Query 036860
Match_columns 159
No_of_seqs 154 out of 1729
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15427 colanic acid biosynth 100.0 1.6E-29 3.5E-34 188.6 14.7 154 2-159 175-382 (406)
2 cd04946 GT1_AmsK_like This fam 100.0 5E-27 1.1E-31 175.4 15.6 156 1-159 183-388 (407)
3 cd05844 GT1_like_7 Glycosyltra 99.9 2E-26 4.2E-31 169.5 15.6 154 2-159 143-347 (367)
4 TIGR03449 mycothiol_MshA UDP-N 99.9 1.8E-26 3.8E-31 172.2 15.1 155 2-159 164-379 (405)
5 PLN02949 transferase, transfer 99.9 4.2E-26 9.2E-31 172.1 16.9 155 1-159 220-434 (463)
6 cd03796 GT1_PIG-A_like This fa 99.9 1.5E-26 3.3E-31 172.4 14.2 151 2-155 145-340 (398)
7 TIGR03088 stp2 sugar transfera 99.9 2E-26 4.3E-31 170.3 13.7 153 2-159 137-349 (374)
8 PLN02871 UDP-sulfoquinovose:DA 99.9 2.9E-26 6.2E-31 174.0 14.3 152 1-159 205-411 (465)
9 cd03818 GT1_ExpC_like This fam 99.9 2.8E-26 6E-31 170.9 13.5 152 2-159 157-377 (396)
10 cd03805 GT1_ALG2_like This fam 99.9 6.7E-26 1.4E-30 168.2 15.0 157 1-159 154-375 (392)
11 cd03806 GT1_ALG11_like This fa 99.9 7.8E-26 1.7E-30 169.5 15.4 153 1-157 189-402 (419)
12 PRK09922 UDP-D-galactose:(gluc 99.9 3.8E-26 8.2E-31 168.2 12.7 147 1-151 133-327 (359)
13 TIGR02468 sucrsPsyn_pln sucros 99.9 8.5E-26 1.9E-30 180.2 14.5 100 60-159 533-648 (1050)
14 cd03799 GT1_amsK_like This is 99.9 2.8E-25 6.1E-30 162.3 14.4 155 2-159 131-338 (355)
15 TIGR02472 sucr_P_syn_N sucrose 99.9 2.2E-25 4.8E-30 168.0 14.2 97 63-159 305-417 (439)
16 cd03812 GT1_CapH_like This fam 99.9 1.5E-25 3.2E-30 164.2 12.5 150 2-158 138-341 (358)
17 PRK15484 lipopolysaccharide 1, 99.9 4.6E-25 9.9E-30 163.6 14.4 150 2-159 140-354 (380)
18 PRK15490 Vi polysaccharide bio 99.9 2.4E-25 5.2E-30 168.2 12.7 126 5-135 342-513 (578)
19 cd03804 GT1_wbaZ_like This fam 99.9 5.4E-25 1.2E-29 161.4 14.2 146 1-158 153-337 (351)
20 cd03813 GT1_like_3 This family 99.9 2.5E-25 5.4E-30 169.2 12.6 151 2-159 245-453 (475)
21 cd04962 GT1_like_5 This family 99.9 7.6E-25 1.6E-29 161.3 14.2 152 2-159 143-347 (371)
22 TIGR02918 accessory Sec system 99.9 1.3E-24 2.9E-29 165.4 15.3 154 2-159 271-477 (500)
23 PRK10307 putative glycosyl tra 99.9 1E-24 2.2E-29 163.3 13.9 153 2-159 172-384 (412)
24 cd03795 GT1_like_4 This family 99.9 2.5E-24 5.4E-29 157.4 14.8 154 2-159 138-343 (357)
25 PLN02939 transferase, transfer 99.9 2.8E-24 6E-29 169.8 15.5 158 1-158 693-945 (977)
26 PRK15179 Vi polysaccharide bio 99.9 1.1E-24 2.3E-29 170.2 12.4 142 3-149 460-660 (694)
27 cd03800 GT1_Sucrose_synthase T 99.9 3.3E-24 7.1E-29 159.1 14.1 155 2-159 164-379 (398)
28 cd04955 GT1_like_6 This family 99.9 3.3E-24 7.1E-29 157.2 13.4 153 1-159 143-341 (363)
29 PRK14098 glycogen synthase; Pr 99.9 4.9E-24 1.1E-28 162.2 14.1 156 1-158 220-464 (489)
30 cd03819 GT1_WavL_like This fam 99.9 1.1E-23 2.4E-28 154.1 14.0 153 2-159 125-342 (355)
31 cd03816 GT1_ALG1_like This fam 99.9 8.7E-24 1.9E-28 158.4 13.3 109 51-159 271-395 (415)
32 TIGR02149 glgA_Coryne glycogen 99.9 1.6E-23 3.4E-28 155.3 14.0 156 2-159 145-363 (388)
33 cd04949 GT1_gtfA_like This fam 99.9 1.1E-23 2.4E-28 155.5 12.8 152 2-159 158-356 (372)
34 cd03817 GT1_UGDG_like This fam 99.9 2.4E-23 5.2E-28 152.1 14.4 154 1-159 148-354 (374)
35 TIGR02095 glgA glycogen/starch 99.9 2.5E-23 5.5E-28 158.2 14.5 157 1-159 205-452 (473)
36 cd03809 GT1_mtfB_like This fam 99.9 1.6E-23 3.4E-28 153.2 12.8 155 2-159 141-347 (365)
37 cd03801 GT1_YqgM_like This fam 99.9 3.5E-23 7.5E-28 150.4 14.3 155 2-159 145-352 (374)
38 PRK14099 glycogen synthase; Pr 99.9 4.9E-23 1.1E-27 156.7 14.8 152 1-159 209-458 (485)
39 PRK00654 glgA glycogen synthas 99.9 4.7E-23 1E-27 156.5 14.1 153 1-159 197-442 (466)
40 TIGR02470 sucr_synth sucrose s 99.9 4.7E-23 1E-27 161.6 13.5 100 60-159 604-724 (784)
41 TIGR03087 stp1 sugar transfera 99.9 6.7E-23 1.5E-27 152.8 13.8 148 2-159 173-373 (397)
42 cd03821 GT1_Bme6_like This fam 99.9 1E-22 2.2E-27 148.7 14.4 153 2-159 150-356 (375)
43 PHA01630 putative group 1 glyc 99.9 5.9E-23 1.3E-27 149.5 12.8 145 1-148 94-294 (331)
44 cd03823 GT1_ExpE7_like This fa 99.9 2.1E-22 4.6E-27 146.7 14.1 150 3-159 145-340 (359)
45 cd03820 GT1_amsD_like This fam 99.9 1.9E-22 4.1E-27 145.8 13.5 151 1-159 135-330 (348)
46 cd04951 GT1_WbdM_like This fam 99.9 3.4E-22 7.3E-27 146.3 13.5 151 2-157 131-336 (360)
47 cd03811 GT1_WabH_like This fam 99.9 3.1E-22 6.8E-27 144.8 13.0 152 2-158 136-342 (353)
48 cd03825 GT1_wcfI_like This fam 99.9 2.8E-22 6.2E-27 147.0 12.8 155 2-159 136-341 (365)
49 cd03802 GT1_AviGT4_like This f 99.9 9.8E-22 2.1E-26 142.8 14.1 140 2-149 132-309 (335)
50 cd03814 GT1_like_2 This family 99.9 7.1E-22 1.5E-26 144.3 13.1 146 2-159 145-343 (364)
51 cd03798 GT1_wlbH_like This fam 99.9 9.9E-22 2.2E-26 143.2 13.6 147 1-151 148-347 (377)
52 cd03791 GT1_Glycogen_synthase_ 99.9 1.3E-21 2.9E-26 148.9 14.1 154 1-159 210-456 (476)
53 PLN02316 synthase/transferase 99.9 2.5E-21 5.3E-26 155.2 14.7 147 1-148 761-998 (1036)
54 cd03807 GT1_WbnK_like This fam 99.9 1.6E-21 3.5E-26 141.9 12.6 152 2-159 137-343 (365)
55 cd03808 GT1_cap1E_like This fa 99.9 1.4E-21 3.1E-26 141.7 12.3 154 2-159 139-340 (359)
56 cd03822 GT1_ecORF704_like This 99.9 3.1E-21 6.7E-26 141.1 14.0 92 67-159 239-345 (366)
57 PLN00142 sucrose synthase 99.9 8.3E-22 1.8E-26 154.8 11.3 98 62-159 629-747 (815)
58 KOG1111 N-acetylglucosaminyltr 99.9 8.7E-23 1.9E-27 144.8 5.2 142 2-146 146-333 (426)
59 cd03794 GT1_wbuB_like This fam 99.9 4.5E-21 9.7E-26 140.6 14.2 154 1-159 165-376 (394)
60 PHA01633 putative glycosyl tra 99.9 8.2E-21 1.8E-25 137.5 14.6 144 3-152 94-313 (335)
61 cd03792 GT1_Trehalose_phosphor 99.9 4.4E-21 9.6E-26 141.9 13.1 108 52-159 224-348 (372)
62 PLN02501 digalactosyldiacylgly 99.9 6.6E-21 1.4E-25 146.6 12.5 136 2-153 499-686 (794)
63 PLN02275 transferase, transfer 99.9 1.3E-20 2.8E-25 139.5 13.0 138 1-146 165-371 (371)
64 PF00534 Glycos_transf_1: Glyc 99.9 1.9E-21 4E-26 129.4 6.9 111 49-159 47-169 (172)
65 PRK10125 putative glycosyl tra 99.8 1.3E-20 2.8E-25 140.8 10.7 129 2-135 191-347 (405)
66 PLN02846 digalactosyldiacylgly 99.8 7.1E-20 1.5E-24 137.4 11.7 132 1-148 180-363 (462)
67 KOG0853 Glycosyltransferase [C 99.8 1E-18 2.2E-23 130.3 14.5 156 2-159 210-444 (495)
68 TIGR02400 trehalose_OtsA alpha 99.8 3.4E-18 7.4E-23 129.1 13.5 156 2-157 184-432 (456)
69 cd04950 GT1_like_1 Glycosyltra 99.8 7.1E-19 1.5E-23 130.3 9.0 135 2-147 154-339 (373)
70 cd03788 GT1_TPS Trehalose-6-Ph 99.8 5.9E-18 1.3E-22 128.3 10.1 81 77-157 343-437 (460)
71 KOG1387 Glycosyltransferase [C 99.8 2.5E-17 5.4E-22 117.0 12.1 153 2-159 223-436 (465)
72 cd03793 GT1_Glycogen_synthase_ 99.8 1.2E-17 2.6E-22 126.9 10.9 70 87-157 467-560 (590)
73 PRK05749 3-deoxy-D-manno-octul 99.7 2.4E-16 5.1E-21 118.7 13.0 152 2-159 179-399 (425)
74 PLN02605 monogalactosyldiacylg 99.7 9.7E-16 2.1E-20 114.0 11.9 145 1-159 150-359 (382)
75 PLN03063 alpha,alpha-trehalose 99.6 2.6E-15 5.6E-20 120.0 12.6 101 56-156 326-452 (797)
76 cd03785 GT1_MurG MurG is an N- 99.6 3E-15 6.5E-20 109.8 10.3 141 1-159 134-335 (350)
77 PRK13609 diacylglycerol glucos 99.6 2.4E-14 5.2E-19 106.4 13.8 146 1-158 147-348 (380)
78 PRK09814 beta-1,6-galactofuran 99.6 1.3E-14 2.7E-19 106.2 10.3 143 1-159 123-309 (333)
79 TIGR01133 murG undecaprenyldip 99.6 2.1E-14 4.6E-19 105.3 8.8 90 62-159 222-332 (348)
80 PRK14501 putative bifunctional 99.5 3.2E-14 7E-19 113.4 10.0 74 76-149 343-429 (726)
81 PRK13608 diacylglycerol glucos 99.5 8.4E-14 1.8E-18 103.9 11.4 145 1-159 147-349 (391)
82 PRK00726 murG undecaprenyldiph 99.5 1.4E-13 3E-18 101.5 10.2 95 55-159 219-335 (357)
83 COG0297 GlgA Glycogen synthase 99.5 9.1E-13 2E-17 99.7 13.7 156 1-158 208-456 (487)
84 TIGR00236 wecB UDP-N-acetylglu 99.5 2.8E-13 6E-18 100.3 9.7 83 71-158 251-344 (365)
85 cd01635 Glycosyltransferase_GT 99.5 2.2E-13 4.7E-18 93.5 8.5 86 50-135 136-222 (229)
86 TIGR02398 gluc_glyc_Psyn gluco 99.4 3.7E-12 8E-17 96.7 13.3 90 60-149 340-449 (487)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 6.5E-13 1.4E-17 98.0 9.0 147 1-156 141-345 (363)
88 COG0438 RfaG Glycosyltransfera 99.4 1.5E-12 3.2E-17 93.7 10.6 151 2-157 151-351 (381)
89 PF13692 Glyco_trans_1_4: Glyc 99.4 7.7E-13 1.7E-17 84.5 5.2 71 75-148 53-135 (135)
90 TIGR03713 acc_sec_asp1 accesso 99.4 2.6E-11 5.6E-16 93.2 13.2 80 75-158 409-498 (519)
91 PF05693 Glycogen_syn: Glycoge 99.4 5.2E-12 1.1E-16 96.4 9.2 72 86-157 461-557 (633)
92 PRK00025 lpxB lipid-A-disaccha 99.3 2.2E-11 4.7E-16 90.5 9.8 90 58-158 230-351 (380)
93 PF13524 Glyco_trans_1_2: Glyc 99.2 1.2E-11 2.6E-16 74.0 4.6 63 97-159 1-73 (92)
94 TIGR02919 accessory Sec system 99.2 5.7E-10 1.2E-14 84.2 13.8 142 3-154 241-417 (438)
95 PLN03064 alpha,alpha-trehalose 99.1 2.9E-09 6.3E-14 86.2 12.6 81 77-157 441-537 (934)
96 KOG2941 Beta-1,4-mannosyltrans 99.1 1.8E-09 4E-14 77.5 9.3 105 54-158 298-419 (444)
97 TIGR00215 lpxB lipid-A-disacch 98.7 3.1E-07 6.8E-12 68.7 10.5 85 64-157 241-360 (385)
98 TIGR02094 more_P_ylases alpha- 98.6 2E-06 4.2E-11 67.6 12.5 72 60-131 443-516 (601)
99 PF13844 Glyco_transf_41: Glyc 98.3 2.7E-06 5.8E-11 64.6 8.0 97 61-158 327-440 (468)
100 PF00982 Glyco_transf_20: Glyc 98.2 3.5E-05 7.7E-10 59.1 11.0 78 77-154 354-447 (474)
101 COG0380 OtsA Trehalose-6-phosp 98.2 9.2E-05 2E-09 56.6 13.0 77 77-153 360-451 (486)
102 PRK10117 trehalose-6-phosphate 98.1 3.4E-05 7.3E-10 58.9 8.6 94 60-153 310-425 (474)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.0 0.00047 1E-08 51.5 13.5 102 56-159 268-397 (419)
104 COG0707 MurG UDP-N-acetylgluco 98.0 8.3E-05 1.8E-09 55.1 9.5 77 77-159 237-335 (357)
105 COG3914 Spy Predicted O-linked 98.0 8.4E-05 1.8E-09 57.3 9.5 98 57-155 470-584 (620)
106 TIGR01426 MGT glycosyltransfer 97.9 7.3E-05 1.6E-09 56.1 8.2 75 74-155 274-366 (392)
107 TIGR03492 conserved hypothetic 97.9 0.00054 1.2E-08 51.7 12.4 73 77-156 281-372 (396)
108 KOG3742 Glycogen synthase [Car 97.9 8.8E-06 1.9E-10 60.9 2.7 50 86-135 492-541 (692)
109 cd04299 GT1_Glycogen_Phosphory 97.9 0.00028 6.1E-09 57.2 11.2 71 62-132 534-606 (778)
110 PLN02205 alpha,alpha-trehalose 97.9 0.00014 3E-09 59.6 9.5 71 77-147 417-516 (854)
111 PF04101 Glyco_tran_28_C: Glyc 97.9 2E-05 4.3E-10 52.2 4.0 78 75-158 55-154 (167)
112 COG4641 Uncharacterized protei 97.6 3.8E-05 8.3E-10 56.3 2.5 85 75-159 237-338 (373)
113 TIGR03568 NeuC_NnaA UDP-N-acet 97.4 0.0016 3.5E-08 48.6 9.2 71 75-153 262-343 (365)
114 cd03784 GT1_Gtf_like This fami 97.4 0.00062 1.4E-08 51.2 7.0 69 74-149 287-373 (401)
115 TIGR03590 PseG pseudaminic aci 97.4 0.00071 1.5E-08 48.6 6.9 58 60-127 212-269 (279)
116 TIGR00661 MJ1255 conserved hyp 97.4 0.00089 1.9E-08 49.0 7.0 56 74-134 228-283 (321)
117 PHA03392 egt ecdysteroid UDP-g 97.2 0.003 6.5E-08 49.2 8.7 76 73-155 344-439 (507)
118 PRK12446 undecaprenyldiphospho 97.1 0.0033 7.1E-08 46.8 7.8 66 86-155 244-332 (352)
119 PF07429 Glyco_transf_56: 4-al 97.1 0.013 2.8E-07 43.1 10.4 77 57-134 227-305 (360)
120 COG1819 Glycosyl transferases, 97.1 0.0047 1E-07 46.8 8.3 76 73-155 282-375 (406)
121 COG0763 LpxB Lipid A disacchar 97.0 0.0022 4.9E-08 47.5 5.8 63 89-156 259-352 (381)
122 PF02684 LpxB: Lipid-A-disacch 96.8 0.02 4.3E-07 43.0 9.5 60 89-153 255-345 (373)
123 PF00201 UDPGT: UDP-glucoronos 96.6 0.0078 1.7E-07 46.7 6.4 75 75-154 323-415 (500)
124 PF13528 Glyco_trans_1_3: Glyc 96.6 0.008 1.7E-07 43.7 6.0 54 76-134 233-286 (318)
125 PF02350 Epimerase_2: UDP-N-ac 96.5 0.026 5.7E-07 41.9 8.6 89 59-156 226-326 (346)
126 PLN02562 UDP-glycosyltransfera 96.5 0.011 2.4E-07 45.4 6.7 75 75-154 328-419 (448)
127 PRK02797 4-alpha-L-fucosyltran 96.5 0.075 1.6E-06 38.7 10.2 69 56-125 187-257 (322)
128 PLN03004 UDP-glycosyltransfera 96.5 0.015 3.3E-07 44.7 7.1 74 75-153 334-429 (451)
129 COG0381 WecB UDP-N-acetylgluco 96.5 0.081 1.8E-06 39.6 10.5 85 69-158 256-351 (383)
130 PLN02208 glycosyltransferase f 96.4 0.0074 1.6E-07 46.3 5.3 76 76-157 312-411 (442)
131 PLN02410 UDP-glucoronosyl/UDP- 96.3 0.0084 1.8E-07 46.1 5.1 70 75-149 324-411 (451)
132 PLN02173 UDP-glucosyl transfer 96.3 0.0099 2.1E-07 45.7 5.5 70 75-149 317-409 (449)
133 PLN02448 UDP-glycosyltransfera 96.3 0.013 2.8E-07 45.3 5.8 69 76-149 324-416 (459)
134 PF10087 DUF2325: Uncharacteri 96.3 0.031 6.8E-07 33.5 6.3 70 58-129 9-86 (97)
135 PF04464 Glyphos_transf: CDP-G 95.9 0.15 3.1E-06 38.1 10.0 69 75-150 252-338 (369)
136 PF03016 Exostosin: Exostosin 95.8 0.016 3.4E-07 41.9 4.1 42 84-125 226-268 (302)
137 PF15024 Glyco_transf_18: Glyc 95.7 0.028 6.1E-07 43.9 5.5 51 74-126 321-372 (559)
138 PLN00414 glycosyltransferase f 95.7 0.038 8.2E-07 42.5 6.1 76 77-157 314-412 (446)
139 PLN00164 glucosyltransferase; 95.5 0.031 6.7E-07 43.4 5.1 68 77-149 341-432 (480)
140 PLN03007 UDP-glucosyltransfera 95.4 0.074 1.6E-06 41.4 6.9 70 75-149 345-441 (482)
141 COG3980 spsG Spore coat polysa 95.4 0.031 6.7E-07 40.0 4.2 76 75-157 210-302 (318)
142 PLN02207 UDP-glycosyltransfera 95.2 0.091 2E-06 40.7 6.6 67 75-147 332-425 (468)
143 PLN02152 indole-3-acetate beta 95.1 0.057 1.2E-06 41.7 5.4 72 74-150 326-419 (455)
144 PLN02670 transferase, transfer 95.1 0.1 2.3E-06 40.5 6.7 67 77-149 341-430 (472)
145 PLN02764 glycosyltransferase f 95.0 0.063 1.4E-06 41.4 5.2 76 77-157 319-417 (453)
146 PLN02992 coniferyl-alcohol glu 94.9 0.062 1.4E-06 41.8 5.0 69 76-149 339-428 (481)
147 PF11071 DUF2872: Protein of u 94.7 0.64 1.4E-05 29.4 8.7 70 58-129 8-111 (141)
148 cd03789 GT1_LPS_heptosyltransf 94.6 0.27 5.9E-06 35.2 7.5 72 49-125 153-224 (279)
149 PRK10017 colanic acid biosynth 94.5 1.1 2.3E-05 34.6 10.7 65 84-153 317-397 (426)
150 PLN02210 UDP-glucosyl transfer 94.4 0.089 1.9E-06 40.6 4.8 68 78-150 327-417 (456)
151 PLN02554 UDP-glycosyltransfera 94.2 0.22 4.8E-06 38.8 6.7 46 109-154 371-447 (481)
152 PLN02863 UDP-glucoronosyl/UDP- 94.2 0.26 5.7E-06 38.4 7.1 43 76-125 344-388 (477)
153 PLN02555 limonoid glucosyltran 94.1 0.24 5.2E-06 38.6 6.6 68 75-149 337-430 (480)
154 TIGR02195 heptsyl_trn_II lipop 93.4 1.4 3.1E-05 32.4 9.5 70 49-124 207-276 (334)
155 PLN03015 UDP-glucosyl transfer 93.4 0.25 5.3E-06 38.4 5.6 65 77-147 337-425 (470)
156 PRK10422 lipopolysaccharide co 93.4 2.4 5.2E-05 31.5 10.7 71 49-124 215-287 (352)
157 PLN02534 UDP-glycosyltransfera 93.3 0.26 5.7E-06 38.5 5.7 46 75-125 344-389 (491)
158 PRK01021 lpxB lipid-A-disaccha 93.2 0.43 9.3E-06 38.1 6.7 63 89-157 483-580 (608)
159 TIGR02201 heptsyl_trn_III lipo 93.1 2.4 5.2E-05 31.4 10.4 71 49-124 213-285 (344)
160 KOG4626 O-linked N-acetylgluco 92.9 0.63 1.4E-05 37.4 7.1 95 62-157 802-913 (966)
161 PLN02167 UDP-glycosyltransfera 92.8 0.34 7.5E-06 37.7 5.7 41 109-149 369-435 (475)
162 PRK10916 ADP-heptose:LPS hepto 92.8 3 6.5E-05 31.0 10.4 70 49-123 213-285 (348)
163 KOG1021 Acetylglucosaminyltran 92.6 0.39 8.6E-06 37.3 5.7 69 58-126 302-376 (464)
164 TIGR03646 YtoQ_fam YtoQ family 92.1 2 4.4E-05 27.2 8.6 70 58-129 11-114 (144)
165 PF04007 DUF354: Protein of un 91.6 2.4 5.2E-05 31.6 8.5 33 90-127 244-276 (335)
166 PF01075 Glyco_transf_9: Glyco 91.5 1.7 3.6E-05 30.4 7.5 70 49-124 137-208 (247)
167 KOG1192 UDP-glucuronosyl and U 91.5 0.72 1.6E-05 35.8 6.1 47 75-125 335-381 (496)
168 PF05159 Capsule_synth: Capsul 91.1 0.43 9.3E-06 34.1 4.2 34 87-125 192-225 (269)
169 PF06258 Mito_fiss_Elm1: Mitoc 90.4 2 4.2E-05 31.7 7.1 51 75-128 209-259 (311)
170 COG3660 Predicted nucleoside-d 89.7 3.7 7.9E-05 29.6 7.6 73 54-129 202-276 (329)
171 TIGR02193 heptsyl_trn_I lipopo 88.8 7.4 0.00016 28.4 9.9 69 49-125 211-280 (319)
172 PRK10964 ADP-heptose:LPS hepto 88.8 3.7 8E-05 30.1 7.6 68 49-124 210-278 (322)
173 KOG1050 Trehalose-6-phosphate 87.6 2.4 5.3E-05 34.9 6.4 79 77-155 355-447 (732)
174 COG0859 RfaF ADP-heptose:LPS h 87.6 4.8 0.0001 29.8 7.6 70 49-125 208-277 (334)
175 COG0111 SerA Phosphoglycerate 84.5 9.2 0.0002 28.4 7.7 88 51-143 144-248 (324)
176 PF04230 PS_pyruv_trans: Polys 83.8 5.1 0.00011 27.9 6.1 45 77-126 240-284 (286)
177 PF01113 DapB_N: Dihydrodipico 82.4 0.85 1.8E-05 28.6 1.4 75 54-131 5-104 (124)
178 PF04392 ABC_sub_bind: ABC tra 81.4 18 0.00038 26.2 8.9 88 59-148 147-251 (294)
179 PRK08410 2-hydroxyacid dehydro 80.9 9.8 0.00021 28.0 6.7 86 53-143 149-247 (311)
180 PF02826 2-Hacid_dh_C: D-isome 80.1 8.7 0.00019 25.6 5.8 90 49-143 36-142 (178)
181 TIGR03609 S_layer_CsaB polysac 79.6 13 0.00029 26.8 7.1 35 86-125 242-276 (298)
182 COG2327 WcaK Polysaccharide py 77.8 29 0.00063 26.5 8.4 46 75-125 266-311 (385)
183 COG4671 Predicted glycosyl tra 77.4 23 0.00049 26.8 7.5 37 88-128 288-324 (400)
184 PRK05395 3-dehydroquinate dehy 76.9 14 0.00031 24.0 5.7 90 31-124 4-99 (146)
185 PRK06932 glycerate dehydrogena 76.6 14 0.0003 27.3 6.4 85 54-143 152-248 (314)
186 PF10649 DUF2478: Protein of u 76.4 7.4 0.00016 25.7 4.4 33 93-125 92-130 (159)
187 PF04312 DUF460: Protein of un 76.1 4 8.8E-05 26.1 3.0 25 111-135 69-94 (138)
188 COG5017 Uncharacterized conser 75.3 14 0.0003 24.0 5.2 64 77-144 48-114 (161)
189 PRK06487 glycerate dehydrogena 75.2 14 0.0003 27.3 6.1 85 54-143 153-248 (317)
190 KOG2648 Diphthamide biosynthes 75.0 6.8 0.00015 30.3 4.4 64 56-123 280-343 (453)
191 COG0036 Rpe Pentose-5-phosphat 75.0 11 0.00023 26.4 5.0 52 58-109 95-146 (220)
192 TIGR01088 aroQ 3-dehydroquinat 74.4 21 0.00044 23.1 6.1 89 32-124 3-97 (141)
193 TIGR02093 P_ylase glycogen/sta 73.8 10 0.00022 31.7 5.4 60 76-135 607-668 (794)
194 KOG3349 Predicted glycosyltran 72.4 4.3 9.3E-05 26.6 2.5 44 77-126 65-108 (170)
195 PLN02928 oxidoreductase family 71.9 20 0.00042 26.9 6.3 89 50-143 160-277 (347)
196 COG0058 GlgP Glucan phosphoryl 71.6 11 0.00023 31.3 5.1 73 62-134 544-618 (750)
197 PRK13015 3-dehydroquinate dehy 71.6 23 0.0005 23.0 5.7 90 31-124 4-99 (146)
198 PF00343 Phosphorylase: Carboh 71.2 9.1 0.0002 31.6 4.6 60 76-135 524-585 (713)
199 PF00852 Glyco_transf_10: Glyc 71.2 7.9 0.00017 29.0 4.1 80 76-155 203-305 (349)
200 PRK14089 ipid-A-disaccharide s 70.5 2.8 6.2E-05 31.3 1.6 32 89-125 230-261 (347)
201 COG3613 Nucleoside 2-deoxyribo 70.0 16 0.00035 24.4 4.8 72 57-128 18-108 (172)
202 COG1052 LdhA Lactate dehydroge 69.9 35 0.00075 25.4 7.1 86 53-143 150-251 (324)
