Query 036858
Match_columns 160
No_of_seqs 129 out of 867
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.9E-43 4E-48 263.3 19.4 150 1-155 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.3E-36 2.9E-41 225.4 19.7 147 4-155 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 4E-18 8.7E-23 122.0 17.3 138 5-152 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 6.6E-15 1.4E-19 105.3 20.1 108 3-123 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 1.1E-14 2.3E-19 105.8 16.4 133 6-152 1-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 7.1E-14 1.5E-18 101.2 15.6 137 6-151 1-139 (142)
7 cd08865 SRPBCC_10 Ligand-bindi 99.6 2.2E-13 4.7E-18 97.2 16.3 136 6-152 1-138 (140)
8 cd07819 SRPBCC_2 Ligand-bindin 99.6 4.4E-13 9.4E-18 96.2 17.3 136 4-151 2-139 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.6 2.1E-13 4.6E-18 98.7 14.4 134 7-153 2-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 6E-12 1.3E-16 90.1 16.7 106 5-123 2-107 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.5 1.3E-11 2.8E-16 88.2 16.8 109 6-123 2-111 (141)
12 cd07812 SRPBCC START/RHO_alpha 99.4 1.6E-11 3.4E-16 85.5 15.7 135 7-150 2-139 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.4 3.1E-11 6.6E-16 89.3 16.5 113 5-128 2-117 (146)
14 cd07825 SRPBCC_7 Ligand-bindin 99.4 2.2E-11 4.8E-16 88.2 14.6 139 6-152 2-143 (144)
15 cd07814 SRPBCC_CalC_Aha1-like 99.4 4.9E-11 1.1E-15 85.4 14.7 136 6-152 2-137 (139)
16 cd05018 CoxG Carbon monoxide d 99.3 1E-10 2.3E-15 84.1 15.1 139 5-151 2-142 (144)
17 cd07817 SRPBCC_8 Ligand-bindin 99.3 1.4E-10 3E-15 83.1 14.4 107 5-125 1-107 (139)
18 PF03364 Polyketide_cyc: Polyk 99.3 1.7E-10 3.8E-15 82.2 14.6 126 12-148 1-129 (130)
19 cd07818 SRPBCC_1 Ligand-bindin 99.3 1.7E-10 3.7E-15 84.2 14.6 111 5-125 3-118 (150)
20 cd07820 SRPBCC_3 Ligand-bindin 99.3 1.3E-10 2.9E-15 84.2 13.0 107 6-123 1-111 (137)
21 cd07824 SRPBCC_6 Ligand-bindin 99.3 5.3E-10 1.1E-14 81.9 15.8 108 6-125 3-113 (146)
22 PRK10724 hypothetical protein; 99.3 3.1E-10 6.6E-15 85.1 14.5 134 4-150 15-149 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 6.6E-10 1.4E-14 81.4 14.3 139 7-152 2-144 (146)
24 COG5637 Predicted integral mem 99.0 2.7E-09 5.9E-14 80.8 10.0 107 4-125 70-178 (217)
25 COG3427 Carbon monoxide dehydr 99.0 1.1E-08 2.4E-13 75.4 13.1 140 5-154 2-145 (146)
26 PF06240 COXG: Carbon monoxide 98.9 7.8E-08 1.7E-12 70.3 14.8 134 9-152 2-139 (140)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.7E-07 3.7E-12 69.6 13.1 130 3-156 10-139 (157)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 1.6E-07 3.5E-12 67.7 12.0 138 5-153 2-144 (145)
29 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 2.6E-06 5.6E-11 60.6 13.4 133 5-152 1-134 (136)
30 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 3.3E-06 7.2E-11 61.2 13.7 134 6-153 2-138 (139)
31 cd08900 SRPBCC_CalC_Aha1-like_ 98.5 1.5E-05 3.3E-10 57.9 16.2 137 6-153 2-142 (143)
32 cd08876 START_1 Uncharacterize 98.5 2.1E-05 4.6E-10 60.0 17.7 144 4-152 41-194 (195)
33 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 6.7E-06 1.5E-10 60.0 14.2 137 6-153 2-141 (142)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 2.7E-05 5.9E-10 56.8 16.9 136 5-153 1-145 (146)
35 cd08897 SRPBCC_CalC_Aha1-like_ 98.4 1.2E-05 2.6E-10 57.8 13.1 128 5-153 1-132 (133)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 5.9E-05 1.3E-09 55.0 16.2 134 6-153 2-145 (146)
37 cd08891 SRPBCC_CalC Ligand-bin 98.3 5.6E-05 1.2E-09 55.3 14.4 137 6-153 2-148 (149)
38 COG2867 Oligoketide cyclase/li 98.2 1E-05 2.2E-10 59.6 8.4 112 4-125 2-113 (146)
39 cd08901 SRPBCC_CalC_Aha1-like_ 98.2 5E-05 1.1E-09 54.9 11.4 129 6-155 2-133 (136)
40 COG3832 Uncharacterized conser 98.2 0.00022 4.8E-09 52.7 14.8 139 4-153 8-148 (149)
41 PF08327 AHSA1: Activator of H 98.1 0.0002 4.4E-09 49.9 13.1 122 13-152 1-123 (124)
42 cd08892 SRPBCC_Aha1 Putative h 98.0 0.00038 8.2E-09 49.7 13.3 122 6-152 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 97.7 0.00048 1E-08 49.8 9.7 121 12-152 1-126 (132)
44 cd08874 START_STARD9-like C-te 97.4 0.019 4.1E-07 44.8 15.2 123 5-131 46-183 (205)
45 cd08873 START_STARD14_15-like 97.3 0.047 1E-06 43.5 16.4 147 4-155 77-235 (235)
46 COG4276 Uncharacterized conser 97.1 0.045 9.7E-07 40.0 13.1 114 3-125 1-119 (153)
47 cd08877 START_2 Uncharacterize 97.0 0.086 1.9E-06 40.9 15.1 146 3-153 45-213 (215)
48 cd08863 SRPBCC_DUF1857 DUF1857 96.8 0.12 2.6E-06 38.1 15.5 98 6-124 2-108 (141)
49 cd08913 START_STARD14-like Lip 96.7 0.22 4.8E-06 39.8 15.5 144 5-155 82-240 (240)
50 cd00177 START Lipid-binding ST 96.6 0.17 3.8E-06 37.4 16.6 141 4-150 39-190 (193)
51 cd08870 START_STARD2_7-like Li 96.6 0.23 4.9E-06 38.5 15.5 146 3-153 49-207 (209)
52 cd08905 START_STARD1-like Chol 96.3 0.11 2.4E-06 40.4 11.5 144 5-153 50-207 (209)
53 cd08906 START_STARD3-like Chol 96.2 0.41 8.9E-06 37.3 16.0 144 4-152 49-206 (209)
54 cd08903 START_STARD5-like Lipi 96.2 0.42 9.1E-06 37.1 15.9 143 6-153 48-206 (208)
55 cd08868 START_STARD1_3_like Ch 95.8 0.62 1.3E-05 35.9 15.4 144 6-153 50-206 (208)
56 PF08982 DUF1857: Domain of un 95.8 0.53 1.2E-05 34.9 14.0 98 6-124 2-108 (149)
57 cd08871 START_STARD10-like Lip 95.8 0.7 1.5E-05 36.0 16.0 145 5-155 48-203 (222)
58 cd08911 START_STARD7-like Lipi 95.7 0.7 1.5E-05 35.8 15.9 145 4-153 45-205 (207)
59 cd08914 START_STARD15-like Lip 95.1 1.4 3E-05 35.3 15.1 115 4-123 78-205 (236)
60 smart00234 START in StAR and p 94.3 1.7 3.7E-05 32.9 16.9 146 4-154 45-202 (206)
61 cd08867 START_STARD4_5_6-like 93.7 2.4 5.3E-05 32.5 15.8 143 5-152 47-205 (206)
62 PF10698 DUF2505: Protein of u 92.9 2.9 6.2E-05 31.0 13.1 109 6-124 1-128 (159)
63 cd08910 START_STARD2-like Lipi 92.7 3.8 8.1E-05 31.7 13.6 143 4-153 49-205 (207)
64 cd08872 START_STARD11-like Cer 92.3 4.7 0.0001 32.0 14.3 142 5-155 53-227 (235)
65 cd08869 START_RhoGAP C-termina 90.7 6.2 0.00013 30.2 15.5 119 5-128 45-172 (197)
66 KOG3177 Oligoketide cyclase/li 86.7 4.7 0.0001 31.7 7.5 104 10-125 74-182 (227)
67 PF01852 START: START domain; 79.7 23 0.0005 26.5 17.4 148 3-157 45-205 (206)
68 cd08904 START_STARD6-like Lipi 75.6 36 0.00077 26.4 14.3 140 5-150 47-201 (204)
69 PF11485 DUF3211: Protein of u 75.4 29 0.00064 25.4 10.9 41 5-48 2-42 (136)
70 cd08908 START_STARD12-like C-t 74.3 39 0.00085 26.3 13.6 119 4-127 52-178 (204)
71 PRK06628 lipid A biosynthesis 47.8 36 0.00077 27.6 4.5 23 137-159 259-281 (290)
72 cd00222 CollagenBindB Collagen 46.1 40 0.00087 26.0 4.3 73 12-92 3-75 (187)
73 PRK06553 lipid A biosynthesis 42.6 43 0.00094 27.3 4.3 43 117-159 258-300 (308)
74 TIGR02208 lipid_A_msbB lipid A 39.7 51 0.0011 26.8 4.2 39 117-159 249-287 (305)
75 PRK05645 lipid A biosynthesis 37.7 57 0.0012 26.3 4.2 40 116-159 238-277 (295)
76 KOG2936 Uncharacterized conser 35.6 1.7E+02 0.0037 24.3 6.6 93 4-117 173-268 (301)
77 PRK08419 lipid A biosynthesis 34.0 82 0.0018 25.4 4.6 23 137-159 259-281 (298)
78 PRK08734 lipid A biosynthesis 31.3 80 0.0017 25.7 4.1 22 138-159 257-278 (305)
79 PRK06860 lipid A biosynthesis 31.3 81 0.0018 25.7 4.2 40 116-159 251-290 (309)
80 PRK08733 lipid A biosynthesis 30.8 86 0.0019 25.5 4.2 40 116-159 248-287 (306)
81 TIGR02777 LigD_PE_dom DNA liga 30.6 93 0.002 23.3 3.9 60 52-125 50-110 (156)
82 PRK08706 lipid A biosynthesis 30.2 79 0.0017 25.4 3.9 39 117-159 233-271 (289)
83 PRK08943 lipid A biosynthesis 29.4 91 0.002 25.5 4.2 40 116-159 257-296 (314)
84 TIGR02207 lipid_A_htrB lipid A 28.4 99 0.0021 25.0 4.2 39 117-159 246-284 (303)
85 PF03000 NPH3: NPH3 family; I 26.7 46 0.001 26.9 1.9 17 142-158 220-236 (258)
86 PF13410 GST_C_2: Glutathione 25.8 1.3E+02 0.0029 17.9 3.6 23 134-156 4-26 (69)
87 PF11647 PMT_C: C-terminal reg 25.8 94 0.002 19.8 2.9 19 140-158 43-61 (66)
88 PRK14681 hypothetical protein; 25.4 2.8E+02 0.006 20.7 5.8 69 82-157 60-128 (158)
89 cd07984 LPLAT_LABLAT-like Lyso 25.3 1.4E+02 0.003 21.8 4.3 23 137-159 162-184 (192)
90 cd08902 START_STARD4-like Lipi 25.1 3.4E+02 0.0073 21.2 14.2 141 6-152 49-201 (202)
91 PRK05646 lipid A biosynthesis 24.9 1.1E+02 0.0025 24.8 4.0 39 117-159 250-288 (310)
92 PF02021 UPF0102: Uncharacteri 24.5 2.2E+02 0.0048 19.0 5.0 66 83-156 14-79 (93)
93 PF03279 Lip_A_acyltrans: Bact 23.3 1.6E+02 0.0035 23.5 4.6 41 115-159 246-286 (295)
94 PF11979 DUF3480: Domain of un 23.1 4.6E+02 0.0099 22.4 7.2 42 112-153 262-308 (356)
95 PF00028 Cadherin: Cadherin do 22.6 2.2E+02 0.0047 18.1 4.9 12 79-90 28-39 (93)
96 PRK07920 lipid A biosynthesis 20.8 1.3E+02 0.0029 24.3 3.6 23 137-159 252-274 (298)
97 PRK14680 hypothetical protein; 20.7 3.4E+02 0.0073 19.6 6.2 68 82-157 23-90 (134)
98 PRK06946 lipid A biosynthesis 20.2 1.8E+02 0.0039 23.5 4.2 21 139-159 255-275 (293)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.9e-43 Score=263.27 Aligned_cols=150 Identities=42% Similarity=0.636 Sum_probs=137.7
Q ss_pred CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCc-cEEEEEeeCCCceeeeEEEEEEEecCC
Q 036858 1 MGVITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAG-SIKKITFAEGGQVNDVKHKIEEVDKVN 79 (160)
Q Consensus 1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~G-svr~~~~~~g~~~~~~kErl~~~D~~~ 79 (160)
|++++++.|+++++||+++|++++ +.++++|+++|++|++++++||||++| |||.|+|.+|++.+.+|||++.+|++|
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 999999999999999999999996 788899999999999999999998877 999999999999999999999999999
Q ss_pred ceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhC
Q 036858 80 LKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLAN 155 (160)
Q Consensus 80 ~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~ 155 (160)
++++|+++||+++.. |++|..++++.|.++|+|+++|+++|++.+++.++|+. .++++..|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~~-~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~---~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLGD-YKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEK---YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGTT-TEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEecccccc-EEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHH---HHHHHHHHHHHHHHHHhcC
Confidence 999999999998865 99999999999999989999999999999987755544 3457999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=1.3e-36 Score=225.40 Aligned_cols=147 Identities=37% Similarity=0.579 Sum_probs=128.8
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccc-cccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCcee
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFP-KIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~p-k~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
++++.+++|+||||+||++++ ||.+.+| .|+| .|++|++++|+|++||||.|+|.+|+++.+++|||+++|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 478999999999999999995 9984344 4666 799999999999999999999998887789999999999999999
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhC
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLAN 155 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~ 155 (160)
+|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+. +++.+..+++++++|++.+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEE---IKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHH---HHhHHHHHHHHHHHHHhcC
Confidence 999999998755699999999999998789999999999999887555555 3457888899999988753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.81 E-value=4e-18 Score=122.05 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=111.6
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.++.+++|++|+++||+++. |+.+ +++|+|. ++++++.++..++|+++.+.+..| ..+++++..+|+.++.++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEE
Confidence 57889999999999999996 9999 8999997 788898776556899999998766 3788999999998788999
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYL 152 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 152 (160)
++.+|+.. +.++..+++|.|.++|+|.++|+..|++.+. .+.+.......+.....++.|.++|
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPLP---VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCCC---cccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99987432 5678899999999887899999999998765 2223222235556777788887775
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.71 E-value=6.6e-15 Score=105.29 Aligned_cols=108 Identities=17% Similarity=0.404 Sum_probs=87.3
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCcee
Q 036858 3 VITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
|.+++.+++|+|||++||++++ |+.+ +++|+|. +.++++.+++ ++|..+.+.... + ..+++++..+|++++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g--~-~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAG--R-GTVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECS--C-SEEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEecc--c-cceeEEEEEecCCCcEE
Confidence 4689999999999999999996 9999 8999996 8899987633 345556665433 1 37999999999889999
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEE
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYT 123 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~ 123 (160)
.|++. . .++.++..++++.|.++| |.|+|+.+|++
T Consensus 74 ~~~~~--~---~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV--P---SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE--S---SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE--e---cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 1 235678999999999864 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.66 E-value=1.1e-14 Score=105.80 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=96.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCcc-------EEEEEeeCCCceeeeEEEEEEEecC
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGS-------IKKITFAEGGQVNDVKHKIEEVDKV 78 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gs-------vr~~~~~~g~~~~~~kErl~~~D~~ 78 (160)
++.++.|++||++||+++. |+++ +|+|+|+ +++++++++.+. +. .+.+...- ...+..++.+.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~ 73 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKF---EARVVLELREREEF 73 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeee---eEEEEEEEEEecCC
Confidence 4678999999999999996 9999 8999997 889998876531 21 11111100 12345556666766
Q ss_pred CceeEEEEEecCccccCceeEEEEEEEEecCC-CCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 79 NLKTSYSIIEGAILADQLEKISYDNQWVPSPD-GGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 79 ~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~-g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
