999999999999 11 1110 00
Q ss_pred -----ccCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------cc-------CCCCeEEEEeCCCCCCCCCCCC
Q 036857 66 -----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SS-------SGDGRILVMTTDYKDHIDPVPL 126 (170)
Q Consensus 66 -----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~-------~~~~~~vi~tTN~~~~lD~All 126 (170)
...+.|+|+||++.+.. .....++..+.... .. .-..+.++.+||+++.|+++++
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~ 168 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH
T ss_pred HHHHHccCCCEEEEcchhhcCH------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHH
Confidence 11268999999998753 12233333332110 00 0123567789999999999999
Q ss_pred CCCccceEEEcCCCCc
Q 036857 127 RPSCMDMHFHLSSHTF 142 (170)
Q Consensus 127 RpgR~d~~i~~~~p~~ 142 (170)
+ ||...+.++.++.
T Consensus 169 s--R~~l~~~Ld~~~~ 182 (334)
T 1in4_A 169 S--RFGIILELDFYTV 182 (334)
T ss_dssp T--TCSEEEECCCCCH
T ss_pred H--hcCceeeCCCCCH
Confidence 7 9999999999988
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.13 E-value=3.5e-11 Score=105.38 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c--ccccc---------
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D--LKEFQ--------- 65 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~--l~~v~--------- 65 (170)
...|..|+.+++.....+++...+ +| ||||||++|+++| .+ + +..+.
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 252 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchH
Confidence 345778999999999888776655 79 9999999999999 11 1 11111
Q ss_pred ------------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCCC
Q 036857 66 ------------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLRP 128 (170)
Q Consensus 66 ------------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllRp 128 (170)
...++|||+| . .....+.|+..|+ ...+.+|+|||..+ .+|+++.|
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD------~----~~~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~- 315 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFID------A----AIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER- 315 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC------C------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH-
T ss_pred HHHHHHHHHHHHhcCCeEEEEe------C----chhHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH-
Confidence 0117899999 1 1112233333332 24789999999888 79999998
Q ss_pred CccceEEEcCCCCc
Q 036857 129 SCMDMHFHLSSHTF 142 (170)
Q Consensus 129 gR~d~~i~~~~p~~ 142 (170)
||.. |.++.|+.
T Consensus 316 -Rf~~-i~v~~p~~ 327 (468)
T 3pxg_A 316 -RFQP-IQVDQPSV 327 (468)
T ss_dssp -SEEE-EECCCCCH
T ss_pred -hCcc-ceeCCCCH
Confidence 9985 99999988
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.11 E-value=1.4e-10 Score=93.21 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH-c----------cccccc---------cc---
Q 036857 23 ATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA-D----------LDLKEF---------QS--- 66 (170)
Q Consensus 23 ~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA-~----------~~l~~v---------~~--- 66 (170)
.+|+++++.....+++...+ || ||||||++|++++ . ++...+ +.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~ 82 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA 82 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcc
Confidence 36778887776665554332 79 9999999999999 1 111111 00
Q ss_pred ----------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCCC-----
Q 036857 67 ----------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDYK----- 118 (170)
Q Consensus 67 ----------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~~----- 118 (170)
..+.+|||||+|.+.. .....|+..++... .....++.+|+|||..
T Consensus 83 ~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~ 156 (265)
T 2bjv_A 83 GAFTGAQKRHPGRFERADGGTLFLDELATAPM------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (265)
T ss_dssp --------CCCCHHHHTTTSEEEEESGGGSCH------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred cccccccccccchhhhcCCcEEEEechHhcCH------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence 1157999999998743 34456666666321 0012467899999974
Q ss_pred --CCCCCCCCCCCccc-eEEEcCCCCc
Q 036857 119 --DHIDPVPLRPSCMD-MHFHLSSHTF 142 (170)
Q Consensus 119 --~~lD~AllRpgR~d-~~i~~~~p~~ 142 (170)
..+++++.+ ||. ..|+++....
T Consensus 157 ~~~~~~~~L~~--Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 157 NEGTFRADLLD--ALAFDVVQLPPLRE 181 (265)
T ss_dssp HHTSSCHHHHH--HHCSEEEECCCGGG
T ss_pred HcCCccHHHHH--hhcCcEEeCCChhh
Confidence 346777875 886 4566655444
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.09 E-value=7e-11 Score=108.63 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCCCCcccccCChhhHHHhhcCc----------cc-CCCcHHHHHHHHH-cc----------c--cccc-----------
Q 036857 20 EHPATSNTIATDFDMNKALVDDY----------WG-PYTGKSSLIAAMA-DL----------D--LKEF----------- 64 (170)
Q Consensus 20 ~~p~~~~~v~~~~~~k~~l~~~~----------~G-PGtGKT~la~aiA-~~----------~--l~~v----------- 64 (170)
..|..++.+++.+...+++...+ || ||||||++|+++| .+ + +..+
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e 253 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE 253 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------C
T ss_pred HhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHH
Confidence 45677999999999988887665 79 9999999999999 11 1 1100
Q ss_pred ----------cccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC-----CCCCCCCCCC
Q 036857 65 ----------QSNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD-----HIDPVPLRPS 129 (170)
Q Consensus 65 ----------~~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~-----~lD~AllRpg 129 (170)
....++||||| . .....+.++..|+ ..++.+|+|||..+ .+|+|+.|
T Consensus 254 ~~l~~~~~~~~~~~~~iLfiD------~----~~~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r-- 315 (758)
T 3pxi_A 254 DRLKKVMDEIRQAGNIILFID------A----AIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER-- 315 (758)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC------C------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--
T ss_pred HHHHHHHHHHHhcCCEEEEEc------C----chhHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--
Confidence 00118999999 1 1112233333333 25789999999988 79999999
Q ss_pred ccceEEEcCCCCc
Q 036857 130 CMDMHFHLSSHTF 142 (170)
Q Consensus 130 R~d~~i~~~~p~~ 142 (170)
||. .|+++.|+.
T Consensus 316 Rf~-~i~v~~p~~ 327 (758)
T 3pxi_A 316 RFQ-PIQVDQPSV 327 (758)
T ss_dssp SEE-EEECCCCCH
T ss_pred hCc-EEEeCCCCH
Confidence 995 599999988
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=5.6e-10 Score=92.52 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=77.0
Q ss_pred CcccccCChhhHHHhhcCc--------------cc-CCCcHHHHHHHHH-cc------cccc--cc--------------
Q 036857 24 TSNTIATDFDMNKALVDDY--------------WG-PYTGKSSLIAAMA-DL------DLKE--FQ-------------- 65 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~--------------~G-PGtGKT~la~aiA-~~------~l~~--v~-------------- 65 (170)
..+++++.+...+.+...+ +| ||||||+++++++ .+ +... +.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 3477888887777765544 69 9999999999998 11 1111 00
Q ss_pred --------------c--------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 66 --------------S--------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 66 --------------~--------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
. ..|+||+|||+|.+.... ....+..++..++... ..++.+|++||.
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~--~~~~l~~l~~~~~~~~---~~~~~~I~~~~~ 172 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY--NDDILYKLSRINSEVN---KSKISFIGITND 172 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS--CSTHHHHHHHHHHSCC---C--EEEEEEESC
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC--cCHHHHHHhhchhhcC---CCeEEEEEEECC
Confidence 0 017899999999987532 1345667777776552 357888999987
Q ss_pred C---CCCCCCCCCCCccc-eEEEcCCCCc
Q 036857 118 K---DHIDPVPLRPSCMD-MHFHLSSHTF 142 (170)
Q Consensus 118 ~---~~lD~AllRpgR~d-~~i~~~~p~~ 142 (170)
+ +.+++++.+ |+. ..++++.++.
T Consensus 173 ~~~~~~~~~~~~~--r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 173 VKFVDLLDPRVKS--SLSEEEIIFPPYNA 199 (386)
T ss_dssp GGGGGGCTTHHHH--TTTTEEEEECCCCH
T ss_pred CChHhhhCHHHhc--cCCCeeEEeCCCCH
Confidence 7 578888876 665 4899998887
No 72
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.04 E-value=3.7e-10 Score=83.60 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=45.0
Q ss_pred cc-CCCcHHHHHHHHHc------ccccccccc---------------CceeEeeechhhhccCCccchHHHHHHHHHhhc
Q 036857 43 WG-PYTGKSSLIAAMAD------LDLKEFQSN---------------SRSILVIEDAVTSFESNAYNSVALSALLKFVDG 100 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~------~~l~~v~~~---------------~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg 100 (170)
|| ||||||++|++++. ..+. +... ..++|||||+|.+.. .....++..|..
T Consensus 30 ~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a~~g~l~ldei~~l~~------~~q~~Ll~~l~~ 102 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTR------EQQYHLVQLQSQ 102 (145)
T ss_dssp ESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHHTTSCEEEECGGGSCH------HHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHcCCcEEEEcChHHCCH------HHHHHHHHHHhh
Confidence 79 99999999999991 1222 2111 178999999998743 345567777743
Q ss_pred hhccCCCCeEEEEeCCCC
Q 036857 101 LWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 101 ~~~~~~~~~~vi~tTN~~ 118 (170)
. ..++.+|+|||..
T Consensus 103 ~----~~~~~~I~~t~~~ 116 (145)
T 3n70_A 103 E----HRPFRLIGIGDTS 116 (145)
T ss_dssp S----SCSSCEEEEESSC
T ss_pred c----CCCEEEEEECCcC
Confidence 3 3467788888863
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.04 E-value=1.5e-10 Score=85.62 Aligned_cols=67 Identities=6% Similarity=-0.040 Sum_probs=45.6
Q ss_pred cc-CCCcHHHHHHHHH-cc-ccccccc--------------cCceeEeeechhhhccCCccchHHHHHHHHHhhchhccC
Q 036857 43 WG-PYTGKSSLIAAMA-DL-DLKEFQS--------------NSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSS 105 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~-~l~~v~~--------------~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~ 105 (170)
|| ||||||++|++++ .. .+..+.. ..+.+|||||+|.+.. .....++..++...
T Consensus 33 ~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~------~~q~~Ll~~l~~~~--- 103 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR------NIQTGITFIIGKAE--- 103 (143)
T ss_dssp EEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCH------HHHHHHHHHHHHHT---
T ss_pred ECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCH------HHHHHHHHHHHhCC---
Confidence 79 9999999999999 21 1222211 1168999999998743 33455666666543
Q ss_pred CCCeEEEEeCCCC
Q 036857 106 GDGRILVMTTDYK 118 (170)
Q Consensus 106 ~~~~~vi~tTN~~ 118 (170)
..++.+|+|||..
T Consensus 104 ~~~~~iI~~tn~~ 116 (143)
T 3co5_A 104 RCRVRVIASCSYA 116 (143)
T ss_dssp TTTCEEEEEEEEC
T ss_pred CCCEEEEEecCCC
Confidence 3578889999854
No 74
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=3.3e-10 Score=94.63 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=44.7
Q ss_pred ceeEeeechhhhccCCccchHH-HHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVA-LSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~-~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
++||+|||+|.+.... .... +..++... .++.+|+|||.. +.+++++.+ ||...++|+.++.
T Consensus 134 ~~vlilDEi~~l~~~~--~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~ 199 (384)
T 2qby_B 134 RAIIYLDEVDTLVKRR--GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDA 199 (384)
T ss_dssp CEEEEEETTHHHHHST--TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCH
T ss_pred CCEEEEECHHHhccCC--CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCH
Confidence 3499999999986532 1222 33333322 478899999977 788999886 8877999999877
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=6e-10 Score=96.93 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=61.5
Q ss_pred cc-CCCcHHHHHHHHH-cc-----c--ccccc-----------------------cc-CceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMA-DL-----D--LKEFQ-----------------------SN-SRSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~-----~--l~~v~-----------------------~~-~p~il~iDEiD~~~~~~~~~~~ 89 (170)
|| ||||||++|+++| .+ + +..+. .. .+.||||||+|.+... ..
T Consensus 136 ~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----~~ 211 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----TG 211 (440)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----HH
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----hH
Confidence 89 9999999999999 11 1 11000 01 4789999999988652 13
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCCCC---CCCCCCCCCccc--eEEEcCCCCc
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDH---IDPVPLRPSCMD--MHFHLSSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~---lD~AllRpgR~d--~~i~~~~p~~ 142 (170)
....++..++.+.. .+..+++.|.|.+.. +++++++ ||+ ..++++.|+.
T Consensus 212 ~q~~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 212 VQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDE 265 (440)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCH
T ss_pred HHHHHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCH
Confidence 34556666666554 234455544455554 8899987 786 8899999988
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=7.2e-10 Score=92.42 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=48.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC---CCCCCCCCCCCccce-EEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK---DHIDPVPLRPSCMDM-HFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~---~~lD~AllRpgR~d~-~i~~~~p~~ 142 (170)
|.||+|||+|.+ ....+..|+..++........++.+|++||.+ +.+++.+.+ |+.. .++|+.++.
T Consensus 126 ~~vlilDE~~~l------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 126 YMFLVLDDAFNL------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTK 195 (389)
T ss_dssp CEEEEEETGGGS------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBH
T ss_pred eEEEEEECcccc------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCH
Confidence 779999999987 23556667777765532111478899999988 678888776 7775 889988877
No 77
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.98 E-value=2.7e-10 Score=102.59 Aligned_cols=40 Identities=25% Similarity=0.125 Sum_probs=34.3
Q ss_pred CCCCCCCcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 18 KFEHPATSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 18 ~~~~p~~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
...+|..|+++++...+.+.+...+ +| ||||||++|+++|
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred ccccccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 3566788999999999888776555 79 9999999999999
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.95 E-value=3.2e-09 Score=87.99 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=40.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCCC-------CCCCCCCCCCCccc-e
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDYK-------DHIDPVPLRPSCMD-M 133 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~~-------~~lD~AllRpgR~d-~ 133 (170)
.++|||||+|.+.. .....|+..++... .....++.+|+|||.. ..+++.|.. ||. .
T Consensus 97 ~g~L~LDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~ 168 (304)
T 1ojl_A 97 GGTLFLDEIGDISP------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVV 168 (304)
T ss_dssp TSEEEEESCTTCCH------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSE
T ss_pred CCEEEEeccccCCH------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCee
Confidence 57999999998743 34556777776432 0112367899999975 234555554 664 4
Q ss_pred EEEcCCCCc
Q 036857 134 HFHLSSHTF 142 (170)
Q Consensus 134 ~i~~~~p~~ 142 (170)
.|++|....
T Consensus 169 ~i~lPpL~e 177 (304)
T 1ojl_A 169 AIEMPSLRQ 177 (304)
T ss_dssp EEECCCSGG
T ss_pred EEeccCHHH
Confidence 466655443
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.94 E-value=3.4e-09 Score=88.61 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=48.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+.|++|||+|.+. ....+.|+..++.- +.++++|++||.++.+++++++ |+ ..++|+.|+.