203 cd01967 Nitrogenase_MoFe_alpha 69.8 45 0.00097 25.4 8.0 83 60-148 174-258 (406)
204 TIGR03682 arCOG04112 arCOG0411 69.6 10 0.00022 27.9 4.3 64 56-124 226-289 (308)
205 PF11238 DUF3039: Protein of u 68.4 4.5 9.7E-05 21.7 1.6 16 109-124 15-30 (58)
206 cd00466 DHQase_II Dehydroquina 67.1 28 0.00062 22.5 5.3 90 32-125 3-98 (140)
207 PTZ00408 NAD-dependent deacety 66.4 44 0.00096 23.7 8.8 55 73-127 149-208 (242)
208 COG4370 Uncharacterized protei 66.0 11 0.00023 28.0 3.7 68 86-159 303-390 (412)
209 cd01409 SIRT4 SIRT4: Eukaryoti 65.1 42 0.00091 24.1 6.6 54 75-128 181-241 (260)
210 TIGR00715 precor6x_red precorr 64.9 49 0.0011 23.7 7.6 79 67-145 166-254 (256)
211 PF01220 DHquinase_II: Dehydro 64.8 23 0.0005 22.9 4.6 86 32-124 4-98 (140)
212 PRK13125 trpA tryptophan synth 63.9 28 0.00061 24.6 5.5 52 59-110 116-167 (244)
213 PF05014 Nuc_deoxyrib_tr: Nucl 63.6 8.8 0.00019 23.4 2.6 38 90-127 57-98 (113)
214 PRK08883 ribulose-phosphate 3- 62.8 31 0.00068 24.1 5.5 49 61-109 95-143 (220)
215 PRK15409 bifunctional glyoxyla 62.7 48 0.001 24.6 6.7 85 54-143 150-251 (323)
216 PF00389 2-Hacid_dh: D-isomer 61.9 37 0.00079 21.2 8.0 52 76-129 20-71 (133)
217 PRK14986 glycogen phosphorylas 61.8 20 0.00042 30.2 4.8 59 76-134 623-683 (815)
218 PRK08745 ribulose-phosphate 3- 61.6 34 0.00074 24.0 5.4 48 61-108 99-146 (223)
219 TIGR00322 diphth2_R diphthamid 60.3 19 0.00041 26.9 4.2 65 56-124 246-310 (332)
220 PRK02910 light-independent pro 60.1 59 0.0013 25.9 7.1 83 59-147 175-259 (519)
221 COG1039 RnhC Ribonuclease HIII 60.0 46 0.00099 24.4 5.9 28 108-135 70-99 (297)
222 COG2984 ABC-type uncharacteriz 59.8 15 0.00032 27.2 3.5 68 58-126 174-247 (322)
223 PF10093 DUF2331: Uncharacteri 59.7 21 0.00046 27.1 4.4 48 76-128 245-292 (374)
224 TIGR02990 ectoine_eutA ectoine 59.1 26 0.00057 24.8 4.6 47 80-127 162-215 (239)
225 PRK09722 allulose-6-phosphate 58.8 42 0.0009 23.7 5.5 48 61-108 97-144 (229)
226 PF11440 AGT: DNA alpha-glucos 58.2 27 0.00059 25.6 4.5 52 77-128 256-314 (355)
227 PRK15438 erythronate-4-phospha 57.7 56 0.0012 25.0 6.3 88 50-142 117-221 (378)
228 TIGR00730 conserved hypothetic 57.6 45 0.00097 22.4 5.3 44 86-131 88-139 (178)
229 TIGR00272 DPH2 diphthamide bio 55.9 30 0.00065 27.4 4.8 65 56-124 295-359 (496)
230 PRK11790 D-3-phosphoglycerate 55.6 55 0.0012 25.2 6.1 86 53-143 155-254 (409)
231 PF03575 Peptidase_S51: Peptid 55.5 42 0.00092 21.7 4.9 64 60-125 1-76 (154)
232 cd01574 PBP1_LacI Ligand-bindi 55.4 67 0.0015 22.2 7.3 67 60-127 17-88 (264)
233 COG0803 LraI ABC-type metal io 54.1 44 0.00095 24.5 5.2 41 5-48 35-75 (303)
234 PRK14985 maltodextrin phosphor 54.0 26 0.00057 29.4 4.4 59 76-134 609-669 (798)
235 PRK08091 ribulose-phosphate 3- 53.3 54 0.0012 23.1 5.3 49 61-109 105-155 (228)
236 cd01410 SIRT7 SIRT7: Eukaryoti 53.0 73 0.0016 21.9 6.4 55 73-127 130-191 (206)
237 TIGR01278 DPOR_BchB light-inde 52.7 30 0.00065 27.5 4.4 82 59-146 175-258 (511)
238 PRK15469 ghrA bifunctional gly 52.5 54 0.0012 24.2 5.5 90 49-143 136-241 (312)
239 TIGR00725 conserved hypothetic 52.4 61 0.0013 21.3 5.3 40 87-128 84-125 (159)
240 PRK13243 glyoxylate reductase; 52.3 72 0.0016 23.8 6.2 74 53-128 154-243 (333)
241 PRK08005 epimerase; Validated 52.2 63 0.0014 22.4 5.5 48 61-108 95-142 (210)
242 PRK06718 precorrin-2 dehydroge 52.1 75 0.0016 21.8 9.6 45 91-135 67-111 (202)
243 PF06345 Drf_DAD: DRF Autoregu 51.7 13 0.00028 13.8 1.1 10 110-119 5-14 (15)
244 cd03174 DRE_TIM_metallolyase D 51.2 84 0.0018 22.1 10.0 88 57-145 144-245 (265)
245 PF03447 NAD_binding_3: Homose 51.2 14 0.0003 22.6 2.0 42 89-130 52-95 (117)
246 COG0036 Rpe Pentose-5-phosphat 50.5 61 0.0013 22.7 5.1 42 61-103 157-199 (220)
247 COG0052 RpsB Ribosomal protein 50.0 37 0.0008 24.3 4.0 27 108-134 169-196 (252)
248 TIGR01283 nifE nitrogenase mol 49.1 1.3E+02 0.0028 23.6 7.6 80 62-147 213-294 (456)
249 PRK08883 ribulose-phosphate 3- 48.5 91 0.002 21.8 6.4 42 61-102 154-196 (220)
250 PRK00048 dihydrodipicolinate r 48.5 18 0.00039 25.8 2.5 41 87-127 53-93 (257)
251 CHL00076 chlB photochlorophyll 48.5 1.3E+02 0.0028 24.1 7.3 82 60-147 181-264 (513)
252 cd05565 PTS_IIB_lactose PTS_II 48.4 59 0.0013 19.6 4.6 63 60-126 16-80 (99)
253 PRK08223 hypothetical protein; 47.9 97 0.0021 22.7 6.1 66 64-129 86-155 (287)
254 PF13407 Peripla_BP_4: Peripla 47.7 92 0.002 21.5 8.8 68 60-127 16-89 (257)
255 cd04300 GT1_Glycogen_Phosphory 47.6 17 0.00037 30.5 2.4 60 76-135 610-671 (797)
256 PRK14852 hypothetical protein; 47.4 1.7E+02 0.0036 25.7 8.0 68 63-130 390-461 (989)
257 PF07085 DRTGG: DRTGG domain; 47.4 26 0.00057 21.0 2.8 53 75-127 41-94 (105)
258 COG0519 GuaA GMP synthase, PP- 45.7 17 0.00036 26.5 1.9 67 59-126 169-249 (315)
259 PRK00257 erythronate-4-phospha 45.5 1.3E+02 0.0027 23.2 6.6 77 50-128 117-210 (381)
260 TIGR02014 BchZ chlorophyllide 45.0 43 0.00093 26.4 4.2 79 59-147 169-248 (468)
261 COG1736 DPH2 Diphthamide synth 44.6 65 0.0014 24.4 4.8 64 58-125 253-316 (347)
262 PRK06436 glycerate dehydrogena 44.3 1.3E+02 0.0028 22.2 6.4 90 49-143 122-224 (303)
263 PRK08057 cobalt-precorrin-6x r 43.7 1.2E+02 0.0026 21.7 6.8 69 77-145 171-246 (248)
264 PF01408 GFO_IDH_MocA: Oxidore 43.6 22 0.00049 21.5 2.1 39 88-126 54-94 (120)
265 PLN02306 hydroxypyruvate reduc 43.3 97 0.0021 23.8 5.7 42 87-128 229-275 (386)
266 PRK12480 D-lactate dehydrogena 43.0 95 0.0021 23.2 5.6 86 53-143 150-249 (330)
267 cd01016 TroA Metal binding pro 41.9 91 0.002 22.5 5.2 40 5-48 4-44 (276)
268 COG0673 MviM Predicted dehydro 41.8 73 0.0016 23.3 4.9 55 63-125 42-98 (342)
269 cd01080 NAD_bind_m-THF_DH_Cycl 41.8 1E+02 0.0022 20.5 5.4 53 49-104 44-97 (168)
270 COG1154 Dxs Deoxyxylulose-5-ph 41.6 1.7E+02 0.0036 24.1 6.8 97 49-147 501-623 (627)
271 cd01145 TroA_c Periplasmic bin 41.2 61 0.0013 22.1 4.1 40 5-48 5-45 (203)
272 cd01408 SIRT1 SIRT1: Eukaryoti 41.1 1.3E+02 0.0027 21.3 6.4 55 74-128 151-211 (235)
273 PRK09545 znuA high-affinity zi 40.8 73 0.0016 23.5 4.7 63 5-71 27-95 (311)
274 PRK08328 hypothetical protein; 40.7 1.3E+02 0.0027 21.1 7.5 66 66-132 89-157 (231)
275 COG1618 Predicted nucleotide k 40.6 37 0.0008 22.8 2.8 38 88-125 94-137 (179)
276 COG2179 Predicted hydrolase of 40.0 72 0.0016 21.4 4.0 73 15-87 50-123 (175)
277 COG3473 Maleate cis-trans isom 39.7 78 0.0017 22.2 4.3 36 94-129 179-215 (238)
278 cd01017 AdcA Metal binding pro 39.0 94 0.002 22.4 5.0 40 5-48 6-46 (282)
279 PRK13302 putative L-aspartate 38.6 30 0.00066 24.9 2.4 41 88-128 61-101 (271)
280 TIGR01361 DAHP_synth_Bsub phos 38.5 1.5E+02 0.0032 21.3 7.4 64 59-126 76-140 (260)
281 TIGR03837 efp_adjacent_2 conse 38.3 60 0.0013 24.7 3.9 48 76-128 243-290 (371)
282 PF14359 DUF4406: Domain of un 38.2 86 0.0019 18.5 3.9 33 90-122 55-90 (92)
283 TIGR00036 dapB dihydrodipicoli 38.2 29 0.00063 24.9 2.2 35 93-127 67-101 (266)
284 cd01972 Nitrogenase_VnfE_like 38.0 1.2E+02 0.0027 23.4 5.7 62 61-125 181-244 (426)
285 TIGR01430 aden_deam adenosine 37.2 1.7E+02 0.0036 21.5 7.7 43 86-128 223-275 (324)
286 TIGR02356 adenyl_thiF thiazole 37.2 1.3E+02 0.0029 20.4 7.0 65 64-128 80-146 (202)
287 TIGR02015 BchY chlorophyllide 36.9 2E+02 0.0044 22.3 7.8 82 61-150 179-262 (422)
288 cd06295 PBP1_CelR Ligand bindi 36.3 1.5E+02 0.0032 20.7 7.3 66 60-126 28-95 (275)
289 PRK13304 L-aspartate dehydroge 36.0 35 0.00075 24.5 2.3 41 88-128 55-95 (265)
290 cd01137 PsaA Metal binding pro 35.9 1.1E+02 0.0024 22.2 4.9 40 5-48 20-60 (287)
291 PF00205 TPP_enzyme_M: Thiamin 35.7 95 0.002 19.4 4.1 41 60-100 27-83 (137)
292 COG1628 Endonuclease V homolog 35.7 1.4E+02 0.0031 20.3 5.2 46 104-155 80-129 (185)
293 cd01019 ZnuA Zinc binding prot 35.6 1E+02 0.0022 22.4 4.7 41 5-48 6-46 (286)
294 PRK05299 rpsB 30S ribosomal pr 35.3 1.3E+02 0.0029 21.6 5.2 40 95-135 158-198 (258)
295 PRK15005 universal stress prot 35.0 1.1E+02 0.0024 18.9 6.5 63 61-123 69-142 (144)
296 PRK07574 formate dehydrogenase 35.0 2.1E+02 0.0045 22.0 6.4 75 53-129 196-288 (385)
297 PF01866 Diphthamide_syn: Puta 34.9 26 0.00056 25.8 1.6 64 57-124 224-287 (307)
298 TIGR02536 eut_hyp ethanolamine 34.7 68 0.0015 22.3 3.5 37 91-127 50-99 (207)
299 COG2247 LytB Putative cell wal 34.7 1.3E+02 0.0028 22.6 5.0 15 4-18 30-44 (337)
300 PRK14851 hypothetical protein; 34.5 2.8E+02 0.006 23.3 8.1 64 63-126 101-168 (679)
301 cd01492 Aos1_SUMO Ubiquitin ac 34.5 1.5E+02 0.0032 20.2 6.0 69 63-132 79-149 (197)
302 COG0757 AroQ 3-dehydroquinate 34.4 1.3E+02 0.0029 19.5 6.6 87 32-124 4-98 (146)
303 cd01981 Pchlide_reductase_B Pc 34.4 1.1E+02 0.0025 23.6 5.0 63 59-124 179-243 (430)
304 PF13689 DUF4154: Domain of un 34.2 52 0.0011 21.1 2.7 70 49-123 27-96 (145)
305 PRK14057 epimerase; Provisiona 34.0 1.8E+02 0.0039 21.0 5.5 49 61-109 112-169 (254)
306 PF04577 DUF563: Protein of un 33.9 1.3E+02 0.0028 20.1 4.8 38 63-102 123-160 (206)
307 COG4394 Uncharacterized protei 33.5 1.1E+02 0.0023 22.8 4.3 45 76-125 239-283 (370)
308 PRK12346 transaldolase A; Prov 33.4 1.4E+02 0.0031 22.3 5.1 95 61-156 205-312 (316)
309 PF00834 Ribul_P_3_epim: Ribul 33.2 1.6E+02 0.0035 20.2 6.6 44 59-102 151-195 (201)
310 PRK13398 3-deoxy-7-phosphohept 33.0 1.9E+02 0.0041 20.9 7.4 65 58-126 77-142 (266)
311 COG1887 TagB Putative glycosyl 32.9 64 0.0014 24.7 3.4 57 86-147 278-352 (388)
312 PRK14138 NAD-dependent deacety 32.7 1.8E+02 0.0039 20.6 6.4 53 74-126 154-213 (244)
313 cd01971 Nitrogenase_VnfN_like 32.2 1.4E+02 0.003 23.1 5.2 62 61-125 175-238 (427)
314 cd01976 Nitrogenase_MoFe_alpha 32.2 2.4E+02 0.0052 21.9 6.8 80 62-147 188-269 (421)
315 TIGR02355 moeB molybdopterin s 31.9 1.9E+02 0.004 20.5 6.6 62 64-125 83-146 (240)
316 KOG3111 D-ribulose-5-phosphate 31.9 1.8E+02 0.0038 20.2 5.1 55 61-115 101-156 (224)
317 cd01977 Nitrogenase_VFe_alpha 31.7 2.4E+02 0.0052 21.7 7.7 80 62-147 178-259 (415)
318 COG1869 RbsD ABC-type ribose t 31.7 1.2E+02 0.0026 19.4 3.9 52 60-114 80-131 (135)
319 PRK13581 D-3-phosphoglycerate 31.3 2.8E+02 0.006 22.3 7.0 85 54-143 145-245 (526)
320 cd05564 PTS_IIB_chitobiose_lic 31.1 1.2E+02 0.0026 17.9 4.7 65 60-128 15-81 (96)
321 PF00682 HMGL-like: HMGL-like 30.7 1.9E+02 0.004 20.1 7.5 85 58-143 136-234 (237)
322 PF12996 DUF3880: DUF based on 30.5 1E+02 0.0022 17.5 3.3 39 2-46 19-57 (79)
323 PF00899 ThiF: ThiF family; I 30.4 1.4E+02 0.0031 18.6 4.4 68 62-129 59-128 (135)
324 cd07939 DRE_TIM_NifV Streptomy 30.2 2E+02 0.0044 20.4 10.2 86 59-145 139-237 (259)
325 PRK08374 homoserine dehydrogen 30.2 43 0.00094 25.0 2.1 42 89-130 84-127 (336)
326 PRK06719 precorrin-2 dehydroge 30.1 1.6E+02 0.0035 19.2 8.1 43 92-134 68-110 (157)
327 PRK13397 3-deoxy-7-phosphohept 29.8 2.1E+02 0.0046 20.5 7.5 64 59-126 66-130 (250)
328 cd03146 GAT1_Peptidase_E Type 29.7 1.9E+02 0.0041 19.9 5.3 66 59-126 46-122 (212)
329 CHL00067 rps2 ribosomal protei 29.5 1.9E+02 0.0042 20.4 5.1 26 109-134 175-201 (230)
330 PRK14057 epimerase; Provisiona 29.5 2.2E+02 0.0048 20.6 6.2 43 61-103 180-223 (254)
331 cd01020 TroA_b Metal binding p 29.5 83 0.0018 22.5 3.4 40 5-48 5-46 (264)
332 PRK15408 autoinducer 2-binding 29.4 2.2E+02 0.0047 21.2 5.7 65 61-127 42-114 (336)
333 PRK09722 allulose-6-phosphate 29.4 2.1E+02 0.0045 20.2 6.7 42 61-102 156-198 (229)
334 TIGR01862 N2-ase-Ialpha nitrog 29.2 2.8E+02 0.0061 21.7 7.8 81 61-147 206-288 (443)
335 PF09152 DUF1937: Domain of un 29.2 60 0.0013 20.3 2.2 35 89-123 74-113 (116)
336 PRK04020 rps2P 30S ribosomal p 28.8 2E+02 0.0044 19.9 5.0 28 108-135 127-155 (204)
337 cd00316 Oxidoreductase_nitroge 28.7 1.7E+02 0.0036 22.1 5.1 63 60-125 167-231 (399)
338 PRK08745 ribulose-phosphate 3- 28.6 2.1E+02 0.0046 20.1 6.9 43 61-103 158-201 (223)
339 PRK12595 bifunctional 3-deoxy- 28.3 2.7E+02 0.0058 21.2 7.6 64 59-126 169-233 (360)
340 TIGR01327 PGDH D-3-phosphoglyc 28.2 3.2E+02 0.0069 22.0 6.7 74 53-128 142-232 (525)
341 TIGR01284 alt_nitrog_alph nitr 27.5 3.1E+02 0.0067 21.6 6.7 81 61-147 214-296 (457)
342 PF01451 LMWPc: Low molecular 27.4 1.4E+02 0.003 18.7 3.8 21 2-22 77-97 (138)
343 COG1879 RbsB ABC-type sugar tr 27.3 2.5E+02 0.0053 20.4 6.8 69 61-129 52-127 (322)
344 cd00757 ThiF_MoeB_HesA_family 27.2 2.2E+02 0.0047 19.8 6.6 66 63-128 79-146 (228)
345 TIGR02090 LEU1_arch isopropylm 27.2 2.8E+02 0.0061 21.0 9.9 87 58-145 140-239 (363)
346 PF03435 Saccharop_dh: Sacchar 27.1 1.8E+02 0.0039 22.0 5.0 44 80-124 53-97 (386)
347 cd01982 Chlide_reductase_Z Chl 27.0 1.8E+02 0.004 22.5 5.0 79 59-147 172-251 (412)
348 TIGR00853 pts-lac PTS system, 27.0 1.4E+02 0.0031 17.6 4.3 63 60-126 19-83 (95)
349 PRK11858 aksA trans-homoaconit 26.9 2.9E+02 0.0063 21.1 9.7 86 58-144 144-242 (378)
350 PF02571 CbiJ: Precorrin-6x re 26.7 2.4E+02 0.0053 20.1 5.7 54 77-130 175-231 (249)
351 PF00318 Ribosomal_S2: Ribosom 26.5 2.2E+02 0.0048 19.6 5.3 39 95-134 144-183 (211)
352 PF08937 DUF1863: MTH538 TIR-l 26.4 1.4E+02 0.0031 18.6 3.7 45 87-131 63-112 (130)
353 PRK12311 rpsB 30S ribosomal pr 26.2 2.3E+02 0.0051 21.3 5.2 29 107-135 164-193 (326)
354 PF03568 Peptidase_C50: Peptid 26.1 1.7E+02 0.0036 22.4 4.6 19 109-127 358-376 (383)
355 PF00834 Ribul_P_3_epim: Ribul 26.1 54 0.0012 22.5 1.9 48 61-108 94-141 (201)
356 PRK08605 D-lactate dehydrogena 25.9 2.8E+02 0.0061 20.7 7.5 74 54-129 151-240 (332)
357 cd03145 GAT1_cyanophycinase Ty 25.7 2.3E+02 0.005 19.6 5.8 66 60-126 45-125 (217)
358 TIGR03358 VI_chp_5 type VI sec 25.7 1E+02 0.0022 20.5 2.9 23 136-158 133-155 (159)
359 PRK13181 hisH imidazole glycer 25.5 2.2E+02 0.0048 19.2 6.6 59 61-127 12-81 (199)
360 PF03641 Lysine_decarbox: Poss 25.4 1E+02 0.0022 19.5 2.9 42 86-129 45-95 (133)
361 PRK05690 molybdopterin biosynt 25.0 2.6E+02 0.0055 19.8 6.8 61 65-125 92-154 (245)
362 PF05591 DUF770: Protein of un 25.0 98 0.0021 20.5 2.8 23 136-158 132-154 (157)
363 TIGR02853 spore_dpaA dipicolin 25.0 2.8E+02 0.006 20.2 6.2 72 49-122 151-237 (287)
364 COG3340 PepE Peptidase E [Amin 24.7 2.6E+02 0.0056 19.8 7.7 71 58-128 48-128 (224)
365 cd01425 RPS2 Ribosomal protein 24.6 1.1E+02 0.0023 20.9 3.1 41 93-134 126-167 (193)
366 COG0373 HemA Glutamyl-tRNA red 24.5 3.5E+02 0.0075 21.2 9.0 80 52-132 181-279 (414)
367 PF07685 GATase_3: CobB/CobQ-l 24.4 34 0.00074 22.3 0.6 34 92-125 5-49 (158)
368 COG0014 ProA Gamma-glutamyl ph 24.4 3.5E+02 0.0075 21.1 7.0 72 60-135 158-234 (417)
369 PRK11797 D-ribose pyranase; Pr 24.3 36 0.00078 22.0 0.7 54 59-113 79-134 (139)
370 KOG1494 NAD-dependent malate d 24.2 96 0.0021 22.9 2.8 29 75-103 77-105 (345)
371 smart00559 Ku78 Ku70 and Ku80 23.9 1.6E+02 0.0034 18.8 3.6 42 74-115 35-82 (140)
372 cd01968 Nitrogenase_NifE_I Nit 23.9 3.4E+02 0.0074 20.9 7.8 81 61-147 173-255 (410)
373 KOG0069 Glyoxylate/hydroxypyru 23.7 3.3E+02 0.0071 20.6 6.0 85 54-143 167-268 (336)
374 cd06324 PBP1_ABC_sugar_binding 23.1 2.9E+02 0.0063 19.8 7.5 66 60-127 18-91 (305)
375 TIGR01012 Sa_S2_E_A ribosomal 23.1 1.9E+02 0.0041 19.9 4.0 28 107-134 120-148 (196)
376 COG3181 Uncharacterized protei 23.1 3.2E+02 0.0069 20.5 5.4 23 136-158 263-285 (319)
377 PF05025 RbsD_FucU: RbsD / Fuc 22.9 74 0.0016 20.6 1.9 32 81-112 105-136 (142)
378 KOG4388 Hormone-sensitive lipa 22.8 1.3E+02 0.0028 24.8 3.5 44 114-157 423-469 (880)
379 cd01485 E1-1_like Ubiquitin ac 22.8 2.6E+02 0.0055 19.0 6.5 70 63-132 79-152 (198)
380 cd01018 ZntC Metal binding pro 22.6 1.5E+02 0.0032 21.2 3.7 40 5-48 5-45 (266)
381 cd07940 DRE_TIM_IPMS 2-isoprop 22.5 3E+02 0.0065 19.7 9.4 87 58-145 142-244 (268)
382 TIGR01282 nifD nitrogenase mol 22.4 4E+02 0.0086 21.1 6.8 80 62-147 223-304 (466)
383 PRK11391 etp phosphotyrosine-p 22.3 2.2E+02 0.0048 18.2 5.1 23 2-24 76-98 (144)
384 cd00788 KU70 Ku-core domain, K 22.2 2.2E+02 0.0048 20.7 4.5 44 72-115 92-141 (287)
385 PF03228 Adeno_VII: Adenoviral 22.2 62 0.0013 20.1 1.4 16 96-111 2-17 (117)
386 PF13263 PHP_C: PHP-associated 22.1 72 0.0016 16.7 1.5 23 113-135 10-32 (56)
387 PRK15420 fucU L-fucose mutarot 22.1 42 0.00091 21.7 0.7 51 60-113 85-135 (140)
388 cd04726 KGPDC_HPS 3-Keto-L-gul 21.7 2.6E+02 0.0056 18.7 6.8 41 61-103 147-188 (202)
389 cd01965 Nitrogenase_MoFe_beta_ 21.7 3.9E+02 0.0084 20.7 6.3 63 60-125 170-252 (428)
390 cd01413 SIR2_Af2 SIR2_Af2: Arc 21.4 2.9E+02 0.0063 19.2 6.1 54 74-127 147-207 (222)
391 cd01486 Apg7 Apg7 is an E1-lik 21.3 3.6E+02 0.0077 20.1 5.3 42 84-125 98-140 (307)
392 PRK05583 ribosomal protein L7A 21.3 2.1E+02 0.0045 17.4 3.7 52 60-115 47-98 (104)
393 TIGR01011 rpsB_bact ribosomal 21.2 3E+02 0.0066 19.3 5.2 40 95-135 156-196 (225)
394 cd07575 Xc-1258_like Xanthomon 21.2 2.5E+02 0.0055 19.6 4.6 43 86-128 146-194 (252)
395 PTZ00254 40S ribosomal protein 21.0 3.3E+02 0.0071 19.6 5.5 29 107-135 130-159 (249)
396 PRK08306 dipicolinate synthase 21.0 3.4E+02 0.0074 19.8 6.1 72 49-122 152-238 (296)
397 PRK07877 hypothetical protein; 20.9 5.3E+02 0.011 21.9 6.8 60 64-125 165-228 (722)
398 PRK10076 pyruvate formate lyas 20.8 3E+02 0.0065 19.1 5.2 42 59-100 54-95 (213)
399 KOG4166 Thiamine pyrophosphate 20.7 2.5E+02 0.0054 22.3 4.5 11 64-74 97-107 (675)
400 COG4213 XylF ABC-type xylose t 20.7 3.5E+02 0.0075 20.4 5.1 64 63-126 46-114 (341)
401 smart00672 CAP10 Putative lipo 20.6 95 0.0021 22.3 2.3 48 111-159 161-225 (256)
402 PRK05282 (alpha)-aspartyl dipe 20.5 3.2E+02 0.007 19.3 5.7 66 59-128 48-123 (233)
403 PF12119 DUF3581: Protein of u 20.5 78 0.0017 22.0 1.7 53 61-122 111-163 (218)
404 COG5155 ESP1 Separase, a prote 20.5 2E+02 0.0044 25.5 4.3 20 110-129 1540-1559(1622)
405 TIGR02317 prpB methylisocitrat 20.4 1.9E+02 0.0041 21.2 3.8 37 86-124 3-39 (285)
406 COG4087 Soluble P-type ATPase 20.4 2.6E+02 0.0056 18.2 4.0 38 75-114 94-131 (152)
407 COG0289 DapB Dihydrodipicolina 20.1 1.3E+02 0.0028 21.8 2.8 48 88-135 63-110 (266)
408 cd07571 ALP_N-acyl_transferase 20.0 3.4E+02 0.0073 19.4 5.2 44 92-135 174-227 (270)
No 1
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.97 E-value=1.6e-29 Score=188.64 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=134.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----C----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----C---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----~---------------------------- 48 (159)
||.++++|+..++.+.+. +....+ +.+++||+|.+.|.+... .