++.+.|++++|+ +..+.+++++.|.++ |+|.++|...|++... .|....+. ..+.+..+++.|.+.+
T Consensus 74 ~~~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 74 PRELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred CceEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999885 356899999999987 6899999999998753 33444443 4555677777776654
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.61 E-value=7.1e-14 Score=101.20 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=92.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEee-CCCceeeeEEEEEEEecCCceeEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFA-EGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++++++|++|+++||+++. |+.+ +|+|+|. .+++.++++++...++.+... .|....+ +....+|++.+.+.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW--TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE--EEEEEEcCCCCEEEE
Confidence 4689999999999999996 9999 9999996 455555543322245656665 3332222 334457887888999
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAY 151 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~y 151 (160)
..+++... +..+.++++|.|.++++|.|+|..+|+.....+.+...... ..+.+..+++.|-++
T Consensus 75 ~~~~~~~~---~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 75 RQEEPPPP---VASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred EEeeCCCC---hhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHH
Confidence 98875332 56789999999998778999999999987643333332222 222244555555443
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=2.2e-13 Score=97.21 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=95.7
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.+++|+||+++||+++. |+.+ +|+|.|. +.+++.+.++ .++|+...+....++..-.+++++..+|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 4678999999999999996 9999 8999997 6778876544 46788888876544333457888888884 577899
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
+..+|++ .+..++++.+.++ +|.++|+.+|....-.......++. .......+++.|.+++
T Consensus 77 ~~~~~~~------~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 77 RGSSGPF------PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EecCCCc------ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 8876532 2588999999865 7999999999873211111222222 3334555666666554
No 8
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=4.4e-13 Score=96.19 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=91.0
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEeeCCCceeeeEEEEEEEecCCcee
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
.+++.+++|+|||++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+.+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 478999999999999999996 9999 8999997 8899986654 3333344445443321111112222 223 6779
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHH
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAY 151 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~y 151 (160)
+|+..+|.. ...+..++++.|.++ +|.|+|+.++++... .+.-..+. .+.....+++.|.+|
T Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEGEG----NRSQEGSYTLTPKGD-GTRVTFDLTVELTVP--LPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEecccc----eeEEEEEEEEEECCC-CEEEEEEEEEEecCC--CCHHHHHHhhhHHHHHHHHhHhhh
Confidence 999988752 456789999999976 799999999998653 33333222 222244555555544
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.56 E-value=2.1e-13 Score=98.69 Aligned_cols=134 Identities=14% Similarity=0.204 Sum_probs=98.7
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEE
Q 036858 7 ESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSI 86 (160)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v 86 (160)
+.+++|++|++.||+++. |+++ +|+|+|+ +.+++++++++ .+....+...-++....+..++. ++. .++++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 678999999999999996 9999 9999997 88999998775 33444455543332334445554 666 66789998
Q ss_pred EecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHHh
Q 036858 87 IEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYLL 153 (160)
Q Consensus 87 ieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl~ 153 (160)
++|+ ++.+.+++++.|.++|+|.|+|...|++.+. .+...++. ..+....+++++.+.+.
T Consensus 76 ~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR--LLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8884 4567999999999888999999999999753 22333332 45556677777766554
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.49 E-value=6e-12 Score=90.14 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.+++|+||+++||+++. |+.+ +|+|+|+ ++++++..+..++|+...++...+. .+..++.++++.+ .+++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence 67899999999999999996 9999 8999997 8889876543267776666644332 5667788888655 5788
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEE
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYT 123 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~ 123 (160)
+... +. ..+..+++|.+.++++|.++|+.+|..
T Consensus 75 ~~~~-~~-----~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPA-PG-----ISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EecC-CC-----EEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 7543 21 245689999998767899999888774
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.46 E-value=1.3e-11 Score=88.21 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=81.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCC-CceeeeEEEEEEEecCCceeEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEG-GQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g-~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.++.|+||+++||+++. |+.+ +|+|+|. +..++... .++|+...+.+..+ +......+++.++|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6889999999999999996 9999 8999986 55554321 46677777776543 2334677888888875 46899
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEE
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYT 123 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~ 123 (160)
+...++.. .-....+++|.|.++++|.++|...|..
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 98766532 1245688999998667899999877764
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.6e-11 Score=85.47 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=94.7
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEE
Q 036858 7 ESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYS 85 (160)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
+.++.|++|+++||+++. |+.+ +++|+|. +.++++.++. ...|....+....+ .......++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 578999999999999996 9999 8999997 7888877654 35566666555422 22356778887777 6678999
Q ss_pred EEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCcc--CChhhhhhHHHHHHHHHHHHHH
Q 036858 86 IIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELE--VTEEQFNAGKEKSAAMVKALEA 150 (160)
Q Consensus 86 vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~--~~~~~~~~~~~~~~~~~k~ie~ 150 (160)
...++.. ..+..++++.+.++++|.++|+..+....... ..+...+...+.+..+++.++.
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 8877653 35689999999876589999999999765431 1222222233344555555544
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.41 E-value=3.1e-11 Score=89.31 Aligned_cols=113 Identities=15% Similarity=0.223 Sum_probs=82.6
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEe-eCCCceeeeEEEEEEEecCCcee
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITF-AEGGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~-~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
..+++++|++||++||+++. |+.+ +|.|+|. +.++++++.++ +.|+--.+.. ..|.+..+..++. +|...+++
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEE
Confidence 46799999999999999996 9999 9999997 77899887653 4553222223 2333334444442 68888888
Q ss_pred EEE-EEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCcc
Q 036858 83 SYS-IIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELE 128 (160)
Q Consensus 83 ~y~-vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~ 128 (160)
.++ ...| ++.+....++|+|.++ ||.|++..+|+..++.+
T Consensus 77 ~~~~~~~~-----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~ 117 (146)
T cd08860 77 RARRVETG-----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAP 117 (146)
T ss_pred EEEEecCC-----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCCc
Confidence 874 2222 2678899999999976 49999999999775543
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=2.2e-11 Score=88.22 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=91.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC--CCCccEEEEEeeC-CCceeeeEEEEEEEecCCcee
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD--GGAGSIKKITFAE-GGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~--g~~Gsvr~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (160)
++.+++|+|||++||+++. |+.+ +|+|.|... ......++ -.+|+...+.... |++ ..+..++.++++..+ +
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~~-l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENRL-I 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCCE-E
Confidence 6789999999999999996 9999 899998522 22222333 3778888777653 333 345667777777665 8
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHH
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYL 152 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 152 (160)
+|+..-.+.. ......++++.+.++|+|.++++..|...+...................++.|++||
T Consensus 77 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 9985411111 123467888999877789999999888654311001111112345677788888876
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.37 E-value=4.9e-11 Score=85.36 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=90.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.+++|+||+++||+++. |+.+ +|+|+|. +..++.....| |+.+.+....++..-.+..++.++|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 6789999999999999996 9999 8999995 22222211222 666655444333334678888888866 568999
Q ss_pred EEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHH
Q 036858 86 IIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYL 152 (160)
Q Consensus 86 vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 152 (160)
...++... .-....++.|.|.+ ++|.++|+.++...... ........+.....++..|.+||
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDETP--GPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCCCC--CCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 88765311 22468889999997 57999999998865321 12222224445556666666665
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.34 E-value=1e-10 Score=84.12 Aligned_cols=139 Identities=11% Similarity=0.147 Sum_probs=85.8
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.+++|++|+++||+++. |+.+ +++|+|+ +++++.+++++ ......+.+...+..-..+-++..+|+. +.+.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEE
Confidence 57889999999999999996 9999 8999997 77887665332 1111112221111111124455555544 55777
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCc-cCChhhhhh-HHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGEL-EVTEEQFNA-GKEKSAAMVKALEAY 151 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~-~~~~~~~~~-~~~~~~~~~k~ie~y 151 (160)
+....+.. ....+..++++.|. +++|.++|+.+|+..+.. ..+...++. ..+.+..+++.|-+.
T Consensus 77 ~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 77 TGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 76543221 13468999999998 568999999999976532 223333332 333344555555443
No 17
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.4e-10 Score=83.11 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
+++.+++|+||+++||+++. |+.+ +|+|.|. +++++++.+. +.-..+.+..|. ......++..+++ ++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGL-SVEWDAEITEQVP-NERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCC-cEEEEEEEeccCC-CCEEEE
Confidence 36889999999999999996 9999 8999997 7888876442 222223333333 2345555555555 445899
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
....|.. .+..+++|.+.++++|.+++++.|++..
T Consensus 73 ~~~~~~~------~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 73 RSVEGAD------PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred EECCCCC------CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 8766542 3478889999877789999999999765
No 18
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.31 E-value=1.7e-10 Score=82.23 Aligned_cols=126 Identities=17% Similarity=0.322 Sum_probs=84.2
Q ss_pred EcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEEEecCc
Q 036858 12 YAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSIIEGAI 91 (160)
Q Consensus 12 i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~ 91 (160)
|+||+++||+++. |+.+ +|+|+|. ++++++++.++. +..-.+....++.......++. .+.... +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVT-EDPPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEE-EECTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEE-EEEeee-eeeeecCCC-
Confidence 7899999999996 9999 9999997 889999987754 3333455554433234455554 344444 777777775
Q ss_pred cccCceeEEEEEEEEecCC--CCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHH
Q 036858 92 LADQLEKISYDNQWVPSPD--GGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKAL 148 (160)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~--g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~i 148 (160)
++++..++++.|.++ |||.++++.+|+.....+.+...... ..+....++++|
T Consensus 74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999975 36777788888775544444444332 333344444444
No 19
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.7e-10 Score=84.19 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=79.7
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceee---EEEE--cCCCCCccEEEEEeeCCCceeeeEEEEEEEecCC
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKN---IDVV--EGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVN 79 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s---~e~~--eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~ 79 (160)
+++.++.|++|+++||+++. |+.+ +|+|+|. ... ++.. +++.++|+...++...+. .....++..+++ +
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-N 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-C
Confidence 68899999999999999996 9999 8999995 332 2221 233478888777655421 133455666665 5
Q ss_pred ceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 80 LKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 80 ~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
+++.|+...++... .+...++.|.|. ++||.++|+.+|+...