T Consensus 109 ~kvviIdead~l~------~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~ 169 (334)
T 1a5t_A 109 AKVVWVTDAALLT------DAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPE 169 (334)
T ss_dssp CEEEEESCGGGBC------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred cEEEEECchhhcC------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCH
Confidence 6899999999873 24467788887653 4578899999999999999997 55 3699988887
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=4.1e-09 Score=107.94 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=46.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhh--chhccCC------CCeEEEEeCCCCC-----CCCCCCCCCCccceEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVD--GLWSSSG------DGRILVMTTDYKD-----HIDPVPLRPSCMDMHF 135 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--g~~~~~~------~~~~vi~tTN~~~-----~lD~AllRpgR~d~~i 135 (170)
++|+|+||+|....+.-..+.....+...+| |...... .++.+|+|||++. .||++++| || ..|
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 4799999999654432222222222223333 3332111 2578999999994 89999999 88 779
Q ss_pred EcCCCCc
Q 036857 136 HLSSHTF 142 (170)
Q Consensus 136 ~~~~p~~ 142 (170)
.++.|+.
T Consensus 1414 ~i~~P~~ 1420 (2695)
T 4akg_A 1414 YLGYPSG 1420 (2695)
T ss_dssp ECCCCTT
T ss_pred EeCCCCH
Confidence 9999998
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=2.1e-09 Score=81.51 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=43.3
Q ss_pred cc-CCCcHHHHHHHHH-c----cccc-------ccc------------------ccCceeEeeechhhhccCCccchHHH
Q 036857 43 WG-PYTGKSSLIAAMA-D----LDLK-------EFQ------------------SNSRSILVIEDAVTSFESNAYNSVAL 91 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~----~~l~-------~v~------------------~~~p~il~iDEiD~~~~~~~~~~~~~ 91 (170)
|| ||||||+++++++ . .+.. .+. ...|.+|+|||++.... .....
T Consensus 44 ~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~----~~~~~ 119 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL----SDWQR 119 (180)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC----CHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC----CHHHH
Confidence 69 9999999999999 1 1110 000 01189999999985422 22233
Q ss_pred HHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 92 SALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 92 ~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
..+.+.++.... .+..+|+|||.+.
T Consensus 120 ~~l~~ll~~~~~---~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 120 ELISYIITYRYN---NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHH---TTCEEEEECCCCS
T ss_pred HHHHHHHHHHHH---cCCCEEEEcCCCh
Confidence 445555555543 3677888888654
No 82
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.1e-09 Score=92.21 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=44.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC----CCCCCCCCccc-eEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI----DPVPLRPSCMD-MHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l----D~AllRpgR~d-~~i~~~~p~~ 142 (170)
++|+++||+|.+. .+..+-.+++.... ....+++|+++|..+.. ++++. .|+. ..|+|+.++.
T Consensus 133 ~~ii~lDE~d~l~-----~q~~L~~l~~~~~~----~~s~~~vI~i~n~~d~~~~~L~~~v~--SR~~~~~i~F~pYt~ 200 (318)
T 3te6_A 133 KTLILIQNPENLL-----SEKILQYFEKWISS----KNSKLSIICVGGHNVTIREQINIMPS--LKAHFTEIKLNKVDK 200 (318)
T ss_dssp EEEEEEECCSSSC-----CTHHHHHHHHHHHC----SSCCEEEEEECCSSCCCHHHHHTCHH--HHTTEEEEECCCCCH
T ss_pred ceEEEEecHHHhh-----cchHHHHHHhcccc----cCCcEEEEEEecCcccchhhcchhhh--ccCCceEEEeCCCCH
Confidence 7899999999997 23445555543221 13578999999988754 45555 3887 5899988877
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=2e-09 Score=100.35 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=47.9
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhcc-C------CCCeEEEEeCCC------------------------
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSS-S------GDGRILVMTTDY------------------------ 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~-~------~~~~~vi~tTN~------------------------ 117 (170)
+++|||||+|.+ .....+.|+..||.-.-. . -.++++|+|||.
T Consensus 661 ~~vl~lDEi~~l------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~ 734 (854)
T 1qvr_A 661 YSVILFDEIEKA------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFK 734 (854)
T ss_dssp SEEEEESSGGGS------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CeEEEEeccccc------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHH
Confidence 689999999976 346778888888843210 0 136789999997
Q ss_pred --CCCCCCCCCCCCccceEEEcCCCCc
Q 036857 118 --KDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 118 --~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
...+.|+|+ +|||..+.|..|+.
T Consensus 735 ~~~~~f~~~l~--~Rl~~~i~~~pl~~ 759 (854)
T 1qvr_A 735 VLQQHFRPEFL--NRLDEIVVFRPLTK 759 (854)
T ss_dssp HHHTTSCHHHH--HTCSBCCBCCCCCH
T ss_pred HHHhhCCHHHH--HhcCeEEeCCCCCH
Confidence 234566666 59999999988876
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=6.8e-09 Score=86.48 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=63.8
Q ss_pred cc-CCCcHHHHHHHHH-c--------ccccccccc--C---------------------ceeEeeechhhhccCCccchH
Q 036857 43 WG-PYTGKSSLIAAMA-D--------LDLKEFQSN--S---------------------RSILVIEDAVTSFESNAYNSV 89 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~--------~~l~~v~~~--~---------------------p~il~iDEiD~~~~~~~~~~~ 89 (170)
|| ||||||++|+++| . .++..+... . ..|+|+||+|.+. ..
T Consensus 24 ~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------~~ 97 (305)
T 2gno_A 24 NGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------QQ 97 (305)
T ss_dssp ECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------HH
T ss_pred ECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------HH
Confidence 79 9999999999998 2 133222211 0 4799999999873 34
Q ss_pred HHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 90 ALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 90 ~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..+.|+..|+.- +...++|++||.++.|.|++.. | .++|..|+.
T Consensus 98 a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~ 141 (305)
T 2gno_A 98 AANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVP 141 (305)
T ss_dssp HHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCC
T ss_pred HHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCH
Confidence 467788888753 4578888888889999999986 6 788888777
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.63 E-value=1.7e-08 Score=86.60 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=62.3
Q ss_pred cc-CCCcHHHHHHHHHc---ccccccc---cc---------CceeEeeechhhhcc-CCc----cchHHHHHHHHHhhch
Q 036857 43 WG-PYTGKSSLIAAMAD---LDLKEFQ---SN---------SRSILVIEDAVTSFE-SNA----YNSVALSALLKFVDGL 101 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~---~~l~~v~---~~---------~p~il~iDEiD~~~~-~~~----~~~~~~~~ll~~lDg~ 101 (170)
+| ||+|||++++++++ -.+..+. .. ..+++|+||++.+.. .++ ......+.+.+.+||.
T Consensus 175 ~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~ 254 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGS 254 (377)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCS
T ss_pred ECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchHHHHHHHHhcCC
Confidence 69 99999999999991 1110000 11 156789999998875 111 1111235566667763
Q ss_pred hccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCC
Q 036857 102 WSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHT 141 (170)
Q Consensus 102 ~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~ 141 (170)
+.++++||+++.+ ++++||||+|..+...++.
T Consensus 255 -------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~ 286 (377)
T 1svm_A 255 -------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKT 286 (377)
T ss_dssp -------SCEEECCSSSCCE-EECCCCEEEEECSCCCCHH
T ss_pred -------CeEeeccCchhhH-HHhhcCcccChhHHhhcHH
Confidence 4578899999999 7999999999988776643
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.52 E-value=8.6e-08 Score=73.57 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||||||++|++++
T Consensus 60 ~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIA 75 (202)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 79 9999999999999
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.47 E-value=1.4e-07 Score=79.18 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=43.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC--CCeEEEEeCCCCC---CCC---CCCCCCCccceEEEcCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG--DGRILVMTTDYKD---HID---PVPLRPSCMDMHFHLSSH 140 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~--~~~~vi~tTN~~~---~lD---~AllRpgR~d~~i~~~~p 140 (170)
|.||+|||+|.+..........+..++..++..... + .++.+|+|||.++ .++ +.+.+ |+...++++.+
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l 215 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR-DGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAY 215 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT-TSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCC
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC-CCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCC
Confidence 779999999998652112334455555555543210 2 4788888888665 334 55544 45555888887
Q ss_pred Cc
Q 036857 141 TF 142 (170)
Q Consensus 141 ~~ 142 (170)
+.
T Consensus 216 ~~ 217 (412)
T 1w5s_A 216 KS 217 (412)
T ss_dssp CH
T ss_pred CH
Confidence 77
No 88
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.43 E-value=1.2e-07 Score=74.51 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=47.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+||+|||++.+++.+..... ...++..+..-. ..+.-+|++|++++.||.++.+ |++.++++..|..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e-~~rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSK-IPENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCC-CCHHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ceEEEEEChhhhccCccccch-hHHHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 789999999998763321111 123455554322 3466778888889999999775 9999999988655
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.35 E-value=2.9e-07 Score=91.34 Aligned_cols=48 Identities=8% Similarity=0.167 Sum_probs=35.9
Q ss_pred ceeEeeechhhhccCC-----------ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 69 RSILVIEDAVTSFESN-----------AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 69 p~il~iDEiD~~~~~~-----------~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
||++|+|++|++++.+ +-..+.++++|..||++.. ..+++|| +||+.-
T Consensus 1161 ~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1161 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQIR 1219 (1706)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEECEE
T ss_pred CeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eecccc
Confidence 9999999999998831 1123468999999999876 3566666 777553
No 90
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.31 E-value=6.4e-07 Score=75.70 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=53.5
Q ss_pred cc-CCCcHHHHHHHHH-c--cc--cccc--------cccC--------------ceeEeeechhhhccCCcc------ch
Q 036857 43 WG-PYTGKSSLIAAMA-D--LD--LKEF--------QSNS--------------RSILVIEDAVTSFESNAY------NS 88 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~--~~--l~~v--------~~~~--------------p~il~iDEiD~~~~~~~~------~~ 88 (170)
+| ||||||++|.++| . .. +..+ .... ..+|+||+++.+...... ..
T Consensus 129 ~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~ 208 (331)
T 2vhj_A 129 TGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGIS 208 (331)
T ss_dssp ECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-----------CC
T ss_pred EcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEecccccccccccccccchHH
Confidence 79 9999999999999 1 11 1111 0000 229999999998652221 14
Q ss_pred HHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCCCCC
Q 036857 89 VALSALLKFVDGLWSSSGDGRILVMTTDYKDHIDPVP 125 (170)
Q Consensus 89 ~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD~Al 125 (170)
+.+++++..|+++.. ..++.+|++|| +...|+++
T Consensus 209 ~~lrqlL~~L~~~~k--~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 209 RGAFDLLSDIGAMAA--SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHHHHHHH--HHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHHHHHh--hCCCEEEEEeC-CcccchhH
Confidence 567888888888765 35788899988 67788875
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.29 E-value=6.8e-07 Score=66.68 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=43.2
Q ss_pred cc-CCCcHHHHHHHHHc----cc--ccccc---------ccCceeEeeechhhhccCCccchHHHHHHHHHhhchhccCC
Q 036857 43 WG-PYTGKSSLIAAMAD----LD--LKEFQ---------SNSRSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSG 106 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~----~~--l~~v~---------~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~ 106 (170)
|| +|+|||+++++++. .+ ...+. ...+.+|++||++.+... . ...+.+.++.....
T Consensus 42 ~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~~~~---~---~~~l~~li~~~~~~-- 113 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNE---E---QALLFSIFNRFRNS-- 113 (149)
T ss_dssp ESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCCCSH---H---HHHHHHHHHHHHHH--
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCccccChH---H---HHHHHHHHHHHHHc--
Confidence 79 99999999999991 11 11111 123889999999875331 1 34455555555542
Q ss_pred CCeEEEEeCC-CCCCCC
Q 036857 107 DGRILVMTTD-YKDHID 122 (170)
Q Consensus 107 ~~~~vi~tTN-~~~~lD 122 (170)
...++|+||| .++.+.
T Consensus 114 g~~~iiits~~~p~~l~ 130 (149)
T 2kjq_A 114 GKGFLLLGSEYTPQQLV 130 (149)
T ss_dssp TCCEEEEEESSCTTTSS
T ss_pred CCcEEEEECCCCHHHcc
Confidence 2233555666 555443
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.26 E-value=8.1e-07 Score=73.70 Aligned_cols=15 Identities=60% Similarity=0.713 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||||||++|+++|
T Consensus 158 ~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMA 173 (308)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 79 9999999999999
No 93
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.14 E-value=1.1e-06 Score=69.99 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=49.1
Q ss_pred cc-CCCcHHHHHHHHH-c-----ccccccc------c-cCceeEeeechhhhccCCccchHHH-HHHHHHhhchh----c
Q 036857 43 WG-PYTGKSSLIAAMA-D-----LDLKEFQ------S-NSRSILVIEDAVTSFESNAYNSVAL-SALLKFVDGLW----S 103 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~-----~~l~~v~------~-~~p~il~iDEiD~~~~~~~~~~~~~-~~ll~~lDg~~----~ 103 (170)
|| ||||||++|.++| . +.+..-. . ....|+++||+|.- ..+.+ ..+-+.+||.. .
T Consensus 64 ~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~------~~~~~d~~lrn~ldG~~~~iD~ 137 (212)
T 1tue_A 64 CGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTT------CWTYFDTYMRNALDGNPISIDR 137 (212)
T ss_dssp ESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHH------HHHHHHHHCHHHHHTCCEEEC-
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCch------hHHHHHHHHHHHhCCCcccHHH
Confidence 89 9999999999999 1 1111000 0 12569999999842 12222 23456677741 1
Q ss_pred cCCC-----CeEEEEeCCCCCCCCCCCCC-CCccceEEEcCCCC
Q 036857 104 SSGD-----GRILVMTTDYKDHIDPVPLR-PSCMDMHFHLSSHT 141 (170)
Q Consensus 104 ~~~~-----~~~vi~tTN~~~~lD~AllR-pgR~d~~i~~~~p~ 141 (170)
.+.. ..-+|+|||..=.-+....+ -.|+- .+.|+.|-
T Consensus 138 Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~~ 180 (212)
T 1tue_A 138 KHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNAF 180 (212)
T ss_dssp ---CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSCC
T ss_pred hhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCCC
Confidence 1111 34688999953333443310 02443 55555443
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.11 E-value=1.2e-06 Score=77.44 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred ccCChhhHHHhhcCc---------------cc-CCCcHHHHHHHH-Hcc---------------cccc-cc---------
Q 036857 28 IATDFDMNKALVDDY---------------WG-PYTGKSSLIAAM-ADL---------------DLKE-FQ--------- 65 (170)
Q Consensus 28 v~~~~~~k~~l~~~~---------------~G-PGtGKT~la~ai-A~~---------------~l~~-v~--------- 65 (170)
+.+++.+|..+.-.+ .| ||| ||++|+++ +.+ ++.. +.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~ 293 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA 293 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC
Confidence 667777776654221 49 999 99999999 610 0100 11
Q ss_pred ----ccCceeEeeechhhhccCCccchHHHHHHHHHhh-------chhccCCCCeEEEEeCCCCC-----------CCCC
Q 036857 66 ----SNSRSILVIEDAVTSFESNAYNSVALSALLKFVD-------GLWSSSGDGRILVMTTDYKD-----------HIDP 123 (170)
Q Consensus 66 ----~~~p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-------g~~~~~~~~~~vi~tTN~~~-----------~lD~ 123 (170)
.....++|+|||+.+ .....+.|++.|. |. ..+..+.||+|+|..+ .|++
T Consensus 294 G~l~LAdgGvl~lDEIn~~------~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 294 GAAVLADGGILAVDHLEGA------PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp CHHHHTTTSEEEEECCTTC------CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CeeEEcCCCeeehHhhhhC------CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 011689999999875 3456677777765 33 2256789999999876 7888
Q ss_pred CCCCCCccceE-EEcCCCCc
Q 036857 124 VPLRPSCMDMH-FHLSSHTF 142 (170)
Q Consensus 124 AllRpgR~d~~-i~~~~p~~ 142 (170)
+++ .|||+. +.+++|+.