T Consensus 175 ad~vv~~S~~~~~~l~~~-g~~~~k---i~vi~nGvd~~~f~~~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~ 250 (406)
T PRK15427 175 GDLMLPISDLWAGRLQKM-GCPPEK---IAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQ 250 (406)
T ss_pred CCEEEECCHHHHHHHHHc-CCCHHH---EEEcCCCCCHHHcCCCccccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhh
Confidence 789999999999998764 443444 779999999988754321 1
Q ss_pred --cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC------CCCccHHHHhhhcCCc
Q 036860 49 --GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD------EHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~------e~~g~~~lEama~G~P 120 (159)
.+...+.|+|++.+.++++++++++.++|.|+|+++++++.++|+.||++++||.. ||+|++++|||+||+|
T Consensus 251 ~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~P 330 (406)
T PRK15427 251 GVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIP 330 (406)
T ss_pred CCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCC
Confidence 23455779999999999999999999999999999999999999999999999974 9999999999999999
Q ss_pred EEEeCCCCCceeecc------------HHHHHHHHHHhc-CHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN------------EEFSLSMAKLIQ-EPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~------------~~l~~~i~~l~~-~~~~~~~~~~~a 159 (159)
||+|+.+|..|++.+ ++++++|.++++ |++++++|+++|
T Consensus 331 VI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~a 382 (406)
T PRK15427 331 VVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRA 382 (406)
T ss_pred EEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999976 899999999999 999999998764
No 2
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=5e-27 Score=175.45 Aligned_cols=156 Identities=24% Similarity=0.226 Sum_probs=132.9
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC---C----------------------------c
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS---C----------------------------G 49 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~---~----------------------------~ 49 (159)
.+|.++++|+..++.+.+.++....+ +.++++|++...+.+... . +
T Consensus 183 ~~d~ii~~S~~~~~~l~~~~~~~~~k---i~vi~~gv~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~ 259 (407)
T cd04946 183 SLDAVFPCSEQGRNYLQKRYPAYKEK---IKVSYLGVSDPGIISKPSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKAR 259 (407)
T ss_pred cCCEEEECCHHHHHHHHHHCCCcccc---EEEEECCcccccccCCCCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhC
Confidence 37999999999999999888765554 779999998765543311 1 1
Q ss_pred ----ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHh--CcEEEeCCCCCCCccHHHHhhhcCCcEEE
Q 036860 50 ----CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFE--CLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123 (159)
Q Consensus 50 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~--a~~~i~~s~~e~~g~~~lEama~G~Pvi~ 123 (159)
....+.|+|+....++++++..+..++|.|+|+++++++.++|+. +|++++||..||+|++++|||++|+|||+
T Consensus 260 p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa 339 (407)
T cd04946 260 PSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA 339 (407)
T ss_pred CCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe
Confidence 112346888888999999987777788999999999999999976 78899999999999999999999999999
Q ss_pred eCCCCCceeecc-------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 124 CDSGGPVETIKN-------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 124 ~~~~~~~e~i~~-------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|+.||..|++.+ ++++++|.++++|++++++|+++|
T Consensus 340 s~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~a 388 (407)
T cd04946 340 TNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKA 388 (407)
T ss_pred CCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999998887 789999999999999999999875
No 3
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.95 E-value=2e-26 Score=169.51 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=131.7
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------- 48 (159)
||.++++|++.++.+.+. +..+.+ +.+++||+|.+.+.+....
T Consensus 143 ~d~ii~~s~~~~~~~~~~-~~~~~~---i~vi~~g~d~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 218 (367)
T cd05844 143 AALFIAVSQFIRDRLLAL-GFPPEK---VHVHPIGVDTAKFTPATPARRPPRILFVGRFVEKKGPLLLLEAFARLARRVP 218 (367)
T ss_pred cCEEEECCHHHHHHHHHc-CCCHHH---eEEecCCCCHHhcCCCCCCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCC
Confidence 799999999999998764 333333 7799999998877643211
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC------CCCCccHHHHhhhcCCcEE
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK------DEHFGIVPLEAMAAYKPVS 122 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~------~e~~g~~~lEama~G~Pvi 122 (159)
.+...+.|++++.++++++++++++.++|+|+|+++++++..+|+.||++++||. .|++|++++|||+||+|||
T Consensus 219 ~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI 298 (367)
T cd05844 219 EVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVV 298 (367)
T ss_pred CeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEE
Confidence 3445567888888999999999888899999999999999999999999999997 4999999999999999999
Q ss_pred EeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 123 ACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 123 ~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+++.++..|++.+ ++++++|.++++|++.+++|+++|
T Consensus 299 ~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a 347 (367)
T cd05844 299 ATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAG 347 (367)
T ss_pred EeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999998765 799999999999999888887653
No 4
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.95 E-value=1.8e-26 Score=172.20 Aligned_cols=155 Identities=22% Similarity=0.320 Sum_probs=130.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-------------C--------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-------------C-------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-------------~-------------------- 48 (159)
||.++++|+..++.+.+.++....+ +.+|+||+|.+.|.+... .
T Consensus 164 ~d~vi~~s~~~~~~~~~~~~~~~~k---i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a 240 (405)
T TIGR03449 164 ADRLIANTDEEARDLVRHYDADPDR---IDVVAPGADLERFRPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRA 240 (405)
T ss_pred cCeEEECCHHHHHHHHHHcCCChhh---EEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHH
Confidence 7999999999888887766644444 779999999877654321 1
Q ss_pred ---------c--cccccccc----H-HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHH
Q 036860 49 ---------G--CDKLLREN----V-EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPL 112 (159)
Q Consensus 49 ---------~--~~~~i~~~----~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~l 112 (159)
. +...+.|. + +..+.++++++++++.++|.|+|+++++++.++|+.||++++||..|+||++++
T Consensus 241 ~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~l 320 (405)
T TIGR03449 241 VAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAM 320 (405)
T ss_pred HHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHH
Confidence 1 22344553 4 667889999999999889999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 113 EAMAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|||++|+|||+++.++..|++.+ ++++++|.+++++++.+++|+++|
T Consensus 321 EAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~ 379 (405)
T TIGR03449 321 EAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAA 379 (405)
T ss_pred HHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999988865 899999999999999888887653
No 5
>PLN02949 transferase, transferring glycosyl groups
Probab=99.95 E-value=4.2e-26 Score=172.11 Aligned_cols=155 Identities=22% Similarity=0.282 Sum_probs=125.0
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC-----CC-C-------------------c------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP-----HS-C-------------------G------ 49 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~-----~~-~-------------------~------ 49 (159)
+||.++++|+++++.+++.++. +.+ +.+++||+|...+... .. . .
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~-~~~---i~vvyp~vd~~~~~~~~~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~ 295 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRI-PER---IKRVYPPCDTSGLQALPLERSEDPPYIISVAQFRPEKAHALQLEAFALALE 295 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCC-CCC---eEEEcCCCCHHHcccCCccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHH
Confidence 4899999999999999887654 222 6799999987544211 11 1 0
Q ss_pred --------cccccccc------HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh
Q 036860 50 --------CDKLLREN------VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM 115 (159)
Q Consensus 50 --------~~~~i~~~------~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam 115 (159)
....+.|+ .++.+++++++++++++++|.|+|+++.+++.++|++|+++++|+.+|+||++++|||
T Consensus 296 ~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAM 375 (463)
T PLN02949 296 KLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYM 375 (463)
T ss_pred hccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHH
Confidence 12334454 3456789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEeCCCCCc-eeecc-------------HHHHHHHHHHhc-CHHHHHHhhhcC
Q 036860 116 AAYKPVSACDSGGPV-ETIKN-------------EEFSLSMAKLIQ-EPQMAKNMGENA 159 (159)
Q Consensus 116 a~G~Pvi~~~~~~~~-e~i~~-------------~~l~~~i~~l~~-~~~~~~~~~~~a 159 (159)
++|+|||+++.||.. +++.+ ++++++|.++++ +++++++|+++|
T Consensus 376 A~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~a 434 (463)
T PLN02949 376 AAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAA 434 (463)
T ss_pred HcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999998864 55431 899999999998 678888888764
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.95 E-value=1.5e-26 Score=172.38 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=125.6
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----C----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----C---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----~---------------------------- 48 (159)
+|.++++|+..++.+....+..+.+ +.++|||+|.+.|.+... .
T Consensus 145 ~d~ii~~s~~~~~~~~~~~~~~~~k---~~vi~ngvd~~~f~~~~~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~ 221 (398)
T cd03796 145 VDHVICVSHTSKENTVLRASLDPER---VSVIPNAVDSSDFTPDPSKRDNDKITIVVISRLVYRKGIDLLVGIIPEICKK 221 (398)
T ss_pred CCEEEEecHhHhhHHHHHhCCChhh---EEEEcCccCHHHcCCCcccCCCCceEEEEEeccchhcCHHHHHHHHHHHHhh
Confidence 7999999999987654433332333 779999999887764322 1
Q ss_pred --cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC
Q 036860 49 --GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 49 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
.+...+.|+++..+.+++++.+.++.++|.|+|+++++++..+|+.||++++||..|+||++++|||+||+|||+++.
T Consensus 222 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~ 301 (398)
T cd03796 222 HPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRV 301 (398)
T ss_pred CCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCC
Confidence 233446688888889999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecc----------HHHHHHHHHHhcCHHHHHHh
Q 036860 127 GGPVETIKN----------EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 127 ~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~ 155 (159)
++..|++.+ ++++++|.++++++.+...+
T Consensus 302 gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 340 (398)
T cd03796 302 GGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHD 340 (398)
T ss_pred CCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhH
Confidence 999999987 78999999999876554333
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=2e-26 Score=170.31 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=129.6
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC--------------CC-------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH--------------SC------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~--------------~~------------------- 48 (159)
+|.++++|+..++.+.+.++....+ +.+++||+|.+.|.+.. ..
T Consensus 137 ~~~~i~vs~~~~~~~~~~~~~~~~~---~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 137 IHHYVAVSRDLEDWLRGPVKVPPAK---IHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred CCeEEEeCHHHHHHHHHhcCCChhh---EEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHH
Confidence 6899999999999998766544443 77999999988765431 11
Q ss_pred ---------------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 49 ---------------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 49 ---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
++...+.|+|+..+.+++.++++++.+++.|+|.. +++.++|+.||++++||..||+|++++|
T Consensus 214 ~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lE 291 (374)
T TIGR03088 214 RAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILE 291 (374)
T ss_pred HHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHH
Confidence 12345668888889999999999998899999975 5679999999999999999999999999
Q ss_pred hhhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 114 AMAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 114 ama~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+||+|||+|+.++..|++.+ ++++++|.+++++++.+++|+++|
T Consensus 292 Ama~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a 349 (374)
T TIGR03088 292 AMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAG 349 (374)
T ss_pred HHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999999999866 899999999999999888887653
No 8
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.94 E-value=2.9e-26 Score=173.97 Aligned_cols=152 Identities=23% Similarity=0.271 Sum_probs=127.2
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC--------------CC------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH--------------SC------------------ 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~--------------~~------------------ 48 (159)
.||.++++|+..++.+.+.......+ +.+++||+|.+.|.+.. ..
T Consensus 205 ~ad~ii~~S~~~~~~l~~~~~~~~~k---v~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 205 AADLTLVTSPALGKELEAAGVTAANR---IRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred hCCEEEECCHHHHHHHHHcCCCCcCe---EEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHH
Confidence 37999999999999998753222233 77999999988775421 11
Q ss_pred --------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc
Q 036860 49 --------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P 120 (159)
+....+.|+|++.+.++++++. .+|+|+|+++++++..+|+.||++++||..|++|++++|||+||+|
T Consensus 282 i~a~~~~~~~~l~ivG~G~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~P 357 (465)
T PLN02871 282 KRVMERLPGARLAFVGDGPYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVP 357 (465)
T ss_pred HHHHHhCCCcEEEEEeCChHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCC
Confidence 3445567899988888888764 3699999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeecc---------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN---------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~---------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+++.+|..|++.+ ++++++|.++++|++.+++|+++|
T Consensus 358 VI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 411 (465)
T PLN02871 358 VVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAA 411 (465)
T ss_pred EEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999887642 899999999999999999998764
No 9
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.94 E-value=2.8e-26 Score=170.91 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=118.8
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------- 48 (159)
||.+|++|++.++.+.+.++ .+ +.+|+||+|.+.|.+....
T Consensus 157 ad~vi~~s~~~~~~~~~~~~---~k---i~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~l 230 (396)
T cd03818 157 ADAGVSPTRWQRSTFPAELR---SR---ISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVF 230 (396)
T ss_pred CCEEECCCHHHHhhCcHhhc---cc---eEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHH
Confidence 79999999999998876543 23 7799999998877653210
Q ss_pred ------------cccccccccHH------------HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC
Q 036860 49 ------------GCDKLLRENVE------------YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD 104 (159)
Q Consensus 49 ------------~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~ 104 (159)
.+...+.|++. +...+.+........++|+|+|+++++++..+|+.||++++||..
T Consensus 231 l~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~ 310 (396)
T cd03818 231 MRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYP 310 (396)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcc
Confidence 11122334311 222222222211124689999999999999999999999999999
Q ss_pred CCCccHHHHhhhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 105 EHFGIVPLEAMAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 105 e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|++|++++||||||+|||+|+.++..|++.+ ++++++|.++++|++.+++|+++|
T Consensus 311 e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~a 377 (396)
T cd03818 311 FVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAA 377 (396)
T ss_pred cccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999999999999999999876 999999999999999999998764
No 10
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.94 E-value=6.7e-26 Score=168.22 Aligned_cols=157 Identities=44% Similarity=0.686 Sum_probs=130.1
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----------C---------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----------C--------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----------~--------------------- 48 (159)
.||.++++|+++++.+.+.++....++ +.+++||+|.+.+.+... .
T Consensus 154 ~ad~ii~~s~~~~~~~~~~~~~~~~~~--~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~ 231 (392)
T cd03805 154 MADKIVVNSNFTASVFKKTFPSLAKNP--REVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIE 231 (392)
T ss_pred CceEEEEcChhHHHHHHHHhcccccCC--cceeCCCcCHHHcCcccccccccccccCCCceEEEEEeeecccCChHHHHH
Confidence 379999999999999988776554442 349999999887754211 0
Q ss_pred -------c------ccccccccH--------HHHHHHHHHHHH-cCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCC
Q 036860 49 -------G------CDKLLRENV--------EYLEELKSLAER-NGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEH 106 (159)
Q Consensus 49 -------~------~~~~i~~~~--------~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~ 106 (159)
. +...+.|++ .+.+++++++++ .++.++|.|+|+++++++..+|+.||++++||..|+
T Consensus 232 a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~ 311 (392)
T cd03805 232 AFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEH 311 (392)
T ss_pred HHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCC
Confidence 1 112344544 345788888988 888899999999999999999999999999999999
Q ss_pred CccHHHHhhhcCCcEEEeCCCCCceeecc-----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 107 FGIVPLEAMAAYKPVSACDSGGPVETIKN-----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 107 ~g~~~lEama~G~Pvi~~~~~~~~e~i~~-----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||++++|||+||+|||+++.++..|++.+ ++++++|.+++++++.+++|+++|
T Consensus 312 ~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a 375 (392)
T cd03805 312 FGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAG 375 (392)
T ss_pred CCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999999999999999999998877 899999999999999888888764
No 11
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.94 E-value=7.8e-26 Score=169.50 Aligned_cols=153 Identities=27% Similarity=0.346 Sum_probs=124.3
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----C---------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----C--------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----~--------------------------- 48 (159)
.||.++++|+++++.+.+.++.. .+ +.+++||+|++.+.+... .
T Consensus 189 ~aD~ii~~S~~~~~~~~~~~~~~-~~---~~vi~~gvd~~~~~~~~~~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~ 264 (419)
T cd03806 189 FADVVMVNSTWTRNHIRSLWKRN-TK---PSIVYPPCDVEELLKLPLDEKTRENQILSIAQFRPEKNHPLQLRAFAKLLK 264 (419)
T ss_pred cCCEEEECCHHHHHHHHHHhCcC-CC---cEEEcCCCCHHHhcccccccccCCcEEEEEEeecCCCCHHHHHHHHHHHHH
Confidence 48999999999999998876532 22 679999999877653221 1
Q ss_pred ---c-----ccccccccH------HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh
Q 036860 49 ---G-----CDKLLRENV------EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA 114 (159)
Q Consensus 49 ---~-----~~~~i~~~~------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa 114 (159)
. ....+.|++ .+.++++++++++++.++|+|+|+++.+++..+|+.||++++|+..|+||++++||
T Consensus 265 ~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEA 344 (419)
T cd03806 265 RLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEY 344 (419)
T ss_pred hCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHH
Confidence 1 334455654 57788999999999989999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEeCCCCC-ceeec---c----------HHHHHHHHHHhcCHH-HHHHhhh
Q 036860 115 MAAYKPVSACDSGGP-VETIK---N----------EEFSLSMAKLIQEPQ-MAKNMGE 157 (159)
Q Consensus 115 ma~G~Pvi~~~~~~~-~e~i~---~----------~~l~~~i~~l~~~~~-~~~~~~~ 157 (159)
|+||+|||+++.+|. .+++. + ++++++|.+++++++ .++.+++
T Consensus 345 Ma~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~ 402 (419)
T cd03806 345 MAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRR 402 (419)
T ss_pred HHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998764 56775 3 999999999999654 4444443
No 12
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.94 E-value=3.8e-26 Score=168.23 Aligned_cols=147 Identities=22% Similarity=0.205 Sum_probs=122.6
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCcccccc-CCCC---C----------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFD-KPHS---C---------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~-~~~~---~---------------------------- 48 (159)
.||.++++|+.+++.+.+. +....+ +.+++||+|.+.+. +... .
T Consensus 133 ~~d~~i~~S~~~~~~~~~~-~~~~~k---i~vi~N~id~~~~~~~~~~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~ 208 (359)
T PRK09922 133 CADYHLAISSGIKEQMMAR-GISAQR---ISVIYNPVEIKTIIIPPPERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT 208 (359)
T ss_pred cCCEEEEcCHHHHHHHHHc-CCCHHH---EEEEcCCCCHHHccCCCcccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC
Confidence 4799999999999999764 433343 77999999965432 1111 1
Q ss_pred -cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCH--HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 49 -GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCST--TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 49 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.+...+.|+|+..+.+++.+++++++++|+|+|++++ +++.++|..+|++++||..||||++++||||||+|||+++
T Consensus 209 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~ 288 (359)
T PRK09922 209 GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSD 288 (359)
T ss_pred CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeC
Confidence 2334466888889999999999999899999999854 7889999999999999999999999999999999999999
Q ss_pred -CCCCceeecc------------HHHHHHHHHHhcCHHH
Q 036860 126 -SGGPVETIKN------------EEFSLSMAKLIQEPQM 151 (159)
Q Consensus 126 -~~~~~e~i~~------------~~l~~~i~~l~~~~~~ 151 (159)
.+|..|++.+ ++++++|.++++|++.
T Consensus 289 ~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 289 CMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred CCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 8999998875 9999999999998873
No 13
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.94 E-value=8.5e-26 Score=180.21 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----cEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----LCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
+...+.++++++++.++|.|+|+++.+++..+|+.| |+|++||.+|+||++++||||||+|||+|+.||..|++.+
T Consensus 533 ~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 533 VLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred HHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 346678889999999999999999999999999988 6999999999999999999999999999999999999875
Q ss_pred ------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 136 ------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 136 ------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
++|+++|.++++|++.+++|+++|
T Consensus 613 g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~g 648 (1050)
T TIGR02468 613 LDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNG 648 (1050)
T ss_pred CCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 899999999999999999998864
No 14
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.93 E-value=2.8e-25 Score=162.30 Aligned_cols=155 Identities=22% Similarity=0.307 Sum_probs=133.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC--C---C----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH--S---C---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~--~---~---------------------------- 48 (159)
+|.++++|+..++.+.+.++....+ +.+++||+|.+.+.+.. . .
T Consensus 131 ~~~vi~~s~~~~~~l~~~~~~~~~~---~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~ 207 (355)
T cd03799 131 ADFVVAISEYNRQQLIRLLGCDPDK---IHVVHCGVDLERFPPRPPPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDR 207 (355)
T ss_pred CCEEEECCHHHHHHHHHhcCCCccc---EEEEeCCcCHHHcCCccccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhc
Confidence 7999999999999998875443433 78999999988776653 1 1
Q ss_pred --cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC------CCCccHHHHhhhcCCc
Q 036860 49 --GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD------EHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~------e~~g~~~lEama~G~P 120 (159)
.+...+.|.++....+.+.+++.++.++|.|+|+++.+++..+|++||++++||.. |++|++++|||++|+|
T Consensus 208 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P 287 (355)
T cd03799 208 GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP 287 (355)
T ss_pred CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC
Confidence 23344567777888888999988888899999999999999999999999999998 9999999999999999
Q ss_pred EEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|+++.++..+++.+ ++++++|.+++++++.+++|+++|
T Consensus 288 vi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a 338 (355)
T cd03799 288 VISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAG 338 (355)
T ss_pred EEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999888876 899999999999999998888764
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.93 E-value=2.2e-25 Score=168.04 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----cEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc---
Q 036860 63 ELKSLAERNGMSDRVNFITSCSTTERNALLFEC----LCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN--- 135 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~--- 135 (159)
.+.+++++.++.++|.|+|+++.+++..+|+.| |++++||.+|+||++++|||+||+|||+|+.+|..|++.+
T Consensus 305 ~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~ 384 (439)
T TIGR02472 305 KVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRN 384 (439)
T ss_pred HHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCc
Confidence 455677888898999999999999999999987 9999999999999999999999999999999999999875
Q ss_pred ---------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 136 ---------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 136 ---------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
++++++|.++++|++.+++|+++|
T Consensus 385 G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 417 (439)
T TIGR02472 385 GLLVDVLDLEAIASALEDALSDSSQWQLWSRNG 417 (439)
T ss_pred EEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899999999999999999998764
No 16
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.93 E-value=1.5e-25 Score=164.18 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=126.6
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-------------C--------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-------------C-------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-------------~-------------------- 48 (159)
+|.++++|+...+.+.+.. ... ++.+++||+|...+.+... .
T Consensus 138 ~~~~i~~s~~~~~~~~~~~--~~~---~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~ 212 (358)
T cd03812 138 ATDYLACSEEAGKWLFGKV--KNK---KFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIE 212 (358)
T ss_pred CCEEEEcCHHHHHHHHhCC--Ccc---cEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHH
Confidence 7899999999988876541 222 3779999999876644311 1
Q ss_pred ----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 49 ----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 49 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
.+...+.|+++....+++.+++.++.++|.|+|+ .+++.++|+.||++++||..|++|++++|||++|
T Consensus 213 a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G 290 (358)
T cd03812 213 IFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASG 290 (358)
T ss_pred HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhC
Confidence 3344466888888999999999999999999999 4678999999999999999999999999999999
Q ss_pred CcEEEeCCCCCceeecc-----------HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 119 KPVSACDSGGPVETIKN-----------EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~-----------~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
+|||+++.++..+++.+ ++++++|.++++|++.+++++.+
T Consensus 291 ~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 291 LPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred CCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 99999999999998887 89999999999999998887754
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.93 E-value=4.6e-25 Score=163.61 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC------------C---------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS------------C--------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------~--------------------- 48 (159)
++.++++|++.++.+.+.++. . ++.++|||+|...|.+... .
T Consensus 140 ~~~ii~~S~~~~~~~~~~~~~---~--~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A 214 (380)
T PRK15484 140 NAKIIVPSQFLKKFYEERLPN---A--DISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQA 214 (380)
T ss_pred CCEEEEcCHHHHHHHHhhCCC---C--CEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHH
Confidence 578999999999988775432 2 2779999999876654211 1
Q ss_pred ---------cccccccccHH---------HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC-CCCcc
Q 036860 49 ---------GCDKLLRENVE---------YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD-EHFGI 109 (159)
Q Consensus 49 ---------~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~-e~~g~ 109 (159)
.....+.|++. +.+.+++++.+++ .++.|+|+++.+++..+|+.||++++||.+ |+||+
T Consensus 215 ~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~ 292 (380)
T PRK15484 215 FEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCM 292 (380)
T ss_pred HHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccccc
Confidence 22233446542 3445666666654 579999999999999999999999999975 99999
Q ss_pred HHHHhhhcCCcEEEeCCCCCceeecc-------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 110 VPLEAMAAYKPVSACDSGGPVETIKN-------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 110 ~~lEama~G~Pvi~~~~~~~~e~i~~-------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+++|||+||+|||+++.||..|++.+ ++++++|.++++|++. .+|+++|
T Consensus 293 ~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~a 354 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQA 354 (380)
T ss_pred HHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHH
Confidence 99999999999999999999998765 8999999999999975 5676653
No 18
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=2.4e-25 Score=168.22 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=106.6
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC---------------CC---------------------
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH---------------SC--------------------- 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~---------------~~--------------------- 48 (159)
+++.|..+++.+.+.++..+.+ +.+||||+|+..|.+.. ..
T Consensus 342 ~v~~s~~v~~~l~~~lgip~~K---I~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~ 418 (578)
T PRK15490 342 FMSNNHCVTRHYADWLKLEAKH---FQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWID 418 (578)
T ss_pred hhhccHHHHHHHHHHhCCCHHH---EEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHH
Confidence 5677888888888877665555 88999999987655521 00
Q ss_pred ----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 49 ----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 49 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
.+...+.|+|+..++++++++++++.++|+|+|+. .++..+|+.+|++++||.+||||++++|||+||
T Consensus 419 A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~G 496 (578)
T PRK15490 419 FAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVG 496 (578)
T ss_pred HHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhC
Confidence 23445679999999999999999998999999995 577999999999999999999999999999999
Q ss_pred CcEEEeCCCCCceeecc
Q 036860 119 KPVSACDSGGPVETIKN 135 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~ 135 (159)
+|||+++.||..|++.+
T Consensus 497 lPVVATdvGG~~EiV~d 513 (578)
T PRK15490 497 VPVISTPAGGSAECFIE 513 (578)
T ss_pred CCEEEeCCCCcHHHccc
Confidence 99999999999998876
No 19
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.93 E-value=5.4e-25 Score=161.39 Aligned_cols=146 Identities=23% Similarity=0.401 Sum_probs=121.2
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC--------------------------cccccc
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------GCDKLL 54 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------~~~~~i 54 (159)
.+|.++++|+.+++.+.+.++. +..+++||+|.+.|.+.... .....+
T Consensus 153 ~~d~ii~~S~~~~~~~~~~~~~------~~~vi~~~~d~~~~~~~~~~~~~il~~G~~~~~K~~~~li~a~~~~~~~l~i 226 (351)
T cd03804 153 RVDYFIANSRFVARRIKKYYGR------DATVIYPPVDTDRFTPAEEKEDYYLSVGRLVPYKRIDLAIEAFNKLGKRLVV 226 (351)
T ss_pred CCCEEEECCHHHHHHHHHHhCC------CcEEECCCCCHhhcCcCCCCCCEEEEEEcCccccChHHHHHHHHHCCCcEEE
Confidence 3799999999999999876553 25699999999887664411 344556
Q ss_pred cccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 55 RENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
.|+++..+.+++ +..++|.|+|+++++++.++|++||++++||. |++|++++|||+||+|||+++.++..|++.
T Consensus 227 vG~g~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~ 300 (351)
T cd03804 227 IGDGPELDRLRA-----KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVI 300 (351)
T ss_pred EECChhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceee
Confidence 688877666665 34578999999999999999999999999999 999999999999999999999999999887
Q ss_pred c------------HHHHHHHHHHhcCH-HHHHHhhhc
Q 036860 135 N------------EEFSLSMAKLIQEP-QMAKNMGEN 158 (159)
Q Consensus 135 ~------------~~l~~~i~~l~~~~-~~~~~~~~~ 158 (159)
+ ++++++|.++++|+ ..+++++++
T Consensus 301 ~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~ 337 (351)
T cd03804 301 DGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAH 337 (351)
T ss_pred CCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHH
Confidence 6 78999999999988 555555543
No 20
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=2.5e-25 Score=169.23 Aligned_cols=151 Identities=25% Similarity=0.287 Sum_probs=124.3
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----C----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----C---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----~---------------------------- 48 (159)
||.|+++|+..++.+.+ ++..+.| +.+||||+|.+.|.+... .