T Consensus 77 ~~i~~~~~~~~~~~---~~~~~~~~~~~~-~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 77 ERIEYELRFIKPFE---ATNDVEFTLEPV-GGGTKVTWGMSGELPF 118 (150)
T ss_pred cEEEEEEEecCCcc---ccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence 66999987544321 246899999999 4579999999998654
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=1.3e-10 Score=84.22 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=83.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC---CCCccEEEEEeeCCC-ceeeeEEEEEEEecCCce
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD---GGAGSIKKITFAEGG-QVNDVKHKIEEVDKVNLK 81 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~---g~~Gsvr~~~~~~g~-~~~~~kErl~~~D~~~~~ 81 (160)
++.+++|+||+++||+.+. |..+ +|+|+|+ +.++++++.+ ..+|+.-.+.+..++ +..+ +-++..+++ ++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~~it~~~p-~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TTEITEVEP-PRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EEEEEEEcC-CCe
Confidence 4689999999999999996 9999 8999997 7789887433 255788888877554 3334 555566664 455
Q ss_pred eEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEE
Q 036858 82 TSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYT 123 (160)
Q Consensus 82 ~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~ 123 (160)
++++.+.|. +..+..+..|.|.++ ||.+++.++|+.
T Consensus 76 f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 76 FVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 888887765 345688999999876 799999999997
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=5.3e-10 Score=81.88 Aligned_cols=108 Identities=14% Similarity=0.262 Sum_probs=77.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEc--CCCCCccEEEEEeeCC-CceeeeEEEEEEEecCCcee
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVE--GDGGAGSIKKITFAEG-GQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~e--G~g~~Gsvr~~~~~~g-~~~~~~kErl~~~D~~~~~~ 82 (160)
++.+.+|+||+++||+++. |+.+ +|+|+|+ ++++++++ ++.++|+...+..... +....+.-++.+++ ..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence 5678999999999999996 9999 8999997 88998886 3346776655443322 21123444555544 45568
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
+++. +|++. ...+++|.|.++ ||.|+++.+++..+
T Consensus 79 ~~~~-~g~~~------~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDLE------GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEeee------EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8885 56532 268889999754 79999999999744
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.27 E-value=3.1e-10 Score=85.14 Aligned_cols=134 Identities=13% Similarity=0.235 Sum_probs=95.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeE
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
-+++.++.|++|++++|+++. |.++ .|+|+|. .+++++++.++. +.+..++..-++-......|.. +++.+ ++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 478899999999999999996 9999 9999997 677888766532 2344444443333345556654 45444 799
Q ss_pred EEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHH
Q 036858 84 YSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEA 150 (160)
Q Consensus 84 y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~ 150 (160)
++.++|+ ++++.+.|+|.|.++++|.|++..+|+.... .....++. ..+.+..|.+++++
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999885 4678999999999877899999999997652 22222222 34445666666665
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=6.6e-10 Score=81.37 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=82.9
Q ss_pred EEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeee--EEEEEEEecCCceeEE
Q 036858 7 ESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDV--KHKIEEVDKVNLKTSY 84 (160)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~--kErl~~~D~~~~~~~y 84 (160)
+.+++|++||++||+++. |+.+ ++.|+|+ +++++.. |++.. .-.+++..|+-...+ +=++..++.+.+++++
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 578999999999999996 9999 8999997 7777754 32222 122333322211112 2245555556777877
Q ss_pred EEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCc-cCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGEL-EVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 85 ~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~-~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
+.-..+....+--....++++.|. +++|.++|.++++..+.. ......++. ..+.+..+++.|.+.+
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 754311110101135677888884 468999999999865532 223333332 4444556666665543
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.03 E-value=2.7e-09 Score=80.75 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=86.6
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEee--CCCceeeeEEEEEEEecCCce
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFA--EGGQVNDVKHKIEEVDKVNLK 81 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~~ 81 (160)
..++.+++|++|+|.||..++ |+.+ +|.||.+ +.||++.+... -+|+.. .|..++|-.|-. =|..+..
T Consensus 70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it--~d~~~e~ 139 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT--KDIPGER 139 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeehhh--ccCCCcE
Confidence 678999999999999999996 9999 8999985 99999875543 235543 445566666643 3889999
Q ss_pred eEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 82 TSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 82 ~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
|.|.-++|.-+++ +..++|.+.++..|.|+.+..|.+-+
T Consensus 140 I~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 140 IQWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred EeeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCc
Confidence 9999999976544 78999999988788999999998644
No 25
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.03 E-value=1.1e-08 Score=75.37 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=97.7
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCC--ceeeeEEEEEEEecCCcee
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGG--QVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~--~~~~~kErl~~~D~~~~~~ 82 (160)
.++-+++|++|+++||+.+. |+.. +..-+|+ ++|++. +|+.-.+ .+.+.-|. .--..+-++..+|+..+++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~-~g~e~~~---~v~l~ig~l~~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVET-NGDEYTA---KVKLKIGPLKGTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeee-cCCeEEE---EEEEeecceeEEEEEEEEEccccCCCcEE
Confidence 35778999999999999996 9999 7789998 999984 5653212 22223231 1123455667778999998
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCC-ccCChhhhhh-HHHHHHHHHHHHHHHHhh
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGE-LEVTEEQFNA-GKEKSAAMVKALEAYLLA 154 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~-~~~~~~~~~~-~~~~~~~~~k~ie~yl~~ 154 (160)
+.+.-+|..- ..-+....+.+.|.++| |++.|.+.-+-.+. ...-.+.++. +.+.+..+++.|.++|.+
T Consensus 75 ~i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 75 TINGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred EEEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887664432 24566888888888765 99999998776543 2334555553 666788889999888754
No 26
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.94 E-value=7.8e-08 Score=70.31 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=83.6
Q ss_pred EEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCC-ce-eeeEEEEEEEecCCceeEEEE
Q 036858 9 NDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGG-QV-NDVKHKIEEVDKVNLKTSYSI 86 (160)
Q Consensus 9 e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~-~~-~~~kErl~~~D~~~~~~~y~v 86 (160)
+++|++|+++||+.+. |..+ +-+.+|+ +++++.+. +.-.+. ++..-|. +. -..+=++..+|++++.. .++
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 6899999999999996 9999 7799998 88998775 421122 2222221 11 12344566677777652 444
Q ss_pred EecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCC-ccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 87 IEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGE-LEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 87 ieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~-~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
-..+... -.+..+.+++...++++|.+.|+++++..+- .......++. +.+.+..+++.|++.|
T Consensus 74 ~g~g~~~--~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 74 EGRGRGG--GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEEECTC--CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCcc--ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333322 2356777888877766699999999997664 2344455553 4555667777776654
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.82 E-value=1.7e-07 Score=69.63 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=85.7
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCcee
Q 036858 3 VITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKT 82 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (160)
..+++.+++|+||+++||+++. |+.+ +++|+|. . ..+-.+|....+.+...+. .....++.++|+.+ .+
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~~-~l 78 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALT-DPER-LARWFAP-G------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPPR-LL 78 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCC-C------CCCcccCceEEEEecCCCC-CccceEEEEEcCCc-EE
Confidence 4578999999999999999996 9998 8999984 2 1232455555555543211 24456777777765 47
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCC
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANP 156 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~ 156 (160)
.|+...++ . ....+++|.+.+ |+|.++.+..+.+.. +......++-..++..|.+||-+++
T Consensus 79 ~~~~~~~~-~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGG-G-----ESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCC-C-----CceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 88875444 1 126677888875 578888777765433 1111123456677888888887665
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=1.6e-07 Score=67.68 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=79.3
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
.++.+++|+||+++||+++. |... +++|+|... .....+.+..| .+.+..+ ......-++..+++.++ +.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~~~-l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPPRR-FSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeCCCcE-EEE
Confidence 57899999999999999996 9998 899999632 11111222222 2333322 10134456666666655 678
Q ss_pred EEEecC----ccccCceeEEEEEEEEecCCCCceEEEEEE-EEEcCCccCChhhhhhHHHHHHHHHHHHHHHHh
Q 036858 85 SIIEGA----ILADQLEKISYDNQWVPSPDGGSICKTICK-LYTKGELEVTEEQFNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 85 ~vieg~----~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~-y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 153 (160)
+..... .....-.....+++|.+.+ ++|.|+++.. |...++.. .........+.-..++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhc
Confidence 764332 0000012346888898886 4699998875 33221100 001111234456678888888874
No 29
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.61 E-value=2.6e-06 Score=60.59 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=77.2
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
|++.++.|+|||++||+++. |... +++|.+... ..++-.+|.--.+....... ..+.-++.++++. +.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~~~-~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESDPP-RRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEecCC-CeEEE
Confidence 57889999999999999996 9998 899998621 12333444433343332111 1344456667644 44677
Q ss_pred EEEecCccc-cCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHH
Q 036858 85 SIIEGAILA-DQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYL 152 (160)
Q Consensus 85 ~vieg~~~~-~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 152 (160)
+...+.... ..-.....++.+.+.++ +|.++.+..-...+ +.......+....+++.|.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHh
Confidence 754332210 00123477788888754 67666554432211 1222223445677888888876
No 30
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=3.3e-06 Score=61.20 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=77.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccC-cceeeEEEEcCCCCCccEEEEEe-eCCCceeeeEEEEEEEecCCceeE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFP-DAIKNIDVVEGDGGAGSIKKITF-AEGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P-~~v~s~e~~eG~g~~Gsvr~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
++.+.+|+||+++||+++. |... +.+|++ ..+. +...+.+..+|..-.+.+ .+++..-...=++.++++.++ +.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~-l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPER-IV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EE
Confidence 5778999999999999996 9887 788864 3232 211223323343333333 223321223446777877665 78
Q ss_pred EEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHHHHh
Q 036858 84 YSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 84 y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yl~ 153 (160)
|+...++. . ...+++|.|.+ |+|.++.+..|..... -...+. ...+.-..++..|++||.
T Consensus 78 ~t~~~~~~----~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~---~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGPP----R--FRLTVTFEEQG-GKTRLTWRQVFPTAAE---RCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCCC----c--EEEEEEEEECC-CCEEEEEEEEcCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 87643311 1 36788888875 6798888765421100 001111 133446677888888874
No 31
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.54 E-value=1.5e-05 Score=57.90 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=78.8
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeeEEEEcCCCCCccEEEEEee-CCCceeeeEEEEEEEecCCceeE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPD-AIKNIDVVEGDGGAGSIKKITFA-EGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~-~v~s~e~~eG~g~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
++.+..++||+++||+++. |... +.+|+.. .--.+...+.+-.+|..-.+... .++......=++.++|+.++ +.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EE
Confidence 5677889999999999996 9887 7888853 11122323344333433333332 33332233446667777665 66
Q ss_pred EEEE--ecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHh
Q 036858 84 YSII--EGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 84 y~vi--eg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 153 (160)
|+-. .++.. . .....++.|.+.+ |+|.++.+..+-..++. +........-..++..|++||-
T Consensus 79 ~t~~~~~~~~~-~--~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGTL-L--SASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCcc-c--cceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 6642 22221 1 1235788888875 57888887665322211 1122233456677888888873
No 32
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.54 E-value=2.1e-05 Score=59.95 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=88.7
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCce---eeeEEEEEEEecCCc
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQV---NDVKHKIEEVDKVNL 80 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~---~~~kErl~~~D~~~~ 80 (160)
..+..+.+|++||+++|+++. |.+. .|+|.|. +.++++++..+.--.+-.+.+....++ ..+-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 567888999999999999996 9998 8999996 889999876642122222333222111 122211112222233
Q ss_pred eeEEEEEecCc--ccc-C---ceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 81 KTSYSIIEGAI--LAD-Q---LEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 81 ~~~y~vieg~~--~~~-~---~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
.+...+..++. +.. + ...+.+.+.++|.++++|.+++...+++.+. .|.-.++. .+.....++++|.+.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433322 111 1 3556778899999888899999998888753 44444443 4445667777777654
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.54 E-value=6.7e-06 Score=59.97 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=80.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEee-CCCceeeeEEEEEEEecCCceeEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFA-EGGQVNDVKHKIEEVDKVNLKTSY 84 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (160)
++.+.+++||+++||+++. |... +.+|+...--.+...+.|-.+|..-.+... .++....+.=++.++++.++ +.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~-l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPER-IVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence 6778999999999999996 9887 778876532223333444344444444443 23322233445666776654 555
Q ss_pred EEE-ecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHHHHh
Q 036858 85 SII-EGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 85 ~vi-eg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yl~ 153 (160)
+-- ++.. . .....++++.+.+ |+|.++.+..|.... ....... ...+.-...+..|++||.