T Consensus 366 alL--DRFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 366 DFL--SHFDLIAFLGVDPRP 383 (506)
T ss_dssp HHH--TTCSEEEETTC----
T ss_pred HHh--hheeeEEEecCCCCh
Confidence 999 599875 45677876
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.98 E-value=7.7e-06 Score=84.24 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=60.0
Q ss_pred cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHHhh--
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKFVD-- 99 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-- 99 (170)
.| ||||||++++++| +..+..+.... .+.+++||++.+-. .+++.+-.+++
T Consensus 651 ~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------evLs~l~~~l~~i 724 (2695)
T 4akg_A 651 FGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------KVLSAVSANIQQI 724 (2695)
T ss_dssp ECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH------HHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh------HHHHHHHHHHHHH
Confidence 59 9999999999999 33333332221 88999999987633 33333322222
Q ss_pred --chh------------ccCCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 100 --GLW------------SSSGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 100 --g~~------------~~~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+. -....+..+++|.| ....|++++.+ || +.+.+.+||.
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 111 11123456888999 55689999986 55 6899999998
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=4.5e-05 Score=79.52 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=45.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhh--chhccC------CCCeEEEEeCCCC-----CCCCCCCCCCCccceEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVD--GLWSSS------GDGRILVMTTDYK-----DHIDPVPLRPSCMDMHF 135 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD--g~~~~~------~~~~~vi~tTN~~-----~~lD~AllRpgR~d~~i 135 (170)
..|+|+||++.-..+.-..+....-|...|| |..... -.++.+|+|+|++ ..|+++++| ||-. +
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i 1451 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-L 1451 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-E
T ss_pred eEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-E
Confidence 4699999998533322222333333334444 222110 1356789999987 479999998 7766 8
Q ss_pred EcCCCCc
Q 036857 136 HLSSHTF 142 (170)
Q Consensus 136 ~~~~p~~ 142 (170)
.+++|+.
T Consensus 1452 ~i~~ps~ 1458 (3245)
T 3vkg_A 1452 LVDFPST 1458 (3245)
T ss_dssp ECCCCCH
T ss_pred EeCCCCH
Confidence 9999998
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.77 E-value=2.1e-05 Score=79.20 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=33.6
Q ss_pred ceeEeeechhhhccCC---------cc--chHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RSILVIEDAVTSFESN---------AY--NSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~il~iDEiD~~~~~~---------~~--~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
|++|+|||++.+.+.. .. ..+.++++|..|++... ..+ +++++||..
T Consensus 1506 ~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~--~~~-v~VI~tNq~ 1563 (2050)
T 3cmu_A 1506 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSN-TLLIFINQI 1563 (2050)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--TTT-CEEEEEECE
T ss_pred CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH--hCC-cEEEEEccc
Confidence 9999999999888721 11 35678999999999876 344 455556643
No 98
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.67 E-value=7.6e-05 Score=63.53 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=27.2
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchh-------ccCCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLW-------SSSGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~-------~~~~~~~~vi~tTN~ 117 (170)
..+||+|||+.+- ......|+..|+.-. .....++-+|+|||.
T Consensus 232 ~gtlfldei~~l~------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 232 GGTLFLDEIGELS------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp TSEEEEESGGGCC------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CcEEEEcChhhCC------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 5699999999873 344555666665311 001236679999985
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.38 E-value=0.00018 Score=59.03 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=14.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||||||++|+|+|
T Consensus 110 ~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 110 FGPATTGKTNIAEAIA 125 (267)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 79 9999999999999
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.31 E-value=0.0035 Score=50.69 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=22.8
Q ss_pred cccccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 25 SNTIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
-+.+++-+...+.+.. + +| +|+|||++++.++
T Consensus 12 ~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 3445555555555543 3 79 9999999999998
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.18 E-value=0.00061 Score=71.30 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=59.1
Q ss_pred cc-CCCcHHHHHHHHH---ccccccccccC-----------------ceeEeeechhhhccCCccchHHHHHHHHHhh--
Q 036857 43 WG-PYTGKSSLIAAMA---DLDLKEFQSNS-----------------RSILVIEDAVTSFESNAYNSVALSALLKFVD-- 99 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA---~~~l~~v~~~~-----------------p~il~iDEiD~~~~~~~~~~~~~~~ll~~lD-- 99 (170)
+| +|||||.+++.+| +..+..+.... .+-.+||||+.+- ..+++.+.+++.
T Consensus 610 ~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~------~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 610 FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE------ERILSAVSQQIQTI 683 (3245)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC------HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC------HHHHHHHHHHHHHH
Confidence 59 9999999999999 22222221111 7788999998762 234444433332
Q ss_pred ---------------chhccCCCCeEEEEeCC----CCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 100 ---------------GLWSSSGDGRILVMTTD----YKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 100 ---------------g~~~~~~~~~~vi~tTN----~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
|-.-....+.-+++|.| ....|+.++.. || +.|.+..||.
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 21111133567899999 45689999985 44 5699999998
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.15 E-value=0.00072 Score=57.18 Aligned_cols=15 Identities=27% Similarity=0.249 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +||||+.+|+++.
T Consensus 158 ~GesGtGKe~lAr~ih 173 (368)
T 3dzd_A 158 TGESGTGKEIVARLIH 173 (368)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCchHHHHHHHHH
Confidence 69 9999999999998
No 103
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.92 E-value=0.00065 Score=57.24 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 67 ~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 67 YGPESSGKTTVALHAV 82 (349)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 79 9999999999998
No 104
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.88 E-value=0.0021 Score=54.57 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=30.0
Q ss_pred ceeEeeechhhhcc----C---Cc----cchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RSILVIEDAVTSFE----S---NA----YNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~il~iDEiD~~~~----~---~~----~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
+.++++|.+-.+.+ . .+ ...+.+++++..|..+.. ..++.||+ +|+.
T Consensus 140 ~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak--~~~~tVI~-inqv 197 (356)
T 3hr8_A 140 VDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN--KSKAVVIF-TNQI 197 (356)
T ss_dssp CSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHH--TSSCEEEE-EEES
T ss_pred CCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHH--hcCCEEEE-Eeee
Confidence 78999999988775 1 01 224667777777777765 24555544 3544
No 105
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.77 E-value=0.002 Score=56.32 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=50.1
Q ss_pred ceeEeeechhhhccCCc----cch--HHHHHHHHHhhchhcc------CCCCeEEEEeC-----CCCCCCCCCCCCCCcc
Q 036857 69 RSILVIEDAVTSFESNA----YNS--VALSALLKFVDGLWSS------SGDGRILVMTT-----DYKDHIDPVPLRPSCM 131 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~----~~~--~~~~~ll~~lDg~~~~------~~~~~~vi~tT-----N~~~~lD~AllRpgR~ 131 (170)
..|+++||+|.+....+ .-+ -+...||..||+.... ...++++|+|. |..+ +-|.|+ |||
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~--~R~ 327 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQ--GRL 327 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHH--TTC
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHh--ccc
Confidence 56999999999986321 111 1446899999984211 13578888886 5444 446777 799
Q ss_pred ceEEEcCCCCc
Q 036857 132 DMHFHLSSHTF 142 (170)
Q Consensus 132 d~~i~~~~p~~ 142 (170)
..+|+|+..+.
T Consensus 328 ~i~i~l~~lt~ 338 (444)
T 1g41_A 328 PIRVELTALSA 338 (444)
T ss_dssp CEEEECCCCCH
T ss_pred ceeeeCCCCCH
Confidence 99999998888
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.76 E-value=0.0034 Score=48.55 Aligned_cols=63 Identities=16% Similarity=-0.016 Sum_probs=33.0
Q ss_pred ceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC-----CCCCCCCcc-ceEEEcCC
Q 036857 69 RSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID-----PVPLRPSCM-DMHFHLSS 139 (170)
Q Consensus 69 p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD-----~AllRpgR~-d~~i~~~~ 139 (170)
|.++++||.-...... ......+..++..+ .. .+..+|++|...+... +.+.+ -+ |..+.+..
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l---~~---~g~tii~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTIL---LE---MGVTTILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHH---HH---HCCEEEEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHH---HH---CCCeEEEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 8999999998776411 12222244444443 32 3667777777655552 22221 35 77777653
No 107
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.75 E-value=0.0029 Score=53.77 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=28.2
Q ss_pred ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+.+|+||.+..+..... ...+.+++++..|.++.. ..++.||++
T Consensus 153 ~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~--~~~~~VI~~ 207 (366)
T 1xp8_A 153 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS--KTGTAAIFI 207 (366)
T ss_dssp CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred CCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence 78999999998874111 122456777777776654 345655554
No 108
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.63 E-value=0.00061 Score=51.09 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=27.3
Q ss_pred ceeEeeechhhhccCCccc-----------hHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYN-----------SVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~-----------~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
|.++++||=-+-+..+... ......+.+.+..+.. ++.-+|++|...+.
T Consensus 102 p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 102 PVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEE 161 (171)
T ss_dssp EEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHH
T ss_pred EEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHH
Confidence 9999999975544311110 1134556666666654 25556666665443
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.58 E-value=0.0045 Score=62.72 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCcccCCCCCCCCcccc-cCChhhHHHhh-cCc--------cc-CCCcHHHHHHHHH
Q 036857 11 PSYWNSNKFEHPATSNTI-ATDFDMNKALV-DDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 11 ~~~w~~~~~~~p~~~~~v-~~~~~~k~~l~-~~~--------~G-PGtGKT~la~aiA 57 (170)
.++|.+++..+....+.+ -+.+.+...+. .-+ +| ||||||++|.+++
T Consensus 1045 ~~~~~~l~~~~~~~~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1045 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp TTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cceeeecCCccccccccccCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 467877766655544444 33444444331 233 69 9999999999998
No 110
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.50 E-value=0.0021 Score=54.31 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=26.6
Q ss_pred ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+.+|+||.+..+..... ...+.+++++..|.++.. ..++.||++
T Consensus 142 ~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~--~~~~~VI~~ 196 (356)
T 1u94_A 142 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLIFI 196 (356)
T ss_dssp CSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHH--HHTCEEEEE
T ss_pred CCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 78999999998874111 112345666666665544 235556654
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.43 E-value=0.0048 Score=49.47 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=28.8
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
|.+|+|||+-.+..........+..++..|..+.. ..++.+|+++.
T Consensus 134 ~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~--~~g~tvi~i~H 179 (279)
T 1nlf_A 134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA--DTGCSIVFLHH 179 (279)
T ss_dssp CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH--HHCCEEEEEEE
T ss_pred CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH--HcCCEEEEEec
Confidence 88999999988665333334455666666666643 13555666554
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.24 E-value=0.0016 Score=48.14 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++|
T Consensus 9 ~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.19 E-value=0.022 Score=53.40 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
|......++-+...++|...+ +| +|+|||+||+.++
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~ 168 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAV 168 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHh
Confidence 344455666666665554433 79 9999999999988
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0018 Score=47.65 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| ||+|||++|+.++.
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49 99999999999984
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.002 Score=47.06 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.+|
T Consensus 7 ~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLS 22 (173)
T ss_dssp ECSSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 116
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.013 Score=45.08 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|..+|
T Consensus 36 ~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999998876
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.09 E-value=0.0026 Score=54.95 Aligned_cols=40 Identities=15% Similarity=-0.054 Sum_probs=25.6
Q ss_pred cCCCCCCCCcccccCChhhHHHhhcC---------c---cc-CCCcHHHHHHHHH
Q 036857 16 SNKFEHPATSNTIATDFDMNKALVDD---------Y---WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 16 ~~~~~~p~~~~~v~~~~~~k~~l~~~---------~---~G-PGtGKT~la~aiA 57 (170)
+++...|.+|+. +.+++++.+... . .| ||||||+++++++
T Consensus 14 ~~~~~~p~~~~~--Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 14 LVPRGSHMTFDD--LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp -------CCSSC--CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred CccccCCCcccc--CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHH
Confidence 455777888886 477777766522 2 59 9999999999988
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.09 E-value=0.021 Score=48.21 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=26.9
Q ss_pred CCCCcccccCChhhHHHhhcCc-----cc-CCCcHHHHHHHHH
Q 036857 21 HPATSNTIATDFDMNKALVDDY-----WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~~-----~G-PGtGKT~la~aiA 57 (170)
.+.+++++.+++..+.-....= -| .|+||||+.++++
T Consensus 102 ~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 102 KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4557888888776655332111 49 9999999999998
No 119
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.02 E-value=0.01 Score=50.81 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 35 lGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIA 50 (381)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCchHHHHHHHHH
Confidence 49 9999999999999
No 120
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.02 E-value=0.0025 Score=46.91 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 10 ~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLA 25 (173)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 121
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.95 E-value=0.0045 Score=55.78 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=24.2
Q ss_pred CcccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 24 TSNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 24 ~~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
.|-+-.+++.|++.+...+ +| ||||||+++-.+.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHH
Confidence 3434468899988876533 79 9999998655554
No 122
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.91 E-value=0.0029 Score=46.94 Aligned_cols=15 Identities=47% Similarity=0.525 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++|
T Consensus 10 ~G~~GsGKsTla~~La 25 (175)
T 1via_A 10 IGFMGSGKSTLARALA 25 (175)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.87 E-value=0.0031 Score=46.95 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 11 ~G~~GsGKst~a~~La 26 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLA 26 (185)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.86 E-value=0.0029 Score=46.92 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 7 ~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.83 E-value=0.003 Score=47.17 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=14.7
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| ||+||||+++.+|+
T Consensus 15 ~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EECTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 49 99999999999994
No 126
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.81 E-value=0.0034 Score=46.57 Aligned_cols=15 Identities=20% Similarity=0.218 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 9 ~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAM 24 (192)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.80 E-value=0.0034 Score=47.78 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++|
T Consensus 31 ~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFA 46 (199)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.79 E-value=0.0032 Score=46.92 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 11 ~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 11 TGHPATGKTTLSQALA 26 (193)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 129
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.79 E-value=0.0071 Score=48.37 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++-.+|
T Consensus 12 ~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 12 GAAPGVGKTYAMLQAA 27 (228)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 47 9999999998888
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.72 E-value=0.0037 Score=45.24 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.9
Q ss_pred cc-CCCcHHHHHHHHHccc
Q 036857 43 WG-PYTGKSSLIAAMADLD 60 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~ 60 (170)
.| ||+|||++|+.+...+
T Consensus 7 ~G~~GsGKsT~a~~L~~~g 25 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLLKERG 25 (179)
T ss_dssp ECCTTSCHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHCC
Confidence 49 9999999999996333
No 131
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.72 E-value=0.019 Score=47.13 Aligned_cols=87 Identities=13% Similarity=0.021 Sum_probs=54.0
Q ss_pred cc-CCCcHHHHHHHHH----ccc-----cccccccC-----------------ceeEeeechhh-hccCCccchHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA----DLD-----LKEFQSNS-----------------RSILVIEDAVT-SFESNAYNSVALSAL 94 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA----~~~-----l~~v~~~~-----------------p~il~iDEiD~-~~~~~~~~~~~~~~l 94 (170)
|| +|+||++.+++++ ..+ ...+..+. ..|+++||+|. +. ....+.|
T Consensus 24 ~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~------~~~~~aL 97 (343)
T 1jr3_D 24 LGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN------AAINEQL 97 (343)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC------TTHHHHH
T ss_pred ECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC------hHHHHHH
Confidence 79 9999999999998 111 11111111 67999999987 52 2345667
Q ss_pred HHHhhchhccCCCCeEEEEeCCCCC------CCCCCCCCCCccceEEEcCCCCc
Q 036857 95 LKFVDGLWSSSGDGRILVMTTDYKD------HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 95 l~~lDg~~~~~~~~~~vi~tTN~~~------~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
+..+... +.++++|++|+.++ .+-+++...| ..++|..++.