T Consensus 245 ad~Ii~~s~~~~~~~~~-~g~~~~k---i~vIpNgid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 320 (475)
T cd03813 245 ADRITTLYEGNRERQIE-DGADPEK---IRVIPNGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRK 320 (475)
T ss_pred CCEEEecCHHHHHHHHH-cCCCHHH---eEEeCCCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHH
Confidence 79999999999887654 3443444 779999999987765432 1
Q ss_pred ---cccccccccH----HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcE
Q 036860 49 ---GCDKLLRENV----EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPV 121 (159)
Q Consensus 49 ---~~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pv 121 (159)
.....+.|.+ .+.++++++++++++.++|+|+| ..++.++|+.+|++++||..|++|++++|||+||+||
T Consensus 321 ~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PV 397 (475)
T cd03813 321 KIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPV 397 (475)
T ss_pred hCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCE
Confidence 2333455655 57788899999999999999999 4578899999999999999999999999999999999
Q ss_pred EEeCCCCCceeecc------------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 122 SACDSGGPVETIKN------------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 122 i~~~~~~~~e~i~~------------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|+|+.++..|++.+ ++++++|.++++|++.+++|+++|
T Consensus 398 Vatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a 453 (475)
T cd03813 398 VATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAG 453 (475)
T ss_pred EECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998887765421 899999999999999999998764
No 21
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=7.6e-25 Score=161.29 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=127.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC------------C---------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS------------C--------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------~--------------------- 48 (159)
||.++++|+..++.+.+.+. ...+ +.+++||+|...+.+... .
T Consensus 143 ~d~ii~~s~~~~~~~~~~~~-~~~~---i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a 218 (371)
T cd04962 143 SDGVTAVSESLRQETYELFD-ITKE---IEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRI 218 (371)
T ss_pred CCEEEEcCHHHHHHHHHhcC-CcCC---EEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHH
Confidence 79999999999999887653 2222 779999999766543211 0
Q ss_pred --------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc
Q 036860 49 --------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P 120 (159)
.....+.|.+.....+++++.+.+.+++|.|+|+++ ++.++|+.||++++||..|++|++++|||++|+|
T Consensus 219 ~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~P 296 (371)
T cd04962 219 FAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVP 296 (371)
T ss_pred HHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCC
Confidence 233445677877888999999988888999999874 6899999999999999999999999999999999
Q ss_pred EEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+++.++..|++.+ +++++++.++++|++.+++|+++|
T Consensus 297 vI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 347 (371)
T cd04962 297 VVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAA 347 (371)
T ss_pred EEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999998865 889999999999999998888754
No 22
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.93 E-value=1.3e-24 Score=165.37 Aligned_cols=154 Identities=11% Similarity=0.102 Sum_probs=121.3
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC--------------------------------c
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------G 49 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------~ 49 (159)
+|.+|++|+..++.+.+.++......-++.++|+|++...+.+.... .
T Consensus 271 ~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~ 350 (500)
T TIGR02918 271 IDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPE 350 (500)
T ss_pred CCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcccccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCC
Confidence 69999999999998887665321111237799999775443332111 2
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC-C
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG-G 128 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~-~ 128 (159)
....+.|.|+..+.++++++++++.++|.|+|+. ++.++|+.||++++||..||||++++||||||+|||+++.+ |
T Consensus 351 ~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G 427 (500)
T TIGR02918 351 LTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG 427 (500)
T ss_pred eEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC
Confidence 2334679999889999999999998999999976 46789999999999999999999999999999999999985 7
Q ss_pred Cceeecc--------------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 129 PVETIKN--------------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 129 ~~e~i~~--------------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
..|++.+ ++|+++|.++++ ++.+++|+++|
T Consensus 428 ~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a 477 (500)
T TIGR02918 428 NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYS 477 (500)
T ss_pred CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 8887765 248899999995 55688888764
No 23
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.93 E-value=1e-24 Score=163.27 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=126.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC---------------C------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS---------------C------------------ 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~---------------~------------------ 48 (159)
||.++++|+..++.+.+. +....+ +.+++||+|.+.|.+... .
T Consensus 172 ad~ii~~S~~~~~~~~~~-~~~~~~---i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~l 247 (412)
T PRK10307 172 FDNVSTISRSMMNKAREK-GVAAEK---VIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELV 247 (412)
T ss_pred CCEEEecCHHHHHHHHHc-CCCccc---EEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHH
Confidence 799999999999998763 332333 779999999876654211 0
Q ss_pred -----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCC----CccHHHH
Q 036860 49 -----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEH----FGIVPLE 113 (159)
Q Consensus 49 -----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~----~g~~~lE 113 (159)
.....+.|+|...+.++++++.++++ +|+|+|+++++++.++|+.||++++|+..|+ +|.+++|
T Consensus 248 i~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~e 326 (412)
T PRK10307 248 IDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTN 326 (412)
T ss_pred HHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHH
Confidence 24455779999999999999998886 7999999999999999999999999999888 5677899
Q ss_pred hhhcCCcEEEeCCCCC--ceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 114 AMAAYKPVSACDSGGP--VETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 114 ama~G~Pvi~~~~~~~--~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+||+|||+++.+|. .+++.. ++|+++|.++++|++++++|+++|
T Consensus 327 ama~G~PVi~s~~~g~~~~~~i~~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a 384 (412)
T PRK10307 327 MLASGRNVVATAEPGTELGQLVEGIGVCVEPESVEALVAAIAALARQALLRPKLGTVA 384 (412)
T ss_pred HHHcCCCEEEEeCCCchHHHHHhCCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999987663 454433 899999999999999999998864
No 24
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=2.5e-24 Score=157.45 Aligned_cols=154 Identities=27% Similarity=0.404 Sum_probs=130.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC----------C-----------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS----------C----------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~----------~----------------------- 48 (159)
||.++++|+...+.+...... +. ++.+++||+|...+.+... .
T Consensus 138 ~d~vi~~s~~~~~~~~~~~~~-~~---~~~~i~~gi~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~ 213 (357)
T cd03795 138 ADAIVATSPNYAETSPVLRRF-RD---KVRVIPLGLDPARYPRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAA 213 (357)
T ss_pred cCEEEeCcHHHHHHHHHhcCC-cc---ceEEecCCCChhhcCCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHH
Confidence 799999999999887665432 23 3779999999876654322 1
Q ss_pred ----cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEE
Q 036860 49 ----GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVS 122 (159)
Q Consensus 49 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi 122 (159)
.+...+.|+++....+.+.+++.+..++|.|+|+++++++.++|+.||++++||. .|++|++++|||++|+|||
T Consensus 214 ~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi 293 (357)
T cd03795 214 AALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVI 293 (357)
T ss_pred HhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEE
Confidence 2455567888888999999988888899999999999999999999999999986 5999999999999999999
Q ss_pred EeCCCCCceeec--c-----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 123 ACDSGGPVETIK--N-----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 123 ~~~~~~~~e~i~--~-----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+++.++..+.+. . ++++++|.++++|++.+++|+++|
T Consensus 294 ~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~ 343 (357)
T cd03795 294 STEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAA 343 (357)
T ss_pred ecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 999988887664 1 899999999999999999998764
No 25
>PLN02939 transferase, transferring glycosyl groups
Probab=99.92 E-value=2.8e-24 Score=169.81 Aligned_cols=158 Identities=11% Similarity=0.155 Sum_probs=125.1
Q ss_pred CccEEEEcCHhhHHHHHHHhh-----hhhccCceeEEEecCCccccccCCCCC---------------------------
Q 036860 1 MADVILVDSKFTANTFADTFK-----KLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~-----~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------- 48 (159)
+||.|+++|+..++.+...++ ......-++.+|+||||++.|.|....
T Consensus 693 ~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL 772 (977)
T PLN02939 693 YSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGL 772 (977)
T ss_pred hCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCC
Confidence 589999999999988876322 111112237799999999988775320
Q ss_pred -----------------------------------cccccccccHH---HHHHHHHHHHHcCCCCcEEEccCCCHHHHHH
Q 036860 49 -----------------------------------GCDKLLRENVE---YLEELKSLAERNGMSDRVNFITSCSTTERNA 90 (159)
Q Consensus 49 -----------------------------------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 90 (159)
+....+.|+|+ +...+++++.+++..++|.|+|..++.....
T Consensus 773 ~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~ 852 (977)
T PLN02939 773 SSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHS 852 (977)
T ss_pred CcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHH
Confidence 12223446663 3577888899988888999999999888889
Q ss_pred HHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec------------c---------HHHHHHHHHHhc--
Q 036860 91 LLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK------------N---------EEFSLSMAKLIQ-- 147 (159)
Q Consensus 91 ~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~------------~---------~~l~~~i~~l~~-- 147 (159)
+|+.||+|++||.+|+||++++|||+||+|+|++++||+.|++. + ++|+++|.++++
T Consensus 853 IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~ 932 (977)
T PLN02939 853 IYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYY 932 (977)
T ss_pred HHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988763 1 778888887664
Q ss_pred --CHHHHHHhhhc
Q 036860 148 --EPQMAKNMGEN 158 (159)
Q Consensus 148 --~~~~~~~~~~~ 158 (159)
|++.+++|+++
T Consensus 933 ~~dpe~~~~L~~~ 945 (977)
T PLN02939 933 KRKPEVWKQLVQK 945 (977)
T ss_pred ccCHHHHHHHHHH
Confidence 88988888765
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=1.1e-24 Score=170.20 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=116.3
Q ss_pred cEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC---------------CC-------------------
Q 036860 3 DVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH---------------SC------------------- 48 (159)
Q Consensus 3 d~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~---------------~~------------------- 48 (159)
+.++++|+..++.+.+.++....+ +.|||||||...|.+.+ ..
T Consensus 460 ~i~Vs~S~~~~~~l~~~~g~~~~k---I~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI 536 (694)
T PRK15179 460 VALSSNSQFAAHRYADWLGVDERR---IPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWV 536 (694)
T ss_pred eEEEeCcHHHHHHHHHHcCCChhH---EEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHH
Confidence 467788888888887766654444 77999999987664211 00
Q ss_pred -----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhc
Q 036860 49 -----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAA 117 (159)
Q Consensus 49 -----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~ 117 (159)
.+...+.|+|++.+.++++++++++.++|.|+|+++ ++..+|+.+|++++||.+|+||++++|||+|
T Consensus 537 ~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~ 614 (694)
T PRK15179 537 EAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFS 614 (694)
T ss_pred HHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHc
Confidence 244557788999999999999999999999999985 5789999999999999999999999999999
Q ss_pred CCcEEEeCCCCCceeecc--------------HHHHHHHHHHhcCH
Q 036860 118 YKPVSACDSGGPVETIKN--------------EEFSLSMAKLIQEP 149 (159)
Q Consensus 118 G~Pvi~~~~~~~~e~i~~--------------~~l~~~i~~l~~~~ 149 (159)
|+|||+|+.+|..|++.+ ++++++|.+++.+.
T Consensus 615 G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 615 GVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred CCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 999999999999999876 36788887776543
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.92 E-value=3.3e-24 Score=159.08 Aligned_cols=155 Identities=24% Similarity=0.347 Sum_probs=127.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-------------C--------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-------------C-------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-------------~-------------------- 48 (159)
||.++++|+..++.+.+.+.....+ +.+++||+|.+.+.+... .
T Consensus 164 ad~ii~~s~~~~~~~~~~~~~~~~~---~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~ 240 (398)
T cd03800 164 ADRVIASTPQEAEELYSLYGAYPRR---IRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIR 240 (398)
T ss_pred CCEEEEcCHHHHHHHHHHccccccc---cEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHH
Confidence 7999999999999988776543333 679999999876654321 1
Q ss_pred ----------cccccccccHH------HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHH
Q 036860 49 ----------GCDKLLRENVE------YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPL 112 (159)
Q Consensus 49 ----------~~~~~i~~~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~l 112 (159)
.+...+.|++. +...++++++..++.+++.|+|+++.+++.++|+.||++++||..|++|++++
T Consensus 241 a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~ 320 (398)
T cd03800 241 AYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTAL 320 (398)
T ss_pred HHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHH
Confidence 12333445432 23456777888888889999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 113 EAMAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|||++|+|||+++.++..+++.+ ++++++|.+++++++.+++|+++|
T Consensus 321 Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a 379 (398)
T cd03800 321 EAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAG 379 (398)
T ss_pred HHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999988866 899999999999999998888653
No 28
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=3.3e-24 Score=157.23 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=123.7
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccC----------CCCC----------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDK----------PHSC---------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~----------~~~~---------------------- 48 (159)
.||.++++|++.++.+.+.++.. ..+++||+|...+.+ .+..
T Consensus 143 ~ad~ii~~s~~~~~~~~~~~~~~------~~~i~ngv~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~ 216 (363)
T cd04955 143 FADRLIADSPGIKEYLKEKYGRD------STYIPYGADHVVSSEEDEILKKYGLEPGRYYLLVGRIVPENNIDDLIEAFS 216 (363)
T ss_pred hccEEEeCCHHHHHHHHHhcCCC------CeeeCCCcChhhcchhhhhHHhcCCCCCcEEEEEecccccCCHHHHHHHHH
Confidence 37999999999999997766541 369999999776543 0000
Q ss_pred ----cccccccccHHHHHHHHHHHH-HcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC-CCCccHHHHhhhcCCcEE
Q 036860 49 ----GCDKLLRENVEYLEELKSLAE-RNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD-EHFGIVPLEAMAAYKPVS 122 (159)
Q Consensus 49 ----~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~-e~~g~~~lEama~G~Pvi 122 (159)
.....+.|+++....+.+.+. ..+..++|+|+|+++++++..+++.||++++||.. |++|++++|||+||+|||
T Consensus 217 ~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI 296 (363)
T cd04955 217 KSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVL 296 (363)
T ss_pred hhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEE
Confidence 233445576644444555554 56777899999999999999999999999999998 999999999999999999
Q ss_pred EeCCCCCceeecc--------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 123 ACDSGGPVETIKN--------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 123 ~~~~~~~~e~i~~--------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|+.++..|++.+ +.+++++.+++++++.+.+|+++|
T Consensus 297 ~s~~~~~~e~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 341 (363)
T cd04955 297 ASDNPFNREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKAA 341 (363)
T ss_pred EecCCccceeecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999887 449999999999999988888753
No 29
>PRK14098 glycogen synthase; Provisional
Probab=99.92 E-value=4.9e-24 Score=162.23 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=122.0
Q ss_pred CccEEEEcCHhhHHHHHHH----hhhh---hccCceeEEEecCCccccccCCCCC-------------------------
Q 036860 1 MADVILVDSKFTANTFADT----FKKL---HARGIRLVVLYLAVNVYQFDKPHSC------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~----~~~~---~~~~i~~~vi~~~vd~~~~~~~~~~------------------------- 48 (159)
+||.|+++|+..++.+.+. ++.. ..+.-++.+|+||||++.|.|....
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~l 299 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEV 299 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHh
Confidence 4899999999999988652 1211 0111137799999999988764310
Q ss_pred ------------------------------------cccccccccHH--HHHHHHHHHHHcCCCCcEEEccCCCHHHHHH
Q 036860 49 ------------------------------------GCDKLLRENVE--YLEELKSLAERNGMSDRVNFITSCSTTERNA 90 (159)
Q Consensus 49 ------------------------------------~~~~~i~~~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 90 (159)
+....+.|+|+ +.+.++++++++ +++|.|+|.++++++..
T Consensus 300 gl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~--~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 300 GLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEH--PEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHC--CCCEEEEEecCHHHHHH
Confidence 22233446554 567888888876 46899999999999999
Q ss_pred HHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc----------------HHHHHHHHHHh---cCHHH
Q 036860 91 LLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN----------------EEFSLSMAKLI---QEPQM 151 (159)
Q Consensus 91 ~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~----------------~~l~~~i~~l~---~~~~~ 151 (159)
+|+.||++++||..|+||++.+|||+||+|+|+++.||..|.+.+ ++++++|.+++ +|++.
T Consensus 378 ~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 378 AIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEER 457 (489)
T ss_pred HHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999999888741 88999998754 68888
Q ss_pred HHHhhhc
Q 036860 152 AKNMGEN 158 (159)
Q Consensus 152 ~~~~~~~ 158 (159)
+++|+++
T Consensus 458 ~~~~~~~ 464 (489)
T PRK14098 458 WEELVLE 464 (489)
T ss_pred HHHHHHH
Confidence 8887764
No 30
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.91 E-value=1.1e-23 Score=154.15 Aligned_cols=153 Identities=26% Similarity=0.374 Sum_probs=123.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----------------C----------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----------------C---------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----------------~---------------- 48 (159)
||.++++|++.++.+.+.++....+ +.+++||+|...+.+... .
T Consensus 125 ~~~vi~~s~~~~~~~~~~~~~~~~k---~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 125 GDRVIAVSNFIADHIRENYGVDPDR---IRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQE 201 (355)
T ss_pred cCEEEEeCHHHHHHHHHhcCCChhh---EEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHH
Confidence 7999999999999998776654444 779999999887654321 1
Q ss_pred --------------cccccccccHH----HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCC-CCCCCcc
Q 036860 49 --------------GCDKLLRENVE----YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTP-KDEHFGI 109 (159)
Q Consensus 49 --------------~~~~~i~~~~~----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s-~~e~~g~ 109 (159)
.+...+.|.+. +...+.+.+.+.+..++|+|+|+ .+++.++|+.||++++|| ..|++|+
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~ 279 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGR 279 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCch
Confidence 23334455543 34555667788888889999999 467899999999999999 7899999
Q ss_pred HHHHhhhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHh-cCHHHHHHhhhcC
Q 036860 110 VPLEAMAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLI-QEPQMAKNMGENA 159 (159)
Q Consensus 110 ~~lEama~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~-~~~~~~~~~~~~a 159 (159)
+++|||++|+|||+++.++..|++.+ ++++++|..++ .+++++++|+++|
T Consensus 280 ~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a 342 (355)
T cd03819 280 TAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKA 342 (355)
T ss_pred HHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 99999999999999999999998876 89999996555 4899999998864
No 31
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.91 E-value=8.7e-24 Score=158.40 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=95.3
Q ss_pred cccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC---CCCCccHHHHhhhcCCcEEEeCCC
Q 036860 51 DKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK---DEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 51 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~---~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
...+.|+|+..+.++++++++++++.+.+.|+++.+++.++|+.||++++++. .+++|++++||||||+|||+++.+
T Consensus 271 ~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~ 350 (415)
T cd03816 271 LCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK 350 (415)
T ss_pred EEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC
Confidence 34466889999999999999998754555579999999999999999997532 478999999999999999999999
Q ss_pred CCceeecc----------HHHHHHHHHHhcC---HHHHHHhhhcC
Q 036860 128 GPVETIKN----------EEFSLSMAKLIQE---PQMAKNMGENA 159 (159)
Q Consensus 128 ~~~e~i~~----------~~l~~~i~~l~~~---~~~~~~~~~~a 159 (159)
+..|++.+ ++++++|.++++| ++++++|+++|
T Consensus 351 ~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~ 395 (415)
T cd03816 351 CIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGA 395 (415)
T ss_pred CHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999976 8999999999999 89999999875
No 32
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.91 E-value=1.6e-23 Score=155.33 Aligned_cols=156 Identities=23% Similarity=0.319 Sum_probs=121.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------- 48 (159)
||.++++|+.+++.+.+.++..+.+ ++.+++||+|...+.+....
T Consensus 145 ad~vi~~S~~~~~~~~~~~~~~~~~--~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a 222 (388)
T TIGR02149 145 ADRVIAVSGGMREDILKYYPDLDPE--KVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDA 222 (388)
T ss_pred CCEEEEccHHHHHHHHHHcCCCCcc--eEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHH
Confidence 7999999999999998876433323 27799999998876543210
Q ss_pred ------cccccccccH----HHHHHHHHHHHHcCC-CCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhh
Q 036860 49 ------GCDKLLRENV----EYLEELKSLAERNGM-SDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMA 116 (159)
Q Consensus 49 ------~~~~~i~~~~----~~~~~~~~~~~~~~~-~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama 116 (159)
.....+.|++ .+.+.+++.+..++. .+++.|+ |.++.+++.++|+.||++++||..|++|++++|||+
T Consensus 223 ~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a 302 (388)
T TIGR02149 223 VHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMA 302 (388)
T ss_pred HHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHH
Confidence 1222233332 235566666666654 2357765 679999999999999999999999999999999999
Q ss_pred cCCcEEEeCCCCCceeecc------------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 117 AYKPVSACDSGGPVETIKN------------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 117 ~G~Pvi~~~~~~~~e~i~~------------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+|||+++.++..|++.+ ++++++|.++++|++.+++|+++|
T Consensus 303 ~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a 363 (388)
T TIGR02149 303 CGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAG 363 (388)
T ss_pred cCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999998865 379999999999999998887753
No 33
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.91 E-value=1.1e-23 Score=155.51 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=126.5
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC--C-CC------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP--H-SC------------------------------ 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~--~-~~------------------------------ 48 (159)
+|.+++.|+..++.+.+.++.. .+ +.++|+|++...+.+. . ..
T Consensus 158 ~d~ii~~s~~~~~~l~~~~~~~-~~---v~~ip~g~~~~~~~~~~~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~ 233 (372)
T cd04949 158 VDGVIVATEQQKQDLQKQFGNY-NP---IYTIPVGSIDPLKLPAQFKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQV 233 (372)
T ss_pred CCEEEEccHHHHHHHHHHhCCC-Cc---eEEEcccccChhhcccchhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhC
Confidence 6899999999999998876642 22 6799999998776653 1 11
Q ss_pred -cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 49 -GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 49 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
.....+.|.+.....+.+.+...+++++|.|.|+. .++.++|+.||++++||..||||++++|||++|+|||+++.+
T Consensus 234 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~ 311 (372)
T cd04949 234 PDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN 311 (372)
T ss_pred CCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCC
Confidence 23344568887788888888888998999999965 467999999999999999999999999999999999999986
Q ss_pred -CCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 128 -GPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 128 -~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|..+++.+ ++++++|..+++|++.+++|+++|
T Consensus 312 ~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 356 (372)
T cd04949 312 YGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAA 356 (372)
T ss_pred CCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 67777765 899999999999999999988764
No 34
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.91 E-value=2.4e-23 Score=152.12 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=130.5
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC------------C--------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS------------C-------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------~-------------------- 48 (159)
.||.++++|+..++.+.+... +. ++.++++|+|...+.+... .
T Consensus 148 ~~d~i~~~s~~~~~~~~~~~~--~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 222 (374)
T cd03817 148 RCDAVIAPSEKIADLLREYGV--KR---PIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIR 222 (374)
T ss_pred hCCEEEeccHHHHHHHHhcCC--CC---ceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHH
Confidence 379999999999988876422 22 2679999999876654321 1
Q ss_pred ----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 49 ----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 49 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
.+...+.|.+...+.+++.+++.+..++|.|+|+++.+++.++|+.||++++|+..|++|++++|||+||
T Consensus 223 ~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g 302 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAG 302 (374)
T ss_pred HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcC
Confidence 2344566888888889999988888899999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCCCCceeecc-----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 119 KPVSACDSGGPVETIKN-----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~-----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|||+++.++..+++.+ .++++++.+++++++.+++|++++
T Consensus 303 ~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 354 (374)
T cd03817 303 LPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNA 354 (374)
T ss_pred CcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999999999887 489999999999999988888764
No 35
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.91 E-value=2.5e-23 Score=158.23 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=123.0
Q ss_pred CccEEEEcCHhhHHHHHHH-hhh-----hhccCceeEEEecCCccccccCCCC---------------------------
Q 036860 1 MADVILVDSKFTANTFADT-FKK-----LHARGIRLVVLYLAVNVYQFDKPHS--------------------------- 47 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~-~~~-----~~~~~i~~~vi~~~vd~~~~~~~~~--------------------------- 47 (159)
+||.++++|+..++.+.+. ++. .....-++.+|+||+|.+.|.|...
T Consensus 205 ~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 284 (473)
T TIGR02095 205 YADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELG 284 (473)
T ss_pred hCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcC
Confidence 4899999999998888642 110 0001113779999999998875311
Q ss_pred ------C----------------------------cccccccccH--HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHH
Q 036860 48 ------C----------------------------GCDKLLRENV--EYLEELKSLAERNGMSDRVNFITSCSTTERNAL 91 (159)
Q Consensus 48 ------~----------------------------~~~~~i~~~~--~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~ 91 (159)
. +....+.|++ .+.+.+++++.+.+ .++.+.+..+++++..+
T Consensus 285 l~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 285 LPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYP--GNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHH
Confidence 1 2233445666 56778888887654 57889988898888999
Q ss_pred HHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc------------------HHHHHHHHHHhc----CH
Q 036860 92 LFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN------------------EEFSLSMAKLIQ----EP 149 (159)
Q Consensus 92 ~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~------------------~~l~~~i~~l~~----~~ 149 (159)
|+.||++++||.+|+||++++|||+||+|+|+++.+|..|++.+ ++++++|.++++ ++
T Consensus 363 ~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~ 442 (473)
T TIGR02095 363 YAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDP 442 (473)
T ss_pred HHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999998742 889999998887 89
Q ss_pred HHHHHhhhcC
Q 036860 150 QMAKNMGENA 159 (159)
Q Consensus 150 ~~~~~~~~~a 159 (159)
+.+++|+++|
T Consensus 443 ~~~~~~~~~~ 452 (473)
T TIGR02095 443 SLWEALQKNA 452 (473)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 36
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.91 E-value=1.6e-23 Score=153.19 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=126.5
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC------------C---------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS------------C--------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------~--------------------- 48 (159)
+|.++++|++.++.+.+.++....+ +.+++||+|...+..... .
T Consensus 141 ~d~~i~~s~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~ 217 (365)
T cd03809 141 ADAIITVSEATKRDLLRYLGVPPDK---IVVIPLGVDPRFRPPPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAF 217 (365)
T ss_pred cCEEEEccHHHHHHHHHHhCcCHHH---EEeeccccCccccCCCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHH
Confidence 7999999999999999887654444 789999999877655321 1
Q ss_pred ------c--ccccccccHH-HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC
Q 036860 49 ------G--CDKLLRENVE-YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK 119 (159)
Q Consensus 49 ------~--~~~~i~~~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~ 119 (159)
+ +...+.|.+. ......+.+++.+..++|+++|+++++++.++|+.||++++||..|++|++++|||++|+
T Consensus 218 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~ 297 (365)
T cd03809 218 ARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGT 297 (365)
T ss_pred HHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC
Confidence 1 3333445332 223333333567788899999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 120 PVSACDSGGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 120 Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|||+++.++..|++.+ ++++++|.++++|++.+.+|+++|
T Consensus 298 pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 347 (365)
T cd03809 298 PVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLLEDPALREELRERG 347 (365)
T ss_pred cEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999876 899999999999999999988764
No 37
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.91 E-value=3.5e-23 Score=150.35 Aligned_cols=155 Identities=28% Similarity=0.371 Sum_probs=132.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC-------C----CC----------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP-------H----SC---------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~-------~----~~---------------------- 48 (159)
+|.+++.|+..++.+.+.++....+ +.+++||++...+.+. . ..
T Consensus 145 ~d~~i~~s~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~ 221 (374)
T cd03801 145 ADRIIAVSEATREELRELGGVPPEK---ITVIPNGVDTERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEAL 221 (374)
T ss_pred CCEEEEecHHHHHHHHhcCCCCCCc---EEEecCcccccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHH
Confidence 7899999999999998876543233 7899999998876431 1 00
Q ss_pred --------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc
Q 036860 49 --------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P 120 (159)
.....+.|.+.....+.+.+.+.+..++|.++|+++.+++.++|+.||++++|+..|++|++++|||++|+|
T Consensus 222 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~p 301 (374)
T cd03801 222 AKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLP 301 (374)
T ss_pred HHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCc
Confidence 133445678888888888888888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+++.++..+++.+ ++++++|.+++++++.+++|++++
T Consensus 302 vI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 302 VVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred EEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 999999999999884 899999999999999998888764
No 38
>PRK14099 glycogen synthase; Provisional
Probab=99.91 E-value=4.9e-23 Score=156.65 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=116.4
Q ss_pred CccEEEEcCHhhHHHHHHHh---------hhhhccCceeEEEecCCccccccCCCC------------------------
Q 036860 1 MADVILVDSKFTANTFADTF---------KKLHARGIRLVVLYLAVNVYQFDKPHS------------------------ 47 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~---------~~~~~~~i~~~vi~~~vd~~~~~~~~~------------------------ 47 (159)
.||.|+++|+..++.+.+.+ +.... ++.+|+||||++.|.|...