T Consensus 79 t~~~~~~~--~--~~s~v~~~l~~~~-~gT~l~l~~~~~~~~---~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP--D--GVALETVTFTELG-GRTRLTATSRYPSKE---ARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC--C--CceEEEEEEEECC-CCEEEEEEEEeCCHH---HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 532 2221 1 1236788888875 579888876553211 0000111 234456778999999885
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.51 E-value=2.7e-05 Score=56.83 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=78.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeeEEEEcCCCCCccEEEE--EeeC------CCceeeeEEEEEEE
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPD-AIKNIDVVEGDGGAGSIKKI--TFAE------GGQVNDVKHKIEEV 75 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~-~v~s~e~~eG~g~~Gsvr~~--~~~~------g~~~~~~kErl~~~ 75 (160)
+++.+..|+||+++||+++. |... +.+|++. .+. +.+...+-.+|-.-.+ ++.. .+......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGMT-GTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCeE-eEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 46778999999999999996 9998 7888763 221 2222233223322222 2222 11112334467778
Q ss_pred ecCCceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHh
Q 036858 76 DKVNLKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 76 D~~~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 153 (160)
++.++ +.|+..-.+.... .....+++|.+.+ ++|.++++...-+.. .... ...+.-..++..|++||-
T Consensus 78 ~p~~~-i~~~~~~~~~~~~--~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~~~---~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNER-IVYTDVFDDPSLS--GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IPPE---DCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCE-EEEEEEecCCCCC--ceEEEEEEEEecC-CCEEEEEEEeCCCch---hhhh---HHHHHHHHHHHHHHHHhc
Confidence 87765 6777432221111 1236788888875 578888877532211 1111 234556778888888874
No 35
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.44 E-value=1.2e-05 Score=57.83 Aligned_cols=128 Identities=15% Similarity=0.212 Sum_probs=76.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceee--EEEEcCCCCCccEEEEEee--CCCceeeeEEEEEEEecCCc
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKN--IDVVEGDGGAGSIKKITFA--EGGQVNDVKHKIEEVDKVNL 80 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s--~e~~eG~g~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~ 80 (160)
|++.++.++||+++||+++. |... +.+|++. ... +...+.|-.+|..-.+... +|+..-...=++.++++.++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKL 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCE
Confidence 57889999999999999996 9887 8899643 111 1112234344444444332 22211123445666766655
Q ss_pred eeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHh
Q 036858 81 KTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 81 ~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 153 (160)
+.|+...+ ...++++.+.+ |+|.++.+ +...+. ...+. ..++-..++..|++||-
T Consensus 78 -l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~~~~---~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 -IEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENE--NPVEM---QRQGWQAILDNFKKYVE 132 (133)
T ss_pred -EEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCC--CcHHH---HHHHHHHHHHHHHHHhh
Confidence 78886321 25788888875 57887764 433211 11111 33456778888888874
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=5.9e-05 Score=55.04 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=75.8
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcc-eeeEEEEcCCCCCccEEEEEe-eCCCceeeeEEEEEEEecCCceeE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDA-IKNIDVVEGDGGAGSIKKITF-AEGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~-v~s~e~~eG~g~~Gsvr~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
+..+..|+||+++||+++. |... +.+|++.. . .+...+.|-.+|..-.+.+ .+++..-...=++.++|+.++ +.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPW-TTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCc-cceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EE
Confidence 5678999999999999996 9887 77887632 1 1111222322333333333 233332233456777887766 66
Q ss_pred EE--EEec-CccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-----HHHHHHHHHHHHHHHHh
Q 036858 84 YS--IIEG-AILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-----GKEKSAAMVKALEAYLL 153 (160)
Q Consensus 84 y~--vieg-~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-----~~~~~~~~~k~ie~yl~ 153 (160)
|+ +.++ +....+. ...+++|.+.+ ++|.++.+..+.. ++..+. ..+.-..++..|++||.
T Consensus 78 ~t~~~~~~~~~~~~~~--~~v~~~~~~~~-~gT~Ltl~~~~~~-------~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPF--MTAIITFEDEG-GGTRYTARARHWT-------EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCc--EEEEEEEEecC-CcEEEEEEEEeCC-------HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 66 3222 1111111 35688898875 5788887644321 111111 23456778888888874
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.31 E-value=5.6e-05 Score=55.33 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=73.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcce-------eeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecC
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAI-------KNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKV 78 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v-------~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~ 78 (160)
++.+++|+||+++||+++. | . +.+|++..- ..|++--..| |..+ +... ++. ....=++.++++.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~-~g~-~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGE-DGT-ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-EecC-CCc-EeceEEEEEEcCC
Confidence 6789999999999999996 7 3 567765321 2233211112 2332 2222 232 1223467778777
Q ss_pred CceeEEEEE-ecCcc-ccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhh-hhhHHHHHHHHHHHHHHHHh
Q 036858 79 NLKTSYSII-EGAIL-ADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQ-FNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 79 ~~~~~y~vi-eg~~~-~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~-~~~~~~~~~~~~k~ie~yl~ 153 (160)
++ +.|+-. ..+.. .... .-..+++|.+.++++|.++.+...-......-.+.. .......-..++..|++||-
T Consensus 73 ~~-l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 73 SR-LVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CE-EEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 66 667643 21111 0111 126888889876467988877766432210001111 11122345667888888773
No 38
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.22 E-value=1e-05 Score=59.58 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=83.5
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeE
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
.+++++.-+..||+++|+++. |... -|+.+|- -.+..+.+.++ ...+-.++.+-.+=-++..-|.. +++..+.|-
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 468889999999999999996 9999 8999996 55666777763 22444444432322245555654 566666777
Q ss_pred EEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 84 YSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 84 y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
-++++|+. +...++|+++|.++++|.|+..++|+..+
T Consensus 77 ~~l~~GPF-----k~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDGPF-----KYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcCCh-----hhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 78888864 55699999999877799999999999875
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=5e-05 Score=54.86 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=76.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.++.|+||+++||+++. |... +.+|++. -.+.++. +|....+.+...++ ...=++.++++..+ +.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~~~-l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPNKR-IVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCCCE-EEEE
Confidence 4688999999999999996 9887 7787543 2233332 33333455554332 22335666766544 7787
Q ss_pred EEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh---HHHHHHHHHHHHHHHHhhC
Q 036858 86 IIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA---GKEKSAAMVKALEAYLLAN 155 (160)
Q Consensus 86 vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~---~~~~~~~~~k~ie~yl~~~ 155 (160)
.-.++ +. -..+++|.+.++|+|.++.+...-+. ..++..+. ....-..++..|++||...
T Consensus 71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~----~~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPG----TDDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCC----CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 64322 12 26788999886567887766443221 11111111 1234567788888888653
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00022 Score=52.69 Aligned_cols=139 Identities=20% Similarity=0.208 Sum_probs=75.9
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeE
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTS 83 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (160)
.++..+..|++|+++||+++. |... +.+|+..--.+.++.-|. +....+....| +.....-++.++++..| |.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~r-Iv 80 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPER-IV 80 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCcE-EE
Confidence 678999999999999999996 9887 889886211111212121 22333443333 22345556666776665 56
Q ss_pred EEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh--HHHHHHHHHHHHHHHHh
Q 036858 84 YSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA--GKEKSAAMVKALEAYLL 153 (160)
Q Consensus 84 y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~--~~~~~~~~~k~ie~yl~ 153 (160)
|+-.-.+.... ...-..++++++..+|+ +++..........+....... ..+.-..++..++++|.
T Consensus 81 ~tw~~~~~~~~-~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 81 FTWDFDEDGEP-FLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEeccCCCCCc-ccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 66433322111 11237788888876654 233333333221111221111 14556778888887764
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.11 E-value=0.0002 Score=49.95 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=69.4
Q ss_pred cCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEEEecCcc
Q 036858 13 AVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSIIEGAIL 92 (160)
Q Consensus 13 ~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~~ 92 (160)
+||+++||+++. |... +.+|.+......+ ..+|..-.+. ..++......=++.++++.++ +.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~~-----~~~Gg~~~~~-~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAEMD-----FRPGGSFRFM-DPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEEEE-----CSTTEEEEEE-ETTSEEEEEEEEEEEEETTTE-EEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCcceee-----eecCCEEEEE-ecCCCCceeeEEEEEEeCCEE-EEEEEEccCCC
Confidence 699999999996 9887 7899432122222 2334333332 244432334434777877766 77875433322
Q ss_pred ccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 93 ADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
. -.....++.|.+ .+++|.++.+. ... +....... ....-..++..|.+||
T Consensus 72 ~--~~~~~v~~~~~~-~~~~T~l~~~~--~~~----~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 D--GPESRVTFEFEE-EGGGTRLTLTH--SGF----PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--CEEEEEEEEEEE-ETTEEEEEEEE--EEE----HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCceEEEEEEEE-cCCcEEEEEEE--EcC----CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123478888888 45678777665 221 12222222 3445667778888876
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.02 E-value=0.00038 Score=49.69 Aligned_cols=122 Identities=11% Similarity=0.150 Sum_probs=68.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYS 85 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (160)
++.+..|+||+++||+++. |... +.+|+.. ..+.+...| |..+ +..| .+.=++.++++..+ +.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p~~~-l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGG----NITGEFVELVPGKK-IVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCC----ceEEEEEEEcCCCE-EEEE
Confidence 6788999999999999996 8887 7888854 333433222 3333 2333 13335666775544 5665
Q ss_pred EEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHH-HHHHHHHHHH
Q 036858 86 IIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSA-AMVKALEAYL 152 (160)
Q Consensus 86 vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~-~~~k~ie~yl 152 (160)
---.+...... -..++++.+. +++|.++.+....+.. ......+.-. .++..|.++|
T Consensus 67 w~~~~~~~~~~--s~v~~~l~~~-~~gT~ltl~~~g~~~~-------~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSWPEGHY--STVTLTFTEK-DDETELKLTQTGVPAG-------EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCCCCCCc--EEEEEEEEEC-CCCEEEEEEEECCCCc-------hHHHHHhhHHHHHHHHHHHHh
Confidence 43222111112 3678888887 4578766655533221 1121223333 3667777665
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.72 E-value=0.00048 Score=49.80 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=63.7
Q ss_pred EcCCHHHHHHHhhhccCcccccc-cCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEEEecC
Q 036858 12 YAVPPARMFKALVLESDQLFPKI-FPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSIIEGA 90 (160)
Q Consensus 12 i~apa~~vw~~~~~d~~~l~pk~-~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~ 90 (160)
++||+++||+++- |.+. +.+| .+. ...++...| |..+. ..+. +.=++.++|+.++ +.|+---.+
T Consensus 1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~-~~~~d~~~G----G~f~~---~~~~----~~G~~~ev~pp~r-lv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYT-LTRLSLGS-PAEMDAKVG----GKFSL---FNGS----VEGEFTELEKPKK-IVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHc-CHHH-HHHHhcCC-CccccCCcC----CEEEE---ecCc----eEEEEEEEcCCCE-EEEEEecCC
Confidence 4799999999996 9887 7787 432 222222222 22332 2221 2235566776665 455432121
Q ss_pred ccccCceeEEEEEEEEecCCCCceEEEEEE-EEEcCCcc--CChhhhhhHHHHHHH-HHHHHHHHH
Q 036858 91 ILADQLEKISYDNQWVPSPDGGSICKTICK-LYTKGELE--VTEEQFNAGKEKSAA-MVKALEAYL 152 (160)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~-y~~~~~~~--~~~~~~~~~~~~~~~-~~k~ie~yl 152 (160)
.....++ ..++++.+.++|+|.++.+.. +....... ...+. ..+.-.. ++..|++||
T Consensus 66 ~~~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~---~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 66 WEEDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLER---CRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhH---HHhChHHHHHHHHHHHh
Confidence 1111122 678888887666788777766 32211100 11111 2234455 688888876
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.39 E-value=0.019 Score=44.83 Aligned_cols=123 Identities=10% Similarity=-0.038 Sum_probs=73.6
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEee-C--C--CceeeeEEEEEEEecC
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFA-E--G--GQVNDVKHKIEEVDKV 78 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~-~--g--~~~~~~kErl~~~D~~ 78 (160)
.+..+.+|++|+++||+++. |... .++|.+. ++++++++.-+ .. .+-.+.+. + . .+=..+.-+....+..
T Consensus 46 ~~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~~-~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~ 121 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVK-DPRT-RFLYDTM-IKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGE 121 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHh-Ccch-hhhhHHh-hhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCC
Confidence 34567899999999999995 9998 8999994 99999987543 22 33333322 1 1 1101222222222333
Q ss_pred CceeEEEEEec-Ccccc-----CceeEEEEEEEEec---CCCCceEEEEEEEEEcCCccCCh
Q 036858 79 NLKTSYSIIEG-AILAD-----QLEKISYDNQWVPS---PDGGSICKTICKLYTKGELEVTE 131 (160)
Q Consensus 79 ~~~~~y~vieg-~~~~~-----~~~~~~~~~~v~~~---~~g~s~v~w~~~y~~~~~~~~~~ 131 (160)
...+.-+-+.- ..+.. ....+.+-+.++|. ++|.|.++.....++.+++.|+-
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 32333332222 11111 13456788899998 66789999888888885554444
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.27 E-value=0.047 Score=43.53 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=84.4
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEeeC---CCceeeeEEEEEE--Eec
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFAE---GGQVNDVKHKIEE--VDK 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~---g~~~~~~kErl~~--~D~ 77 (160)
..+..+..+++|++++|+++. |... .++|.+. ..++++++.-+ ..+ +-.+.++. -.+=..+-.+-.. .+.
