BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036860
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query: 75  DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134
           D V F+ S S  E   L   C  +  T KDE FG+ P+EA A+ KPV A + GG  ET+ 
Sbjct: 78  DNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEGGFKETVI 137

Query: 135 NEE 137
           NE+
Sbjct: 138 NEK 140


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 65  KSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124
           + +AE  G+  R+ F+     +E  A+      V     +E FG+V +EA A+  PV A 
Sbjct: 276 RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAA 335

Query: 125 DSGG-PVETIKNE-----------EFSLSMAKLIQEPQMAKNMGENA 159
             GG P+   + E            ++ ++A L+ + +    MGE+A
Sbjct: 336 RVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDA 382


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 65  KSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124
           + +AE  G+  R+ F+     +E  A+      V     +E FG+V +EA A+  PV A 
Sbjct: 296 RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAA 355

Query: 125 DSGG-PVETIKNE-----------EFSLSMAKLIQEPQMAKNMGENA 159
             GG P+   + E            ++ ++A L+ + +    MGE+A
Sbjct: 356 RVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDA 402


>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score = 35.4 bits (80), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 95  CLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKNEEFSL 140
            L  FY P    FG+ P+EAMA+  P     +GGP E +   ++ +
Sbjct: 363 ALTSFYEP----FGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGV 404


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 33.9 bits (76), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 61  LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLC----VFYTPK-DEHFGIVPLEAM 115
           ++++  L E   ++ +  +I+S     RN  L+  +C     F  P   E FG+  +EAM
Sbjct: 626 MKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAM 685

Query: 116 AAYKPVSACDSGGPVETI 133
               P  A   GGP E I
Sbjct: 686 TCGLPTFATCKGGPAEII 703


>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 30.8 bits (68), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 105 EHFGIVPLEAMAAYKPVSACDSGGPVETIKNEEFSL------------SMAKLIQEPQMA 152
           E FG+V LEAMA   P      GG  E I++ +                  +L+++ ++ 
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELH 354

Query: 153 KNMGENA 159
           +NMGE A
Sbjct: 355 RNMGERA 361


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 30.8 bits (68), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 55  RENVEYLEELK--SLAERNGMSDRVNFITSCSTTERNALLFECLC----VFYTPK-DEHF 107
           ++N E  E  K   L E   ++ +  +I+S     RN  L+  +C     F  P   E F
Sbjct: 618 KDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYICDTKGAFVQPALYEAF 677

Query: 108 GIVPLEAMAAYKPVSACDSGGPVETI 133
           G+  +EA     P  A   GGP E I
Sbjct: 678 GLTVVEAXTCGLPTFATCKGGPAEII 703


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 30.8 bits (68), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 73  MSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVET 132
           + DRV F+          LL     +    + E FG+V LEAMA   P      GG  E 
Sbjct: 285 IEDRVLFLGKQDNVAE--LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEV 342

Query: 133 IKNEEFSL------------SMAKLIQEPQMAKNMGENA 159
           I++ +                  +L+++ ++ +NMGE A
Sbjct: 343 IQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERA 381


>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
           Thiobacillus Denitrificans To 2.15a
          Length = 444

 Score = 29.6 bits (65), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 41  QFDKPHSCGCDKLLRENVEYLEELK------SLAER--NGMSDRVN 78
           QF++ ++ G  +L RE+V Y EEL        +A R  NG+  RV+
Sbjct: 225 QFERAYTEGISQLTREDVRYAEELGYRIKLLGIARRAENGIELRVH 270


>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
           Domain Of Fact Complex Subunit Spt16 (form A)
 pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
           Domain Of Fact Complex Subunit Spt16 (form A)
          Length = 444

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 64  LKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123
           L  LAE  G +  VN +      E N  LFE +  +    ++  G+ P +     K ++ 
Sbjct: 92  LTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQG-KFINE 150

Query: 124 CDSGGPVETIKNE----EFSLSMAK 144
            DS    E +K+E    + SL +AK
Sbjct: 151 WDS--IFEPVKSEFNLVDASLGLAK 173


>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
           Domain Of Fact Complex Subunit Spt16 (Form B)
          Length = 444

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 64  LKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123
           L  LAE  G +  VN +      E N  LFE +  +    ++  G+ P +     K ++ 
Sbjct: 92  LTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQG-KFINE 150

Query: 124 CDSGGPVETIKNE----EFSLSMAK 144
            DS    E +K+E    + SL +AK
Sbjct: 151 WDS--IFEPVKSEFNLVDASLGLAK 173


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 105 EHFGIVPLEAMAAYKPVSACDSGGPVETI 133
           E  GIV LEA A   PV A  SGG  ET+
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETV 318


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 105 EHFGIVPLEAMAAYKPVSACDSGGPVETI 133
           E  GIV LEA A   PV A  SGG  ET+
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETV 318


>pdb|3M1M|A Chain A, Crystal Structure Of The Primase-Polymerase From
           Sulfolobus Islandicus
          Length = 335

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 103 KDEHFGIVPLEAMAAYKPVSACDSGGPVETIKNEEFSLSMAKLIQE 148
           K+E   +V  E +   K +   DSG PVE IK E  + S  KLI+E
Sbjct: 216 KEEEDTVVEFEELR--KELVKRDSGKPVEKIKEEICTKSPPKLIKE 259


>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
           Pyrococcus Horikoshii Ot3
 pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
           Pyrococcus Horikoshii Ot3
          Length = 388

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 32  VLYLAVNVYQFDKPHSC------GCDKLLRE---NVEYLEELKSLAERNGMSDRVNFITS 82
           V+ L +    FD P           DK L     N+  LE  +++AE+     + N I +
Sbjct: 27  VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEK---LKKQNGIEA 83

Query: 83  CSTTERNALL------FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVE--TIK 134
              TE   LL         L  F   KD    ++P  A  +Y P      G PVE  T +
Sbjct: 84  DPKTEIMVLLGANQAFLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYE 141

Query: 135 NEEFSLSMAKL 145
            +EF L++ +L
Sbjct: 142 EDEFRLNVDEL 152


>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
 pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
 pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
 pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
          Length = 389

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 32  VLYLAVNVYQFDKPHSC------GCDKLLRE---NVEYLEELKSLAERNGMSDRVNFITS 82
           V+ L +    FD P           DK L     N+  LE  +++AE+     + N I +
Sbjct: 28  VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEK---LKKQNGIEA 84

Query: 83  CSTTERNALL------FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVE--TIK 134
              TE   LL         L  F   KD    ++P  A  +Y P      G PVE  T +
Sbjct: 85  DPKTEIMVLLGANQAFLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYE 142

Query: 135 NEEFSLSMAKL 145
            +EF L++ +L
Sbjct: 143 EDEFRLNVDEL 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,472,394
Number of Sequences: 62578
Number of extensions: 165569
Number of successful extensions: 377
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 16
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)