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~---ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 285 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRAD---RLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQA 285 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCC---CeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHH
Confidence 48999999999999887532 11122 3779999999987765321
Q ss_pred --------C-----------------------------cccccccccH--HHHHHHHHHHHHcCCCCcE-EEccCCCHHH
Q 036860 48 --------C-----------------------------GCDKLLRENV--EYLEELKSLAERNGMSDRV-NFITSCSTTE 87 (159)
Q Consensus 48 --------~-----------------------------~~~~~i~~~~--~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~ 87 (159)
. +....+.|+| .+.+.+++++++++ +++ .|+|+ +++
T Consensus 286 ~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~--~~v~~~~G~--~~~ 361 (485)
T PRK14099 286 RFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYP--GQIGVVIGY--DEA 361 (485)
T ss_pred HcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCC--CCEEEEeCC--CHH
Confidence 0 1222334554 35778888887764 345 78898 567
Q ss_pred HHHHH-HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec------------c---------HHHHHHHHH-
Q 036860 88 RNALL-FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK------------N---------EEFSLSMAK- 144 (159)
Q Consensus 88 l~~~~-~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~------------~---------~~l~~~i~~- 144 (159)
+..+| +.||++++||.+|+||++++|||+||+|+|+++.||+.|.+. . ++|+++|.+
T Consensus 362 l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 362 LAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred HHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHH
Confidence 88877 579999999999999999999999999889999999888662 1 899999986
Q ss_pred --HhcCHHHHHHhhhcC
Q 036860 145 --LIQEPQMAKNMGENA 159 (159)
Q Consensus 145 --l~~~~~~~~~~~~~a 159 (159)
+++|++.+++|+++|
T Consensus 442 ~~l~~d~~~~~~l~~~~ 458 (485)
T PRK14099 442 AALFADPVAWRRLQRNG 458 (485)
T ss_pred HHHhcCHHHHHHHHHHh
Confidence 778999999998764
No 39
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.90 E-value=4.7e-23 Score=156.48 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=117.3
Q ss_pred CccEEEEcCHhhHHHHHHH-h--------hhhhccCceeEEEecCCccccccCCCC------------------------
Q 036860 1 MADVILVDSKFTANTFADT-F--------KKLHARGIRLVVLYLAVNVYQFDKPHS------------------------ 47 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~-~--------~~~~~~~i~~~vi~~~vd~~~~~~~~~------------------------ 47 (159)
+||.|+++|+..++.+.+. + +.... ++.+|+||||.+.|.|...
T Consensus 197 ~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~---ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 273 (466)
T PRK00654 197 YADRVTTVSPTYAREITTPEFGYGLEGLLRARSG---KLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQE 273 (466)
T ss_pred hcCcCeeeCHHHHHHhccccCCcChHHHHHhccc---CceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHH
Confidence 4899999999999888652 1 22222 3779999999998765321
Q ss_pred -------C-----------------------------cccccccccH--HHHHHHHHHHHHcCCCCcEEE-ccCCCHHHH
Q 036860 48 -------C-----------------------------GCDKLLRENV--EYLEELKSLAERNGMSDRVNF-ITSCSTTER 88 (159)
Q Consensus 48 -------~-----------------------------~~~~~i~~~~--~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~l 88 (159)
. +....+.|+| .+.+.+++++++++ .++.+ .|+ +++.+
T Consensus 274 ~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~ 350 (466)
T PRK00654 274 RFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYP--GKVGVQIGY-DEALA 350 (466)
T ss_pred HhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCC--CcEEEEEeC-CHHHH
Confidence 1 2233344655 35678888888776 35665 455 66667
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc------------------HHHHHHHHHHhc---
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN------------------EEFSLSMAKLIQ--- 147 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~------------------~~l~~~i~~l~~--- 147 (159)
..+|+.||++++||.+|+||++++|||+||+|+|+++.||+.|++.+ ++|+++|.++++
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~ 430 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYR 430 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999998741 789999998876
Q ss_pred CHHHHHHhhhcC
Q 036860 148 EPQMAKNMGENA 159 (159)
Q Consensus 148 ~~~~~~~~~~~a 159 (159)
+++.+++|+++|
T Consensus 431 ~~~~~~~~~~~~ 442 (466)
T PRK00654 431 QPPLWRALQRQA 442 (466)
T ss_pred CHHHHHHHHHHH
Confidence 777788887653
No 40
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.90 E-value=4.7e-23 Score=161.55 Aligned_cols=100 Identities=21% Similarity=0.349 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCC-CHHHHHHHHH----hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 60 YLEELKSLAERNGMSDRVNFITSC-STTERNALLF----ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~-~~~~l~~~~~----~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
+...+.++++++++.++|.|+|++ +..+..++|+ .+|+|++||.+|+||++++|||+||+|||+|+.||..|++.
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~ 683 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQ 683 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhc
Confidence 456778889999999999999986 4455555554 35799999999999999999999999999999999999987
Q ss_pred c------------HHHHHHHHHHh----cCHHHHHHhhhcC
Q 036860 135 N------------EEFSLSMAKLI----QEPQMAKNMGENA 159 (159)
Q Consensus 135 ~------------~~l~~~i~~l~----~~~~~~~~~~~~a 159 (159)
+ ++++++|.+++ .|++.+++|+++|
T Consensus 684 dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a 724 (784)
T TIGR02470 684 DGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGG 724 (784)
T ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6 88999998875 6999999998764
No 41
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.90 E-value=6.7e-23 Score=152.82 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=109.5
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC---------C------------c-----------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS---------C------------G----------- 49 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~---------~------------~----------- 49 (159)
||.++++|+..++.+.+.++....+ +.+++||+|.+.|.+... . +
T Consensus 173 ad~vi~~S~~~~~~l~~~~~~~~~~---v~vipngvd~~~f~~~~~~~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~ 249 (397)
T TIGR03087 173 FDAATFVSRAEAELFRRLAPEAAGR---ITAFPNGVDADFFSPDRDYPNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERV 249 (397)
T ss_pred CCeEEEcCHHHHHHHHHhCCCCCCC---eEEeecccchhhcCCCccccCCCCCCCcEEEEEEecCCccCHHHHHHHHHHH
Confidence 7999999999999998765433333 779999999987765321 1 1
Q ss_pred ----------ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcC
Q 036860 50 ----------CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAY 118 (159)
Q Consensus 50 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G 118 (159)
....+.|+++. .. +.+++..++|+|+|+++ ++..+|+.||++++||. .||+|++++|||+||
T Consensus 250 ~~~l~~~~p~~~l~ivG~g~~-~~----~~~l~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G 322 (397)
T TIGR03087 250 FPAVRARRPAAEFYIVGAKPS-PA----VRALAALPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMA 322 (397)
T ss_pred HHHHHHHCCCcEEEEECCCCh-HH----HHHhccCCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcC
Confidence 11223344432 12 22333446799999997 57899999999999997 599999999999999
Q ss_pred CcEEEeCCCCCcee--------ecc--HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 119 KPVSACDSGGPVET--------IKN--EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~--------i~~--~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|||+|+.++.... +.+ ++++++|.++++|++.+++|+++|
T Consensus 323 ~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~a 373 (397)
T TIGR03087 323 KPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAA 373 (397)
T ss_pred CCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999985432111 111 899999999999999999998764
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.90 E-value=1e-22 Score=148.68 Aligned_cols=153 Identities=26% Similarity=0.295 Sum_probs=121.8
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC------------C---------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS------------C--------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------~--------------------- 48 (159)
+|.++++|............ .. ++.+++||+|.+.+.+... .
T Consensus 150 ~~~i~~~s~~~~~~~~~~~~--~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 150 AAAVHATSEQEAAEIRRLGL--KA---PIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred CCEEEECCHHHHHHHHhhCC--cc---cEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 57788888777666654322 22 3779999999887655321 1
Q ss_pred ---------ccccccccc--HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhc
Q 036860 49 ---------GCDKLLREN--VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAA 117 (159)
Q Consensus 49 ---------~~~~~i~~~--~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~ 117 (159)
.+...+.|. +.+...++.++.+.++.++|+|+|+++++++..+|+.||++++||..|++|++++|||+|
T Consensus 225 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~ 304 (375)
T cd03821 225 FAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALAC 304 (375)
T ss_pred HHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhc
Confidence 122334443 344556666668888889999999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCCCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 118 YKPVSACDSGGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 118 G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|+|||+++.++..+++.+ ++++++|.+++++++.+++|+++|
T Consensus 305 G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 356 (375)
T cd03821 305 GTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALELPQRLKAMGENG 356 (375)
T ss_pred CCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999998765 899999999999999888888753
No 43
>PHA01630 putative group 1 glycosyl transferase
Probab=99.90 E-value=5.9e-23 Score=149.46 Aligned_cols=145 Identities=18% Similarity=0.184 Sum_probs=98.6
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---c----ccccc---cccHHHHHHHHHHHHH
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC---G----CDKLL---RENVEYLEELKSLAER 70 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~---~----~~~~i---~~~~~~~~~~~~~~~~ 70 (159)
.||.++++|+++++.+.+.....+. ++.+||||+|.+.|.+.... . +...+ .|-....+.+..+.++
T Consensus 94 ~ad~ii~~S~~~~~~l~~~g~~~~~---~i~vIpNGVd~~~f~~~~~~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~ 170 (331)
T PHA01630 94 PVDEIVVPSQWSKNAFYTSGLKIPQ---PIYVIPHNLNPRMFEYKPKEKPHPCVLAILPHSWDRKGGDIVVKIFHELQNE 170 (331)
T ss_pred cCCEEEECCHHHHHHHHHcCCCCCC---CEEEECCCCCHHHcCCCccccCCCEEEEEeccccccCCHHHHHHHHHHHHhh
Confidence 3899999999999998764211122 37799999999888654322 0 00000 0111112222222211
Q ss_pred cC-----------CCCc-EE---EccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 71 NG-----------MSDR-VN---FITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 71 ~~-----------~~~~-v~---~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
.. ...+ .. +.|.++++++.++|+.||++++||..|+||++++||||||+|||+|+.||..|++.+
T Consensus 171 ~~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~ 250 (331)
T PHA01630 171 GYDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS 250 (331)
T ss_pred CCCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC
Confidence 00 0000 11 234589999999999999999999999999999999999999999999998887643
Q ss_pred -------------------------------HHHHHHHHHHhcC
Q 036860 136 -------------------------------EEFSLSMAKLIQE 148 (159)
Q Consensus 136 -------------------------------~~l~~~i~~l~~~ 148 (159)
+++++++.+++.|
T Consensus 251 ~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 251 NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALAN 294 (331)
T ss_pred CCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhC
Confidence 6788888888876
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.89 E-value=2.1e-22 Score=146.67 Aligned_cols=150 Identities=21% Similarity=0.315 Sum_probs=119.4
Q ss_pred cEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC--C-------------------------------c
Q 036860 3 DVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--C-------------------------------G 49 (159)
Q Consensus 3 d~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--~-------------------------------~ 49 (159)
|.++++|++.++.+.+.... .. ++.+++||+|...+.+... . .
T Consensus 145 d~ii~~s~~~~~~~~~~~~~-~~---~~~vi~n~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~ 220 (359)
T cd03823 145 DAVIAPSRFLLDRYVANGLF-AE---KISVIRNGIDLDRAKRPRRAPPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGD 220 (359)
T ss_pred CEEEEeCHHHHHHHHHcCCC-cc---ceEEecCCcChhhccccccCCCCCceEEEEEecCccccCHHHHHHHHHHHHhcC
Confidence 78999999999998775432 22 3789999999887765432 1 1
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
....+.|.+.......... +..++|.++|+++.+++.++|++||++++||. .|++|++++|||+||+|||+++.++
T Consensus 221 ~~l~i~G~~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~ 297 (359)
T cd03823 221 IELVIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGG 297 (359)
T ss_pred cEEEEEcCchhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCC
Confidence 2233445554443333222 44578999999999999999999999999998 7999999999999999999999999
Q ss_pred Cceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 129 PVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 129 ~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
..+++.+ +++++++.++++|++.+++|++++
T Consensus 298 ~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 298 MAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGI 340 (359)
T ss_pred HHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhH
Confidence 9888876 899999999999999999988764
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.89 E-value=1.9e-22 Score=145.84 Aligned_cols=151 Identities=25% Similarity=0.286 Sum_probs=120.9
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC-CCC-------------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP-HSC------------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~-~~~------------------------------- 48 (159)
.+|.+++.|+..+.... ..... ++.+++||++...+.+. ...
T Consensus 135 ~~d~ii~~s~~~~~~~~---~~~~~---~~~vi~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~ 208 (348)
T cd03820 135 RADAVVVLTEEDRALYY---KKFNK---NVVVIPNPLPFPPEEPSSDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHP 208 (348)
T ss_pred cCCEEEEeCHHHHHHhh---ccCCC---CeEEecCCcChhhccccCCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCC
Confidence 37999999999972221 22222 37899999998876654 211
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
.+...+.|.+.....+.+.+.+.+..++|.+.|+ .+++.++|++||++++||..|++|++++|||++|+|||+++.++
T Consensus 209 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~ 286 (348)
T cd03820 209 DWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPT 286 (348)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCC
Confidence 2344566888888888888999999899999999 57889999999999999999999999999999999999998654
Q ss_pred -Cceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 129 -PVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 129 -~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
..+++.+ ++++++|.++++|++.+++|+++|
T Consensus 287 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~ 330 (348)
T cd03820 287 GPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANA 330 (348)
T ss_pred chHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4444332 899999999999999999998764
No 46
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.89 E-value=3.4e-22 Score=146.34 Aligned_cols=151 Identities=22% Similarity=0.268 Sum_probs=122.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC--------------C-------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--------------C------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--------------~------------------- 48 (159)
++.++++|+..++.+.+.......+ +.++|||+|...+.+... .
T Consensus 131 ~~~~~~~s~~~~~~~~~~~~~~~~~---~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li 207 (360)
T cd04951 131 SDLTTNVSKEALDYFIASKAFNANK---SFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLL 207 (360)
T ss_pred cCceEEEcHHHHHHHHhccCCCccc---EEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHH
Confidence 5677888999888887753333333 779999999876543211 1
Q ss_pred -----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhc
Q 036860 49 -----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAA 117 (159)
Q Consensus 49 -----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~ 117 (159)
.+...+.|+++..+.+++.+++.+..++|.|+|++ .++.++|+.||++++||..|++|++++|||++
T Consensus 208 ~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~ 285 (360)
T cd04951 208 KAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMAC 285 (360)
T ss_pred HHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHc
Confidence 24455678888888999999988888899999986 46799999999999999999999999999999
Q ss_pred CCcEEEeCCCCCceeecc----------HHHHHHHHHHhc-CHHHHHHhhh
Q 036860 118 YKPVSACDSGGPVETIKN----------EEFSLSMAKLIQ-EPQMAKNMGE 157 (159)
Q Consensus 118 G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~-~~~~~~~~~~ 157 (159)
|+|||+++.++..|++.+ ++++++|.++++ +++.++.+++
T Consensus 286 G~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 336 (360)
T cd04951 286 ELPVVATDAGGVREVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGA 336 (360)
T ss_pred CCCEEEecCCChhhEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999877 889999999984 6666655543
No 47
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.89 E-value=3.1e-22 Score=144.77 Aligned_cols=152 Identities=24% Similarity=0.327 Sum_probs=126.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC--------C-------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--------C------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--------~------------------------- 48 (159)
+|.++++|+..++.+.+.++....+ +.+++||+|...+.+... .
T Consensus 136 ~d~ii~~s~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~ 212 (353)
T cd03811 136 ADKIVAVSEGVKEDLLKLLGIPPDK---IEVIYNPIDIEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFA 212 (353)
T ss_pred cceEEEeccchhhhHHHhhcCCccc---cEEecCCcChhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHH
Confidence 7899999999999998877643333 779999999876654321 1
Q ss_pred -------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcE
Q 036860 49 -------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPV 121 (159)
Q Consensus 49 -------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pv 121 (159)
.....+.|.+.....+.+.+.+++..++|.++|+++ ++.++++.||++++||..|++|++++|||++|+||
T Consensus 213 ~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~Pv 290 (353)
T cd03811 213 LLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPV 290 (353)
T ss_pred HhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCE
Confidence 233445677788888888999999889999999975 56899999999999999999999999999999999
Q ss_pred EEeCCCCCceeecc------------HHH---HHHHHHHhcCHHHHHHhhhc
Q 036860 122 SACDSGGPVETIKN------------EEF---SLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 122 i~~~~~~~~e~i~~------------~~l---~~~i~~l~~~~~~~~~~~~~ 158 (159)
|+++.++..|++.+ +++ .+.+..+.++++.+++++++
T Consensus 291 I~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 342 (353)
T cd03811 291 VATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAA 342 (353)
T ss_pred EEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 99999999998876 555 78888888899988888773
No 48
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.89 E-value=2.8e-22 Score=146.97 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=114.5
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC------c-----ccccccc---------cHHHH
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC------G-----CDKLLRE---------NVEYL 61 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~------~-----~~~~i~~---------~~~~~ 61 (159)
++.++++|++.++.+.+.+.....+ +.+++||+|...+.+.... + ....+.+ -....
T Consensus 136 ~~~~v~~s~~~~~~~~~~~~~~~~~---~~vi~ngi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll 212 (365)
T cd03825 136 NLTIVAPSRWLADCARSSSLFKGIP---IEVIPNGIDTTIFRPRDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELI 212 (365)
T ss_pred CcEEEehhHHHHHHHHhccccCCCc---eEEeCCCCcccccCCCcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHH
Confidence 4678999999999988765333333 7799999998877543221 0 0000001 11111
Q ss_pred HHHHHHHHH------------------cCCCCcEEEccCCC-HHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEE
Q 036860 62 EELKSLAER------------------NGMSDRVNFITSCS-TTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVS 122 (159)
Q Consensus 62 ~~~~~~~~~------------------~~~~~~v~~~g~~~-~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi 122 (159)
+.+..+.++ .+...++.++|+++ .+++..+|+.||++++||..|++|++++|||+||+|||
T Consensus 213 ~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI 292 (365)
T cd03825 213 EALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVV 292 (365)
T ss_pred HHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEE
Confidence 222211110 12345799999999 78899999999999999999999999999999999999
Q ss_pred EeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 123 ACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 123 ~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+++.++..|++.+ +++++++.+++++++.+++|+++|
T Consensus 293 ~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 341 (365)
T cd03825 293 AFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAA 341 (365)
T ss_pred EecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999998876 899999999999999888887753
No 49
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.88 E-value=9.8e-22 Score=142.79 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC--------------------------ccccccc
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------GCDKLLR 55 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------~~~~~i~ 55 (159)
++.++++|+..++.+... .+ +.+++||+|.+.|.+.... ++...+.
T Consensus 132 ~~~~~~~s~~~~~~~~~~-----~~---~~vi~ngvd~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~~~~~l~i~ 203 (335)
T cd03802 132 DVPFVSISDAQRRPWPPL-----PW---VATVHNGIDLDDYPFRGPKGDYLLFLGRISPEKGPHLAIRAARRAGIPLKLA 203 (335)
T ss_pred CCeEEEecHHHHhhcccc-----cc---cEEecCCcChhhCCCCCCCCCEEEEEEeeccccCHHHHHHHHHhcCCeEEEE
Confidence 467899999988766442 22 7799999999988754322 3444566
Q ss_pred ccHHHHHHHHHHHHHcC-CCCcEEEccCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeCCCCCceee
Q 036860 56 ENVEYLEELKSLAERNG-MSDRVNFITSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACDSGGPVETI 133 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~-~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~~~~~~e~i 133 (159)
|.+.....+........ +.++|.|+|++++.++.++|+.+|++++||. .|+||++++|||+||+|||+++.++..|++
T Consensus 204 G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i 283 (335)
T cd03802 204 GPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVV 283 (335)
T ss_pred eCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhe
Confidence 77766666665555543 4578999999999999999999999999998 599999999999999999999999999999
Q ss_pred cc----------HHHHHHHHHHhcCH
Q 036860 134 KN----------EEFSLSMAKLIQEP 149 (159)
Q Consensus 134 ~~----------~~l~~~i~~l~~~~ 149 (159)
.+ ++++++|.++.+.+
T Consensus 284 ~~~~~g~l~~~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 284 EDGVTGFLVDSVEELAAAVARADRLD 309 (335)
T ss_pred eCCCcEEEeCCHHHHHHHHHHHhccH
Confidence 87 89999999887633
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.88 E-value=7.1e-22 Score=144.26 Aligned_cols=146 Identities=25% Similarity=0.342 Sum_probs=114.9
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------- 48 (159)
+|.+++.|++..+.+.+.. .. ++.++++|+|...+.+....
T Consensus 145 ~d~i~~~s~~~~~~~~~~~---~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~~i~~ 218 (364)
T cd03814 145 ADRVLVPSPSLADELRARG---FR---RVRLWPRGVDTELFHPRRRDEALRARLGPPDRPVLLYVGRLAPEKNLEALLDA 218 (364)
T ss_pred CCEEEeCCHHHHHHHhccC---CC---ceeecCCCccccccCcccccHHHHHHhCCCCCeEEEEEeccccccCHHHHHHH
Confidence 7899999999998654431 12 26799999998776543211
Q ss_pred -----c---ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc
Q 036860 49 -----G---CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP 120 (159)
Q Consensus 49 -----~---~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P 120 (159)
. +...+.|.+.....++ +..++|.|+|+++.+++.++|+.||++++|+..|++|++++|||+||+|
T Consensus 219 ~~~l~~~~~~~l~i~G~~~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~P 292 (364)
T cd03814 219 DLPLRRRPPVRLVIVGDGPARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLP 292 (364)
T ss_pred HHHhhhcCCceEEEEeCCchHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCC
Confidence 0 2223334444333332 3346899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 121 VSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 121 vi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+++.++..+++.+ ++++++|.++++|++.+++|++++
T Consensus 293 vI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (364)
T cd03814 293 VVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARA 343 (364)
T ss_pred EEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999999998875 679999999999999999888753
No 51
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.88 E-value=9.9e-22 Score=143.15 Aligned_cols=147 Identities=26% Similarity=0.327 Sum_probs=123.5
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC----------C----------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS----------C---------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~----------~---------------------- 48 (159)
.+|.+++.|+..++.+.+.+ ... . ++.++++|+|...+.+... .
T Consensus 148 ~~d~ii~~s~~~~~~~~~~~-~~~-~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 148 RADAVIAVSEALADELKALG-IDP-E--KVTVIPNGVDTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred cCCeEEeCCHHHHHHHHHhc-CCC-C--ceEEcCCCcCcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 37999999999999998764 222 2 3779999999877665332 1
Q ss_pred ---------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC
Q 036860 49 ---------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK 119 (159)
Q Consensus 49 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~ 119 (159)
.+...+.|.+.....+.+.+++.+..++|.++|+++++++.++|++||++++|+..|++|++++|||++|+
T Consensus 224 ~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~ 303 (377)
T cd03798 224 LARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL 303 (377)
T ss_pred HHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCC
Confidence 23334557777778888888888888899999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHH
Q 036860 120 PVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQM 151 (159)
Q Consensus 120 Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~ 151 (159)
|+|+++.++..+++.+ ++++++|.++++++..
T Consensus 304 pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 304 PVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred CEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH
Confidence 9999999998888776 8899999999998774
No 52
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.88 E-value=1.3e-21 Score=148.88 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=118.4
Q ss_pred CccEEEEcCHhhHHHHHHH---------hhhhhccCceeEEEecCCccccccCCCC------------------------
Q 036860 1 MADVILVDSKFTANTFADT---------FKKLHARGIRLVVLYLAVNVYQFDKPHS------------------------ 47 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~---------~~~~~~~~i~~~vi~~~vd~~~~~~~~~------------------------ 47 (159)
+||.++++|+..++.+.+. ++.... ++.+|+||+|.+.|.+...
T Consensus 210 ~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~---ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~ 286 (476)
T cd03791 210 YADAVTTVSPTYAREILTPEFGEGLDGLLRARAG---KLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQE 286 (476)
T ss_pred hcCcCeecCHhHHHHhCCCCCCcchHHHHHhccC---CeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHH
Confidence 4799999999999888641 222223 3789999999988765321
Q ss_pred --------C-----------------------------cccccccccH--HHHHHHHHHHHHcCCCCcEEEccCCCHHHH
Q 036860 48 --------C-----------------------------GCDKLLRENV--EYLEELKSLAERNGMSDRVNFITSCSTTER 88 (159)
Q Consensus 48 --------~-----------------------------~~~~~i~~~~--~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l 88 (159)
. .....+.|.+ .+...+++++.+. .+++.+++..+++++
T Consensus 287 ~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 364 (476)
T cd03791 287 ELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARY--PGRVAVLIGYDEALA 364 (476)
T ss_pred HcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhC--CCcEEEEEeCCHHHH
Confidence 1 2223344544 4456777777665 467888777777778
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc------------------HHHHHHHHHHhc---
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN------------------EEFSLSMAKLIQ--- 147 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~------------------~~l~~~i~~l~~--- 147 (159)
..+|+.||++++||.+|+||++++|||+||+|+|+++.||..|++.+ ++++++|.++++
T Consensus 365 ~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~ 444 (476)
T cd03791 365 HLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYR 444 (476)
T ss_pred HHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999988853 789999988774
Q ss_pred CHHHHHHhhhcC
Q 036860 148 EPQMAKNMGENA 159 (159)
Q Consensus 148 ~~~~~~~~~~~a 159 (159)
+++.+++|++++
T Consensus 445 ~~~~~~~~~~~~ 456 (476)
T cd03791 445 DPEAWRKLQRNA 456 (476)
T ss_pred CHHHHHHHHHHH
Confidence 778888887753
No 53
>PLN02316 synthase/transferase
Probab=99.87 E-value=2.5e-21 Score=155.23 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=112.7
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC---------------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--------------------------------- 47 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--------------------------------- 47 (159)
+||.|+++|+..++.+...... ....-++.+|+||||++.|.|...
T Consensus 761 ~AD~ViTVS~tya~EI~~~~~l-~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d 839 (1036)
T PLN02316 761 YADKATTVSPTYSREVSGNSAI-APHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQAD 839 (1036)
T ss_pred HCCEEEeCCHHHHHHHHhccCc-ccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCccc
Confidence 4899999999999888764321 111113779999999987654310
Q ss_pred -C---------------------------cccccccccH---HHHHHHHHHHHHcCC--CCcEEEccCCCHHHHHHHHHh
Q 036860 48 -C---------------------------GCDKLLRENV---EYLEELKSLAERNGM--SDRVNFITSCSTTERNALLFE 94 (159)
Q Consensus 48 -~---------------------------~~~~~i~~~~---~~~~~~~~~~~~~~~--~~~v~~~g~~~~~~l~~~~~~ 94 (159)
. +..+.+.|+| .+...+++++.++++ +++|.|.|..++.....+|+.
T Consensus 840 ~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa 919 (1036)
T PLN02316 840 LPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG 919 (1036)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh
Confidence 0 1222344655 356788888888765 578999988866555689999
Q ss_pred CcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-------------------------HHHHHHHHHHhcC
Q 036860 95 CLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-------------------------EEFSLSMAKLIQE 148 (159)
Q Consensus 95 a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-------------------------~~l~~~i~~l~~~ 148 (159)
||++++||++|+||++++|||+||+|+|++++||+.|++.+ ++++.+|.+++.+
T Consensus 920 ADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 920 ADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998631 7788899888874
No 54
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.87 E-value=1.6e-21 Score=141.91 Aligned_cols=152 Identities=25% Similarity=0.291 Sum_probs=121.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC--------------C-------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--------------C------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--------------~------------------- 48 (159)
+|.++++|+..++.+.+. +....+ +.+++||+|...+.+... .
T Consensus 137 ~~~~i~~s~~~~~~~~~~-~~~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li 212 (365)
T cd03807 137 IPLIVANSAAAAEYHQAI-GYPPKK---IVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLL 212 (365)
T ss_pred cCeEEeccHHHHHHHHHc-CCChhh---eeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHH
Confidence 678899999999988764 322333 779999999876654322 0
Q ss_pred -----------cccccccccHHHHHHHHHHHH-HcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhh
Q 036860 49 -----------GCDKLLRENVEYLEELKSLAE-RNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMA 116 (159)
Q Consensus 49 -----------~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama 116 (159)
.+...+.|.+.....+..... ..++.+++.++|.. +++..+|+.||++++||..|++|++++|||+
T Consensus 213 ~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 290 (365)
T cd03807 213 RAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMA 290 (365)
T ss_pred HHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHh
Confidence 222334566666666666666 77888899999976 5689999999999999999999999999999
Q ss_pred cCCcEEEeCCCCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 117 AYKPVSACDSGGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 117 ~G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
||+|||+++.++..+++.+ ++++++|.+++++++.++++++++
T Consensus 291 ~g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (365)
T cd03807 291 CGLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLADPALRQALGEAA 343 (365)
T ss_pred cCCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 9999999999999998875 899999999999998888887653
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.87 E-value=1.4e-21 Score=141.74 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=119.8
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----C----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----C---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----~---------------------------- 48 (159)
+|.++++|+..++.+.+.......+ .+.++++++|...+.+... .