T Consensus 98 l~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~ 144 (343)
T 1jr3_D 98 LTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQ 144 (343)
T ss_dssp HHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCT
T ss_pred HHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCH
Confidence 7777654 34666666555433 4556666533 4678877765
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.71 E-value=0.0039 Score=46.44 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 8 ~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLA 23 (184)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.71 E-value=0.004 Score=45.79 Aligned_cols=19 Identities=42% Similarity=0.503 Sum_probs=15.8
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
-| ||+|||++++.+| .+++
T Consensus 13 ~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp ESCTTSSHHHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHHHhCC
Confidence 39 9999999999999 3444
No 134
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.70 E-value=0.004 Score=46.23 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 9 ~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 9 LGGPGAGKGTQCARIV 24 (196)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 135
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.66 E-value=0.0043 Score=46.15 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 10 ~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLA 25 (186)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 136
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.63 E-value=0.0044 Score=46.44 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+||||+++.+|
T Consensus 6 ~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 6 FGTVGAGKSTISAEIS 21 (205)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHH
Confidence 39 9999999999999
No 137
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.62 E-value=0.024 Score=48.10 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 36 lGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLA 51 (359)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHh
Confidence 39 9999999999999
No 138
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.61 E-value=0.0045 Score=46.69 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 10 ~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 10 EGIDGSGKSSQATLLK 25 (213)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 139
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.59 E-value=0.0046 Score=45.95 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++|
T Consensus 17 ~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 17 TGTPGVGKTTLGKELA 32 (180)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 140
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.58 E-value=0.0048 Score=45.23 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 8 ~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 8 VGARGCGMTTVGRELA 23 (173)
T ss_dssp ESCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.57 E-value=0.0048 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.2
Q ss_pred cc-CCCcHHHHHHHHHcc--ccccc
Q 036857 43 WG-PYTGKSSLIAAMADL--DLKEF 64 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~--~l~~v 64 (170)
.| ||+|||++++.+|+. ++..+
T Consensus 16 ~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 49 999999999999933 54433
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0049 Score=46.76 Aligned_cols=15 Identities=47% Similarity=0.496 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.++
T Consensus 24 ~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIA 39 (202)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.54 E-value=0.011 Score=50.74 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=26.6
Q ss_pred ceeEeeechhhhccCCc-------cchHHHHHHHHHhhchhccCCCCeEEEEeCC
Q 036857 69 RSILVIEDAVTSFESNA-------YNSVALSALLKFVDGLWSSSGDGRILVMTTD 116 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~-------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN 116 (170)
|.+|++|++-.++...- ..++.+..++..|..+.. ..++.||+++.
T Consensus 274 ~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lak--e~gitVIlv~H 326 (400)
T 3lda_A 274 FSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLAD--QFGVAVVVTNQ 326 (400)
T ss_dssp EEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEEE
T ss_pred CceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHH--HcCCEEEEEEe
Confidence 88999999987765211 112334666666666653 23555555544
No 144
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.49 E-value=0.023 Score=48.33 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=25.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD 119 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~ 119 (170)
|.||++||-=+-+. ......+++.+..+.. ..+.-+|+.|...+
T Consensus 182 P~lLLlDEPTs~LD-----~~~~~~i~~lL~~l~~--~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 182 PKVLLCDQATSALD-----PATTRSILELLKDINR--RLGLTILLITHEMD 225 (366)
T ss_dssp CSEEEEESTTTTSC-----HHHHHHHHHHHHHHHH--HSCCEEEEEESCHH
T ss_pred CCEEEEECCCccCC-----HHHHHHHHHHHHHHHH--hCCCEEEEEecCHH
Confidence 99999999843322 2334445555555543 13556667776554
No 145
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.46 E-value=0.0051 Score=45.93 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 15 ~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIV 30 (196)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 146
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.45 E-value=0.021 Score=46.43 Aligned_cols=46 Identities=13% Similarity=0.368 Sum_probs=26.5
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.+|++||-=+-+. ......+++.+..+.. ..+..||++|...+.+
T Consensus 162 P~lLlLDEPts~LD-----~~~~~~i~~~l~~l~~--~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 162 PKVLILDEPTAGLD-----PMGVSEIMKLLVEMQK--ELGITIIIATHDIDIV 207 (275)
T ss_dssp CSEEEEECTTTTCC-----HHHHHHHHHHHHHHHH--HHCCEEEEEESCCSSG
T ss_pred CCEEEEECccccCC-----HHHHHHHHHHHHHHHh--hCCCEEEEEecCHHHH
Confidence 99999999743322 2333445555555531 1255677777766654
No 147
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.44 E-value=0.0057 Score=44.67 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLS 21 (168)
T ss_dssp ESCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.44 E-value=0.0052 Score=45.98 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 18 ~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLV 33 (199)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 149
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.44 E-value=0.0056 Score=46.58 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++|
T Consensus 31 ~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 31 TGLSGSGKSTLACALN 46 (200)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.43 E-value=0.0056 Score=46.37 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 26 ~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLA 41 (201)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 151
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.42 E-value=0.0035 Score=46.40 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=11.9
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++|+.+| .++.
T Consensus 11 ~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp ECCC----CHHHHHHHHHSTT
T ss_pred ECCCCCCHHHHHHHHHHhcCC
Confidence 49 9999999999999 4443
No 152
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.42 E-value=0.024 Score=44.21 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=26.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
..+|++||+-....- .-.....+++.+..- +...-||+|+|.+
T Consensus 121 yDlvILDEi~~al~~---g~l~~~ev~~~l~~R----p~~~~vIlTGr~a 163 (196)
T 1g5t_A 121 LDMVVLDELTYMVAY---DYLPLEEVISALNAR----PGHQTVIITGRGC 163 (196)
T ss_dssp CSEEEEETHHHHHHT---TSSCHHHHHHHHHTS----CTTCEEEEECSSC
T ss_pred CCEEEEeCCCccccC---CCCCHHHHHHHHHhC----cCCCEEEEECCCC
Confidence 789999999543221 112234455555433 5678899999865
No 153
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.40 E-value=0.0059 Score=45.34 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.++
T Consensus 6 ~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLY 21 (195)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.40 E-value=0.006 Score=45.04 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 14 ~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 14 MGVSGSGKSAVASEVA 29 (175)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.40 E-value=0.0055 Score=45.38 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 12 ~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIV 27 (194)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.38 E-value=0.025 Score=47.58 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=29.6
Q ss_pred CceeEeeechhhhccCC----c---------cchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCC
Q 036857 68 SRSILVIEDAVTSFESN----A---------YNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDH 120 (170)
Q Consensus 68 ~p~il~iDEiD~~~~~~----~---------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~ 120 (170)
.|.+|++|=+-.+.... . .+.+.+++.|..|-++.. ..++.+|+ ||+...
T Consensus 111 ~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak--~~~i~vi~-tNQV~k 173 (333)
T 3io5_A 111 EKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFS--TKNIPCIA-INHTYE 173 (333)
T ss_dssp CCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHH--HTTCEEEE-EEEC--
T ss_pred CceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHH--HhCCEEEE-ECCeee
Confidence 38999999998887410 0 234566777766666654 24555554 455544
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.38 E-value=0.006 Score=46.39 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.++
T Consensus 35 ~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVA 50 (200)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 158
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.35 E-value=0.025 Score=47.80 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 47 lGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 47 LGPSGSGKTTILRLIA 62 (355)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 49 9999999999999
No 159
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.34 E-value=0.044 Score=47.20 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=43.7
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEe---------CC---CCCCCCCCCCCCCccceEEE
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMT---------TD---YKDHIDPVPLRPSCMDMHFH 136 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t---------TN---~~~~lD~AllRpgR~d~~i~ 136 (170)
|.|+||||+|.+ .....+.|+..|+.- +.++++++| || .++.++|.++. ||.. +.
T Consensus 296 ~~VliIDEa~~l------~~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~ 362 (456)
T 2c9o_A 296 PGVLFVDEVHML------DIECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IR 362 (456)
T ss_dssp ECEEEEESGGGC------BHHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred ceEEEEechhhc------CHHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHh--hcce-ee
Confidence 679999999987 345678888877654 234444444 32 27789998985 8877 58
Q ss_pred cCCCCc
Q 036857 137 LSSHTF 142 (170)
Q Consensus 137 ~~~p~~ 142 (170)
|+.++.
T Consensus 363 ~~~~~~ 368 (456)
T 2c9o_A 363 TMLYTP 368 (456)
T ss_dssp CCCCCH
T ss_pred CCCCCH
Confidence 888887
No 160
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.34 E-value=0.0058 Score=46.26 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.++
T Consensus 16 ~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLV 31 (212)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 161
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.25 E-value=0.007 Score=45.25 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 19 ~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLA 34 (186)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 162
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.25 E-value=0.026 Score=47.76 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 35 lGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLA 50 (359)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EcCCCchHHHHHHHHH
Confidence 49 9999999999999
No 163
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.23 E-value=0.0071 Score=46.54 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 10 ~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 164
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.0073 Score=46.19 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIV 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.20 E-value=0.0073 Score=46.08 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQII 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.20 E-value=0.0072 Score=48.19 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 10 ~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLA 25 (260)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.19 E-value=0.035 Score=47.83 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=26.4
Q ss_pred ceeEeeechhhhccCC---ccchHHHHHHHHHhhchhccCCCCeEEEEeC
Q 036857 69 RSILVIEDAVTSFESN---AYNSVALSALLKFVDGLWSSSGDGRILVMTT 115 (170)
Q Consensus 69 p~il~iDEiD~~~~~~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tT 115 (170)
+.+|++|++..+.... ......+..++..|-.+... .++.||+++
T Consensus 314 ~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~s 361 (454)
T 2r6a_A 314 LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE--LEVPVIALS 361 (454)
T ss_dssp CCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH--HTCCEEEEE
T ss_pred CCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEe
Confidence 8899999999887532 12334556666666665432 244444443
No 168
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.13 E-value=0.0081 Score=44.96 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 8 ~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLA 23 (189)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999998
No 169
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.11 E-value=0.0082 Score=44.80 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+||||+++.++
T Consensus 7 G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 7 GIDGSGKSTQIQLLA 21 (197)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.10 E-value=0.008 Score=47.91 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+++|
T Consensus 7 ~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIA 22 (253)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHH
Confidence 59 9999999999999
No 171
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.10 E-value=0.0076 Score=46.66 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 13 ~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.08 E-value=0.0084 Score=45.48 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred cc-CCCcHHHHHHHHHccc
Q 036857 43 WG-PYTGKSSLIAAMADLD 60 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~ 60 (170)
-| ||+|||++++.+|+++
T Consensus 8 ~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp ECSTTSCHHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHCC
Confidence 39 9999999999999543
No 173
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.08 E-value=0.0078 Score=45.55 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.++
T Consensus 15 ~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLV 30 (215)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.08 E-value=0.0078 Score=45.50 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=15.1
Q ss_pred cc-CCCcHHHHHHHHHcc
Q 036857 43 WG-PYTGKSSLIAAMADL 59 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~ 59 (170)
.| ||+|||++++.+|++
T Consensus 7 ~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EECTTSSHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHC
Confidence 49 999999999999953
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.08 E-value=0.0084 Score=45.95 Aligned_cols=15 Identities=47% Similarity=0.483 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+||||+++.++
T Consensus 11 ~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMA 26 (227)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 176
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.05 E-value=0.035 Score=47.03 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 35 lGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIA 50 (362)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHh
Confidence 49 9999999999999
No 177
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.05 E-value=0.0086 Score=46.69 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 22 ~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLA 37 (233)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 178
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.009 Score=45.12 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.8
Q ss_pred cc-CCCcHHHHHHHHH-cccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDL 61 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l 61 (170)
.| ||+|||++++.+| .+++
T Consensus 21 ~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp ECSTTSSHHHHHHHHHHHSSC
T ss_pred ECCCCCCHHHHHHHHHHHcCc
Confidence 49 9999999999999 4443
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.00 E-value=0.0091 Score=44.88 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.+|
T Consensus 10 ~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIM 25 (204)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.94 E-value=0.0089 Score=46.07 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 11 ~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIK 26 (217)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 181
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.93 E-value=0.042 Score=45.39 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.|+
T Consensus 86 vG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLF 101 (306)
T ss_dssp ESSSCHHHHHHHHHHT
T ss_pred ECCCCchHHHHHHHHH
Confidence 39 9999999999999
No 182
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.92 E-value=0.0091 Score=45.97 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 11 ~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 11 SGAPASGKGTQCELIK 26 (222)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 183
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.91 E-value=0.027 Score=47.10 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.+|
T Consensus 11 ~GptGsGKTtla~~La 26 (323)
T 3crm_A 11 MGPTAAGKTDLAMALA 26 (323)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.90 E-value=0.0098 Score=46.65 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+||||+++.||
T Consensus 33 ~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 185
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.83 E-value=0.0099 Score=45.57 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 186
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.83 E-value=0.028 Score=54.81 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=28.1
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
|.|+++||.=+-+... . -..+.+.++++. .+..+|+.|++...+.