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCC
Confidence 457788899999999999996 9998 8999996 88999887432 223 23333332 1111122211111 222
Q ss_pred CC-ceeEEEEEe-cCc-ccc---CceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHH
Q 036858 78 VN-LKTSYSIIE-GAI-LAD---QLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAY 151 (160)
Q Consensus 78 ~~-~~~~y~vie-g~~-~~~---~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~y 151 (160)
.. ..+..+-+. ... +.. ....+.+-+.+.|.++|+|.|+.....+|.=-. --...+.-+-......|...+.|
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLS-YVTCNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccc-eeeecchhhhHHHHHHHHHHHHH
Confidence 22 222333232 111 111 145678899999998888988887776663210 11111111233466778888888
Q ss_pred HhhC
Q 036858 152 LLAN 155 (160)
Q Consensus 152 l~~~ 155 (160)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 8764
No 46
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.045 Score=40.04 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=75.5
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEee-CCCce-eeeEEEEEE--Eec
Q 036858 3 VITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFA-EGGQV-NDVKHKIEE--VDK 77 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~-~g~~~-~~~kErl~~--~D~ 77 (160)
++++....+|+||.|-||+-.+ ..++ +..+-|... |-.-+|+ -+.|+-....+. -|.++ -..+-|+++ +|+
T Consensus 1 m~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~ 76 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN 76 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCC
Confidence 4678889999999999999996 7777 667777633 3223453 244543333322 12111 245556665 666
Q ss_pred CCceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcC
Q 036858 78 VNLKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKG 125 (160)
Q Consensus 78 ~~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~ 125 (160)
-.+ ++-..+.|++... +.+-+-+|.+.+ |+|+..=.+.|+...
T Consensus 77 ~~~-FtDv~i~gPfp~~---~WrHtH~F~~eg-g~TvliD~Vsye~p~ 119 (153)
T COG4276 77 GSR-FTDVCITGPFPAL---NWRHTHNFVDEG-GGTVLIDSVSYELPA 119 (153)
T ss_pred cce-eeeeeecCCccce---eeEEEeeeecCC-CcEEEEeeEEeeccC
Confidence 655 6777888887642 578899998875 478999899999654
No 47
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.97 E-value=0.086 Score=40.95 Aligned_cols=146 Identities=11% Similarity=0.110 Sum_probs=83.4
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEee---CC-CceeeeE-EEEEEEec
Q 036858 3 VITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFA---EG-GQVNDVK-HKIEEVDK 77 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~---~g-~~~~~~k-Erl~~~D~ 77 (160)
...+..+..|++|++.+.+++. |.+. .|+|.|.. .+.+.++..+..-.+-.+.+. +- .....+. -.++.++
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~~-~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~- 120 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPFC-IRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE- 120 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEe-hhhh-Hhhhcccc-eeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-
Confidence 4567889999999999999995 9976 99999974 454555443211122222221 01 1101111 1122232
Q ss_pred CCceeEE--EEEecC----------ccccC-----ceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHH
Q 036858 78 VNLKTSY--SIIEGA----------ILADQ-----LEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKE 139 (160)
Q Consensus 78 ~~~~~~y--~vieg~----------~~~~~-----~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~ 139 (160)
++..+.. +-+..+ ++..+ ...+.+-+.++|.++|+|.+++.+..+|++.- .|.-.+. ..++
T Consensus 121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~ 199 (215)
T cd08877 121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARK 199 (215)
T ss_pred cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHH
Confidence 3333322 112110 11111 34567788899998888999988877776642 3344444 4666
Q ss_pred HHHHHHHHHHHHHh
Q 036858 140 KSAAMVKALEAYLL 153 (160)
Q Consensus 140 ~~~~~~k~ie~yl~ 153 (160)
.+..+++.|.+-+.
T Consensus 200 ~~~~~~~~l~k~~~ 213 (215)
T cd08877 200 FAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 77788888876553
No 48
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.83 E-value=0.12 Score=38.14 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=63.3
Q ss_pred EEEEEEEcCC-------HHHHHHHhhhccCccccc-ccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEec
Q 036858 6 FESNDTYAVP-------PARMFKALVLESDQLFPK-IFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDK 77 (160)
Q Consensus 6 ~~~e~~i~ap-------a~~vw~~~~~d~~~l~pk-~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~ 77 (160)
+++.+.||-| .+++|+-+-....+ |+ ..| .+.+|++++.++. ...|.++|++. .++|++. +++
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~--p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~ 72 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRARE--PQLFVP-GLDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEP 72 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCC--chhccc-ccceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecC
Confidence 3456666654 46999988544554 55 445 5999999987753 46799999875 7999986 555
Q ss_pred CCceeEEEEEe-cCccccCceeEEEEEEEEecCCCCceEEEEEEEEEc
Q 036858 78 VNLKTSYSIIE-GAILADQLEKISYDNQWVPSPDGGSICKTICKLYTK 124 (160)
Q Consensus 78 ~~~~~~y~vie-g~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~ 124 (160)
..+ +.|.+-. |. +.++.+....+| -.-.++.|+..
T Consensus 73 ~~~-v~f~~~~~g~---------~l~~~iee~~~g--~L~lrf~ye~~ 108 (141)
T cd08863 73 PSR-VHFLQADAGG---------TLTNTIEEPEDG--ALYLRFVYETT 108 (141)
T ss_pred CcE-EEEEecCCCC---------eEEEEeccCCCC--cEEEEEEEEec
Confidence 544 7888765 21 344455433343 24567777754
No 49
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.68 E-value=0.22 Score=39.81 Aligned_cols=144 Identities=14% Similarity=0.031 Sum_probs=78.1
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEeeCC-Cc--ee-eeEEEEEEEecCC
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFAEG-GQ--VN-DVKHKIEEVDKVN 79 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~g-~~--~~-~~kErl~~~D~~~ 79 (160)
.+..+..+++|++++++++. |... .++|.+. +.++++++--+ .- .+..++.++- ++ .. .+--+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 45677899999999999995 9999 8999996 88899876542 22 2555543322 11 11 1111111112222
Q ss_pred c---eeEEEEEe-cCccc-c---CceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHH-HHHHHHHHH
Q 036858 80 L---KTSYSIIE-GAILA-D---QLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEK-SAAMVKALE 149 (160)
Q Consensus 80 ~---~~~y~vie-g~~~~-~---~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~-~~~~~k~ie 149 (160)
. .+..+.+. .+.++ . ...++.+-+.+.|.++|.|.+.+...-+| +.. |.-..+ ...+. ....+.+-.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~L-P~~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GVL-PYISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--ccc-cHHHhhhhhhccchhHHHHHHH
Confidence 2 12222222 22211 1 13456678888998888888877553343 332 222222 22222 445566666
Q ss_pred HHHhhC
Q 036858 150 AYLLAN 155 (160)
Q Consensus 150 ~yl~~~ 155 (160)
.+|..|
T Consensus 235 ~~~~~~ 240 (240)
T cd08913 235 QFLLDN 240 (240)
T ss_pred HHhhcC
Confidence 666543
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.63 E-value=0.17 Score=37.44 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=78.7
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCce---e-eeEEEEEEEecCC
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQV---N-DVKHKIEEVDKVN 79 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~---~-~~kErl~~~D~~~ 79 (160)
..+..+.++++|++++|+++. |... .++|-|. +.++++++.....-.+....+....+. . .+..... .++++
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~-~~~~~ 114 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRR-KLDDG 114 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEE-EcCCC
Confidence 456788899999999999996 9887 8899986 888888876532223444444322211 1 1112222 23322
Q ss_pred c-eeEEEEEecC-cccc-Cc---eeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHH
Q 036858 80 L-KTSYSIIEGA-ILAD-QL---EKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEA 150 (160)
Q Consensus 80 ~-~~~y~vieg~-~~~~-~~---~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 150 (160)
. .+...-++.+ .+.. ++ ..+.+-+.++|.++++|.+++....++.+.. |.-..+ ...+....+.+.+..
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHH
Confidence 2 2222222221 1110 11 1224556788887788999999988887643 333333 234445555555544
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.61 E-value=0.23 Score=38.52 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=82.1
Q ss_pred cEEEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCC--CccEEEE-EeeC-CCceeeeEEEEEEEe-
Q 036858 3 VITFESNDTY-AVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGG--AGSIKKI-TFAE-GGQVNDVKHKIEEVD- 76 (160)
Q Consensus 3 ~~~~~~e~~i-~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~--~Gsvr~~-~~~~-g~~~~~~kErl~~~D- 76 (160)
...+..+.++ ++|++.+++++. |... .++|.+. +.+.++++-++. ...++.. .++- -.+=..+--|..-.|
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~ 125 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESD 125 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcC
Confidence 3456777788 679999999995 9887 8999996 667777766532 2222221 1111 111012222222233
Q ss_pred cCCceeEEEEEecCc-cc---cCceeEEEEEEEEec--CCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHH
Q 036858 77 KVNLKTSYSIIEGAI-LA---DQLEKISYDNQWVPS--PDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALE 149 (160)
Q Consensus 77 ~~~~~~~y~vieg~~-~~---~~~~~~~~~~~v~~~--~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie 149 (160)
+....+..+.+.-+. +. -.+..|.+.+.+.|. ++++|.+.++..-++.+. .|.-..+ .+....-.+++.|.
T Consensus 126 ~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 126 DRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred CCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHH
Confidence 333322222222211 11 126678888999998 556777777666555433 4444444 35555667788887
Q ss_pred HHHh
Q 036858 150 AYLL 153 (160)
Q Consensus 150 ~yl~ 153 (160)
..+.
T Consensus 204 ~a~~ 207 (209)
T cd08870 204 NALR 207 (209)
T ss_pred HHHh
Confidence 7664
No 52
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.29 E-value=0.11 Score=40.38 Aligned_cols=144 Identities=10% Similarity=0.095 Sum_probs=80.9
Q ss_pred EEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEeeC-CCce---eeeEEEEEEEecC
Q 036858 5 TFESNDTYAVPPARMF-KALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFAE-GGQV---NDVKHKIEEVDKV 78 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw-~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~-g~~~---~~~kErl~~~D~~ 78 (160)
-+..+.++++|+++++ .++ .|... .++|.+. +.++++++--+ ..--++.+..+. ++.+ ..+.-+...-+..
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~-~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELV-DRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred EEEEEEEecCCHHHHHHHHH-hchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 3567889999999999 666 48888 8999996 77877765532 111133322221 1111 1222222222223
Q ss_pred CceeEEEEEecCccc--c---CceeEEEEEEEEecCC--CCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHH
Q 036858 79 NLKTSYSIIEGAILA--D---QLEKISYDNQWVPSPD--GGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEA 150 (160)
Q Consensus 79 ~~~~~y~vieg~~~~--~---~~~~~~~~~~v~~~~~--g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~ 150 (160)
+..+.....+-+..+ . ....+.+-+.+.|.++ +.|.++|.+-.++++. .|.-..+. +.+.....++.|.+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHH
Confidence 322111111111110 0 1344567788899865 7899999999998875 33444442 34556677777776
Q ss_pred HHh
Q 036858 151 YLL 153 (160)
Q Consensus 151 yl~ 153 (160)
++.
T Consensus 205 ~~~ 207 (209)
T cd08905 205 RMA 207 (209)
T ss_pred HHh
Confidence 664
No 53
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.23 E-value=0.41 Score=37.28 Aligned_cols=144 Identities=10% Similarity=0.038 Sum_probs=76.5
Q ss_pred EEEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEeeC-CCce---eeeEEEEEEEec
Q 036858 4 ITFESNDTYAVPPARMF-KALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFAE-GGQV---NDVKHKIEEVDK 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw-~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~-g~~~---~~~kErl~~~D~ 77 (160)
..+..+.++++|++++| +++. |... .++|.+. +.++++++--+ ..--++.++.+. ++++ ..+--|--.-+.
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 34677899999999998 5785 9999 8999996 88888875542 111122333322 1221 122222221222
Q ss_pred CC-ceeEEEEEecCccc-cCce---eEEEEEEEEe--cCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHH
Q 036858 78 VN-LKTSYSIIEGAILA-DQLE---KISYDNQWVP--SPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALE 149 (160)
Q Consensus 78 ~~-~~~~y~vieg~~~~-~~~~---~~~~~~~v~~--~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie 149 (160)
.. -.+..++.-...+. .+|- +...-+-+.| .++++|.++|....++++. .|.-..+ .+.+.....++.|.