T Consensus 139 ~d~ii~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~ 216 (359)
T cd03808 139 TDKVIFQNEDDRDLALKLGIIKKKK--TVLIPGSGVDLDRFSPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAK 216 (359)
T ss_pred ccEEEEcCHHHHHHHHHhcCCCcCc--eEEecCCCCChhhcCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhc
Confidence 6899999999999998765432122 3667888899877655432 1
Q ss_pred --cccccccccHHHHHHHHHH-HHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 49 --GCDKLLRENVEYLEELKSL-AERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 49 --~~~~~i~~~~~~~~~~~~~-~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.+...+.|.+......... +...+..++|.|+|+ .+++.++|+.||++++|+..|++|++++|||++|+|||+++
T Consensus 217 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~ 294 (359)
T cd03808 217 GPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATD 294 (359)
T ss_pred CCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEec
Confidence 1223344555443333332 556667788999999 46789999999999999999999999999999999999999
Q ss_pred CCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 126 SGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 126 ~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
.++..+++.+ ++++++|.++++|++.+++++++|
T Consensus 295 ~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03808 295 VPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAA 340 (359)
T ss_pred CCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999998874 889999999999999998887753
No 56
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.87 E-value=3.1e-21 Score=141.11 Aligned_cols=92 Identities=26% Similarity=0.343 Sum_probs=82.6
Q ss_pred HHHHcCCCCcEEEccC-CCHHHHHHHHHhCcEEEeCCCCC--CCccHHHHhhhcCCcEEEeCCCCCceeecc--------
Q 036860 67 LAERNGMSDRVNFITS-CSTTERNALLFECLCVFYTPKDE--HFGIVPLEAMAAYKPVSACDSGGPVETIKN-------- 135 (159)
Q Consensus 67 ~~~~~~~~~~v~~~g~-~~~~~l~~~~~~a~~~i~~s~~e--~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-------- 135 (159)
++++.++.++|.|+|. ++.+++..+|+.||++++||..| ++|++++|||++|+|||+++.++ .+.+.+
T Consensus 239 ~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~ 317 (366)
T cd03822 239 LAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVP 317 (366)
T ss_pred HHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEc
Confidence 3777888889999987 99999999999999999999999 99999999999999999999988 454433
Q ss_pred ----HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 136 ----EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 136 ----~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
++++++|..+++|++.+++|+++|
T Consensus 318 ~~d~~~~~~~l~~l~~~~~~~~~~~~~~ 345 (366)
T cd03822 318 PGDPAALAEAIRRLLADPELAQALRARA 345 (366)
T ss_pred CCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 899999999999999999888764
No 57
>PLN00142 sucrose synthase
Probab=99.87 E-value=8.3e-22 Score=154.80 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCCcEEEccCCC----HHHHHHHHH-hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-
Q 036860 62 EELKSLAERNGMSDRVNFITSCS----TTERNALLF-ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN- 135 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~----~~~l~~~~~-~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~- 135 (159)
..+.++++++++.++|.|+|.+. ..++..+++ .+|+|++||.+|+||++++|||+||+|||+|+.||..|++.+
T Consensus 629 ~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG 708 (815)
T PLN00142 629 KKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDG 708 (815)
T ss_pred HHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCC
Confidence 45778899999999999998643 466777777 479999999999999999999999999999999999999977
Q ss_pred -----------HHHHHHHHHH----hcCHHHHHHhhhcC
Q 036860 136 -----------EEFSLSMAKL----IQEPQMAKNMGENA 159 (159)
Q Consensus 136 -----------~~l~~~i~~l----~~~~~~~~~~~~~a 159 (159)
++++++|.++ ++|++.+++|+++|
T Consensus 709 ~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 709 VSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7888887654 57999999998864
No 58
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.87 E-value=8.7e-23 Score=144.84 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=116.6
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC-------------------c-------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC-------------------G------------- 49 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~-------------------~------------- 49 (159)
.|++||+|...++...-.-...+.+ +.+|||.++.+.|.|.... |
T Consensus 146 id~~IcVshtskentvlr~~L~p~k---vsvIPnAv~~~~f~P~~~~~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~ 222 (426)
T KOG1111|consen 146 IDRIICVSHTSKENTVLRGALAPAK---VSVIPNAVVTHTFTPDAADKPSADIITIVVASRLVYRKGIDLLLEIIPSVCD 222 (426)
T ss_pred CCcEEEEeecCCCceEEEeccCHhH---eeeccceeeccccccCccccCCCCeeEEEEEeeeeeccchHHHHHHHHHHHh
Confidence 4788998887766443221223333 7799999999999984332 2
Q ss_pred ----ccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 50 ----CDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 50 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
....+.|+|+....++++.+++.+++++.++|.++++++.+.|.+-|+|++||..|.|+++++||++||+||+++.
T Consensus 223 ~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 223 KHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred cCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 2233569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecc----------HHHHHHHHHHh
Q 036860 126 SGGPVETIKN----------EEFSLSMAKLI 146 (159)
Q Consensus 126 ~~~~~e~i~~----------~~l~~~i~~l~ 146 (159)
.||.+|++.+ +++++++.+.+
T Consensus 303 VGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai 333 (426)
T KOG1111|consen 303 VGGIPEVLPEDMITLGEPGPDDLVGAVEKAI 333 (426)
T ss_pred cCCccccCCccceeccCCChHHHHHHHHHHH
Confidence 9999999987 55555555444
No 59
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.87 E-value=4.5e-21 Score=140.61 Aligned_cols=154 Identities=27% Similarity=0.274 Sum_probs=124.3
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC---------CC-----------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH---------SC----------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~---------~~----------------------- 48 (159)
.+|.++++|+..++.+. .++....+ +.+++||++...+.+.. ..
T Consensus 165 ~~d~vi~~s~~~~~~~~-~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 240 (394)
T cd03794 165 RADAIVVISPGMREYLV-RRGVPPEK---ISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLE 240 (394)
T ss_pred cCCEEEEECHHHHHHHH-hcCCCcCc---eEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHHHH
Confidence 37999999999999887 33333333 78999999877655432 10
Q ss_pred ---------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCC-----ccHHHHh
Q 036860 49 ---------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHF-----GIVPLEA 114 (159)
Q Consensus 49 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~-----g~~~lEa 114 (159)
.+...+.|.+.....+.+.+...+. ++|.++|+++.+++.++|+.||++++|+..|++ |++++||
T Consensus 241 ~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea 319 (394)
T cd03794 241 AAALLKDRPDIRFLIVGDGPEKEELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEY 319 (394)
T ss_pred HHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHH
Confidence 1334455777777777777666665 579999999999999999999999999998865 7789999
Q ss_pred hhcCCcEEEeCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 115 MAAYKPVSACDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 115 ma~G~Pvi~~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|++|+|||+++.++..+.+.+ ++++++|.++++|++.+++|+++|
T Consensus 320 ~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 376 (394)
T cd03794 320 MAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENG 376 (394)
T ss_pred HHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999999999999998888765 899999999999999999988764
No 60
>PHA01633 putative glycosyl transferase group 1
Probab=99.87 E-value=8.2e-21 Score=137.53 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=101.1
Q ss_pred cEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC--------c--c--------ccccc---ccHHHH
Q 036860 3 DVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------G--C--------DKLLR---ENVEYL 61 (159)
Q Consensus 3 d~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------~--~--------~~~i~---~~~~~~ 61 (159)
+.+|++|+++++.+++. +... ..++++|+|++.|.+.... + + ..++. |-....
T Consensus 94 ~~vIavS~~t~~~L~~~-G~~~-----~i~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI 167 (335)
T PHA01633 94 VKFIPNSKFSAENLQEV-GLQV-----DLPVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLML 167 (335)
T ss_pred CEEEeCCHHHHHHHHHh-CCCC-----ceeeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHH
Confidence 67899999999999864 3211 1257789998877654210 0 0 00000 000000
Q ss_pred HHH--------------------HHHHHHcCCCCcEEEc---cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 62 EEL--------------------KSLAERNGMSDRVNFI---TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 62 ~~~--------------------~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
+.+ ....++++++++|+|+ |+++.+++.++|+.||++++||..|+||++++|||+||
T Consensus 168 ~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G 247 (335)
T PHA01633 168 QVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMG 247 (335)
T ss_pred HHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcC
Confidence 111 1233455677889998 56688999999999999999999999999999999999
Q ss_pred CcEEEeCCCCCceeec---------------------------c---HHHHHHHHHHhc--CHHHH
Q 036860 119 KPVSACDSGGPVETIK---------------------------N---EEFSLSMAKLIQ--EPQMA 152 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~---------------------------~---~~l~~~i~~l~~--~~~~~ 152 (159)
+|||+++.++..|+.+ + ++++++|..++. +++++
T Consensus 248 ~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~~~~ 313 (335)
T PHA01633 248 TPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQDREER 313 (335)
T ss_pred CCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccChhhh
Confidence 9999999998888533 1 899999998854 44443
No 61
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.87 E-value=4.4e-21 Score=141.89 Aligned_cols=108 Identities=27% Similarity=0.284 Sum_probs=90.5
Q ss_pred ccccccHH-----HHHHHHHHHHHcCCCCcEEEccCC--CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 52 KLLRENVE-----YLEELKSLAERNGMSDRVNFITSC--STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 52 ~~i~~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~--~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
..+.|+++ ....++++.+..+..++|.|+|.. +++++..+|+.||++++||..||||++++|||+||+|||++
T Consensus 224 l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s 303 (372)
T cd03792 224 LVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAG 303 (372)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEc
Confidence 34556553 223345555556677789999987 88999999999999999999999999999999999999999
Q ss_pred CCCCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 125 DSGGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 125 ~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+.++..+.+.+ ++++.+|.+++++++++++|+++|
T Consensus 304 ~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a 348 (372)
T cd03792 304 PVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANA 348 (372)
T ss_pred CCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999988865 889999999999999999988764
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.86 E-value=6.6e-21 Score=146.55 Aligned_cols=136 Identities=16% Similarity=0.135 Sum_probs=107.9
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC---------------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC--------------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~--------------------------------- 48 (159)
||.++++|..+++ + + .. .....+|||++.|.+..+.
T Consensus 499 cD~VIaPS~atq~-L----~---~~---vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeA 567 (794)
T PLN02501 499 CHKVLRLSAATQD-L----P---KS---VICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDL 567 (794)
T ss_pred CCEEEcCCHHHHH-h----c---cc---ceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHH
Confidence 7999999977773 3 1 11 1122269999988775321
Q ss_pred ---------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC
Q 036860 49 ---------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK 119 (159)
Q Consensus 49 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~ 119 (159)
++...+.|+|+..+.+++++.++++ +|.|+|+.++. ..+|+.+|+|++||..|+||++++||||||+
T Consensus 568 la~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL--~V~FLG~~dd~--~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl 643 (794)
T PLN02501 568 LAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDL--NLNFLKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAMGK 643 (794)
T ss_pred HHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCC--EEEecCCCCCH--HHHHHhCCEEEECCCcccchHHHHHHHHcCC
Confidence 2345577999999999999998887 48999998654 5899999999999999999999999999999
Q ss_pred cEEEeCCCCCceeecc----------HHHHHHHHHHhcCHHHHH
Q 036860 120 PVSACDSGGPVETIKN----------EEFSLSMAKLIQEPQMAK 153 (159)
Q Consensus 120 Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~ 153 (159)
|||+++.++... +.+ ++|+++|.++++++..+.
T Consensus 644 PVVATd~pG~e~-V~~g~nGll~~D~EafAeAI~~LLsd~~~rl 686 (794)
T PLN02501 644 FVVCADHPSNEF-FRSFPNCLTYKTSEDFVAKVKEALANEPQPL 686 (794)
T ss_pred CEEEecCCCCce-EeecCCeEecCCHHHHHHHHHHHHhCchhhh
Confidence 999999988544 432 999999999999776443
No 63
>PLN02275 transferase, transferring glycosyl groups
Probab=99.85 E-value=1.3e-20 Score=139.48 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=108.8
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC--------CC------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH--------SC------------------------ 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~--------~~------------------------ 48 (159)
.||.++++|+.+++.+.+.++. ++.+++|+++ +.|.+.. ..
T Consensus 165 ~ad~ii~~S~~~~~~l~~~~g~------~i~vi~n~~~-~~f~~~~~~~~~~~~~~~~i~~~grl~~~k~~~~li~a~~~ 237 (371)
T PLN02275 165 MADGHLCVTKAMQHELDQNWGI------RATVLYDQPP-EFFRPASLEIRLRPNRPALVVSSTSWTPDEDFGILLEAAVM 237 (371)
T ss_pred hCCEEEECCHHHHHHHHHhcCC------CeEEECCCCH-HHcCcCCchhcccCCCcEEEEEeCceeccCCHHHHHHHHHH
Confidence 3799999999999998775443 2568888843 3333211 00
Q ss_pred -----------------------cccccccccHHHHHHHHHHHHHcCCCCcEEEcc-CCCHHHHHHHHHhCcEEEeCCC-
Q 036860 49 -----------------------GCDKLLRENVEYLEELKSLAERNGMSDRVNFIT-SCSTTERNALLFECLCVFYTPK- 103 (159)
Q Consensus 49 -----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~l~~~~~~a~~~i~~s~- 103 (159)
+....+.|+|+..++++++++++++++ +.|++ +++.+++..+|+.||++++|+.
T Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s 316 (371)
T PLN02275 238 YDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADLGVSLHTS 316 (371)
T ss_pred HHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCEEEEeccc
Confidence 122445699999999999999999975 88765 7999999999999999997632
Q ss_pred --CCCCccHHHHhhhcCCcEEEeCCCCCceeecc----------HHHHHHHHHHh
Q 036860 104 --DEHFGIVPLEAMAAYKPVSACDSGGPVETIKN----------EEFSLSMAKLI 146 (159)
Q Consensus 104 --~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~ 146 (159)
.|++|++++||||||+|||+++.++..|++.+ ++++++|.+++
T Consensus 317 ~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 317 SSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred cccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 48899999999999999999999999999977 78888887663
No 64
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.85 E-value=1.9e-21 Score=129.42 Aligned_cols=111 Identities=31% Similarity=0.478 Sum_probs=100.6
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
.+...+.|++.+...+...++..++.++++|+|+++.+++.++|+.||++++||..|++|++++|||++|+|||+++.++
T Consensus 47 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~ 126 (172)
T PF00534_consen 47 NYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGG 126 (172)
T ss_dssp TEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTH
T ss_pred CeEEEEEcccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccceeeccccC
Confidence 45666778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeecc------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 129 PVETIKN------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 129 ~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
..+++.+ ++++++|.+++++++.++.|+++|
T Consensus 127 ~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 127 NNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp HHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9988877 899999999999999999999874
No 65
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.84 E-value=1.3e-20 Score=140.78 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=88.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC---C----C-Ccccccccc-----cHHHHHHHHHHH
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP---H----S-CGCDKLLRE-----NVEYLEELKSLA 68 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~---~----~-~~~~~~i~~-----~~~~~~~~~~~~ 68 (159)
++.+|++|++.++.+.+.++. . ++.+|+||+|++.+.+. . . ........+ .+.-...+.+.+
T Consensus 191 ~~~iV~~S~~l~~~~~~~~~~--~---~i~vI~NGid~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~ 265 (405)
T PRK10125 191 GCQFISPSQHVADAFNSLYGP--G---RCRIINNGIDMATEAILAELPPVRETQGKPKIAVVAHDLRYDGKTDQQLVREM 265 (405)
T ss_pred CcEEEEcCHHHHHHHHHHcCC--C---CEEEeCCCcCcccccccccccccccCCCCCEEEEEEeccccCCccHHHHHHHH
Confidence 478999999999998776552 2 27799999996432111 0 0 101111111 111112222222
Q ss_pred HHcC--------------CCCcEEEccCC-CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceee
Q 036860 69 ERNG--------------MSDRVNFITSC-STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETI 133 (159)
Q Consensus 69 ~~~~--------------~~~~v~~~g~~-~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i 133 (159)
..++ ...++.++|+. +..++.++|+.||++++||..|+||++++||||||+|||+|+.||.+|++
T Consensus 266 ~~l~~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv 345 (405)
T PRK10125 266 MALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL 345 (405)
T ss_pred HhCCCCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE
Confidence 2221 11357778876 45788999999999999999999999999999999999999999999999
Q ss_pred cc
Q 036860 134 KN 135 (159)
Q Consensus 134 ~~ 135 (159)
.+
T Consensus 346 ~~ 347 (405)
T PRK10125 346 QK 347 (405)
T ss_pred eC
Confidence 76
No 66
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.83 E-value=7.1e-20 Score=137.42 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=103.4
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC--------------------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC-------------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~-------------------------------- 48 (159)
+||.++++|..+.+ +.+. .....+|||.+.|.+....
T Consensus 180 ~~d~vi~pS~~~~~-l~~~----------~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~ 248 (462)
T PLN02846 180 YCHKVIRLSAATQD-YPRS----------IICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLK 248 (462)
T ss_pred hcCEEEccCHHHHH-HhhC----------EEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHH
Confidence 37899999986655 3321 3334478888776544210
Q ss_pred ----------cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 49 ----------GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 49 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
++...+.|+|+..++++++++++++..++ |.|....+ ++|..+|+|++||..|++|++++||||||
T Consensus 249 a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~v-f~G~~~~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G 324 (462)
T PLN02846 249 LLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRV-YPGRDHAD---PLFHDYKVFLNPSTTDVVCTTTAEALAMG 324 (462)
T ss_pred HHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEE-ECCCCCHH---HHHHhCCEEEECCCcccchHHHHHHHHcC
Confidence 33456779999999999999998876444 77875443 79999999999999999999999999999
Q ss_pred CcEEEeCCCCCceeecc----------HHHHHHHHHHhcC
Q 036860 119 KPVSACDSGGPVETIKN----------EEFSLSMAKLIQE 148 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~ 148 (159)
+|||+++.++ .+++.+ ++|++++.+++++
T Consensus 325 ~PVVa~~~~~-~~~v~~~~ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 325 KIVVCANHPS-NEFFKQFPNCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred CcEEEecCCC-cceeecCCceEecCCHHHHHHHHHHHHcc
Confidence 9999999988 487754 9999999999884
No 67
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.81 E-value=1e-18 Score=130.28 Aligned_cols=156 Identities=37% Similarity=0.538 Sum_probs=127.0
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-----------C----------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-----------C---------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-----------~---------------------- 48 (159)
+|++++.|.+++..+...+......+ +.++++++|...+.+.-. .
T Consensus 210 ~~~~~~ns~~~~~~f~~~~~~L~~~d--~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd 287 (495)
T KOG0853|consen 210 AWKILVNSYFTKRQFKATFVSLSNSD--ITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKD 287 (495)
T ss_pred cceEecchhhhhhhhhhhhhhcCCCC--cceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCC
Confidence 68899999999999988776655443 669999998665442100 0
Q ss_pred -------------------------------cccccccccHHHHHHHHHHHHHcCC-CCcEEEccCCCHHHHHHHHHhCc
Q 036860 49 -------------------------------GCDKLLRENVEYLEELKSLAERNGM-SDRVNFITSCSTTERNALLFECL 96 (159)
Q Consensus 49 -------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~a~ 96 (159)
|++.....+..+..++..+++++++ .+.+.|+...++.+-..+++.+.
T Consensus 288 ~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~ 367 (495)
T KOG0853|consen 288 QDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTK 367 (495)
T ss_pred ceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcc
Confidence 2333344456789999999999988 46788888888887778888888
Q ss_pred EEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc--------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 97 CVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN--------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 97 ~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~--------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
..+.....|.||++++|||+||+||++++.||..|++.+ ..+++++.++..||+.+.+|+++|
T Consensus 368 ~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 368 GVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred eEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888766669999999999999999999999999999998 369999999999999999999875
No 68
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.79 E-value=3.4e-18 Score=129.12 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=109.8
Q ss_pred ccEEEEcCHhhHHHHHHHhhhh------------hccCceeEEEecCCccccccCCC------------------CC---
Q 036860 2 ADVILVDSKFTANTFADTFKKL------------HARGIRLVVLYLAVNVYQFDKPH------------------SC--- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~------------~~~~i~~~vi~~~vd~~~~~~~~------------------~~--- 48 (159)
||.|-+.+....+++....... ..+.+++.++|+|||++.|.+.. ..
T Consensus 184 ~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl 263 (456)
T TIGR02400 184 YDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLII 263 (456)
T ss_pred CCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEE
Confidence 6888888888877776543211 12445688999999998875421 01
Q ss_pred --------------------------cc----ccccc-----ccHHHHHHHHHHHHHc----C----C---CCcEEEccC
Q 036860 49 --------------------------GC----DKLLR-----ENVEYLEELKSLAERN----G----M---SDRVNFITS 82 (159)
Q Consensus 49 --------------------------~~----~~~i~-----~~~~~~~~~~~~~~~~----~----~---~~~v~~~g~ 82 (159)
.+ ..++. ++++....+++.++++ + . .+.+.+.|.
T Consensus 264 ~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~ 343 (456)
T TIGR02400 264 GVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRS 343 (456)
T ss_pred EccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCC
Confidence 00 01111 3445555555555443 1 1 122344578
Q ss_pred CCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc----EEEeCCCCCceeecc---------HHHHHHHHHHhc-C
Q 036860 83 CSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP----VSACDSGGPVETIKN---------EEFSLSMAKLIQ-E 148 (159)
Q Consensus 83 ~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P----vi~~~~~~~~e~i~~---------~~l~~~i~~l~~-~ 148 (159)
++.+++..+|+.||++++||..||||++++||||||+| +|+|+.+|..+.+.. ++++++|.++++ +
T Consensus 344 ~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~~gllVnP~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 344 YDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARALTMP 423 (456)
T ss_pred CCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhCCcEEECCCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999 999998887666654 999999999998 5
Q ss_pred HHHHHHhhh
Q 036860 149 PQMAKNMGE 157 (159)
Q Consensus 149 ~~~~~~~~~ 157 (159)
+++++++.+
T Consensus 424 ~~er~~r~~ 432 (456)
T TIGR02400 424 LEEREERHR 432 (456)
T ss_pred HHHHHHHHH
Confidence 556655443
No 69
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.78 E-value=7.1e-19 Score=130.32 Aligned_cols=135 Identities=17% Similarity=0.076 Sum_probs=98.2
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC-------------C--------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS-------------C-------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~-------------~-------------------- 48 (159)
||.|+++|+..++.+.+. + .+ +.+++||+|.+.|.+... .
T Consensus 154 ad~vi~~S~~l~~~~~~~-~---~~---i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~l 226 (373)
T cd04950 154 ADLVFTTSPSLYEAKRRL-N---PN---VVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEAL 226 (373)
T ss_pred CCEEEECCHHHHHHHhhC-C---CC---EEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHH
Confidence 799999999999887664 2 22 779999999887765321 0
Q ss_pred -----cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC-----CCCccHHHHhhhcC
Q 036860 49 -----GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD-----EHFGIVPLEAMAAY 118 (159)
Q Consensus 49 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~-----e~~g~~~lEama~G 118 (159)
.+...+.|.++...... .....+||+|+|+++++++..+++.+|++++|+.. +++|++++||||||
T Consensus 227 a~~~p~~~~vliG~~~~~~~~~----~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G 302 (373)
T cd04950 227 AKARPDWSFVLIGPVDVSIDPS----ALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAG 302 (373)
T ss_pred HHHCCCCEEEEECCCcCccChh----HhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccC
Confidence 22233344441111111 11113689999999999999999999999999863 35799999999999
Q ss_pred CcEEEeCCCCCceeecc--------HHHHHHHHHHhc
Q 036860 119 KPVSACDSGGPVETIKN--------EEFSLSMAKLIQ 147 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~--------~~l~~~i~~l~~ 147 (159)
+|||+++.++..+.... ++|+++|.+++.
T Consensus 303 ~PVVat~~~~~~~~~~~~~~~~~d~~~~~~ai~~~l~ 339 (373)
T cd04950 303 KPVVATPLPEVRRYEDEVVLIADDPEEFVAAIEKALL 339 (373)
T ss_pred CCEEecCcHHHHhhcCcEEEeCCCHHHHHHHHHHHHh
Confidence 99999987665544332 999999999654
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.76 E-value=5.9e-18 Score=128.35 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=68.9
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc----EEEeCCCCCceeecc---------HHHHHHHH
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP----VSACDSGGPVETIKN---------EEFSLSMA 143 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P----vi~~~~~~~~e~i~~---------~~l~~~i~ 143 (159)
+.+.|.++.+++..+|+.||++++||..||||++++|||+||+| +|+|+.+|..+...+ ++++++|.
T Consensus 343 ~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~~~g~lv~p~d~~~la~ai~ 422 (460)
T cd03788 343 RYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEELSGALLVNPYDIDEVADAIH 422 (460)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhhcCCCEEECCCCHHHHHHHHH
Confidence 34458899999999999999999999999999999999999999 999988776665433 89999999
Q ss_pred HHhcCH-HHHHHhhh
Q 036860 144 KLIQEP-QMAKNMGE 157 (159)
Q Consensus 144 ~l~~~~-~~~~~~~~ 157 (159)
++++++ ++++++++
T Consensus 423 ~~l~~~~~e~~~~~~ 437 (460)
T cd03788 423 RALTMPLEERRERHR 437 (460)
T ss_pred HHHcCCHHHHHHHHH
Confidence 999854 56666554
No 71
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=2.5e-17 Score=116.99 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=123.1
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC-----CC----------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH-----SC---------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~-----~~---------------------------- 48 (159)
||.++++|.|+.+++.+.|+. . ++.+++|+++++.+.... +.
T Consensus 223 ad~vm~NssWT~nHI~qiW~~--~---~~~iVyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~ 297 (465)
T KOG1387|consen 223 ADIVMTNSSWTNNHIKQIWQS--N---TCSIVYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNE 297 (465)
T ss_pred ceEEEecchhhHHHHHHHhhc--c---ceeEEcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcC
Confidence 799999999999999998875 2 377999998876433210 00
Q ss_pred -------ccccccc------ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh
Q 036860 49 -------GCDKLLR------ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM 115 (159)
Q Consensus 49 -------~~~~~i~------~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam 115 (159)
...+.+. .|-++...++.++.++.++++|.|.-.+|.+++.++|+.|.+.+....+|.||+.+.|+|
T Consensus 298 pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyM 377 (465)
T KOG1387|consen 298 PLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYM 377 (465)
T ss_pred chhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHH
Confidence 1111222 345667889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEeCCCCCc-eeecc-------------HHHHHHHHHHhc-CHHHHHHhhhcC
Q 036860 116 AAYKPVSACDSGGPV-ETIKN-------------EEFSLSMAKLIQ-EPQMAKNMGENA 159 (159)
Q Consensus 116 a~G~Pvi~~~~~~~~-e~i~~-------------~~l~~~i~~l~~-~~~~~~~~~~~a 159 (159)
|+|+-+|+.+.||.. +++.+ ++.++++.++.. |+++|..|+++|
T Consensus 378 AAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~A 436 (465)
T KOG1387|consen 378 AAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNA 436 (465)
T ss_pred hcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999988888876654 44444 999999999987 788787777654
No 72
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.75 E-value=1.2e-17 Score=126.93 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCC----ceeecc--------------------HHHHHHH
Q 036860 87 ERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGP----VETIKN--------------------EEFSLSM 142 (159)
Q Consensus 87 ~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~----~e~i~~--------------------~~l~~~i 142 (159)
+..++++.||++++||.+||||++++|||+||+|||+|+.+|+ .|.+.+ ++++++|
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m 546 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYM 546 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999888 454431 8888889
Q ss_pred HHHhcCHHHHHHhhh
Q 036860 143 AKLIQEPQMAKNMGE 157 (159)
Q Consensus 143 ~~l~~~~~~~~~~~~ 157 (159)
.++++. ..++++.+
T Consensus 547 ~~~~~~-~~r~~~~~ 560 (590)
T cd03793 547 YEFCQL-SRRQRIIQ 560 (590)
T ss_pred HHHhCC-cHHHHHHH
Confidence 888854 34444443
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.71 E-value=2.4e-16 Score=118.72 Aligned_cols=152 Identities=19% Similarity=0.163 Sum_probs=106.6
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecC-CccccccC-------------CCCC-------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLA-VNVYQFDK-------------PHSC------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~-vd~~~~~~-------------~~~~------------------- 48 (159)
+|.|+++|+..++.+.+. +. +.. +.+++|. +|...... ....