T Consensus 573 ~~IliLDE~tSaLD~~--t---e~~i~~~l~~~~----~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 573 PKILLLDEATSALDAE--S---EGIVQQALDKAA----KGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp CSEEEEESTTTTSCTT--T---HHHHHHHHHHHH----TTSEEEEECSCTTTTT
T ss_pred CCEEEEecccccCCHH--H---HHHHHHHHHHHh----CCCEEEEEcccHHHHH
Confidence 9999999985554422 1 234445566654 3566677778776553
No 187
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.80 E-value=0.011 Score=44.41 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 12 ~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIF 27 (207)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 188
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.75 E-value=0.0079 Score=47.68 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 38 ~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp ESCGGGTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.73 E-value=0.012 Score=43.67 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 11 ~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 11 TGLSGAGKTTVSMALE 26 (179)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 190
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.72 E-value=0.024 Score=45.66 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=22.8
Q ss_pred cccccCChhhHHHhhcCc--------cc-CCCcHHHHHHHHH
Q 036857 25 SNTIATDFDMNKALVDDY--------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 25 ~~~v~~~~~~k~~l~~~~--------~G-PGtGKT~la~aiA 57 (170)
-+.+++-+...+++...+ +| +|+|||++++.++
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 344556555555443322 79 9999999999987
No 191
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.67 E-value=0.014 Score=52.15 Aligned_cols=31 Identities=29% Similarity=0.192 Sum_probs=24.3
Q ss_pred cccCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 27 TIATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 27 ~v~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
...+.+++++.+...+ .| ||||||+++++++
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~ 225 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA 225 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH
Confidence 3456788887775543 59 9999999999998
No 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.65 E-value=0.011 Score=48.15 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 39 ~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIF 54 (287)
T ss_dssp ECCTTSCTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 193
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.64 E-value=0.013 Score=45.53 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 6 ~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVK 21 (223)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 194
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.64 E-value=0.013 Score=44.43 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 6 ~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIV 21 (178)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 195
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.64 E-value=0.098 Score=45.83 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=29.6
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHID 122 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~lD 122 (170)
|.+|++||.-......+........+.+.+..+.. .++.+|++|...+.++
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~ 189 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYG 189 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSS
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCcc
Confidence 78888888866544211122333445555555543 3667788887777653
No 196
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.62 E-value=0.013 Score=47.12 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| ||+|||++|+.+++
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49 99999999999993
No 197
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.55 E-value=0.014 Score=43.86 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+++.++
T Consensus 13 ~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALV 28 (205)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 39 9999999999999
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.53 E-value=0.013 Score=43.84 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
-| ||+|||++++.+|+
T Consensus 14 ~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49 99999999999993
No 199
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.50 E-value=0.015 Score=44.35 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 18 ~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVL 33 (204)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 200
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.48 E-value=0.013 Score=44.86 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+||||+++.|+
T Consensus 28 ~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLA 43 (208)
T ss_dssp ECCTTSCTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.47 E-value=0.014 Score=44.36 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| ||+|||++++.+++
T Consensus 27 ~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EESTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49 99999999999993
No 202
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.46 E-value=0.038 Score=55.36 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=33.8
Q ss_pred ceeEeeechhhhccCCc-----------cchHHHHHHHHHhhchhccCCCCeEEEEeCCC
Q 036857 69 RSILVIEDAVTSFESNA-----------YNSVALSALLKFVDGLWSSSGDGRILVMTTDY 117 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~-----------~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~ 117 (170)
+++|++|-+..+.+..+ -+.+.+++.|..|.+.... .++.+|++.--
T Consensus 1510 ~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~--~~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1510 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFINQI 1567 (1706)
T ss_dssp CSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH--HTCEEEEEECB
T ss_pred CCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh--CCcEEEEeecc
Confidence 99999999999987322 2456778878888777663 57777776443
No 203
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.43 E-value=0.015 Score=44.48 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 31 ~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 31 TGLSASGKSTLAVELE 46 (211)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 204
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.42 E-value=0.016 Score=43.63 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++++.+|
T Consensus 8 ~G~~GsGKst~~~~la 23 (208)
T 3ake_A 8 DGPSASGKSSVARRVA 23 (208)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.39 E-value=0.073 Score=45.66 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=25.1
Q ss_pred ceeEeeechhhhccC--C---ccchHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 69 RSILVIEDAVTSFES--N---AYNSVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 69 p~il~iDEiD~~~~~--~---~~~~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+.+|+||.+..+... . ......++.+...|-.+... .++.||++
T Consensus 311 ~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~l 359 (444)
T 2q6t_A 311 VGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARE--LGIPIIAL 359 (444)
T ss_dssp CCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHH--HTSCEEEE
T ss_pred CCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEE
Confidence 789999999887653 1 12233456666666655442 24444443
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.38 E-value=0.016 Score=43.97 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred ce--eEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCC
Q 036857 69 RS--ILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYK 118 (170)
Q Consensus 69 p~--il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~ 118 (170)
|. +|++||...+....... ...+++.+..+.. ..++.++++|...
T Consensus 122 ~~~~llilDe~~~~~~~d~~~---~~~~~~~l~~~~~--~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 122 YGKARLVIDSVSALFLDKPAM---ARKISYYLKRVLN--KWNFTIYATSQYA 168 (235)
T ss_dssp SSCEEEEEETGGGGSSSCGGG---HHHHHHHHHHHHH--HTTEEEEEEEC--
T ss_pred CCceEEEEECchHhhcCCHHH---HHHHHHHHHHHHH--hCCCeEEEEeccC
Confidence 77 99999998876432222 3344444444432 2356667666544
No 207
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.38 E-value=0.033 Score=49.59 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.++
T Consensus 373 vG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 373 VGMSGGGKSTLINLIP 388 (578)
T ss_dssp ECSTTSSHHHHHTTTT
T ss_pred ECCCCChHHHHHHHHh
Confidence 39 9999999999999
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.35 E-value=0.016 Score=43.81 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 26 ~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 26 YGPYASGKTTLALQTG 41 (220)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999997
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.26 E-value=0.016 Score=44.07 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 31 ~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 210
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.16 E-value=0.018 Score=45.36 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 35 ~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLK 50 (243)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 211
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.16 E-value=0.018 Score=45.35 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.5
Q ss_pred cc-CCCcHHHHHHHHHc-cccc
Q 036857 43 WG-PYTGKSSLIAAMAD-LDLK 62 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~-~~l~ 62 (170)
-| ||+|||++|+.++. ++..
T Consensus 28 ~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp ECSTTSSHHHHHHHHHHHTTGG
T ss_pred ECCCCCCHHHHHHHHHHHhhhh
Confidence 49 99999999999993 5543
No 212
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.16 E-value=0.011 Score=44.77 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+||||+++.++
T Consensus 7 G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 7 GVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 213
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.15 E-value=0.13 Score=37.19 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 18 ~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFV 33 (181)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 214
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.11 E-value=0.055 Score=48.34 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++++.++
T Consensus 387 vG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLM 402 (598)
T ss_dssp ECCTTSSTTHHHHHHT
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999999
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.05 E-value=0.02 Score=43.95 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.+|
T Consensus 30 ~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLA 45 (243)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999998
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.02 E-value=0.021 Score=43.70 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=15.6
Q ss_pred cc-CCCcHHHHHHHHHccc
Q 036857 43 WG-PYTGKSSLIAAMADLD 60 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~~ 60 (170)
-| ||+|||++++.+++++
T Consensus 10 ~G~~GSGKST~~~~L~~lg 28 (218)
T 1vht_A 10 TGGIGSGKSTVANAFADLG 28 (218)
T ss_dssp ECCTTSCHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHcC
Confidence 39 9999999999999543
No 217
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.01 E-value=0.021 Score=43.89 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=14.2
Q ss_pred c-CCCcHHHHHHHHHc
Q 036857 44 G-PYTGKSSLIAAMAD 58 (170)
Q Consensus 44 G-PGtGKT~la~aiA~ 58 (170)
| ||+|||++++.+++
T Consensus 19 G~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 19 GKIGTGKSTVCEILKN 34 (192)
T ss_dssp CSTTSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9 99999999999993
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.97 E-value=0.022 Score=42.60 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 11 ~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLI 26 (180)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 219
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.91 E-value=0.021 Score=44.43 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+||+|.|+.||
T Consensus 6 ~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLA 21 (206)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 220
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.89 E-value=0.024 Score=50.89 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=22.1
Q ss_pred cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
.+++.+++.+...+ +| ||||||+++..++
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i 216 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV 216 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH
Confidence 46778887765433 79 9999999887776
No 221
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.82 E-value=0.022 Score=43.14 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
-| +|+||||+++.+++
T Consensus 12 ~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 12 AGGTASGKTTLAQALAR 28 (211)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39 99999999999993
No 222
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.71 E-value=0.034 Score=49.68 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++++.++
T Consensus 375 vG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECSSSSSHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.52 E-value=0.028 Score=45.04 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 54 ~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMA 69 (250)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 224
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.47 E-value=0.029 Score=44.42 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.+|
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.45 E-value=0.028 Score=42.74 Aligned_cols=15 Identities=27% Similarity=0.466 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 28 ~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLS 43 (201)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 226
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.38 E-value=0.029 Score=44.15 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.8
Q ss_pred cc-CCCcHHHHHHHHH-cccccc
Q 036857 43 WG-PYTGKSSLIAAMA-DLDLKE 63 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~~l~~ 63 (170)
.| ||+||+|.|+.|| ..++..
T Consensus 35 lGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCEE
T ss_pred ECCCCCCHHHHHHHHHHHHCCce
Confidence 59 9999999999999 444433
No 227
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.38 E-value=0.072 Score=51.99 Aligned_cols=44 Identities=14% Similarity=0.342 Sum_probs=26.4
Q ss_pred ceeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCCCC
Q 036857 69 RSILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKDHI 121 (170)
Q Consensus 69 p~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~~l 121 (170)
|.||++||.=+-.. ..+-..+.+.++... .+..+|+-|.+.+.+
T Consensus 1236 ~~ILiLDEaTSaLD-----~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1236 PKILLLDEATSALD-----TESEKVVQEALDRAR----EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp CSEEEEESCCCSTT-----SHHHHHHHHHHTTTS----SSSEEEEECSSSSTT
T ss_pred CCEEEEeCccccCC-----HHHHHHHHHHHHHHc----CCCEEEEeccCHHHH
Confidence 89999999844332 122234455566553 356666667776654
No 228
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.35 E-value=0.029 Score=45.33 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.0
Q ss_pred cc-CCCcHHHHHHHHHcc
Q 036857 43 WG-PYTGKSSLIAAMADL 59 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~~ 59 (170)
-| ||+|||++|+.++.+
T Consensus 81 ~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 49 999999999999943
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.33 E-value=0.033 Score=42.67 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 14 ~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 14 SGPSGVGKGTVREAVF 29 (208)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999999
No 230
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.27 E-value=0.046 Score=47.89 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCCcccccCChhhHHHhhcCc------------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY------------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~------------~G-PGtGKT~la~aiA 57 (170)
|......++-+...++|...+ +| +|+|||++|+.++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence 344455666666655554332 79 9999999999886
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.26 E-value=0.031 Score=44.92 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 41 ~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQA 56 (296)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 232
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.24 E-value=0.034 Score=44.32 Aligned_cols=15 Identities=47% Similarity=0.435 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 15 ~G~~GsGKsTla~~la 30 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 233
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.22 E-value=0.29 Score=36.36 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 14 ~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.17 E-value=0.036 Score=42.30 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++++|+
T Consensus 26 ~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 235
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.15 E-value=0.033 Score=42.74 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=13.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 29 ~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999998887
No 236
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.10 E-value=0.11 Score=46.10 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.++
T Consensus 375 vG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 375 VGRSGSGKSTIASLIT 390 (582)
T ss_dssp EECTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 237
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.05 E-value=0.04 Score=51.26 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=22.1
Q ss_pred cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
.+++.+++.+...+ +| ||||||+++..++
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i 392 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV 392 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH
Confidence 46778877665533 69 9999999887776
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.01 E-value=0.04 Score=41.32 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 7 ~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLF 22 (186)
T ss_dssp ESSSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 239
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.93 E-value=0.12 Score=40.18 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+|+..+.