T Consensus 126 ~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 126 DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 22 12222222111111 1111 1112233444 4456899999999998874 3333333 34445566677666
Q ss_pred HHH
Q 036858 150 AYL 152 (160)
Q Consensus 150 ~yl 152 (160)
+++
T Consensus 204 ~~~ 206 (209)
T cd08906 204 QRI 206 (209)
T ss_pred HHH
Confidence 665
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.19 E-value=0.42 Score=37.09 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=75.7
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCc-ccccccCcceeeEEEEcCCC-CCccEEEEEee-C-CC---ceeee-EEEEEEEec
Q 036858 6 FESNDTYAVPPARMFKALVLESDQ-LFPKIFPDAIKNIDVVEGDG-GAGSIKKITFA-E-GG---QVNDV-KHKIEEVDK 77 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~-l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~-~-g~---~~~~~-kErl~~~D~ 77 (160)
+..+..++++++++++.+. |..+ .-++|-+. +.++++++.-+ ...-++. ..+ + ++ +=..+ .......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 6688999999999999995 7754 12799986 77888876642 2222222 222 1 11 10111 122222333
Q ss_pred CCceeEEEEEecCcc--ccCce---e--EEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHH
Q 036858 78 VNLKTSYSIIEGAIL--ADQLE---K--ISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALE 149 (160)
Q Consensus 78 ~~~~~~y~vieg~~~--~~~~~---~--~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 149 (160)
..-.+.+..++-+.. ..+|- . ....++..|.++++|.++|.+..++++. .|.-..+. ..+....+++.|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~--iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY--LPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC--cCHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333211 11111 1 1223333343456899999988888764 33444442 3345567777777
Q ss_pred HHHh
Q 036858 150 AYLL 153 (160)
Q Consensus 150 ~yl~ 153 (160)
+++.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 7663
No 55
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.82 E-value=0.62 Score=35.91 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=78.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEeeCC-Cce---eeeEEEEEEEecCCc
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFAEG-GQV---NDVKHKIEEVDKVNL 80 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g-~~~---~~~kErl~~~D~~~~ 80 (160)
+..+..+++||++++..+..|.+. .++|.+. +..+++++.- +..--+........ .++ ..+--|....++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 566889999999998644248888 8999997 6677776553 22111222222221 111 111112111223222
Q ss_pred eeEEEEEecC-cc-ccC---ceeEEEEEEEEecCC--CCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHHHH
Q 036858 81 KTSYSIIEGA-IL-ADQ---LEKISYDNQWVPSPD--GGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEAYL 152 (160)
Q Consensus 81 ~~~y~vieg~-~~-~~~---~~~~~~~~~v~~~~~--g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yl 152 (160)
.+...-++=+ .+ ..+ ...+.+.+.+.|.++ ++|.++|....++++..+ .-..+ .+......+++.|..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP--~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLP--QYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCc--ceeeehhhHHHHHHHHHHHHHHH
Confidence 2222222211 11 011 233557778888764 579999988888886532 22222 24455667788888776
Q ss_pred h
Q 036858 153 L 153 (160)
Q Consensus 153 ~ 153 (160)
.
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 5
No 56
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=95.80 E-value=0.53 Score=34.95 Aligned_cols=98 Identities=19% Similarity=0.323 Sum_probs=52.9
Q ss_pred EEEEEEEcCCHH--------HHHHHhhhccCccccc-ccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEe
Q 036858 6 FESNDTYAVPPA--------RMFKALVLESDQLFPK-IFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVD 76 (160)
Q Consensus 6 ~~~e~~i~apa~--------~vw~~~~~d~~~l~pk-~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D 76 (160)
+++.+.||-|.+ +||+-+.....+ |. +.| .+.+|++++.+ +..-.|.++| |+ ..++|++. +.
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~--p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~f--g~--~~v~E~v~-~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN--PQLFVP-GIDSCEVLSES-DTVLTREVTF--GG--ATVRERVT-LY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH---GGGT-T-T--EEEEEEE--SSEEEEEEEE--TT--EEEEEEEE-EE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC--hhhCcc-ccCeEEEEecC-CCeEEEEEEE--CC--cEEEEEEE-Ee
Confidence 566777776654 799998533444 44 566 59999999776 3467899999 33 38999986 45
Q ss_pred cCCceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEc
Q 036858 77 KVNLKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTK 124 (160)
Q Consensus 77 ~~~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~ 124 (160)
+.. .+.| .... .=+.++.+...++ + ..-.++.|+..
T Consensus 73 ~~~-~V~f----~~~~-----Gs~lt~~I~e~~~-g-~L~ltf~ye~~ 108 (149)
T PF08982_consen 73 PPE-RVDF----AQHD-----GSSLTNIISEPEP-G-DLFLTFTYEWR 108 (149)
T ss_dssp TTT-EEEE----SSSB-----EEEEEEEEEEEET-T-EEEEEEEEEEE
T ss_pred CCc-EEEE----EcCC-----CCEEEEEEecCCC-C-cEEEEEEEEec
Confidence 544 4667 2221 1144444443223 3 55567777643
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.75 E-value=0.7 Score=35.98 Aligned_cols=145 Identities=10% Similarity=-0.000 Sum_probs=76.3
Q ss_pred EEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCC--Cce-eeeEEEEEEEecCCc
Q 036858 5 TFESNDTY-AVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEG--GQV-NDVKHKIEEVDKVNL 80 (160)
Q Consensus 5 ~~~~e~~i-~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g--~~~-~~~kErl~~~D~~~~ 80 (160)
.+..+.++ ++|++.+++++. |... .++|.|. +..+++++.-+.--.|..+.+..- ... ..+--|.. .+.++.
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~ 123 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGE 123 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCE
Confidence 35556666 699999999995 9877 8899997 656666654321122333333211 111 12222222 222222
Q ss_pred -eeEEEEEecC-ccc-cC---ceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHHHHh
Q 036858 81 -KTSYSIIEGA-ILA-DQ---LEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 81 -~~~y~vieg~-~~~-~~---~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yl~ 153 (160)
.+..+-+.-+ .+. .+ ...+.+-+.+.|.++++|.++|....++.+. .|.-..+ .+......+++.|.+.+.
T Consensus 124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111111111 110 11 1234566778888777899999887777764 3343333 234445566666666554
Q ss_pred hC
Q 036858 154 AN 155 (160)
Q Consensus 154 ~~ 155 (160)
+-
T Consensus 202 ~y 203 (222)
T cd08871 202 KY 203 (222)
T ss_pred HH
Confidence 43
No 58
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.73 E-value=0.7 Score=35.81 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=81.6
Q ss_pred EEEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCcc-EEEEEeeCCCce---eeeEEEEEEEecC
Q 036858 4 ITFESNDTY-AVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGS-IKKITFAEGGQV---NDVKHKIEEVDKV 78 (160)
Q Consensus 4 ~~~~~e~~i-~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gs-vr~~~~~~g~~~---~~~kErl~~~D~~ 78 (160)
..+..+.++ ++|++.+.+++. |... .++|.+. +.+.++++.+...++ +-.+.+..--++ ..+-.|-...|++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 345666666 999999999995 9987 8999986 777888876432222 222222111111 2344444445655
Q ss_pred Ccee--EEEEEec-Cccc----cCceeEEEEEEEEecC---CCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHH
Q 036858 79 NLKT--SYSIIEG-AILA----DQLEKISYDNQWVPSP---DGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKA 147 (160)
Q Consensus 79 ~~~~--~y~vieg-~~~~----~~~~~~~~~~~v~~~~---~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ 147 (160)
+..+ ...-++- ..+. -...+|.+.+.+.|.+ +++|.+.++..-++.+ ..|.-..+ .+....-.+++.
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~IP~~lvN~~~~~~~~~~l~~ 199 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NIPSYITSWVAMSGMPDFLER 199 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--ccCHHHHHHHHHhhccHHHHH
Confidence 5432 1111221 1110 1256788899999874 4577776543333332 33444443 355566777777
Q ss_pred HHHHHh
Q 036858 148 LEAYLL 153 (160)
Q Consensus 148 ie~yl~ 153 (160)
|...++
T Consensus 200 l~~a~~ 205 (207)
T cd08911 200 LRNAAL 205 (207)
T ss_pred HHHHHh
Confidence 777654
No 59
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.10 E-value=1.4 Score=35.28 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=66.3
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEEEeeC--CCcee-eeEEEEEEEec-C
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKITFAE--GGQVN-DVKHKIEEVDK-V 78 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~--g~~~~-~~kErl~~~D~-~ 78 (160)
..+..+.++++|++++++++. |... .++|.+. +.++++++.-+ .-- |..+.-++ ..+.. .+..+-..... .
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence 567788899999999999996 9999 8999996 77888876542 222 66655332 11111 11111111112 2
Q ss_pred Ccee--EEEEEec-Cccc-cC---cee-EEEEEEEEecCCCCceEEEEEEEEE
Q 036858 79 NLKT--SYSIIEG-AILA-DQ---LEK-ISYDNQWVPSPDGGSICKTICKLYT 123 (160)
Q Consensus 79 ~~~~--~y~vieg-~~~~-~~---~~~-~~~~~~v~~~~~g~s~v~w~~~y~~ 123 (160)
+..+ .-+-+.- .+++ .+ ... ..+- .+.|.++++|.|+....-+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2212 2221211 1111 11 233 3333 78898888898888877777
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.35 E-value=1.7 Score=32.93 Aligned_cols=146 Identities=14% Similarity=-0.001 Sum_probs=82.8
Q ss_pred EEEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCC-Cce---eee-EEEEEEEec
Q 036858 4 ITFESNDTYAVPPARMF-KALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEG-GQV---NDV-KHKIEEVDK 77 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw-~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g-~~~---~~~-kErl~~~D~ 77 (160)
..+..+..+.++++++. +++ .|... .++|.+. +.++++++-...-..|..+....- ++. ..+ .-+.....+
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~-~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELM-DDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHH-hcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 45677889999999844 566 49887 8999996 777777655321124444433211 121 111 112222222
Q ss_pred CCceeEEEEEecCccc--c---CceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHHHH
Q 036858 78 VNLKTSYSIIEGAILA--D---QLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALEAY 151 (160)
Q Consensus 78 ~~~~~~y~vieg~~~~--~---~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~y 151 (160)
....+..+-++.+-.+ . ....+.+-+.+.|.+++.|.++|....++.+.. |.-.++ .+......+++.+-++
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHH
Confidence 3333333223222110 1 123567778889988878999998888887753 333333 3455566677777666
Q ss_pred Hhh
Q 036858 152 LLA 154 (160)
Q Consensus 152 l~~ 154 (160)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 654
No 61
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.75 E-value=2.4 Score=32.52 Aligned_cols=143 Identities=9% Similarity=0.029 Sum_probs=76.4
Q ss_pred EEEEEEEEcCCHHHHHHHhhhc--cCcccccccCcceeeEEEEcCCCCCccEEEEEeeC--CC--cee-ee-EEEEEEEe
Q 036858 5 TFESNDTYAVPPARMFKALVLE--SDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAE--GG--QVN-DV-KHKIEEVD 76 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d--~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~--g~--~~~-~~-kErl~~~D 76 (160)
.+..+.+|+++++++++.+. | ... .++|.+. +.++++++.-+..=.+....++. .+ ... .+ .+....++
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 36788999999999999995 7 565 6899986 88888887643111122222211 11 101 11 12112233
Q ss_pred cCCceeEEEEEecCcc--ccCc---eeEEEEEEEEecC--CCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHH
Q 036858 77 KVNLKTSYSIIEGAIL--ADQL---EKISYDNQWVPSP--DGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKAL 148 (160)
Q Consensus 77 ~~~~~~~y~vieg~~~--~~~~---~~~~~~~~v~~~~--~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~i 148 (160)
+....+...-++=+.. ..+| ..+.+-+-+.|.+ +++|.++|.+..++++.. |.-..+ .+.+....+++.|
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHHHHH
Confidence 3222222222321211 0111 1233444566654 357999999999988753 344443 2444456667777
Q ss_pred HHHH
Q 036858 149 EAYL 152 (160)
Q Consensus 149 e~yl 152 (160)
-.|+
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 6664
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=92.94 E-value=2.9 Score=30.97 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=60.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccC---c---ceeeEEEEcCCCCCccEEEEE-eeC-CCc--e------eeeE
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFP---D---AIKNIDVVEGDGGAGSIKKIT-FAE-GGQ--V------NDVK 69 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P---~---~v~s~e~~eG~g~~Gsvr~~~-~~~-g~~--~------~~~k 69 (160)
++.++++++|+|+||+++. |-.- +...+- . .+.+++ ..|+| -+++.-. ++. ..| + ...-
T Consensus 1 f~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 3678999999999999996 6532 222221 1 133333 23333 1122211 221 111 0 1111
Q ss_pred EEEEEE---ecCCceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEc
Q 036858 70 HKIEEV---DKVNLKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTK 124 (160)
Q Consensus 70 Erl~~~---D~~~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~ 124 (160)
++.+.. ++..++.+|++--...+ . +.++++.+.|.+ ++|.+.+..+...+
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~P---~-~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGAP---V-SISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCce---E-EEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 233334 66777777775332222 2 479999999954 57999999998853
No 63
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.71 E-value=3.8 Score=31.75 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=77.2
Q ss_pred EEEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCC---Cceeee-EEEEEEEecC
Q 036858 4 ITFESNDTYA-VPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEG---GQVNDV-KHKIEEVDKV 78 (160)
Q Consensus 4 ~~~~~e~~i~-apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g---~~~~~~-kErl~~~D~~ 78 (160)
..+..+.++. ++++.+++++. |... .++|.+... ++.-.+.++. .|-.+.+..- .+=..+ .-+...+|.+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~ 123 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVE 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCC
Confidence 4566778888 79999999995 9998 899999744 4321222221 2223332211 110122 1122234444
Q ss_pred CceeEE---EEEecC-ccc----cCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhh-hHHHHHHHHHHHHH
Q 036858 79 NLKTSY---SIIEGA-ILA----DQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFN-AGKEKSAAMVKALE 149 (160)
Q Consensus 79 ~~~~~y---~vieg~-~~~----~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie 149 (160)
...+.. +.++=+ .+. -....|.+.+.++|.++++|.+.+...-++.+. .|.-..+ .+.+..-.+++.|.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHH
Confidence 432111 111111 000 025678899999988777888777666666443 3343333 35556667777777
Q ss_pred HHHh
Q 036858 150 AYLL 153 (160)
Q Consensus 150 ~yl~ 153 (160)
..+.