T Consensus 179 ~d~ii~~S~~~~~~l~~~-g~-~~~---i~vi~n~~~d~~~~~~~~~~~~~~r~~~~~~~~vil~~~~~~~~~~~ll~A~ 253 (425)
T PRK05749 179 IDLVLAQSEEDAERFLAL-GA-KNE---VTVTGNLKFDIEVPPELAARAATLRRQLAPNRPVWIAASTHEGEEELVLDAH 253 (425)
T ss_pred CCEEEECCHHHHHHHHHc-CC-CCC---cEecccccccCCCChhhHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHHHHH
Confidence 689999999999998763 32 222 3466663 33221110 1111
Q ss_pred --------cccccccccHHHH-HHHHHHHHHcCCCCcEEEccCC------------CHHHHHHHHHhCcEEEe-CCCCCC
Q 036860 49 --------GCDKLLRENVEYL-EELKSLAERNGMSDRVNFITSC------------STTERNALLFECLCVFY-TPKDEH 106 (159)
Q Consensus 49 --------~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~g~~------------~~~~l~~~~~~a~~~i~-~s~~e~ 106 (159)
+....+.|+++.. .++++++++.++. .+.|.|.. ...++..+|+.||++++ +|..|+
T Consensus 254 ~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~-~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~ 332 (425)
T PRK05749 254 RALLKQFPNLLLILVPRHPERFKEVEELLKKAGLS-YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKR 332 (425)
T ss_pred HHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCc-EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCC
Confidence 2334566887765 7899999988875 34444421 13589999999999666 666799
Q ss_pred CccHHHHhhhcCCcEEEeCC-CCCceeec------------c-HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 107 FGIVPLEAMAAYKPVSACDS-GGPVETIK------------N-EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 107 ~g~~~lEama~G~Pvi~~~~-~~~~e~i~------------~-~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|.+++|||+||+|||+++. ++..+... + ++++++|.++++|++.+++|+++|
T Consensus 333 ~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a 399 (425)
T PRK05749 333 GGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAG 399 (425)
T ss_pred CCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999753 33333322 1 899999999999999999999864
No 74
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.67 E-value=9.7e-16 Score=113.99 Aligned_cols=145 Identities=13% Similarity=0.039 Sum_probs=100.3
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCC--------------C------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHS--------------C------------------ 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~--------------~------------------ 48 (159)
.+|.++++|+..++.+.+. +..+++ +.+++++++.+++.+... .
T Consensus 150 ~~d~~~~~s~~~~~~l~~~-g~~~~k---i~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li 225 (382)
T PLN02605 150 GVTRCFCPSEEVAKRALKR-GLEPSQ---IRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETA 225 (382)
T ss_pred CCCEEEECCHHHHHHHHHc-CCCHHH---EEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHH
Confidence 4799999999999888764 444444 678888887654432211 1
Q ss_pred ----c-c-----------cccccccH-HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHH
Q 036860 49 ----G-C-----------DKLLRENV-EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVP 111 (159)
Q Consensus 49 ----~-~-----------~~~i~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~ 111 (159)
. . ...+.|.+ ...+.+++. ....+|+|+|+++ ++.++|+.||+++.++ .|+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~----~~~~~v~~~G~~~--~~~~l~~aaDv~V~~~----g~~ti 295 (382)
T PLN02605 226 RALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESR----DWKIPVKVRGFVT--NMEEWMGACDCIITKA----GPGTI 295 (382)
T ss_pred HHHHHhhccccccCCCceEEEEECCCHHHHHHHHhh----cccCCeEEEeccc--cHHHHHHhCCEEEECC----CcchH
Confidence 0 0 01123433 233334332 2234699999995 6899999999999854 47899
Q ss_pred HHhhhcCCcEEEeCC------CCCceeec--------c-HHHHHHHHHHhcC-HHHHHHhhhcC
Q 036860 112 LEAMAAYKPVSACDS------GGPVETIK--------N-EEFSLSMAKLIQE-PQMAKNMGENA 159 (159)
Q Consensus 112 lEama~G~Pvi~~~~------~~~~e~i~--------~-~~l~~~i~~l~~~-~~~~~~~~~~a 159 (159)
+|||+||+|+|+++. ++...+.. + ++++++|.++++| ++.+++|++++
T Consensus 296 ~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~ 359 (382)
T PLN02605 296 AEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENA 359 (382)
T ss_pred HHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999983 22222222 2 9999999999998 99999988763
No 75
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.65 E-value=2.6e-15 Score=120.02 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHHHcC--CCC--------cEE-EccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc----
Q 036860 56 ENVEYLEELKSLAERNG--MSD--------RVN-FITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP---- 120 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~--~~~--------~v~-~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P---- 120 (159)
++++....+++.++++. +.. .|+ +.+.++.+++..+|+.||++++||..||||++++|||+||+|
T Consensus 326 ~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gv 405 (797)
T PLN03063 326 NDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGV 405 (797)
T ss_pred CchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCC
Confidence 35555566666665552 211 133 335889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeecc----------HHHHHHHHHHhc-CHHHHHHhh
Q 036860 121 VSACDSGGPVETIKN----------EEFSLSMAKLIQ-EPQMAKNMG 156 (159)
Q Consensus 121 vi~~~~~~~~e~i~~----------~~l~~~i~~l~~-~~~~~~~~~ 156 (159)
+|.|..+|..+.++. ++++++|.++++ +++++++..
T Consensus 406 lVlSe~~G~~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~ 452 (797)
T PLN03063 406 LVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETRH 452 (797)
T ss_pred EEeeCCcCchhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999998887666642 999999999999 777666543
No 76
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.63 E-value=3e-15 Score=109.84 Aligned_cols=141 Identities=18% Similarity=0.065 Sum_probs=100.6
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC---------CC-----------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH---------SC----------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~---------~~----------------------- 48 (159)
++|.++++|+..++. + .+. ++.+++||+|.+.+.+.. ..
T Consensus 134 ~~~~vi~~s~~~~~~----~--~~~---~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~ 204 (350)
T cd03785 134 FADRVALSFPETAKY----F--PKD---KAVVTGNPVREEILALDRERARLGLRPGKPTLLVFGGSQGARAINEAVPEAL 204 (350)
T ss_pred hhCEEEEcchhhhhc----C--CCC---cEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHH
Confidence 378999999988765 1 122 377999999977654321 11
Q ss_pred ------ccc-ccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcE
Q 036860 49 ------GCD-KLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPV 121 (159)
Q Consensus 49 ------~~~-~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pv 121 (159)
... ..+.|.+ ..+.+++.++++ .++|+|.|++ +++.++|+.||+++.++. +++++|||++|+|+
T Consensus 205 ~~l~~~~~~~~~i~G~g-~~~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pv 275 (350)
T cd03785 205 AELLRKRLQVIHQTGKG-DLEEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALGLPA 275 (350)
T ss_pred HHhhccCeEEEEEcCCc-cHHHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCE
Confidence 111 1133555 446666666654 3679999998 678999999999998652 68899999999999
Q ss_pred EEeCCCC-----------------Cceeec----c-HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 122 SACDSGG-----------------PVETIK----N-EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 122 i~~~~~~-----------------~~e~i~----~-~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|+++.++ ..-.+. + ++++++|.++++|++.+++|+++|
T Consensus 276 v~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 276 ILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9976432 122222 2 899999999999999999998764
No 77
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.61 E-value=2.4e-14 Score=106.41 Aligned_cols=146 Identities=19% Similarity=0.146 Sum_probs=100.0
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC-------------CCC-------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP-------------HSC------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~-------------~~~------------------- 48 (159)
.+|.+++.|+..++.+.+. +..+++ +.++.++++.....+. ...
T Consensus 147 ~ad~i~~~s~~~~~~l~~~-gi~~~k---i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li 222 (380)
T PRK13609 147 EVDRYFVATDHVKKVLVDI-GVPPEQ---VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELC 222 (380)
T ss_pred CCCEEEECCHHHHHHHHHc-CCChhH---EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHH
Confidence 4799999999999988763 433333 5566555542211100 011
Q ss_pred -------ccccccc-c-cHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC
Q 036860 49 -------GCDKLLR-E-NVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK 119 (159)
Q Consensus 49 -------~~~~~i~-~-~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~ 119 (159)
+....+. | ++...+.+++++++.+ ++|+|+|+++ ++.++|+.||+++. ++.|++++|||+||+
T Consensus 223 ~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~--~~v~~~g~~~--~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~ 294 (380)
T PRK13609 223 QSLMSVPDLQVVVVCGKNEALKQSLEDLQETNP--DALKVFGYVE--NIDELFRVTSCMIT----KPGGITLSEAAALGV 294 (380)
T ss_pred HHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCC--CcEEEEechh--hHHHHHHhccEEEe----CCCchHHHHHHHhCC
Confidence 1112222 4 3456777777776554 5799999985 57899999999885 355899999999999
Q ss_pred cEEEeC-CCCCc----ee---------ecc-HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 120 PVSACD-SGGPV----ET---------IKN-EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 120 Pvi~~~-~~~~~----e~---------i~~-~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
|+|+++ .++.. +. ..+ ++++++|.++++|++.+++|+++
T Consensus 295 PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~ 348 (380)
T PRK13609 295 PVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEA 348 (380)
T ss_pred CEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999976 44321 11 122 99999999999999999998865
No 78
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.59 E-value=1.3e-14 Score=106.22 Aligned_cols=143 Identities=15% Similarity=0.033 Sum_probs=96.0
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC--C--CC-------------------ccccccccc
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP--H--SC-------------------GCDKLLREN 57 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~--~--~~-------------------~~~~~i~~~ 57 (159)
.||.+|++|+.+++.+.+. +....+ +.++++..+.....+. . .. .....+.|+
T Consensus 123 ~aD~iI~~S~~~~~~l~~~-g~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~i~yaG~l~k~~~l~~~~~~~~l~i~G~ 198 (333)
T PRK09814 123 LADVLIVHSKKMKDRLVEE-GLTTDK---IIVQGIFDYLNDIELVKTPSFQKKINFAGNLEKSPFLKNWSQGIKLTVFGP 198 (333)
T ss_pred hCCEEEECCHHHHHHHHHc-CCCcCc---eEecccccccccccccccccCCceEEEecChhhchHHHhcCCCCeEEEECC
Confidence 3799999999999999764 322222 4455444332211111 0 00 112233344
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC-----------CCCCccHHHHhhhcCCcEEEeCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK-----------DEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~-----------~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
|+... ...++|+|+|+++.+++..+|+. ++.+.+.. .-.+|.++.++||||+|||+++.
T Consensus 199 g~~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~ 268 (333)
T PRK09814 199 NPEDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK 268 (333)
T ss_pred Ccccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC
Confidence 43222 23468999999999999999998 65554332 13567889999999999999999
Q ss_pred CCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 127 GGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 127 ~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
++..+++.+ +++++++..+ +++++++|++++
T Consensus 269 ~~~~~~V~~~~~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~ 309 (333)
T PRK09814 269 AAIADFIVENGLGFVVDSLEELPEIIDNI--TEEEYQEMVENV 309 (333)
T ss_pred ccHHHHHHhCCceEEeCCHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 999999987 7788888775 457788888764
No 79
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.56 E-value=2.1e-14 Score=105.26 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc-------eeec
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV-------ETIK 134 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~-------e~i~ 134 (159)
+.+++.++++++.+.+.|. .. ++.++|+.||+++.++ | +++++|||++|+|+|+++.++.. +++.
T Consensus 222 ~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~ 293 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE 293 (348)
T ss_pred HHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH
Confidence 5666666666654444444 22 7789999999999854 2 68999999999999998764311 2232
Q ss_pred c--------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 135 N--------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 135 ~--------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+ ++++++|.++++|++.+++|++++
T Consensus 294 ~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 294 DLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred HCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 2 889999999999999999998764
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.55 E-value=3.2e-14 Score=113.35 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=62.5
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC-----CcEEEeCCCCCceeecc--------HHHHHHH
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY-----KPVSACDSGGPVETIKN--------EEFSLSM 142 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G-----~Pvi~~~~~~~~e~i~~--------~~l~~~i 142 (159)
.+.|.|+++.+++..+|+.||++++||..||||++++|||+|| .||++...|+..++... ++++++|
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~~~llv~P~d~~~la~ai 422 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELAEALLVNPNDIEGIAAAI 422 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhCcCeEECCCCHHHHHHHH
Confidence 3567799999999999999999999999999999999999994 46777777766554332 9999999
Q ss_pred HHHhcCH
Q 036860 143 AKLIQEP 149 (159)
Q Consensus 143 ~~l~~~~ 149 (159)
.++++.+
T Consensus 423 ~~~l~~~ 429 (726)
T PRK14501 423 KRALEMP 429 (726)
T ss_pred HHHHcCC
Confidence 9999853
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.55 E-value=8.4e-14 Score=103.95 Aligned_cols=145 Identities=16% Similarity=0.078 Sum_probs=96.3
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCC-------------CCC-------------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKP-------------HSC------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~-------------~~~------------------- 48 (159)
++|.+++.|+.+++.+.+. +..+.+ +.++.++++..+..+. ...
T Consensus 147 ~~d~~~v~s~~~~~~l~~~-gi~~~k---i~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li 222 (391)
T PRK13608 147 YSTRYYVATKETKQDFIDV-GIDPST---VKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMI 222 (391)
T ss_pred CCCEEEECCHHHHHHHHHc-CCCHHH---EEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHH
Confidence 4799999999999988763 433333 5566666653222110 011
Q ss_pred --------ccccc-ccccH-HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC
Q 036860 49 --------GCDKL-LRENV-EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY 118 (159)
Q Consensus 49 --------~~~~~-i~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G 118 (159)
..... +.|.+ ...+.+.+. .+..++|+++|++ +++.++|+.||+++. .+.|++++|||++|
T Consensus 223 ~~~~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G 293 (391)
T PRK13608 223 TDILAKSANAQVVMICGKSKELKRSLTAK---FKSNENVLILGYT--KHMNEWMASSQLMIT----KPGGITISEGLARC 293 (391)
T ss_pred HHHHhcCCCceEEEEcCCCHHHHHHHHHH---hccCCCeEEEecc--chHHHHHHhhhEEEe----CCchHHHHHHHHhC
Confidence 01111 12332 223333332 3334579999998 468999999999996 34688999999999
Q ss_pred CcEEEeCC-CCCcee--------------ecc-HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 119 KPVSACDS-GGPVET--------------IKN-EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 119 ~Pvi~~~~-~~~~e~--------------i~~-~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+|+|+++. ++ .|. ..+ ++++++|.++++|++.+++|++++
T Consensus 294 ~PvI~~~~~pg-qe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (391)
T PRK13608 294 IPMIFLNPAPG-QELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTM 349 (391)
T ss_pred CCEEECCCCCC-cchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999863 33 221 122 889999999999999999998764
No 82
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.51 E-value=1.4e-13 Score=101.52 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=70.6
Q ss_pred cccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc----
Q 036860 55 RENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV---- 130 (159)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~---- 130 (159)
.|++.. +.+.+..+ .++. |.|+|++ +++.++|+.||+++.++. +.+++|||++|+|+|+++.++..
T Consensus 219 ~G~g~~-~~~~~~~~-~~~~--v~~~g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~ 288 (357)
T PRK00726 219 TGKGDL-EEVRAAYA-AGIN--AEVVPFI--DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQ 288 (357)
T ss_pred cCCCcH-HHHHHHhh-cCCc--EEEeehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcH
Confidence 355543 33443344 5542 8899998 577999999999998652 68999999999999998754211
Q ss_pred ----eeecc--------------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 131 ----ETIKN--------------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 131 ----e~i~~--------------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+.+.+ ++++++|.++++|++.+++|++++
T Consensus 289 ~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (357)
T PRK00726 289 TANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAA 335 (357)
T ss_pred HHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 12211 799999999999999999998763
No 83
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=9.1e-13 Score=99.71 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=112.7
Q ss_pred CccEEEEcCHhhHHHHH-HHhh-----hhhccCceeEEEecCCccccccCCCCC--------------------------
Q 036860 1 MADVILVDSKFTANTFA-DTFK-----KLHARGIRLVVLYLAVNVYQFDKPHSC-------------------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~-~~~~-----~~~~~~i~~~vi~~~vd~~~~~~~~~~-------------------------- 48 (159)
+||.|.++|....+.+. ..++ ....+.=++.-|.||+|.+.|.|....
T Consensus 208 ~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~g 287 (487)
T COG0297 208 YADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLG 287 (487)
T ss_pred eccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhC
Confidence 58999999998888776 2221 111111237899999999988776543
Q ss_pred --------------------cccc---------------ccc--ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHH
Q 036860 49 --------------------GCDK---------------LLR--ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNAL 91 (159)
Q Consensus 49 --------------------~~~~---------------~i~--~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~ 91 (159)
|++. .+. |+..+...+..+++.... ++.+.-..+..-...+
T Consensus 288 L~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i 365 (487)
T COG0297 288 LDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPG--RVLVVIGYDEPLAHLI 365 (487)
T ss_pred CCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHH
Confidence 1111 122 444667777777776653 6777666666667799
Q ss_pred HHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc--------------------HHHHHHHHHHhc---C
Q 036860 92 LFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN--------------------EEFSLSMAKLIQ---E 148 (159)
Q Consensus 92 ~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~--------------------~~l~~~i~~l~~---~ 148 (159)
++.+|++++||++|+||++-++||..|+++|+..+||+++.+.+ ++++.+|.+... +
T Consensus 366 ~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~ 445 (487)
T COG0297 366 YAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRA 445 (487)
T ss_pred HhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999984 677777765543 3
Q ss_pred -HHHHHHhhhc
Q 036860 149 -PQMAKNMGEN 158 (159)
Q Consensus 149 -~~~~~~~~~~ 158 (159)
+...+.+..+
T Consensus 446 ~~~~w~~~~~~ 456 (487)
T COG0297 446 PPLLWRKVQPN 456 (487)
T ss_pred CHHHHHHHHHh
Confidence 3335555443
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.48 E-value=2.8e-13 Score=100.26 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=69.6
Q ss_pred cCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe-CCCCCceeecc----------HHHH
Q 036860 71 NGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC-DSGGPVETIKN----------EEFS 139 (159)
Q Consensus 71 ~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~-~~~~~~e~i~~----------~~l~ 139 (159)
.+..++|+|+|.++..++..+++.||+++.+| |..++|||+||+|||++ +.++..+.+.. ++++
T Consensus 251 ~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g~~~lv~~d~~~i~ 325 (365)
T TIGR00236 251 LGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAGTNKLVGTDKENIT 325 (365)
T ss_pred hCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcCceEEeCCCHHHHH
Confidence 34456899999999999999999999999876 56689999999999996 55666555533 8999
Q ss_pred HHHHHHhcCHHHHHHhhhc
Q 036860 140 LSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 140 ~~i~~l~~~~~~~~~~~~~ 158 (159)
+++.++++|++.+++|+++
T Consensus 326 ~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 326 KAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred HHHHHHHhChHHHHHhhhc
Confidence 9999999999998888764
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.48 E-value=2.2e-13 Score=93.46 Aligned_cols=86 Identities=30% Similarity=0.319 Sum_probs=69.1
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccCC-CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITSC-STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
....+.|.+.........+...+..++|.++|++ +.+++..+++.||++++|+..|++|++++|||++|+|+|+++.++
T Consensus 136 ~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 136 LKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred eEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4444556666566665556667777899999998 445556666669999999999999999999999999999999999
Q ss_pred Cceeecc
Q 036860 129 PVETIKN 135 (159)
Q Consensus 129 ~~e~i~~ 135 (159)
..|++.+
T Consensus 216 ~~e~i~~ 222 (229)
T cd01635 216 PPEIVED 222 (229)
T ss_pred cceEEEC
Confidence 9987654
No 86
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.44 E-value=3.7e-12 Score=96.70 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHc-------CCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC----cEEEeCCCC
Q 036860 60 YLEELKSLAERN-------GMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK----PVSACDSGG 128 (159)
Q Consensus 60 ~~~~~~~~~~~~-------~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~----Pvi~~~~~~ 128 (159)
+..++++++.+. +..+.+.|.+.++.+++..+|+.||+++.+|..||++++..|+++|+. |+|.|..+|
T Consensus 340 l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG 419 (487)
T TIGR02398 340 LQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG 419 (487)
T ss_pred HHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc
Confidence 456667766665 344567888999999999999999999999999999999999999998 999999988
Q ss_pred Cceeecc---------HHHHHHHHHHhcCH
Q 036860 129 PVETIKN---------EEFSLSMAKLIQEP 149 (159)
Q Consensus 129 ~~e~i~~---------~~l~~~i~~l~~~~ 149 (159)
..+.+.. ++++++|.+.++.+
T Consensus 420 aa~~l~~AllVNP~d~~~~A~ai~~AL~m~ 449 (487)
T TIGR02398 420 AAVELKGALLTNPYDPVRMDETIYVALAMP 449 (487)
T ss_pred chhhcCCCEEECCCCHHHHHHHHHHHHcCC
Confidence 8888766 99999999999844
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.44 E-value=6.5e-13 Score=97.97 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=104.4
Q ss_pred CccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCC-ccccccC--------------CCCC-----------------
Q 036860 1 MADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAV-NVYQFDK--------------PHSC----------------- 48 (159)
Q Consensus 1 ~ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~v-d~~~~~~--------------~~~~----------------- 48 (159)
++|.++++|+..++.+.+. +..+.+ +.+++|++ |...+.. ....
T Consensus 141 ~ad~~~~~s~~~~~~l~~~-G~~~~k---I~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~ 216 (363)
T cd03786 141 LSDLHFAPTEEARRNLLQE-GEPPER---IFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQ 216 (363)
T ss_pred HhhhccCCCHHHHHHHHHc-CCCccc---EEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHH
Confidence 3788999999999988764 443333 77888874 4321110 0000
Q ss_pred -------------c-ccccccccHHHHHHHHHHHHHcCC-CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 49 -------------G-CDKLLRENVEYLEELKSLAERNGM-SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 49 -------------~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
. +...+.+++.....+++.+.+++. .++|+|+|.....++..+|+.||+++.+|. | ...|
T Consensus 217 ~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~E 291 (363)
T cd03786 217 LEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEE 291 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhh
Confidence 0 111122455556777777777665 568999999888899999999999999884 3 5799
Q ss_pred hhhcCCcEEEeCC-CCCceeecc----------HHHHHHHHHHhcCHHHHHHhh
Q 036860 114 AMAAYKPVSACDS-GGPVETIKN----------EEFSLSMAKLIQEPQMAKNMG 156 (159)
Q Consensus 114 ama~G~Pvi~~~~-~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~ 156 (159)
||++|+|+|+++. +...+.+.+ +++++++.++++++..+++|+
T Consensus 292 a~~~g~PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 292 ASFLGVPVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred hhhcCCCEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 9999999999974 434455443 789999999999988887764
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1.5e-12 Score=93.72 Aligned_cols=151 Identities=28% Similarity=0.418 Sum_probs=111.5
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccC------CCC--C-------------------------
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDK------PHS--C------------------------- 48 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~------~~~--~------------------------- 48 (159)
++.+++.+......+...+... +..+++++++...+.. ... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~ 225 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPN-----KIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLK 225 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCC-----CceEecCCcCHHHcCccccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhh
Confidence 4567777777755554433221 2668888988875543 111 1
Q ss_pred --c--ccccccccHHH-HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEE
Q 036860 49 --G--CDKLLRENVEY-LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123 (159)
Q Consensus 49 --~--~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~ 123 (159)
. ....+.|.+.. ...+...+...+..+++.|+|+++.+++..+++.|+++++|+..|++|++++|||++|+|||+
T Consensus 226 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~ 305 (381)
T COG0438 226 KRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIA 305 (381)
T ss_pred hhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEE
Confidence 1 23344455544 355666777777778899999999888888999999999999999999999999999999999
Q ss_pred eCCCCCceeecc------------HHHHHHHHHHhcCHHHHHHhhh
Q 036860 124 CDSGGPVETIKN------------EEFSLSMAKLIQEPQMAKNMGE 157 (159)
Q Consensus 124 ~~~~~~~e~i~~------------~~l~~~i~~l~~~~~~~~~~~~ 157 (159)
++.++..+++.+ +++++++..+.++++.++.+++
T Consensus 306 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 306 SDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred CCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998877666664 7999999999998866666553
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.38 E-value=7.7e-13 Score=84.52 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=52.6
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeCCCCCceeecc-----------HHHHHHH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-----------EEFSLSM 142 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-----------~~l~~~i 142 (159)
++|+|+|++ +++.+++++||+++.|+. .++++.+++|||++|+|||+++. +..++... ++++++|
T Consensus 53 ~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i 129 (135)
T PF13692_consen 53 PNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPEELAEAI 129 (135)
T ss_dssp CTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HHHHHHHH
T ss_pred CCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHHHHHHHH
Confidence 489999999 589999999999999986 67899999999999999999987 34444432 9999999
Q ss_pred HHHhcC
Q 036860 143 AKLIQE 148 (159)
Q Consensus 143 ~~l~~~ 148 (159)
.++++|
T Consensus 130 ~~l~~d 135 (135)
T PF13692_consen 130 ERLLND 135 (135)
T ss_dssp HHHHH-
T ss_pred HHHhcC
Confidence 998865
No 90
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.36 E-value=2.6e-11 Score=93.21 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=71.7
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc----------HHHHHHHHH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN----------EEFSLSMAK 144 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~ 144 (159)
.+|.|.|+.+..++.+.|+.+.+++.+|..|+++ +.+||++.|+|+| .-|..+++.+ .+|++++..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li~d~~~l~~al~~ 484 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYIIDDISELLKALDY 484 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEeCCHHHHHHHHHH
Confidence 6899999999889999999999999999999999 9999999999999 3334667766 999999999
Q ss_pred HhcCHHHHHHhhhc
Q 036860 145 LIQEPQMAKNMGEN 158 (159)
Q Consensus 145 l~~~~~~~~~~~~~ 158 (159)
++.++..+++++..
T Consensus 485 ~L~~~~~wn~~~~~ 498 (519)
T TIGR03713 485 YLDNLKNWNYSLAY 498 (519)
T ss_pred HHhCHHHHHHHHHH
Confidence 99999888877654
No 91
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.36 E-value=5.2e-12 Score=96.42 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=53.8
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc------------------------HHHHHH
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN------------------------EEFSLS 141 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~------------------------~~l~~~ 141 (159)
-+..+++..||+.++||.+|+||.+.+|+.++|+|.|+|+..|....+.+ +++++.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999998888766664 777777
Q ss_pred HHHHhc-CHHHHHHhhh
Q 036860 142 MAKLIQ-EPQMAKNMGE 157 (159)
Q Consensus 142 i~~l~~-~~~~~~~~~~ 157 (159)
|.++.. ++..+..++.