T Consensus 19 vGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFM 34 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCcCHHHHHHHHH
Confidence 49 9999999999998
No 240
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.91 E-value=0.039 Score=46.89 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=14.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++++|
T Consensus 30 ~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 30 VGSPGSGKSTIAEELC 45 (359)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 69 9999999999999
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.85 E-value=0.042 Score=43.11 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++++.++
T Consensus 33 G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 33 GPEGSGKTTVINEVY 47 (229)
T ss_dssp CCTTSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 242
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.76 E-value=0.045 Score=42.60 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 22 ~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIA 37 (236)
T ss_dssp ECSSCSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 243
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.76 E-value=0.038 Score=47.20 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.++
T Consensus 264 ~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHL 279 (416)
T ss_dssp ESCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 244
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.73 E-value=0.24 Score=36.20 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 22 ~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFA 37 (196)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 245
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.56 E-value=0.049 Score=41.46 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 9 ~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 9 DGPAAAGKSTIAKRVA 24 (219)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 246
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.44 E-value=0.051 Score=42.59 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=14.1
Q ss_pred c-CCCcHHHHHHHHHc
Q 036857 44 G-PYTGKSSLIAAMAD 58 (170)
Q Consensus 44 G-PGtGKT~la~aiA~ 58 (170)
| .|+||||+++.+++
T Consensus 32 G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 32 GGTASGKSTVCEKIME 47 (245)
T ss_dssp CSTTSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9 99999999999993
No 247
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.059 Score=50.07 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=22.1
Q ss_pred cCChhhHHHhhcCc-------cc-CCCcHHHHHHHHH
Q 036857 29 ATDFDMNKALVDDY-------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 29 ~~~~~~k~~l~~~~-------~G-PGtGKT~la~aiA 57 (170)
.+++.+++.+...+ +| ||||||+++..++
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 46788888776543 69 9999999876665
No 248
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.35 E-value=0.049 Score=48.08 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|+.+|
T Consensus 41 vGlpGSGKSTia~~La 56 (520)
T 2axn_A 41 VGLPARGKTYISKKLT 56 (520)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 249
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.31 E-value=0.25 Score=43.74 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||+++++|+
T Consensus 300 ~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 300 LGPNGIGKTTFARILV 315 (538)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 250
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.05 Score=42.36 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 8 ~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 8 EGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.31 E-value=0.049 Score=44.75 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=26.3
Q ss_pred ceeEeeechhhhccC-----Cccc--hHHHHHHHHHhhchhccCCCCeEEEEe
Q 036857 69 RSILVIEDAVTSFES-----NAYN--SVALSALLKFVDGLWSSSGDGRILVMT 114 (170)
Q Consensus 69 p~il~iDEiD~~~~~-----~~~~--~~~~~~ll~~lDg~~~~~~~~~~vi~t 114 (170)
+.+|++|.+..+... .... ...+++++..|..+... .++.||++
T Consensus 204 ~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~--~~~~Vi~~ 254 (324)
T 2z43_A 204 IKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEV--YDIAVIIT 254 (324)
T ss_dssp EEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHH--HTCEEEEE
T ss_pred CCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 778999999887641 1111 23466777777766542 35555554
No 252
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.24 E-value=0.054 Score=44.69 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+++.|+
T Consensus 96 ~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQ 111 (312)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHH
Confidence 49 9999999999999
No 253
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.20 E-value=0.057 Score=43.04 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+.|+.||
T Consensus 14 ~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 14 LGAPGAGKGTQANFIK 29 (230)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.15 E-value=0.053 Score=44.23 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++|..+|
T Consensus 104 ~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 104 AGVFGSGKTQIMHQSC 119 (322)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999888
No 255
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.13 E-value=0.076 Score=46.65 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| +|+|||++|+.++
T Consensus 158 ~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 158 HGRAGSGKSVIASQAL 173 (549)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 89 9999999999998
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.11 E-value=0.057 Score=44.07 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.|+
T Consensus 37 ~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIY 52 (290)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.09 E-value=0.057 Score=39.87 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|.+.++
T Consensus 8 vG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLM 23 (184)
T ss_dssp ESCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.08 E-value=0.06 Score=41.64 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| +|+|||++++.+++
T Consensus 29 vGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 49 99999999999993
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.07 E-value=0.058 Score=44.82 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 128 ~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 128 FGEFRTGKTQLSHTLC 143 (343)
T ss_dssp ECCTTCTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999988
No 260
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.04 E-value=0.065 Score=37.92 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++++++
T Consensus 7 ~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLL 22 (161)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.01 E-value=0.06 Score=44.86 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=13.6
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+||||+++.++
T Consensus 99 GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 99 GSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 262
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.00 E-value=0.033 Score=44.11 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.++
T Consensus 30 eG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 30 EGNIAAGKSTFVNILK 45 (263)
T ss_dssp ECSTTSSHHHHHTTTG
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 263
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.98 E-value=0.058 Score=46.61 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.+|
T Consensus 45 vGlpGsGKSTia~~La 60 (469)
T 1bif_A 45 VGLPARGKTYISKKLT 60 (469)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.94 E-value=0.057 Score=45.11 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||++++.++
T Consensus 137 ~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLA 152 (349)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999998
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.94 E-value=0.067 Score=38.75 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.++++
T Consensus 9 vG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 9 IGNPNVGKSTIFNALT 24 (165)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 266
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.88 E-value=0.064 Score=37.78 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 9 ~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLI 24 (166)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.86 E-value=0.041 Score=42.55 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=10.1
Q ss_pred cc-CCCcHHHHHHHHH-cc
Q 036857 43 WG-PYTGKSSLIAAMA-DL 59 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA-~~ 59 (170)
-| +|+|||++++.++ +.
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECSCC----CHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 39 9999999999998 54
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.81 E-value=0.068 Score=40.64 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 10 vGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLF 25 (198)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 269
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.81 E-value=0.071 Score=38.27 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 10 ~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFA 25 (175)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHh
Confidence 49 9999999999998
No 270
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.80 E-value=0.071 Score=37.89 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 11 ~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYC 26 (168)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.76 E-value=0.066 Score=43.89 Aligned_cols=15 Identities=27% Similarity=0.343 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 74 ~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 74 AARPSMGKTAFALKQA 89 (315)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.69 E-value=0.071 Score=40.74 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 7 ~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKAS 22 (189)
T ss_dssp ESCCSSCHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHH
Confidence 49 9999999999999
No 273
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.65 E-value=0.068 Score=39.88 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+.++
T Consensus 35 vG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 49 9999999999999
No 274
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.65 E-value=0.074 Score=39.74 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.++++
T Consensus 11 vG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFT 26 (199)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 49 9999999999999
No 275
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.60 E-value=0.077 Score=37.51 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 10 ~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFM 25 (168)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 276
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.59 E-value=0.84 Score=37.30 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=23.2
Q ss_pred CCCCCCcccccCChhhHHHhhcCc-----------------------cc-CCCcHHHHHH
Q 036857 19 FEHPATSNTIATDFDMNKALVDDY-----------------------WG-PYTGKSSLIA 54 (170)
Q Consensus 19 ~~~p~~~~~v~~~~~~k~~l~~~~-----------------------~G-PGtGKT~la~ 54 (170)
..+..+|+++.+++.+.+.+...= .+ .|+|||..+-
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH
Confidence 334457888888888777765321 37 9999997543
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.59 E-value=0.21 Score=44.88 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=39.0
Q ss_pred eeEeeechhhhccCCccchHHHHHHHHHhhchhccCCCCeEEEEeCCCCC--CCCCCCCCCCccceEEEcCCCCc
Q 036857 70 SILVIEDAVTSFESNAYNSVALSALLKFVDGLWSSSGDGRILVMTTDYKD--HIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 70 ~il~iDEiD~~~~~~~~~~~~~~~ll~~lDg~~~~~~~~~~vi~tTN~~~--~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
.+|+|||+..++.... ......+..+-..- ..-++.+|++|.++. .|+..+. .-|..+|-|...+.
T Consensus 345 ivvVIDE~~~L~~~~~---~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Ir--an~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---KKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIK--ANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHTC---HHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHH--HTCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhhh---HHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHH--hhhccEEEEEcCCH
Confidence 5899999988875221 12223333332221 135888899888887 6776554 24556666665544
No 278
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.49 E-value=0.08 Score=37.82 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 8 vG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 8 VGESGVGKSTLAGTFG 23 (169)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999996
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.49 E-value=0.069 Score=43.60 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+++.++
T Consensus 86 ~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQ 101 (308)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 280
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.49 E-value=0.072 Score=47.19 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=13.9
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++++++|
T Consensus 402 GlsGsGKSTIa~~La 416 (511)
T 1g8f_A 402 NSLTVSREQLSIALL 416 (511)
T ss_dssp TTCCSCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 9 9999999999999
No 281
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.46 E-value=0.072 Score=44.38 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||||++.|+
T Consensus 176 vG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLA 191 (365)
T ss_dssp ECCTTSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 282
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.45 E-value=0.082 Score=37.33 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 9 ~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 9 LGSGGVGKSALTVQFV 24 (167)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 283
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.37 E-value=0.084 Score=37.45 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 9 ~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFV 24 (167)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 284
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.35 E-value=0.12 Score=50.43 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++++.++
T Consensus 422 vG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp ECCSSSSHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999998
No 285
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.30 E-value=0.086 Score=37.49 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 9 ~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFV 24 (172)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 286
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.24 E-value=0.083 Score=41.12 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||+++..+|
T Consensus 20 ~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 20 VGTAGSGKTTLTGEFG 35 (262)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 287
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.23 E-value=0.29 Score=46.22 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| -|+|||++.|.++
T Consensus 679 tGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 679 TGPNMGGKSSYIKQVA 694 (918)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred ECCCCCchHHHHHHHH
Confidence 39 8999999999998
No 288
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.21 E-value=0.078 Score=47.53 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||||||+++.++.
T Consensus 170 ~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 170 SGGPGTGKTTTVAKLL 185 (608)
T ss_dssp ECCTTSTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999887765
No 289
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.18 E-value=0.079 Score=37.75 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 8 vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 8 LGAPGVGKSALARIFG 23 (166)
T ss_dssp EESTTSSHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHc
Confidence 49 9999999999997
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.12 E-value=0.44 Score=45.09 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| -|+|||++.|.+|
T Consensus 668 tGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 668 TGPNMGGKSTYIRQTG 683 (934)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999995
No 291
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.05 E-value=0.093 Score=38.33 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.++++
T Consensus 13 vG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALT 28 (188)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 292
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.01 E-value=0.096 Score=37.34 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 12 ~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYC 27 (170)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 293
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.00 E-value=0.096 Score=37.16 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 12 ~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFV 27 (170)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 294
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.98 E-value=0.097 Score=37.24 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 12 ~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFV 27 (170)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999998
No 295
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.98 E-value=0.097 Score=37.15 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 9 ~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFV 24 (170)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 296
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.93 E-value=0.098 Score=37.65 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 13 ~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYV 28 (177)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 297
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.91 E-value=0.09 Score=38.51 Aligned_cols=15 Identities=60% Similarity=0.846 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.++++
T Consensus 10 vG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALA 25 (172)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 298
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.88 E-value=0.099 Score=37.65 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 12 ~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFA 27 (178)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999998
No 299
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.86 E-value=0.091 Score=39.75 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.+++
T Consensus 36 ~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTI 51 (221)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 300
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.86 E-value=0.1 Score=37.07 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 6 ~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLK 21 (164)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 301
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.84 E-value=0.086 Score=41.36 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.0
Q ss_pred c-CCCcHHHHHHHHHccccc
Q 036857 44 G-PYTGKSSLIAAMADLDLK 62 (170)
Q Consensus 44 G-PGtGKT~la~aiA~~~l~ 62 (170)
| +|||||++++.++++++.
T Consensus 16 GgigsGKStv~~~l~~~g~~ 35 (210)
T 4i1u_A 16 GGIGSGKTTVADLFAARGAS 35 (210)
T ss_dssp CCTTSCHHHHHHHHHHTTCE
T ss_pred CCCCCCHHHHHHHHHHCCCc
Confidence 8 999999999999954443
No 302
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.83 E-value=0.1 Score=38.30 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++.+++
T Consensus 27 vG~~~~GKSsli~~l~ 42 (190)
T 3con_A 27 VGAGGVGKSALTIQLI 42 (190)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 303
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.79 E-value=0.1 Score=38.77 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| -|+|||++.|+++
T Consensus 39 ~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 39 NGDLGAGKTTLTRGML 54 (158)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 304
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.76 E-value=0.03 Score=42.48 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 32 vG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.69 E-value=0.1 Score=39.48 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=13.4
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||+++..++
T Consensus 11 G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 11 GYKHSGKTTLMEKWV 25 (169)
T ss_dssp CCTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 306
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.69 E-value=0.27 Score=42.41 Aligned_cols=15 Identities=40% Similarity=0.395 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++|..+|
T Consensus 8 ~GptgsGKttla~~La 23 (409)
T 3eph_A 8 AGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EECSSSSHHHHHHHHH
T ss_pred ECcchhhHHHHHHHHH
Confidence 49 9999999999999
No 307
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.68 E-value=0.09 Score=37.81 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 15 ~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFA 30 (181)
T ss_dssp ECCTTSCHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 308
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.68 E-value=0.1 Score=37.17 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 9 ~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999998
No 309
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.61 E-value=0.098 Score=39.70 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..++
T Consensus 44 vG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLI 59 (226)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 310
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.56 E-value=0.27 Score=38.73 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| .|+|||+.+..+|
T Consensus 34 tG~MgsGKTT~lL~~a 49 (214)
T 2j9r_A 34 CGSMFSGKSEELIRRV 49 (214)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 69 7999999888877
No 311
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.52 E-value=0.11 Score=37.33 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 14 ~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYV 29 (182)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 312
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.48 E-value=0.11 Score=37.67 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 17 ~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYT 32 (195)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 313
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.46 E-value=0.11 Score=37.93 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 7 ~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEBTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.40 E-value=0.11 Score=43.01 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.|+
T Consensus 132 vGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLI 147 (305)
T ss_dssp ECSSSSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 59 9999999999999
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.40 E-value=0.12 Score=37.26 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 14 ~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIR 29 (178)
T ss_dssp ESCTTTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 316
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.40 E-value=0.095 Score=40.92 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 36 iG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 36 IGASGSGKSTLLYILG 51 (224)
T ss_dssp EECTTSCHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 317
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.39 E-value=0.11 Score=37.30 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++.++.
T Consensus 20 ~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFM 35 (179)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 318
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.37 E-value=0.12 Score=38.04 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++..++.
T Consensus 54 vG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLT 69 (193)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 319
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.36 E-value=0.31 Score=47.43 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++++.++
T Consensus 1065 vG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp ECSSSTTHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 320
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.36 E-value=0.11 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+++.
T Consensus 15 ~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFI 30 (181)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 321
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.33 E-value=0.12 Score=37.08 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 21 ~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFT 36 (179)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.24 E-value=0.12 Score=40.10 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++++++
T Consensus 25 ~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 25 IGASGVGRSHIKNALL 40 (197)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999999
No 323
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.22 E-value=0.12 Score=41.03 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 30 iG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 30 LGPTGAGKSVFLELIA 45 (240)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 324
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.19 E-value=0.11 Score=39.24 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.7
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..++
T Consensus 9 ~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 9 TGPMYSGKTTELLSFV 24 (184)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999986665
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.18 E-value=0.13 Score=36.75 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 13 ~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQ 28 (171)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999997
No 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.09 E-value=0.12 Score=37.71 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|++.+.
T Consensus 20 vG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIY 35 (198)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999887
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.07 E-value=0.13 Score=38.93 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||+++++++
T Consensus 12 ~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLI 27 (174)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 328
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.04 E-value=0.11 Score=40.83 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| .|+||||+.++++
T Consensus 38 G~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 38 GPSGSGKSTMLNIIG 52 (235)
T ss_dssp CSTTSSHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHh
Confidence 9 9999999999999
No 329
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.03 E-value=0.13 Score=37.31 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 10 ~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 10 VGADGVGKSALTIQLI 25 (189)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 330
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.03 E-value=0.13 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.+++
T Consensus 18 ~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLT 33 (218)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999999
No 331
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.01 E-value=0.13 Score=37.46 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 13 ~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 13 LGESSVGKSSIVLRLT 28 (208)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 332
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.01 E-value=0.13 Score=40.22 Aligned_cols=15 Identities=47% Similarity=0.450 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+||||+.++++
T Consensus 22 ~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 22 SAPSGAGKSSLIQALL 37 (219)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 333
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.99 E-value=0.12 Score=37.87 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 13 ~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFA 28 (184)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 334
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.96 E-value=0.13 Score=40.06 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+.++.++
T Consensus 13 G~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 13 GPEGAGKSTNRDYLA 27 (213)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 335
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.95 E-value=0.088 Score=46.95 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+||||++++||
T Consensus 375 iG~sGSGKSTLar~La 390 (552)
T 3cr8_A 375 TGLSGAGKSTLARALA 390 (552)
T ss_dssp EESSCHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHH
Confidence 49 9999999999999
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.92 E-value=0.12 Score=37.87 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 29 ~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 29 AGRSNVGKSSFINSLI 44 (195)
T ss_dssp EEBTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.86 E-value=0.12 Score=40.75 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++|+
T Consensus 37 ~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALL 52 (237)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.84 E-value=0.14 Score=37.01 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 24 ~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFM 39 (187)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 339
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.84 E-value=0.12 Score=40.99 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 9 vG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 9 VGNPNVGKTTIFNALT 24 (271)
T ss_dssp EECSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.83 E-value=0.14 Score=37.06 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 11 ~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYT 26 (186)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 341
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.81 E-value=0.14 Score=37.71 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|++++.