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 6553
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=92.31 E-value=4.7 Score=31.97 Aligned_cols=142 Identities=8% Similarity=0.064 Sum_probs=78.8
Q ss_pred EEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCC------ceeeeEEEEEEEec
Q 036858 5 TFESNDTYA-VPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGG------QVNDVKHKIEEVDK 77 (160)
Q Consensus 5 ~~~~e~~i~-apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~------~~~~~kErl~~~D~ 77 (160)
.+..+.+++ ++++.+.+++. |... .++|... +.+.++++-... ++ +.+...... ..-...-++...++
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~~-~~~~~vie~l~~-~~-~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d 127 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWETT-LENFHVVETLSQ-DT-LIFHQTHKRVWPAAQRDALFVSHIRKIPA 127 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHhh-hheeEEEEecCC-CC-EEEEEEccCCCCCCCcEEEEEEEEEecCc
Confidence 467777888 99999999996 9998 8999985 888887755421 11 222221111 11111222222333
Q ss_pred CC--------ceeEEEEEecCccccCceeEEEEE-----------------EEEecCCCCceEEEEEEEEEcCCccCChh
Q 036858 78 VN--------LKTSYSIIEGAILADQLEKISYDN-----------------QWVPSPDGGSICKTICKLYTKGELEVTEE 132 (160)
Q Consensus 78 ~~--------~~~~y~vieg~~~~~~~~~~~~~~-----------------~v~~~~~g~s~v~w~~~y~~~~~~~~~~~ 132 (160)
.. -.+..++.-...+.. -...++.. .++| ++++|.+++....+|.+. .|.-
T Consensus 128 ~~~~~~~~~~vii~~Sv~h~~~P~~-~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~--iP~w 203 (235)
T cd08872 128 LEEPNAHDTWIVCNFSVDHDSAPLN-NKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW--APAS 203 (235)
T ss_pred cccccCCCeEEEEEecccCccCCCC-CCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC--ccHH
Confidence 21 122333322222211 12223332 2333 345788888777777664 3344
Q ss_pred hhh-hHHHHHHHHHHHHHHHHhhC
Q 036858 133 QFN-AGKEKSAAMVKALEAYLLAN 155 (160)
Q Consensus 133 ~~~-~~~~~~~~~~k~ie~yl~~~ 155 (160)
.+. .++..+-++++.+.+|+.++
T Consensus 204 vvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 204 VLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Confidence 344 46677889999999999875
No 65
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=90.73 E-value=6.2 Score=30.23 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=67.5
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeC--CCce-eeeEEEEEEEecCCc-
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAE--GGQV-NDVKHKIEEVDKVNL- 80 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~--g~~~-~~~kErl~~~D~~~~- 80 (160)
-+..+.+|++++++|++.+. |. -++|.+. +.++++++--+.-=.|-...+.. ..+. ..+--|....+.++.
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~-d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRIL-RE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHH-HH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 35788999999999999885 64 3799997 77778775542111122222211 1111 222232323333332
Q ss_pred -eeEEEEEec--Ccccc--CceeEEEEEEEEecCCCCceEEEEEEEEEcCCcc
Q 036858 81 -KTSYSIIEG--AILAD--QLEKISYDNQWVPSPDGGSICKTICKLYTKGELE 128 (160)
Q Consensus 81 -~~~y~vieg--~~~~~--~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~ 128 (160)
.+..+-++- ..+.. ....+.+-+.++|.++|+|.+++.+..++.+..+
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 223322321 11111 0234567788899887889999999999987543
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=86.74 E-value=4.7 Score=31.73 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=65.1
Q ss_pred EEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEE--eeCCCceeeeEEEEEEEecCCceeEEEE
Q 036858 10 DTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKIT--FAEGGQVNDVKHKIEEVDKVNLKTSYSI 86 (160)
Q Consensus 10 ~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~--~~~g~~~~~~kErl~~~D~~~~~~~y~v 86 (160)
.-|..|++.+|++++ |..+ ..+..|= -++.++.+.+ ++ +.+-.+. |++= .+...-+++ .++..++.+ ..
T Consensus 74 rligysp~~my~vVS-~V~~-Y~~FVPw-C~kS~V~~~~P~~-~~kA~LeVGFk~l--~E~y~S~Vt-~~~p~l~kt-~~ 145 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSE-YHEFVPW-CKKSDVTSRRPSG-PLKADLEVGFKPL--DERYTSNVT-CVKPHLTKT-VC 145 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHH-hhccccc-eeccceeecCCCC-CceeeEEecCccc--chhheeeeE-EecccceEE-ee
Confidence 347889999999997 7776 5666763 4455555443 21 2333333 2211 134444443 555555422 23
Q ss_pred EecCccccCceeEEEEEEEEecC--CCCceEEEEEEEEEcC
Q 036858 87 IEGAILADQLEKISYDNQWVPSP--DGGSICKTICKLYTKG 125 (160)
Q Consensus 87 ieg~~~~~~~~~~~~~~~v~~~~--~g~s~v~w~~~y~~~~ 125 (160)
-+|.+ +......|++.|.+ .|.|.+...+.|+-+.
T Consensus 146 ~d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 146 ADGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 45544 45668999999998 4789999999999764
No 67
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=79.73 E-value=23 Score=26.50 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=87.5
Q ss_pred cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCC--cee---ee-EEEEEEEe
Q 036858 3 VITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGG--QVN---DV-KHKIEEVD 76 (160)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~--~~~---~~-kErl~~~D 76 (160)
...+..+..++++++++...+. +-.. +|-+. +.++++++--..-..|..+.+.... +.. .+ ..+.....
T Consensus 45 ~~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~ 119 (206)
T PF01852_consen 45 IKMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDE 119 (206)
T ss_dssp CEEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECT
T ss_pred ceEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEec
Confidence 3556788999999998888885 4332 88886 7788887663222455555444322 321 11 11222223
Q ss_pred cCCceeEEEEEecC-ccc--c---CceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHH
Q 036858 77 KVNLKTSYSIIEGA-ILA--D---QLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALE 149 (160)
Q Consensus 77 ~~~~~~~y~vieg~-~~~--~---~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 149 (160)
+....+..+=++.+ .+. . ....+.+.+.+.|.++|.|.|.+...-++.+.. |.-..+. .......+++.+-
T Consensus 120 ~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~ 197 (206)
T PF01852_consen 120 DGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLR 197 (206)
T ss_dssp TSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHH
Confidence 33344444433333 221 1 123456777889998877998888877777643 3444443 4555678888888
Q ss_pred HHHhhCCC
Q 036858 150 AYLLANPD 157 (160)
Q Consensus 150 ~yl~~~~~ 157 (160)
+.|.+++.
T Consensus 198 ~~~~~~~~ 205 (206)
T PF01852_consen 198 KALKKQKK 205 (206)
T ss_dssp HHHHHCCT
T ss_pred HHHHHhcc
Confidence 88877753
No 68
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=75.61 E-value=36 Score=26.45 Aligned_cols=140 Identities=9% Similarity=0.039 Sum_probs=73.2
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcC-CCCCccEEEEEeeC--CC---ceeeeEEEE-EEEec
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEG-DGGAGSIKKITFAE--GG---QVNDVKHKI-EEVDK 77 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG-~g~~Gsvr~~~~~~--g~---~~~~~kErl-~~~D~ 77 (160)
-...+..|+++++++|+.+. |... ..+|-+. +.+++++|- |... .|-.....+ ++ +-..+--|- ..++.
T Consensus 47 l~k~egvi~~~~e~v~~~l~-~~e~-r~~Wd~~-~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~ 122 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMY-QPEH-RIKWDKS-LQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEG 122 (204)
T ss_pred EEEEEEEecCCHHHHHHHHh-ccch-hhhhccc-ccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCC
Confidence 34678899999999999996 8666 7899995 888888764 2111 122212221 11 101111111 11234
Q ss_pred CCceeEEEEEecCcc--ccC---ceeEEEEEEEEecCC--CCceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHH
Q 036858 78 VNLKTSYSIIEGAIL--ADQ---LEKISYDNQWVPSPD--GGSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALE 149 (160)
Q Consensus 78 ~~~~~~y~vieg~~~--~~~---~~~~~~~~~v~~~~~--g~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 149 (160)
....+....++=+-. ..+ -.++.+=+-+.|.++ ++|.+.|-+..++++. .|....+. +......++..+.
T Consensus 123 ~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~--lP~~vv~~~~~~~~~~f~~~~~ 200 (204)
T cd08904 123 NMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN--LSRSVIEKTMPTNLVNLILDAK 200 (204)
T ss_pred CEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC--CCHHHHHHHhHHHHHHHHHHHH
Confidence 333333333322211 011 123344556678765 3799999999888864 33444442 2233445555544
Q ss_pred H
Q 036858 150 A 150 (160)
Q Consensus 150 ~ 150 (160)
.
T Consensus 201 ~ 201 (204)
T cd08904 201 D 201 (204)
T ss_pred H
Confidence 3
No 69
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=75.44 E-value=29 Score=25.39 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=31.0
Q ss_pred EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC
Q 036858 5 TFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD 48 (160)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~ 48 (160)
+++.++..+-+.+.+-.+++ |..-++|+++|. +++++ ++++
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STT
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCC
Confidence 46788889999999999997 999899999995 88888 4443
No 70
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=74.28 E-value=39 Score=26.28 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=66.4
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCC-CCccEEEE-EeeCCCce-eeeEEEEEEEecCCc
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDG-GAGSIKKI-TFAEGGQV-NDVKHKIEEVDKVNL 80 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g-~~Gsvr~~-~~~~g~~~-~~~kErl~~~D~~~~ 80 (160)
..+..+++|++++++|...+- |. .++|.+. +.+..+++--+ ..--+... +.+-..+. ..+.-|.-..|..+.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 457789999999999999995 65 3789986 55556654432 11111111 11111111 223333333333433
Q ss_pred eeEEEEE--ecC-cccc--CceeEEEEEEEEecCCCCceEEEEEEEEEcCCc
Q 036858 81 KTSYSII--EGA-ILAD--QLEKISYDNQWVPSPDGGSICKTICKLYTKGEL 127 (160)
Q Consensus 81 ~~~y~vi--eg~-~~~~--~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~ 127 (160)
.+.-... +-+ ++.. ....+.+.+.++|.++|+|.++..+..++.+..
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 3322221 111 1111 133456778889998889999998888887753
No 71
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=47.78 E-value=36 Score=27.56 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 036858 137 GKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 137 ~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
..+....+.+.+|+.+.++|+.|
T Consensus 259 ~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 259 CYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCchhh
Confidence 45567899999999999999976
No 72
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=46.06 E-value=40 Score=25.95 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=42.6
Q ss_pred EcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEEEecCc
Q 036858 12 YAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSIIEGAI 91 (160)
Q Consensus 12 i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~ 91 (160)
++.+..|+|+ |-++ .+..-|..| .+++.. +|.. ....+++..+..=+..=+-|-.+|+....|.|+|-|-++
T Consensus 3 ~~i~v~K~W~----d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD----DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC----CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 4555666775 3333 345566545 466663 3322 345566655543222234567778788899999998776
Q ss_pred c
Q 036858 92 L 92 (160)
Q Consensus 92 ~ 92 (160)
.
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 5
No 73
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.57 E-value=43 Score=27.31 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=27.0
Q ss_pred EEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 117 TICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 117 w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
+.+.+++.-+.+..++.-....+.+..+.+.+|+.+.++|+.|
T Consensus 258 y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 258 FRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred EEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 6677764322111111111245678899999999999999975
No 74
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=39.66 E-value=51 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=26.3
Q ss_pred EEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 117 TICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 117 w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
|.+.+++..+.++ ++. ..+..+.+.+.+|+++.++|+.|
T Consensus 249 ~~i~~~~~~~~~~-~~~---~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATEL-SVD---PEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCC-CCC---HHHHHHHHHHHHHHHHHcCchHH
Confidence 6666654322222 222 34578899999999999999865
No 75
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.69 E-value=57 Score=26.32 Aligned_cols=40 Identities=25% Similarity=0.146 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 116 KTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 116 ~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
.+++.+++..... +++. ..+.+..+.+.+|+++.++|+.|
T Consensus 238 ~y~i~~~~~~~~~-~~~~---~~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTD---VEVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCC-CCCC---HHHHHHHHHHHHHHHHHcCcHHh
Confidence 4666776432211 1111 34578899999999999999865
No 76
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.59 E-value=1.7e+02 Score=24.29 Aligned_cols=93 Identities=10% Similarity=0.166 Sum_probs=52.2
Q ss_pred EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCC-CCCccEEEEEeeCCCceeeeEEEEEEEecCCc-e
Q 036858 4 ITFESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGD-GGAGSIKKITFAEGGQVNDVKHKIEEVDKVNL-K 81 (160)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~-~ 81 (160)
..++.+-+++++++.+|++|- |... +..|.-+ -+. .+.+ | |.. .+-+|. ... ++..+.+.++ .