T Consensus 31 ~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 31 IGESGVGKTNLLSRFT 46 (193)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 342
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.75 E-value=0.14 Score=37.15 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 24 ~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFF 39 (183)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.74 E-value=0.12 Score=41.35 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++|+
T Consensus 38 iG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCIN 53 (262)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 344
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.74 E-value=0.11 Score=37.58 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 13 vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFL 28 (178)
T ss_dssp ECCGGGCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.73 E-value=0.06 Score=43.83 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=10.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||++|+.++
T Consensus 12 G~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCC---CCTHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 346
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.71 E-value=0.098 Score=40.56 Aligned_cols=15 Identities=40% Similarity=0.423 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||||.++++
T Consensus 28 iG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKA 43 (208)
T ss_dssp ECCTTSSTTHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 347
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.71 E-value=0.13 Score=46.80 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCCcccccCChhhHHHhhcC--------c--cc-CCCcHHHHHHHHH
Q 036857 21 HPATSNTIATDFDMNKALVDD--------Y--WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 21 ~p~~~~~v~~~~~~k~~l~~~--------~--~G-PGtGKT~la~aiA 57 (170)
.+..|..-......++++... + -| ||+|||++|++++
T Consensus 26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 445566666667777766553 2 49 9999999999999
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.67 E-value=0.13 Score=37.44 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++..++.
T Consensus 29 ~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEBTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 349
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.63 E-value=0.06 Score=40.28 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.++++
T Consensus 32 vG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 32 AGRSNAGKSSALNTLT 47 (210)
T ss_dssp EECTTSSHHHHHTTTC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.61 E-value=0.15 Score=36.78 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 16 ~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFK 31 (180)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 49 9999999999998
No 351
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.58 E-value=0.17 Score=38.65 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=21.1
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccceEEEcCCCCc
Q 036857 106 GDGRILVMTTDYKDHIDPVPLRPSCMDMHFHLSSHTF 142 (170)
Q Consensus 106 ~~~~~vi~tTN~~~~lD~AllRpgR~d~~i~~~~p~~ 142 (170)
..+.++|=|.........+.++ ..|..|-.-.|+.
T Consensus 131 ~yD~viiD~pp~~~~~~~~~l~--~aD~viiv~~~~~ 165 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHLTRGTAK--AVDMMIAVIEPNL 165 (254)
T ss_dssp CCSEEEEEECTTCTTCCHHHHT--TCSEEEEEECSSH
T ss_pred CCCEEEEeCCCcccHHHHHHHH--HCCEEEEecCCCH
Confidence 3567777666555554444453 5666776666666
No 352
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.55 E-value=0.14 Score=38.08 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 29 vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.55 E-value=0.14 Score=42.09 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.+|
T Consensus 108 vG~nGsGKTTll~~La 123 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLG 123 (304)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 49 9999999999999
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.51 E-value=0.15 Score=36.79 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 14 ~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYT 29 (182)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 355
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.46 E-value=0.08 Score=39.92 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 8 vG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMM 23 (171)
T ss_dssp EESCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.45 E-value=0.14 Score=45.88 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||++|++++
T Consensus 403 GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 403 GYMNSGKDAIARALQ 417 (573)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 357
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.44 E-value=0.14 Score=37.15 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 16 ~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 358
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.40 E-value=0.14 Score=39.27 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|||||++++.+|
T Consensus 12 ~g~~GsGk~ti~~~la 27 (201)
T 3fdi_A 12 GREFGSGGHLVAKKLA 27 (201)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHH
Confidence 38 9999999999999
No 359
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.37 E-value=0.15 Score=42.07 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.+|
T Consensus 110 vG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLA 125 (306)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHH
Confidence 49 9999999999999
No 360
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.33 E-value=0.15 Score=36.99 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 12 ~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 361
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.28 E-value=0.15 Score=42.35 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.++++
T Consensus 61 ~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALG 76 (337)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 362
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.28 E-value=0.15 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 24 ~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFN 39 (186)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 363
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.24 E-value=0.15 Score=40.38 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| .|+||||+.+.|++
T Consensus 35 ~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ECSTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 39 99999999999994
No 364
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.21 E-value=0.16 Score=37.57 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 34 ~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 34 FGRAGVGKSALVVRFL 49 (196)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 365
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.21 E-value=0.15 Score=43.21 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 35 lGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIA 50 (372)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHHH
Confidence 49 9999999999999
No 366
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.21 E-value=0.15 Score=42.38 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||+++.+++
T Consensus 85 ~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 85 TGVPGVGKSTAIEALG 100 (355)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 367
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.19 E-value=0.15 Score=43.25 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|+||
T Consensus 43 lGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIA 58 (372)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHH
Confidence 49 9999999999999
No 368
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.15 E-value=0.15 Score=40.30 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++|+
T Consensus 34 ~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLE 49 (243)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 369
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.14 E-value=0.15 Score=40.55 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.+.|+
T Consensus 41 ~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 370
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.13 E-value=0.15 Score=41.08 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 43 iG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLT 58 (266)
T ss_dssp ECCTTSCHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999999
No 371
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.12 E-value=0.17 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 27 vG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFL 42 (187)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999998
No 372
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.12 E-value=0.15 Score=40.69 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 39 iG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 39 IGPNGSGKSTLINVIT 54 (257)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 373
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.10 E-value=0.17 Score=37.19 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 28 vG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYA 43 (189)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 374
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.06 E-value=0.17 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|++.+.
T Consensus 26 vG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYL 41 (184)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999887
No 375
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.04 E-value=0.27 Score=38.62 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 27 vG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 27 VGRTGAGKSATGNSIL 42 (247)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 59 9999999999998
No 376
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.99 E-value=0.15 Score=41.01 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+||||+.++|+
T Consensus 8 vG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EESSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 377
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.98 E-value=0.16 Score=42.71 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++|+.+|
T Consensus 13 ~GptgSGKTtla~~La 28 (340)
T 3d3q_A 13 VGPTASGKTELSIEVA 28 (340)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCcCcHHHHHHHHH
Confidence 49 9999999999999
No 378
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.97 E-value=0.17 Score=37.27 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 29 vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFS 44 (194)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 379
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=88.95 E-value=0.4 Score=44.34 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.|.+|
T Consensus 582 ~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 582 TGPNMAGKSTFLRQTA 597 (765)
T ss_dssp ESCSSSSHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHH
Confidence 49 9999999999998
No 380
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.94 E-value=1.6 Score=35.19 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.7
Q ss_pred ceeEeeechhhhcc
Q 036857 69 RSILVIEDAVTSFE 82 (170)
Q Consensus 69 p~il~iDEiD~~~~ 82 (170)
-.+|++||+|.+..
T Consensus 146 ~~~iIiDEah~~~~ 159 (395)
T 3pey_A 146 IKIFVLDEADNMLD 159 (395)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CCEEEEEChhhhcC
Confidence 56899999998865
No 381
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.90 E-value=0.16 Score=37.79 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 30 vG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHH
Confidence 59 9999999999999
No 382
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.90 E-value=0.16 Score=38.86 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|+|||++|..+|
T Consensus 5 ~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 5 TGGARSGKSRHAEALI 20 (180)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999998
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.89 E-value=0.18 Score=37.40 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 14 ~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYV 29 (207)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 384
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.87 E-value=0.26 Score=42.35 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=27.3
Q ss_pred CCCcccccCChhhHHHhhcCc---------cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDDY---------WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~~---------~G-PGtGKT~la~aiA 57 (170)
..+++++.+.++.+..+...+ .| .|+||||+.++++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 456888888887655443322 49 9999999999998
No 385
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.87 E-value=0.14 Score=37.65 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 22 vG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EESTTSSHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.87 E-value=0.18 Score=37.27 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|+.++.
T Consensus 20 ~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 20 VGSGGVGKSALTLQFM 35 (206)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.86 E-value=0.18 Score=37.66 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|...+.
T Consensus 12 vG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFA 27 (192)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999997
No 388
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.85 E-value=0.14 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 31 vG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEETTSSHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 389
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.82 E-value=0.17 Score=39.83 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||++++.++
T Consensus 28 G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 28 GIDGSGKTTQSHLLA 42 (223)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 390
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.80 E-value=0.18 Score=37.00 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 26 ~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFC 41 (189)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.80 E-value=0.13 Score=43.23 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|.||
T Consensus 32 lGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 32 LGPTGAGKTLFLELIA 47 (348)
T ss_dssp ECCCTHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHH
Confidence 49 9999999999999
No 392
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.78 E-value=0.16 Score=42.60 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||+++..+|
T Consensus 52 aG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 52 GARPSMGKTSLMMNMV 67 (338)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 38 9999999999998
No 393
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.78 E-value=0.18 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 14 ~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYA 29 (203)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 394
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.77 E-value=0.67 Score=43.09 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| -|+|||++.|.++
T Consensus 613 tGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 613 TGPNMGGKSTYMRQTA 628 (800)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHH
Confidence 49 9999999999999
No 395
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=88.74 E-value=0.16 Score=39.81 Aligned_cols=15 Identities=13% Similarity=-0.124 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|||||++++.+|
T Consensus 20 ~g~~gsGk~~i~~~la 35 (223)
T 3hdt_A 20 EREYGSGGRIVGKKLA 35 (223)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHH
Confidence 48 9999999999999
No 396
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.68 E-value=0.19 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 28 ~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIA 43 (188)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 397
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.67 E-value=0.16 Score=40.80 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||||.++|+
T Consensus 56 iG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLN 71 (263)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred EcCCCCcHHHHHHHHH
Confidence 39 9999999999999
No 398
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.66 E-value=0.17 Score=37.24 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 29 ~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHh
Confidence 59 9999999999998
No 399
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.60 E-value=0.17 Score=39.92 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.+.++
T Consensus 38 ~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIA 53 (240)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.55 E-value=0.17 Score=40.12 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| ||+|||+.++.++
T Consensus 34 G~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 34 GLEGAGKSTAIQVVV 48 (236)
T ss_dssp ESTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999998
No 401
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.19 Score=36.63 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 21 ~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFT 36 (195)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 402
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.53 E-value=0.17 Score=39.58 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 40 ~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIM 55 (229)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 403
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.18 Score=36.94 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 22 ~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFS 37 (187)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.53 E-value=0.22 Score=41.85 Aligned_cols=15 Identities=47% Similarity=0.496 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++..+|
T Consensus 46 ~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLA 61 (339)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 405
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.52 E-value=0.18 Score=40.41 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=14.6
Q ss_pred cc-CCCcHHHHHHHHHc
Q 036857 43 WG-PYTGKSSLIAAMAD 58 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA~ 58 (170)
.| .|+||||+.+.|++
T Consensus 52 ~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECCTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 39 99999999999993
No 406
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.50 E-value=0.18 Score=36.79 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 27 ~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 27 VGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEETTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 407
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.18 Score=37.21 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 29 vG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 408
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.42 E-value=0.15 Score=38.14 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|+++++
T Consensus 29 vG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFG 44 (195)
T ss_dssp ECSTTSSHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999996
No 409
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.41 E-value=0.17 Score=43.71 Aligned_cols=15 Identities=27% Similarity=0.343 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|..+|
T Consensus 203 aG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 203 AARPSMGKTAFALKQA 218 (444)
T ss_dssp EECSSSSHHHHHHHHH
T ss_pred EeCCCCChHHHHHHHH
Confidence 38 9999999999998
No 410
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.40 E-value=0.14 Score=40.40 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=11.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||+.++.++
T Consensus 31 eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 31 EGIDGAGKTTHLQWFC 46 (227)
T ss_dssp ECCC---CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 411
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.38 E-value=0.18 Score=39.33 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++++
T Consensus 41 iG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTIS 56 (214)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.37 E-value=0.17 Score=40.68 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||||.+.|+
T Consensus 51 ~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQ 66 (271)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 413
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.35 E-value=0.14 Score=37.03 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 24 ~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEETTSSHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 414
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.34 E-value=0.18 Score=40.35 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++|+
T Consensus 52 ~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLY 67 (260)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.32 E-value=0.19 Score=36.95 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| -|+|||++++||+
T Consensus 32 ~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 32 VGANGSGKSNIGDAIL 47 (182)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 69 9999999999998
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.32 E-value=0.2 Score=37.19 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 34 ~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLC 49 (199)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 417
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.31 E-value=0.18 Score=41.18 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++..+|
T Consensus 111 vG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 418
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.30 E-value=0.19 Score=40.20 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.++++
T Consensus 31 ~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMI 46 (261)
T ss_dssp ECSTTCSHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHH
Confidence 49 9999999999999
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.28 E-value=0.2 Score=37.49 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 13 vG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 420
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.26 E-value=0.18 Score=39.63 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++|..++
T Consensus 40 ~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 40 TGDSGVGKSETALELV 55 (205)
T ss_dssp ECCCTTTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 421
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.25 E-value=1.2 Score=34.44 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.5
Q ss_pred cc-CCCcHH-HHHHHHH
Q 036857 43 WG-PYTGKS-SLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT-~la~aiA 57 (170)
|| .|+||| .|.+++.
T Consensus 26 yG~MgsGKTt~Ll~~i~ 42 (195)
T 1w4r_A 26 LGPMFSGKSTELMRRVR 42 (195)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 79 999999 7888887
No 422
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.23 E-value=0.21 Score=36.80 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 27 ~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFT 42 (191)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 49 9999999999998
No 423
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.20 E-value=0.19 Score=36.83 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 14 vG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999999998
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.19 E-value=0.19 Score=39.35 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||+.++.++
T Consensus 12 G~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 12 GLDRTGKTTQCNILY 26 (216)
T ss_dssp ECSSSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 425
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.15 E-value=0.2 Score=41.68 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+||||+++.+|
T Consensus 135 vG~nGaGKTTll~~La 150 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLA 150 (328)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 426
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.12 E-value=0.62 Score=44.46 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| -|+|||++.|.++
T Consensus 795 tGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 795 TGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHH
Confidence 49 9999999999998
No 427
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.09 E-value=0.2 Score=41.03 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+++.+|
T Consensus 106 vG~nGsGKTTll~~La 121 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLA 121 (302)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 428
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.04 E-value=0.14 Score=39.74 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=14.6
Q ss_pred c-CCCcHHHHHHHHHcc
Q 036857 44 G-PYTGKSSLIAAMADL 59 (170)
Q Consensus 44 G-PGtGKT~la~aiA~~ 59 (170)
| .|+||||+++.+++.