T Consensus 173 ~di~l~~tfn~~~~eLy~~fl-d~~r-v~~wt~S-~a~---l~~~~~--g~f---~lf~Gn---Vtg-~~~~~e~~K~Iv 237 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIFL-DPER-VKAWTRS-PAE---LEADPG--GKF---SLFDGN---VTG-EFLELEKNKKIV 237 (301)
T ss_pred ccceehhhcCCCHHHHHHHHh-cHHH-HHHhcCC-hhh---cccCCC--Cce---EEeccc---cee-eeeeecCCCeEE
Confidence 456778899999999999994 8776 6566632 222 2343 3 333 333442 222 3333444333 4
Q ss_pred eEEEEEecCccccCceeEEEEEEEEecCC-CCceEEE
Q 036858 82 TSYSIIEGAILADQLEKISYDNQWVPSPD-GGSICKT 117 (160)
Q Consensus 82 ~~y~vieg~~~~~~~~~~~~~~~v~~~~~-g~s~v~w 117 (160)
+.|++ +.-+. .+-+||+++.... |.|.+..
T Consensus 238 ~kWrl--~~Wp~----~~~atI~~~f~~~~~~t~l~~ 268 (301)
T KOG2936|consen 238 MKWRL--KSWPD----GHDATITLTFYESQGETKLQV 268 (301)
T ss_pred EEEec--ccCCC----CccceEEEEEecCCCceEEEE
Confidence 55666 33331 2467777776643 4565444
No 77
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=34.01 E-value=82 Score=25.39 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 036858 137 GKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 137 ~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
..+..+.+.+.||+++.++|+-|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 45678899999999999999865
No 78
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.35 E-value=80 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q 036858 138 KEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 138 ~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
.+.+..+.+.+|+++.++|+-|
T Consensus 257 ~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 257 LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHHcCcHHh
Confidence 4568899999999999999865
No 79
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.29 E-value=81 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=26.3
Q ss_pred EEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 116 KTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 116 ~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
.+.+.+++..+..+ .+ ...+....+.+.+|+++.++|+.|
T Consensus 251 ~~~i~~~~~~~~~~-~~---d~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPP-LD---DAEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCC-CC---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 36666765432222 11 134567888999999999999865
No 80
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.85 E-value=86 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 116 KTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 116 ~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
.|.+.+++..... +++. ..+....+.+.+|+++.++|+.|
T Consensus 248 ~y~i~i~~~~~~~-~~~~---i~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADF-PSDD---VIADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCC-CCCC---HHHHHHHHHHHHHHHHHcCcHhh
Confidence 3666665432211 2222 44578999999999999999865
No 81
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=30.60 E-value=93 Score=23.33 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=35.9
Q ss_pred ccEEEEEeeCCCceeeeEEEEEEEecCCceeEEEEEecCccccCceeEEEEEEEEecCCCCceEEEE-EEEEEcC
Q 036858 52 GSIKKITFAEGGQVNDVKHKIEEVDKVNLKTSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTI-CKLYTKG 125 (160)
Q Consensus 52 Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~-~~y~~~~ 125 (160)
|..+.|.++-|.+. .-.++..++--+.|-+.|.-.||.++...| ++|+++.|- ..|++.+
T Consensus 50 GVL~SWAvPkGPs~-dp~~kRLAv~~EDHpl~Y~~FEG~IP~g~Y-------------GaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKGPSL-DPADKRLAVHVEDHPLDYADFEGTIPKGEY-------------GAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcCCCC-CcccceeeeEccCccchhccccccccCCcc-------------CCccEEEEeCceEEeCC
Confidence 56788888766432 222333467777777777777776653322 246777774 4455554
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.25 E-value=79 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=26.2
Q ss_pred EEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 117 TICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 117 w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
+.+.+.+.....+ ++. ..+.++.+.+.+|+++.++|+-|
T Consensus 233 ~~i~i~~~~~~~~-~~~---~~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 233 VTLHFYPAWDSFP-SED---AQADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred EEEEEecCCCCCC-CCC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 6666654322212 222 34578999999999999999865
No 83
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=29.39 E-value=91 Score=25.47 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 116 KTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 116 ~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
.|.+.+++..+..+.. . ..+.+..+.+.+|+++.++|+.|
T Consensus 257 ~~~i~~~~~~~~~~~~-d---~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLSA-D---DETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCCC-C---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 3666676533222222 1 34568899999999999999865
No 84
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=28.43 E-value=99 Score=25.03 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=26.0
Q ss_pred EEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 117 TICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 117 w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
+.+.+++..+.. +.+. ..+.+..+.+.+|+++.++|+.|
T Consensus 246 ~~i~~~~~~~~~-~~~~---~~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 246 YRLKIDPPLDDF-PGDD---EIAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred EEEEEeCCCCCC-CCCC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 666666432221 2222 34568899999999999999865
No 85
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=26.66 E-value=46 Score=26.92 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhCCCC
Q 036858 142 AAMVKALEAYLLANPDV 158 (160)
Q Consensus 142 ~~~~k~ie~yl~~~~~~ 158 (160)
-+++++||.||.+||..
T Consensus 220 D~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPGL 236 (258)
T ss_pred chHHHHHHHHHHHcccC
Confidence 37899999999999963
No 86
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=25.83 E-value=1.3e+02 Score=17.93 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCC
Q 036858 134 FNAGKEKSAAMVKALEAYLLANP 156 (160)
Q Consensus 134 ~~~~~~~~~~~~k~ie~yl~~~~ 156 (160)
.+..++.+...++.+|+.|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34466778899999999999887
No 87
>PF11647 PMT_C: C-terminal region of Pasteurella multocida toxin residues 569-1285; InterPro: IPR020972 This entry represents the C-terminal domain of Pasteurella multocida toxin (PMT) which displays a Trojan horse-like shape with three domains, C1, C2 and C3. The C3 domain possesses the Cys-His-Asp catalytic triad. PMT is an enzyme toxin carrying the cysteine protease-like catalytic triad which functions on the cytoplasmic face of the plasma membrane of target cells []. This entry is also found in the Vibrio cholerae RTX toxin [], a bacterial toxin that self-process by a cysteine peptidase mechanism. These cysteine peptidases belong to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). ; PDB: 4ERR_A 2EC5_B 2EBH_X 2EBF_X.
Probab=25.81 E-value=94 Score=19.79 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 036858 140 KSAAMVKALEAYLLANPDV 158 (160)
Q Consensus 140 ~~~~~~k~ie~yl~~~~~~ 158 (160)
....+-+.||.|+..|||.
T Consensus 43 ~l~~L~~~ie~yl~~hp~s 61 (66)
T PF11647_consen 43 TLYELRKQIEHYLLDHPDS 61 (66)
T ss_dssp HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 4556679999999999984
No 88
>PRK14681 hypothetical protein; Provisional
Probab=25.36 E-value=2.8e+02 Score=20.74 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=42.8
Q ss_pred eEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 036858 82 TSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPD 157 (160)
Q Consensus 82 ~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~ 157 (160)
-.|+|++-+. ..-.+.|.++...+++++|=..+.+-+......|.+.+. ...-..+.+.-+.||..|+.
T Consensus 60 ~Gy~IL~rN~-----R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRNW-----HCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEEE-----eCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 4678876553 233678888887544577666666654433333444443 22456788888999988763
No 89
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=25.35 E-value=1.4e+02 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 036858 137 GKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 137 ~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
..+.+..+.+.||+.+.++|+.|
T Consensus 162 ~~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 162 VEEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 44578899999999999999875
No 90
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=25.07 E-value=3.4e+02 Score=21.23 Aligned_cols=141 Identities=10% Similarity=0.001 Sum_probs=73.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeeEEEEcCCCCCccE-EEEEeeCCCce---e-e-eEEEEEEEecCC
Q 036858 6 FESNDTYAVPPARMFKALVLESDQLFPKIFPDAIKNIDVVEGDGGAGSI-KKITFAEGGQV---N-D-VKHKIEEVDKVN 79 (160)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~l~pk~~P~~v~s~e~~eG~g~~Gsv-r~~~~~~g~~~---~-~-~kErl~~~D~~~ 79 (160)
...|..|+..++++|+.+. +... ..+|-|. ++++++++.=+.-=+| |.++....++. . . .--+.....+.-
T Consensus 49 ~R~Egvv~~~~~ev~d~v~-~~~~-r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~ 125 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR-PGPY-RLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL 125 (202)
T ss_pred EEEEEEecCCHHHHHHHHh-cccc-hhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe
Confidence 4567778899999999995 7664 6799986 9999998763211123 34443322211 0 1 111111222222
Q ss_pred ceeEEEEEecCccccCc---eeEEEEEEEEecCCC--CceEEEEEEEEEcCCccCChhhhhh-HHHHHHHHHHHHHHHH
Q 036858 80 LKTSYSIIEGAILADQL---EKISYDNQWVPSPDG--GSICKTICKLYTKGELEVTEEQFNA-GKEKSAAMVKALEAYL 152 (160)
Q Consensus 80 ~~~~y~vieg~~~~~~~---~~~~~~~~v~~~~~g--~s~v~w~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 152 (160)
.+.+-++.-...++ +| .++-.-+-+.|.+++ .|.++|-+..+.++. .|...++. +-.....++..|..+|
T Consensus 126 ~s~gvs~~~~~~pp-g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 126 LSCGVSIEYEEARP-NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEEeeecCCCCCC-CeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22333332222211 11 112233556777654 688999999888764 44555543 2222445555554443
No 91
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.88 E-value=1.1e+02 Score=24.79 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=25.0
Q ss_pred EEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 117 TICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 117 w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
+.+.+++.-...+ ++. ..+....+.+.+|+++.++|+-|
T Consensus 250 ~~i~~~~~~~~~~-~~~---~~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 250 YRLVIHPPLEDFP-GES---EEADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred EEEEEeCCCcCCC-CCC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 6667764322112 222 22347899999999999999865
No 92
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=24.50 E-value=2.2e+02 Score=18.96 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=32.2
Q ss_pred EEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCC
Q 036858 83 SYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANP 156 (160)
Q Consensus 83 ~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~ 156 (160)
.|++++-+ |..-.+.|.+.... |+++|=-.+.+-......+|.+.++ ......+.++...||..||
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 46777654 33345788888775 4555544444443333233344333 2235678888889999988
No 93
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=23.32 E-value=1.6e+02 Score=23.47 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=27.9
Q ss_pred EEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 036858 115 CKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 115 v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
..|.+.+++.-+....+ . ..+.+..+.+.+|+.+.+||+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE-D---IEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc-h---HHHHHHHHHHHHHHHHHcChHhh
Confidence 45777777543222222 1 34578999999999999999864
No 94
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=23.09 E-value=4.6e+02 Score=22.40 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=26.3
Q ss_pred CceEEEEEEEEEcCCcc---C--ChhhhhhHHHHHHHHHHHHHHHHh
Q 036858 112 GSICKTICKLYTKGELE---V--TEEQFNAGKEKSAAMVKALEAYLL 153 (160)
Q Consensus 112 ~s~v~w~~~y~~~~~~~---~--~~~~~~~~~~~~~~~~k~ie~yl~ 153 (160)
+-.++|+--|.-..+.. + +.+....+.+.+.+...++..||.
T Consensus 262 ~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~ 308 (356)
T PF11979_consen 262 GKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLK 308 (356)
T ss_pred CeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999998654422 2 222222345556777777777764
No 95
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=22.58 E-value=2.2e+02 Score=18.12 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=5.9
Q ss_pred CceeEEEEEecC
Q 036858 79 NLKTSYSIIEGA 90 (160)
Q Consensus 79 ~~~~~y~vieg~ 90 (160)
+..+.|++++|+
T Consensus 28 n~~i~y~i~~~~ 39 (93)
T PF00028_consen 28 NSQITYSILGGN 39 (93)
T ss_dssp TSSEEEEEEETT
T ss_pred CceEEEEEecCc
Confidence 444555555444
No 96
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.81 E-value=1.3e+02 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 036858 137 GKEKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 137 ~~~~~~~~~k~ie~yl~~~~~~~ 159 (160)
..+....+.+.||+++.++|+-|
T Consensus 252 ~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 252 VAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred HHHHHHHHHHHHHHHHHhChHHH
Confidence 45678999999999999999865
No 97
>PRK14680 hypothetical protein; Provisional
Probab=20.72 E-value=3.4e+02 Score=19.62 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=41.8
Q ss_pred eEEEEEecCccccCceeEEEEEEEEecCCCCceEEEEEEEEEcCCccCChhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 036858 82 TSYSIIEGAILADQLEKISYDNQWVPSPDGGSICKTICKLYTKGELEVTEEQFNAGKEKSAAMVKALEAYLLANPD 157 (160)
Q Consensus 82 ~~y~vieg~~~~~~~~~~~~~~~v~~~~~g~s~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~~~ 157 (160)
-.|+|++-+.. .-.+.|.+.... |+++|=-.+.+-.......|.+.++ ...-..+.+.-+.||..|+.
T Consensus 23 ~Gy~Il~rN~r-----~~~GEIDiIa~~-~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 23 TGHRILARNWR-----HGGLELDIVCED-GDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCCEEEEeecC-----CCCCeEEEEEEe-CCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 35788876543 235788888774 4566665555544333333444443 23466788888999988873
No 98
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.24 E-value=1.8e+02 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 036858 139 EKSAAMVKALEAYLLANPDVC 159 (160)
Q Consensus 139 ~~~~~~~k~ie~yl~~~~~~~ 159 (160)
+.+..+.+.+|+++.++|+-|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 468899999999999999865
Done!