T Consensus 27 G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 27 GNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CSTTSCHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 9 999999999999844
No 429
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.03 E-value=0.18 Score=41.03 Aligned_cols=15 Identities=47% Similarity=0.550 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.++|+
T Consensus 175 ~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAIN 190 (301)
T ss_dssp ECSTTSSHHHHHHHHS
T ss_pred ECCCCCcHHHHHHHhc
Confidence 49 9999999999998
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.00 E-value=0.22 Score=37.06 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 26 ~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFV 41 (213)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.00 E-value=0.2 Score=40.76 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+||||+.++++
T Consensus 171 ~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT 186 (302)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999997
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.91 E-value=0.19 Score=42.86 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=13.8
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| .||||||+.|+||
T Consensus 54 GpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 54 GRTGSGKSTLLSAFL 68 (390)
T ss_dssp ESTTSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHh
Confidence 9 9999999999999
No 433
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=87.90 E-value=1.1 Score=39.47 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..+|
T Consensus 159 fgg~G~GKT~L~~~i~ 174 (482)
T 2ck3_D 159 FGGAGVGKTVLIMELI 174 (482)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ecCCCCChHHHHHHHH
Confidence 69 9999999998887
No 434
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.90 E-value=0.21 Score=36.61 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|..++.
T Consensus 23 ~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 23 CGLDNSGKTTIINQVK 38 (199)
T ss_dssp ECCTTSCHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999998
No 435
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.90 E-value=0.21 Score=39.63 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 11 vG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALT 26 (258)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 436
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.88 E-value=0.19 Score=40.64 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||||.+.|+
T Consensus 53 iG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILN 68 (279)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999999
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.88 E-value=0.2 Score=40.17 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.++|+
T Consensus 39 iG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVA 54 (266)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999999
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.83 E-value=0.23 Score=36.75 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+++.
T Consensus 26 ~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYT 41 (201)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.82 E-value=0.21 Score=37.78 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 34 vG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFA 49 (205)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 69 9999999999998
No 440
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.76 E-value=0.23 Score=38.03 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| +|+|||++++.+.
T Consensus 7 ~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLF 22 (186)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999997
No 441
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.76 E-value=0.22 Score=38.41 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=14.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 35 vG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 35 VGKTGAGKSATGNSIL 50 (239)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHc
Confidence 59 9999999999999
No 442
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.74 E-value=0.22 Score=40.06 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 9 vG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLIT 24 (272)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 443
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.73 E-value=0.2 Score=39.85 Aligned_cols=15 Identities=53% Similarity=0.634 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.+.++
T Consensus 32 iG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMA 47 (249)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHh
Confidence 39 9999999999999
No 444
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=87.72 E-value=0.33 Score=42.87 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=18.4
Q ss_pred cCChhhHHHhhcCc-----cc-CCCcHHHHHHH
Q 036857 29 ATDFDMNKALVDDY-----WG-PYTGKSSLIAA 55 (170)
Q Consensus 29 ~~~~~~k~~l~~~~-----~G-PGtGKT~la~a 55 (170)
.+++++++.+...- .| ||||||+++-.
T Consensus 9 ~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 9 SLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp TCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHH
T ss_pred cCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHH
Confidence 35677777665321 59 99999986543
No 445
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.71 E-value=0.21 Score=39.70 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 7 vG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 7 IGNPNCGKTTLFNALT 22 (256)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 446
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.70 E-value=0.2 Score=40.22 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.+.++
T Consensus 36 ~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAIS 51 (263)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.70 E-value=0.2 Score=40.01 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||||.++|+
T Consensus 47 ~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECCTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 448
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.59 E-value=0.22 Score=36.78 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 32 vG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 32 IGSRGVGKTSLMERFT 47 (192)
T ss_dssp ECSTTSSHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 449
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.59 E-value=0.32 Score=40.64 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.++
T Consensus 41 ~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 41 LAKPGAGKSFTAKMLL 56 (392)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 450
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.53 E-value=0.13 Score=43.16 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .||||||+.|.||
T Consensus 37 lGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIA 52 (353)
T ss_dssp ECSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 49 9999999999999
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.50 E-value=0.13 Score=37.31 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=4.5
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 14 ~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFS 29 (183)
T ss_dssp ECCCCC----------
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999997
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.48 E-value=0.24 Score=38.19 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=13.5
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| .|+||||.++.++
T Consensus 9 G~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 9 GPEGSGKTTVINEVY 23 (205)
T ss_dssp CCTTSCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 9 9999999999998
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.48 E-value=0.22 Score=38.74 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=13.7
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| +|+|||+.++.++
T Consensus 10 G~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 10 GLEGAGKTTARNVVV 24 (213)
T ss_dssp ECTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 9 9999999999999
No 454
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.47 E-value=0.23 Score=36.51 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 24 ~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 455
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.44 E-value=0.22 Score=39.70 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+||||+.+.++
T Consensus 37 ~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLL 52 (253)
T ss_dssp ECCSSSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 39 9999999999999
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.41 E-value=0.23 Score=37.56 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 40 vG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.40 E-value=0.21 Score=43.71 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++.++
T Consensus 287 ~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 287 TGATGTGKTLLVSRFV 302 (525)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 59 9999999999999
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.39 E-value=0.23 Score=37.12 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 15 ~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYT 30 (212)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 459
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.38 E-value=0.23 Score=41.32 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+||||+..+++
T Consensus 80 vG~pgaGKSTLln~L~ 95 (349)
T 2www_A 80 SGPPGAGKSTFIEYFG 95 (349)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.36 E-value=0.23 Score=37.03 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++++.
T Consensus 31 ~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.33 E-value=0.23 Score=36.98 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 31 vG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 31 VGDGACGKTCLLIVFS 46 (201)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999998
No 462
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.31 E-value=0.23 Score=37.15 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 31 vG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFS 46 (207)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 463
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.29 E-value=0.23 Score=43.57 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
|| ||+|||++++.++
T Consensus 157 ~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 157 FGGAGVGKTVLIQELI 172 (473)
T ss_dssp ECCSSSCHHHHHHHHH
T ss_pred ECCCCCCccHHHHHHH
Confidence 79 9999999999887
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.28 E-value=0.16 Score=37.26 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++.+++.
T Consensus 27 ~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 27 LGLDNSGKTTIINKLK 42 (190)
T ss_dssp EECTTSSHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 465
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.27 E-value=0.23 Score=44.10 Aligned_cols=15 Identities=40% Similarity=0.683 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| ||+|||++|+.++
T Consensus 378 ~G~~GsGKSTia~~La 393 (546)
T 2gks_A 378 TGLPCAGKSTIAEILA 393 (546)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.25 E-value=0.25 Score=37.01 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|.+++.
T Consensus 31 vG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYT 46 (217)
T ss_dssp ESCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 467
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.20 E-value=0.25 Score=38.87 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=13.4
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| ||+|||+++..++
T Consensus 18 tG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 18 TGPMFAGKTAELIRRL 33 (223)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 59 9999999988877
No 468
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.12 E-value=0.23 Score=36.86 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 35 ~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLK 50 (192)
T ss_dssp EESTTSSHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999997
No 469
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.10 E-value=0.25 Score=41.79 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||||+++|+
T Consensus 221 vG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALL 236 (358)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHh
Confidence 49 9999999999999
No 470
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.04 E-value=0.24 Score=37.80 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 35 vG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVS 50 (228)
T ss_dssp ECSTTSSHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 471
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=86.90 E-value=0.26 Score=40.01 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|..++.
T Consensus 14 vG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLL 29 (301)
T ss_dssp ECSSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 472
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.82 E-value=0.26 Score=36.86 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 35 vG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 35 VGDASVGKTCVVQRFK 50 (201)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 473
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.82 E-value=1.1 Score=39.29 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|+|||+|+..||
T Consensus 158 fgg~G~GKt~Ll~~Ia 173 (469)
T 2c61_A 158 FSASGLPHNEIALQIA 173 (469)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 68 9999999999998
No 474
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.69 E-value=0.26 Score=36.89 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 36 vG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYT 51 (204)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHH
Confidence 59 9999999999998
No 475
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.65 E-value=0.26 Score=36.58 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++++++.
T Consensus 39 vG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFA 54 (199)
T ss_dssp ECCTTSCCTTTTTSSB
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999987
No 476
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.65 E-value=0.21 Score=36.59 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 28 ~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 28 LGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEETTSSHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999997
No 477
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=86.53 E-value=1.2 Score=39.39 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| +|+|||.++.-++
T Consensus 171 fgg~GvGKT~L~~~l~ 186 (498)
T 1fx0_B 171 FGGAGVGKTVLIMELI 186 (498)
T ss_dssp EECSSSSHHHHHHHHH
T ss_pred ecCCCCCchHHHHHHH
Confidence 69 9999999998887
No 478
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.42 E-value=0.26 Score=40.69 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=14.0
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.+++
T Consensus 62 ~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFG 77 (341)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 49 9999999999998
No 479
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.40 E-value=0.28 Score=42.49 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 103 vG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 103 VGVQGSGKTTTAGKLA 118 (433)
T ss_dssp CCCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999998
No 480
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.33 E-value=0.29 Score=41.21 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=23.8
Q ss_pred CCCcccccCChhhHHHhhcC---c--cc-CCCcHHHHHHHHH
Q 036857 22 PATSNTIATDFDMNKALVDD---Y--WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 22 p~~~~~v~~~~~~k~~l~~~---~--~G-PGtGKT~la~aiA 57 (170)
+.+++++.+++..+.-.... + -| +|+|||++.++++
T Consensus 116 ~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 116 IPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp CCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred cCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHH
Confidence 44677776655444322110 0 49 9999999999999
No 481
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.30 E-value=0.39 Score=38.51 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
+| .|+|||++|-.+|
T Consensus 47 ~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 47 YGKGGIGKSTTSSNLS 62 (307)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHH
Confidence 59 9999999999888
No 482
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.19 E-value=0.28 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.8
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.+.
T Consensus 26 vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVF 41 (196)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999887
No 483
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.19 E-value=0.82 Score=36.14 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=10.6
Q ss_pred cc-CCCcHHH-HHHHH
Q 036857 43 WG-PYTGKSS-LIAAM 56 (170)
Q Consensus 43 ~G-PGtGKT~-la~ai 56 (170)
+| .|+|||+ +.+.+
T Consensus 34 tG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 34 TGSMFSGKSEELIRRL 49 (219)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 7999999 44544
No 484
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.15 E-value=0.31 Score=37.46 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+|...+.
T Consensus 43 vG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFA 58 (211)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 59 9999999999997
No 485
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.10 E-value=0.47 Score=37.10 Aligned_cols=14 Identities=29% Similarity=0.100 Sum_probs=13.1
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
+ .|+|||++|-.+|
T Consensus 35 ~kGGvGKTT~a~~LA 49 (267)
T 3k9g_A 35 IKGGVGKSTSAIILA 49 (267)
T ss_dssp SSSSSCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHH
Confidence 5 9999999999998
No 486
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.09 E-value=0.42 Score=37.29 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=13.0
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| .|+|||++|..+|
T Consensus 8 ~KGGvGKTT~a~nLA 22 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLT 22 (269)
T ss_dssp ECTTSSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 7 8999999999888
No 487
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.09 E-value=0.3 Score=39.67 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||++++.+|
T Consensus 104 ~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 104 VGLQGSGKTTTAAKLA 119 (295)
T ss_dssp ECCTTTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 488
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.07 E-value=0.22 Score=43.21 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=13.9
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 248 ~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 248 TSGSGMVMSTFVRQQA 263 (503)
T ss_dssp EESSCHHHHHHHHHHH
T ss_pred eecCCCCchHHHHHHH
Confidence 49 9999999999988
No 489
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.01 E-value=0.29 Score=39.84 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+|.+.++
T Consensus 24 vG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 24 VGESGLGKSTLINSLF 39 (301)
T ss_dssp EEETTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999988
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.00 E-value=0.22 Score=42.96 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++..+|
T Consensus 105 vG~~GvGKTTla~~La 120 (432)
T 2v3c_C 105 VGIQGSGKTTTAAKLA 120 (432)
T ss_dssp ECCSSSSTTHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 491
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.93 E-value=0.48 Score=39.37 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=13.4
Q ss_pred c-CCCcHHHHHHHHH
Q 036857 44 G-PYTGKSSLIAAMA 57 (170)
Q Consensus 44 G-PGtGKT~la~aiA 57 (170)
| .|+|||++|-++|
T Consensus 23 gkGGvGKTt~a~~lA 37 (334)
T 3iqw_A 23 GKGGVGKTTTSCSLA 37 (334)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 8 9999999999999
No 492
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=85.89 E-value=0.33 Score=36.77 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++.+++.
T Consensus 33 vG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLA 48 (214)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 493
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.80 E-value=0.52 Score=36.00 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHH
Q 036857 45 PYTGKSSLIAAMA 57 (170)
Q Consensus 45 PGtGKT~la~aiA 57 (170)
.|+|||++|-.+|
T Consensus 14 GGvGKTt~a~~LA 26 (245)
T 3ea0_A 14 GGDGGSCIAANFA 26 (245)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCcchHHHHHHHH
Confidence 9999999999998
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=85.79 E-value=0.3 Score=38.97 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=14.3
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||++..++.
T Consensus 9 vG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 59 9999999999998
No 495
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.75 E-value=0.25 Score=40.87 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| .|+|||++.++++
T Consensus 177 ~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIM 192 (330)
T ss_dssp EESTTSCHHHHHHHGG
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 496
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.67 E-value=0.34 Score=36.71 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| ||+|||+++.++.
T Consensus 19 ~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFT 34 (223)
T ss_dssp ESCTTSSHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHh
Confidence 59 9999999999998
No 497
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.66 E-value=0.3 Score=40.78 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
-| .|+||||++++++
T Consensus 181 vG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 181 AGETGSGKTTLMKALM 196 (361)
T ss_dssp EESSSSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 39 9999999999999
No 498
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.53 E-value=0.33 Score=40.05 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=14.1
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| +|+|||+++..+|
T Consensus 111 vG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMA 126 (320)
T ss_dssp ESSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 49 9999999999999
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.46 E-value=0.26 Score=38.82 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=14.2
Q ss_pred cc-CCCcHHHHHHHHH
Q 036857 43 WG-PYTGKSSLIAAMA 57 (170)
Q Consensus 43 ~G-PGtGKT~la~aiA 57 (170)
.| .|+|||++.++|+
T Consensus 33 ~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFV 48 (227)
T ss_dssp HSCCSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHh
Confidence 49 9999999999999
No 500
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.42 E-value=0.52 Score=35.93 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHH
Q 036857 45 PYTGKSSLIAAMA 57 (170)
Q Consensus 45 PGtGKT~la~aiA 57 (170)
.|+|||+++..+|
T Consensus 10 GGvGKTT~a~~LA 22 (209)
T 3cwq_A 10 GGVGKTTTAVHLS 22 (209)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8999999999998
Done!