T Consensus 541 l~~f~~~~~rqri~~Rn 557 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRN 557 (633)
T ss_dssp HHHHHT--HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 877776 5555555544
No 92
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.30 E-value=2.2e-11 Score=90.52 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHc-CCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe------------
Q 036860 58 VEYLEELKSLAERN-GMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC------------ 124 (159)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~------------ 124 (159)
+...+.+++.+++. ++. +.+.. .++..+|+.||+++.+| |.+.+|+|++|+|+|+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~--v~~~~----~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~ 298 (380)
T PRK00025 230 PKRREQIEEALAEYAGLE--VTLLD----GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAK 298 (380)
T ss_pred hhhHHHHHHHHhhcCCCC--eEEEc----ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHH
Confidence 44555566666554 332 44432 36789999999999987 78888999999999987
Q ss_pred -----CCCCCce----------eecc----HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 125 -----DSGGPVE----------TIKN----EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 125 -----~~~~~~e----------~i~~----~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
+.+++++ ++.+ +.+++.+.++++|++.+++|+++
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 351 (380)
T PRK00025 299 RLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEG 351 (380)
T ss_pred HHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222222 2222 79999999999999999988775
No 93
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.24 E-value=1.2e-11 Score=74.05 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=56.9
Q ss_pred EEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc----------HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 97 CVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN----------EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 97 ~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~----------~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+++.|+...+++..++|+||||+|+|+++.++..+++.+ +++.+++..+++||+++++|+++|
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 356788889999999999999999999998888888865 999999999999999999999875
No 94
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.22 E-value=5.7e-10 Score=84.18 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=94.1
Q ss_pred cEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC------------------------cccccccccH
Q 036860 3 DVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC------------------------GCDKLLRENV 58 (159)
Q Consensus 3 d~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~------------------------~~~~~i~~~~ 58 (159)
|.||+.++..++.+.+.++.. . ++.++|-|+=.. +....+. ....-+ |-+
T Consensus 241 ~~iIv~T~~q~~di~~r~~~~--~--~~~~ip~g~i~~-~~~~~r~~~~~l~~t~s~~I~~i~~Lv~~lPd~~f~I-ga~ 314 (438)
T TIGR02919 241 KKIIIPNKNEYEKIKELLDNE--Y--QEQISQLGYLYP-FKKDNKYRKQALILTNSDQIEHLEEIVQALPDYHFHI-AAL 314 (438)
T ss_pred CeEEeCCHHHHHHHHHHhCcc--c--CceEEEEEEEEe-eccccCCcccEEEECCHHHHHHHHHHHHhCCCcEEEE-Eec
Confidence 789999988888888777631 1 233444442211 1111111 111122 322
Q ss_pred -HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC-CCceeecc-
Q 036860 59 -EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG-GPVETIKN- 135 (159)
Q Consensus 59 -~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~-~~~e~i~~- 135 (159)
++...+.++ .++ ++.+.+.|+. ..++.++|..||+++..+..|++++++.||++.|+|+++.+.. +..+++.+
T Consensus 315 te~s~kL~~L-~~y--~nvvly~~~~-~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g 390 (438)
T TIGR02919 315 TEMSSKLMSL-DKY--DNVKLYPNIT-TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASE 390 (438)
T ss_pred CcccHHHHHH-Hhc--CCcEEECCcC-hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCC
Confidence 224566666 554 3444444544 4568899999999999999999999999999999999999753 44455443
Q ss_pred --------HHHHHHHHHHhcCHHHHHH
Q 036860 136 --------EEFSLSMAKLIQEPQMAKN 154 (159)
Q Consensus 136 --------~~l~~~i~~l~~~~~~~~~ 154 (159)
++++++|.+++++++.+++
T Consensus 391 ~l~~~~~~~~m~~~i~~lL~d~~~~~~ 417 (438)
T TIGR02919 391 NIFEHNEVDQLISKLKDLLNDPNQFRE 417 (438)
T ss_pred ceecCCCHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999965543
No 95
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.08 E-value=2.9e-09 Score=86.24 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC----cEEEeCCCCCceeec-c---------HHHHHH
Q 036860 77 VNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK----PVSACDSGGPVETIK-N---------EEFSLS 141 (159)
Q Consensus 77 v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~----Pvi~~~~~~~~e~i~-~---------~~l~~~ 141 (159)
|+++ ..++.+++..+|+.||++++||..|||+++..|||+|+. ++|.|...|..+.+. . ++++++
T Consensus 441 v~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L~~~AllVNP~D~~~vA~A 520 (934)
T PLN03064 441 IHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAS 520 (934)
T ss_pred EEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHhCCceEEECCCCHHHHHHH
Confidence 4443 568999999999999999999999999999999999944 444488777675553 2 999999
Q ss_pred HHHHhc-CHHHHHHhhh
Q 036860 142 MAKLIQ-EPQMAKNMGE 157 (159)
Q Consensus 142 i~~l~~-~~~~~~~~~~ 157 (159)
|.+.++ ++++++++.+
T Consensus 521 I~~AL~M~~~Er~~r~~ 537 (934)
T PLN03064 521 IAQALNMPEEEREKRHR 537 (934)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 999998 7777766543
No 96
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.8e-09 Score=77.48 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeC--CC-CCCCccHHHHhhhcCCcEEEeCCCCCc
Q 036860 54 LRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYT--PK-DEHFGIVPLEAMAAYKPVSACDSGGPV 130 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~--s~-~e~~g~~~lEama~G~Pvi~~~~~~~~ 130 (159)
+.|.|+.++.+.+.+++.++++--..+.|...++.+.+++.||+.+.- |. .-..|+++++...||+||++-+...+.
T Consensus 298 ITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ 377 (444)
T KOG2941|consen 298 ITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLD 377 (444)
T ss_pred EcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHH
Confidence 458999999999999999997655556899999999999999987753 32 245789999999999999999999999
Q ss_pred eeecc----------HHHHHHHHHHhc----CHHHHHHhhhc
Q 036860 131 ETIKN----------EEFSLSMAKLIQ----EPQMAKNMGEN 158 (159)
Q Consensus 131 e~i~~----------~~l~~~i~~l~~----~~~~~~~~~~~ 158 (159)
|++.+ +++++.+..+++ +.+++.++.++
T Consensus 378 ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn 419 (444)
T KOG2941|consen 378 ELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKN 419 (444)
T ss_pred HHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 99988 999999999998 77787777665
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.68 E-value=3.1e-07 Score=68.71 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=58.6
Q ss_pred HHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC------------------
Q 036860 64 LKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD------------------ 125 (159)
Q Consensus 64 ~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~------------------ 125 (159)
+++....++....+.+++. ++..+|+.||+++.+| |.+.+|+|++|+|+|...
T Consensus 241 ~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~ 311 (385)
T TIGR00215 241 FEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDY 311 (385)
T ss_pred HHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCe
Confidence 3334444333334554433 3467999999999988 777789999999999872
Q ss_pred ---------CCCCceeecc----HHHHHHHHHHhcCH----HHHHHhhh
Q 036860 126 ---------SGGPVETIKN----EEFSLSMAKLIQEP----QMAKNMGE 157 (159)
Q Consensus 126 ---------~~~~~e~i~~----~~l~~~i~~l~~~~----~~~~~~~~ 157 (159)
.+..+|++++ +.+++.+.++++|+ +.++++.+
T Consensus 312 ~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~ 360 (385)
T TIGR00215 312 ISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQ 360 (385)
T ss_pred eeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 2223333333 78999999999998 77666543
No 98
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.57 E-value=2e-06 Score=67.65 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEe-CCC-CCCCccHHHHhhhcCCcEEEeCCCCCce
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFY-TPK-DEHFGIVPLEAMAAYKPVSACDSGGPVE 131 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~-~s~-~e~~g~~~lEama~G~Pvi~~~~~~~~e 131 (159)
+...+..++++...+++|.|+-..+..--..++..||++++ ||+ .|++|++-+-||..|.+.+++--|...|
T Consensus 443 ~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E 516 (601)
T TIGR02094 443 IIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGE 516 (601)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccc
Confidence 44555555554345568888877777666799999999999 999 8999999999999999999986544333
No 99
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.35 E-value=2.7e-06 Score=64.58 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCC-CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC--------------
Q 036860 61 LEELKSLAERNGMS-DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD-------------- 125 (159)
Q Consensus 61 ~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~-------------- 125 (159)
...+.+.+.+.|++ +++.|.+..+.++....++.+|+++-+. .-+-+.+.+||+.+|+|||+-.
T Consensus 327 ~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~-p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~ 405 (468)
T PF13844_consen 327 EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTF-PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILR 405 (468)
T ss_dssp HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--S-SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCC-CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHH
Confidence 46788888888885 6899999999888888999999999864 3344688999999999999976
Q ss_pred CCCCceeecc--HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 126 SGGPVETIKN--EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 126 ~~~~~e~i~~--~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
.-|+.|.+.. +++.+.-.+|-+|++.+++++++
T Consensus 406 ~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~ 440 (468)
T PF13844_consen 406 ALGLPELIADSEEEYVEIAVRLATDPERLRALRAK 440 (468)
T ss_dssp HHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2344555555 88888889999999988877653
No 100
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.19 E-value=3.5e-05 Score=59.13 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=55.4
Q ss_pred EE-EccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCc----EEEeCCCCCceeecc----------HHHHHH
Q 036860 77 VN-FITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKP----VSACDSGGPVETIKN----------EEFSLS 141 (159)
Q Consensus 77 v~-~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~P----vi~~~~~~~~e~i~~----------~~l~~~ 141 (159)
|. +.+.++.+++..+|+.||+++.+|..+|+.++..|+.+|... +|.|...|..+.+.+ +++|++
T Consensus 354 I~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~al~VNP~d~~~~A~a 433 (474)
T PF00982_consen 354 IIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEAALLVNPWDIEEVADA 433 (474)
T ss_dssp EEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS-EEE-TT-HHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCccEEECCCChHHHHHH
Confidence 44 446799999999999999999999999999999999999775 677777777777774 999999
Q ss_pred HHHHhc-CHHHHHH
Q 036860 142 MAKLIQ-EPQMAKN 154 (159)
Q Consensus 142 i~~l~~-~~~~~~~ 154 (159)
|.+.++ .++++++
T Consensus 434 i~~AL~M~~~Er~~ 447 (474)
T PF00982_consen 434 IHEALTMPPEERKE 447 (474)
T ss_dssp HHHHHT--HHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 999998 5555543
No 101
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=9.2e-05 Score=56.56 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=62.9
Q ss_pred EEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC----cEEEeCCCCCceeecc---------HHHHHHH
Q 036860 77 VNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK----PVSACDSGGPVETIKN---------EEFSLSM 142 (159)
Q Consensus 77 v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~----Pvi~~~~~~~~e~i~~---------~~l~~~i 142 (159)
|.++ -.++.+++..+|+.||+++.++..+|+.++..|+.+|-- |.|-|...|....+.+ ++++++|
T Consensus 360 v~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~AliVNP~d~~~va~ai 439 (486)
T COG0380 360 VHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRDALIVNPWDTKEVADAI 439 (486)
T ss_pred eEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhccCEeECCCChHHHHHHH
Confidence 4444 568999999999999999999999999999999988743 6777777666666666 9999999
Q ss_pred HHHhc-CHHHHH
Q 036860 143 AKLIQ-EPQMAK 153 (159)
Q Consensus 143 ~~l~~-~~~~~~ 153 (159)
.+.++ .+++++
T Consensus 440 ~~AL~m~~eEr~ 451 (486)
T COG0380 440 KRALTMSLEERK 451 (486)
T ss_pred HHHhcCCHHHHH
Confidence 99988 555544
No 102
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.06 E-value=3.4e-05 Score=58.93 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCC----CC--cEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC-----cEEEeCCC
Q 036860 60 YLEELKSLAERNGM----SD--RVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK-----PVSACDSG 127 (159)
Q Consensus 60 ~~~~~~~~~~~~~~----~~--~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~-----Pvi~~~~~ 127 (159)
+..++++++.+.|- .+ .|+++ ..++.+++..+|+.||+++.++..+|+.++.-|+.+|.. ++|.|...
T Consensus 310 l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefA 389 (474)
T PRK10117 310 IRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA 389 (474)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEeccc
Confidence 35556666555432 12 24444 678999999999999999999999999999999999965 37777777
Q ss_pred CCceeecc---------HHHHHHHHHHhc-CHHHHH
Q 036860 128 GPVETIKN---------EEFSLSMAKLIQ-EPQMAK 153 (159)
Q Consensus 128 ~~~e~i~~---------~~l~~~i~~l~~-~~~~~~ 153 (159)
|..+.+.+ ++++++|.+.++ .+++++
T Consensus 390 GaA~~L~~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~ 425 (474)
T PRK10117 390 GAANELTSALIVNPYDRDEVAAALDRALTMPLAERI 425 (474)
T ss_pred chHHHhCCCeEECCCCHHHHHHHHHHHHcCCHHHHH
Confidence 77777665 999999999998 444443
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=0.00047 Score=51.51 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHHHHHcCCCC-------------cEEEccCCCHHHHHHHHHhCcEEEeCC-CCCCCccHHHHhhhcCCcE
Q 036860 56 ENVEYLEELKSLAERNGMSD-------------RVNFITSCSTTERNALLFECLCVFYTP-KDEHFGIVPLEAMAAYKPV 121 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-------------~v~~~g~~~~~~l~~~~~~a~~~i~~s-~~e~~g~~~lEama~G~Pv 121 (159)
...+-.+.+++++++.|+.- +|.+...+ .||..+|+-+|+.++.- ..+--|--++|+.++|+||
T Consensus 268 RHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pv 345 (419)
T COG1519 268 RHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPV 345 (419)
T ss_pred CChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCE
Confidence 45556778888888887641 23333333 57899999999988854 4455677899999999999
Q ss_pred EEeC-CCCCce------------eecc-HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 122 SACD-SGGPVE------------TIKN-EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 122 i~~~-~~~~~e------------~i~~-~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
|.-. .-...| .+.+ +.++.++..+++|++.+++|+++|
T Consensus 346 i~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~ 397 (419)
T COG1519 346 IFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAYGRAG 397 (419)
T ss_pred EeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9965 222222 3333 777777788888999999998764
No 104
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=8.3e-05 Score=55.13 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=60.4
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc--eeecc-------------------
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV--ETIKN------------------- 135 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~--e~i~~------------------- 135 (159)
+...++. ++|..+|+.||++|.-+ -++++.|..++|+|.|--+.+... +...+
T Consensus 237 ~~v~~f~--~dm~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt 310 (357)
T COG0707 237 VRVLPFI--DDMAALLAAADLVISRA----GALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELT 310 (357)
T ss_pred EEEeeHH--hhHHHHHHhccEEEeCC----cccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCC
Confidence 6677777 45799999999999633 379999999999999997754431 11111
Q ss_pred -HHHHHHHHHHhcCHHHHHHhhhcC
Q 036860 136 -EEFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 136 -~~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+.+.+.|.+++++++.+++|++++
T Consensus 311 ~~~l~~~i~~l~~~~~~l~~m~~~a 335 (357)
T COG0707 311 PEKLAELILRLLSNPEKLKAMAENA 335 (357)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 799999999999999999998764
No 105
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8.4e-05 Score=57.25 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHcCCC-CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC----------
Q 036860 57 NVEYLEELKSLAERNGMS-DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD---------- 125 (159)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~---------- 125 (159)
+......+++++++.|+. ++++|.+..++++..+.|+-||+++- +..-+-+.+.+|++.+|+|||+-.
T Consensus 470 ~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLD-TyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~ 548 (620)
T COG3914 470 DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLD-TYPYGGHTTASDALWMGVPVLTRVGEQFASRNGA 548 (620)
T ss_pred cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeee-cccCCCccchHHHHHhcCceeeeccHHHHHhhhH
Confidence 456788999999999974 68999999999999999999999997 444455688999999999999965
Q ss_pred ----CCCCceeecc--HHHHHHHHHHhcCHHHHHHh
Q 036860 126 ----SGGPVETIKN--EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 126 ----~~~~~e~i~~--~~l~~~i~~l~~~~~~~~~~ 155 (159)
.-|++|.+.+ ++..++-..+-+|...+++.
T Consensus 549 si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~ 584 (620)
T COG3914 549 SIATNAGIPELVADSRADYVEKAVAFGSDRALRQQV 584 (620)
T ss_pred HHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhh
Confidence 4566777766 66666666666666555544
No 106
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.92 E-value=7.3e-05 Score=56.09 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCce-------------eecc-----
Q 036860 74 SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVE-------------TIKN----- 135 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e-------------~i~~----- 135 (159)
++++.+.++++.. +++..||++|..+- ..++.||+++|+|+|+....+-.. .+..
T Consensus 274 ~~~v~~~~~~p~~---~ll~~~~~~I~hgG----~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~ 346 (392)
T TIGR01426 274 PPNVEVRQWVPQL---EILKKADAFITHGG----MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTA 346 (392)
T ss_pred CCCeEEeCCCCHH---HHHhhCCEEEECCC----chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCH
Confidence 4578888888864 67899999986332 357899999999999976432211 1111
Q ss_pred HHHHHHHHHHhcCHHHHHHh
Q 036860 136 EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 136 ~~l~~~i~~l~~~~~~~~~~ 155 (159)
++++++|.++++|++.++++
T Consensus 347 ~~l~~ai~~~l~~~~~~~~~ 366 (392)
T TIGR01426 347 EKLREAVLAVLSDPRYAERL 366 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHH
Confidence 78999999999998755443
No 107
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.90 E-value=0.00054 Score=51.68 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=53.4
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC----------------Cceeecc---HH
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG----------------PVETIKN---EE 137 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~----------------~~e~i~~---~~ 137 (159)
+.+..+. .++.++|+.||++|..| |.+-.|++++|+|+|.....+ ....+.+ +.
T Consensus 281 ~~v~~~~--~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~ 353 (396)
T TIGR03492 281 LEVLLGR--GAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQ 353 (396)
T ss_pred eEEEech--HhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHH
Confidence 4444443 45789999999999753 455699999999999987211 1222222 89
Q ss_pred HHHHHHHHhcCHHHHHHhh
Q 036860 138 FSLSMAKLIQEPQMAKNMG 156 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~~~ 156 (159)
+++.+.++++|++.+++|.
T Consensus 354 l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 354 AAQVVRQLLADPELLERCR 372 (396)
T ss_pred HHHHHHHHHcCHHHHHHHH
Confidence 9999999999998887775
No 108
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=8.8e-06 Score=60.88 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
-+..++.+.|++.++||.+|+||.+..|.--+|+|-|+|+.+|..-++++
T Consensus 492 lDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMee 541 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEE 541 (692)
T ss_pred CCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHH
Confidence 35679999999999999999999999999999999999999888776665
No 109
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.88 E-value=0.00028 Score=57.16 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCcee
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVET 132 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~ 132 (159)
..+.+++++...+++|.|+...+-.--..++..||+.++||+ .|++|++-+-||.-|.+-+++--|.-.|.
T Consensus 534 k~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~ 606 (778)
T cd04299 534 QEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEG 606 (778)
T ss_pred HHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccc
Confidence 344444544345568999888777666799999999999999 89999999999999999999865444333
No 110
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.87 E-value=0.00014 Score=59.61 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=58.4
Q ss_pred EEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC-------------------cEEEeCCCCCceeecc-
Q 036860 77 VNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK-------------------PVSACDSGGPVETIKN- 135 (159)
Q Consensus 77 v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~-------------------Pvi~~~~~~~~e~i~~- 135 (159)
|+++ ..++.+++..+|+.||+++.++..+|+.++..|+.+|.. .+|.|...|....+..
T Consensus 417 v~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~~A 496 (854)
T PLN02205 417 IVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSGA 496 (854)
T ss_pred EEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhCcC
Confidence 5555 778999999999999999999999999999999999854 3566666555544443
Q ss_pred --------HHHHHHHHHHhc
Q 036860 136 --------EEFSLSMAKLIQ 147 (159)
Q Consensus 136 --------~~l~~~i~~l~~ 147 (159)
++++++|.+.++
T Consensus 497 i~VNP~d~~~~a~ai~~AL~ 516 (854)
T PLN02205 497 IRVNPWNIDAVADAMDSALE 516 (854)
T ss_pred eEECCCCHHHHHHHHHHHHc
Confidence 999999999998
No 111
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.87 E-value=2e-05 Score=52.15 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=55.2
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc--eeecc-----------------
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV--ETIKN----------------- 135 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~--e~i~~----------------- 135 (159)
.+|.++++.+ ++.+++..||++|.- +-+.++.|++++|+|.|.-+..... +...+
T Consensus 55 ~~v~~~~~~~--~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVD--NMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSS--SHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechh--hHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 5799999985 468999999999862 2247899999999999887655522 11111
Q ss_pred ---HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 136 ---EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 136 ---~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
+.|.++|..+++++..+++|+++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 67999999999999887777654
No 112
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=3.8e-05 Score=56.29 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=67.4
Q ss_pred CcEEEccCCCH-HHHHHHHHhCcEEEeCCCC---C-CC--ccHHHHhhhcCCcEEEeCCCCCceeecc----------HH
Q 036860 75 DRVNFITSCST-TERNALLFECLCVFYTPKD---E-HF--GIVPLEAMAAYKPVSACDSGGPVETIKN----------EE 137 (159)
Q Consensus 75 ~~v~~~g~~~~-~~l~~~~~~a~~~i~~s~~---e-~~--g~~~lEama~G~Pvi~~~~~~~~e~i~~----------~~ 137 (159)
+++...|+.+. ..+...++.-++.+.-++. + ++ .+.+.|+++||.|.++....++..++.+ .+
T Consensus 237 ~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kd 316 (373)
T COG4641 237 PNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKD 316 (373)
T ss_pred chhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHH
Confidence 35667777765 6777888888888865441 2 23 6789999999999999887766666665 99
Q ss_pred HHHHHHHHhcCHHHHHHhhhcC
Q 036860 138 FSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+.+++..+++.+++++++++.|
T Consensus 317 l~~~~~yll~h~~erkeiae~~ 338 (373)
T COG4641 317 LKEKLKYLLNHPDERKEIAECA 338 (373)
T ss_pred HHHHHHHHhcCcchHHHHHHhh
Confidence 9999999999999999998764
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.44 E-value=0.0016 Score=48.62 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=52.1
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCcee---------ecc--HHHHHHHH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVET---------IKN--EEFSLSMA 143 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~---------i~~--~~l~~~i~ 143 (159)
+++.+++.++..++..+++.|++++--|. | .+.||.++|+|+|.-. .-.|. ++. +++.+++.
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~lg~Pvv~l~--~R~e~~~~g~nvl~vg~~~~~I~~a~~ 334 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSFGVPTINIG--TRQKGRLRADSVIDVDPDKEEIVKAIE 334 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhcCCCEEeec--CCchhhhhcCeEEEeCCCHHHHHHHHH
Confidence 57999999999999999999999995443 2 3389999999999753 22222 221 88888888
Q ss_pred HHhcCHHHHH
Q 036860 144 KLIQEPQMAK 153 (159)
Q Consensus 144 ~l~~~~~~~~ 153 (159)
++. +++.++
T Consensus 335 ~~~-~~~~~~ 343 (365)
T TIGR03568 335 KLL-DPAFKK 343 (365)
T ss_pred HHh-ChHHHH
Confidence 854 444333
No 114
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.44 E-value=0.00062 Score=51.15 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=50.6
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCC-------------ceeecc-----
Q 036860 74 SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGP-------------VETIKN----- 135 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~-------------~e~i~~----- 135 (159)
+++|.+.++++.. .+|..||++|. -|-..++.||+++|+|+|.....+- .-.+..
T Consensus 287 ~~~v~~~~~~p~~---~ll~~~d~~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~ 359 (401)
T cd03784 287 PDNVRVVDFVPHD---WLLPRCAAVVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTA 359 (401)
T ss_pred CCceEEeCCCCHH---HHhhhhheeee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCH
Confidence 3578888998754 67899999994 2224889999999999999865431 111111
Q ss_pred HHHHHHHHHHhcCH
Q 036860 136 EEFSLSMAKLIQEP 149 (159)
Q Consensus 136 ~~l~~~i~~l~~~~ 149 (159)
+++.+++.++++++
T Consensus 360 ~~l~~al~~~l~~~ 373 (401)
T cd03784 360 ERLAAALRRLLDPP 373 (401)
T ss_pred HHHHHHHHHHhCHH
Confidence 88999999998854
No 115
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.43 E-value=0.00071 Score=48.64 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
..+++++.++.. .++++++++ .++.++|..||++|.+ .|.++.|++++|+|+|+....
T Consensus 212 ~~~~l~~~~~~~---~~i~~~~~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 212 NLDELKKFAKEY---PNIILFIDV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred CHHHHHHHHHhC---CCEEEEeCH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 345666666542 468888888 4679999999999973 568999999999999987653
No 116
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.37 E-value=0.00089 Score=49.01 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 74 SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
++++.+.++.+ +++.++|..||++|.-+- ..++.|++++|+|++..+..+..|...
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~ 283 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHGG----FSLISEALSLGKPLIVIPDLGQFEQGN 283 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECCC----hHHHHHHHHcCCCEEEEcCCCcccHHH
Confidence 45777788776 678999999999997442 246999999999999988765445433
No 117
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.23 E-value=0.003 Score=49.25 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCCcEEEccCCCHHHHHHHH--HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC-------------Cceeecc--
Q 036860 73 MSDRVNFITSCSTTERNALL--FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG-------------PVETIKN-- 135 (159)
Q Consensus 73 ~~~~v~~~g~~~~~~l~~~~--~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~-------------~~e~i~~-- 135 (159)
+++||.+.+|+|.. +++ .+++++|. -|-..++.||+.+|+|+|+-+..+ ....+..
T Consensus 344 ~p~Nv~i~~w~Pq~---~lL~hp~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~ 416 (507)
T PHA03392 344 LPANVLTQKWFPQR---AVLKHKNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVT 416 (507)
T ss_pred CCCceEEecCCCHH---HHhcCCCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCC
Confidence 45788888998875 667 45788874 123468999999999999977322 1222211
Q ss_pred ---HHHHHHHHHHhcCHHHHHHh
Q 036860 136 ---EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 136 ---~~l~~~i~~l~~~~~~~~~~ 155 (159)
+++.++|.++++|+..+++.
T Consensus 417 ~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 417 VSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred cCHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999997665543
No 118
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.13 E-value=0.0033 Score=46.75 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=48.8
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC-C--ceeecc--------------------HHHHHHH
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG-P--VETIKN--------------------EEFSLSM 142 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~-~--~e~i~~--------------------~~l~~~i 142 (159)
+++.++|..||++|.-+ -+.++.|++++|+|.|.-.... . .+...+ +.+.+++
T Consensus 244 ~~m~~~~~~adlvIsr~----G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l 319 (352)
T PRK12446 244 GELPDILAITDFVISRA----GSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHV 319 (352)
T ss_pred hhHHHHHHhCCEEEECC----ChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHH
Confidence 46889999999999733 3788999999999999985431 1 111111 7899999
Q ss_pred HHHhcCHHHHHHh
Q 036860 143 AKLIQEPQMAKNM 155 (159)
Q Consensus 143 ~~l~~~~~~~~~~ 155 (159)
.++++|++.+++.
T Consensus 320 ~~ll~~~~~~~~~ 332 (352)
T PRK12446 320 EELSHNNEKYKTA 332 (352)
T ss_pred HHHHcCHHHHHHH
Confidence 9999988766543
No 119
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.11 E-value=0.013 Score=43.10 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 57 NVEYLEELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
+..|.+++.+...++--.+++..+ .+++-+|..+++++||+.++... -.|.|+. .=.+.+|+||+.+........+.
T Consensus 227 n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI-~lLl~~G~~v~L~~~np~~~~l~ 305 (360)
T PF07429_consen 227 NQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNI-CLLLQLGKKVFLSRDNPFWQDLK 305 (360)
T ss_pred hHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHH-HHHHHcCCeEEEecCChHHHHHH
Confidence 467899999999887655678765 79999999999999999999775 4677754 45788999999987544444333
No 120
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.07 E-value=0.0047 Score=46.82 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc----eeecc-------------
Q 036860 73 MSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV----ETIKN------------- 135 (159)
Q Consensus 73 ~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~----e~i~~------------- 135 (159)
.+.|+...+++|.. +++.+||++|... -..+..|++..|+|+|+-..+.-. +.+++
T Consensus 282 ~p~n~~v~~~~p~~---~~l~~ad~vI~hG----G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~ 354 (406)
T COG1819 282 VPDNVIVADYVPQL---ELLPRADAVIHHG----GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELT 354 (406)
T ss_pred CCCceEEecCCCHH---HHhhhcCEEEecC----CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCC
Confidence 34577888888775 6999999999732 246789999999999997755211 11111
Q ss_pred -HHHHHHHHHHhcCHHHHHHh
Q 036860 136 -EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 136 -~~l~~~i~~l~~~~~~~~~~ 155 (159)
+.++++|.++++|+..++..
T Consensus 355 ~~~l~~av~~vL~~~~~~~~~ 375 (406)
T COG1819 355 EERLRAAVNEVLADDSYRRAA 375 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999988776544
No 121
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.0022 Score=47.50 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC---------------------------CCCCceeecc----HH
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD---------------------------SGGPVETIKN----EE 137 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~---------------------------~~~~~e~i~~----~~ 137 (159)
.+.+..||+.+.. .|.+.+|++.+|+|.|++- ..-++|++++ +.
T Consensus 259 ~~a~~~aD~al~a-----SGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~ 333 (381)
T COG0763 259 RKAFAAADAALAA-----SGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPEN 333 (381)
T ss_pred HHHHHHhhHHHHh-----ccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHH
Confidence 4556666655543 3799999999999999874 1223333332 99
Q ss_pred HHHHHHHHhcCHHHHHHhh
Q 036860 138 FSLSMAKLIQEPQMAKNMG 156 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~~~ 156 (159)
+++++..+++|...++++.
T Consensus 334 la~~l~~ll~~~~~~~~~~ 352 (381)
T COG0763 334 LARALEELLLNGDRREALK 352 (381)
T ss_pred HHHHHHHHhcChHhHHHHH
Confidence 9999999999886555443
No 122
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.81 E-value=0.02 Score=42.97 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=43.5
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC---------------------------CCCCceeecc----HH
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD---------------------------SGGPVETIKN----EE 137 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~---------------------------~~~~~e~i~~----~~ 137 (159)
.+.++.||+.+..| |.+-+|++..|+|.|+.- ..-.+|++++ +.
T Consensus 255 ~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 255 YDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred HHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHH
Confidence 45666666666533 789999999999999864 2233344443 99
Q ss_pred HHHHHHHHhcCHHHHH
Q 036860 138 FSLSMAKLIQEPQMAK 153 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~ 153 (159)
+++++..+++|++.++
T Consensus 330 i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 330 IAAELLELLENPEKRK 345 (373)
T ss_pred HHHHHHHHhcCHHHHH
Confidence 9999999999887644
No 123
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.59 E-value=0.0078 Score=46.70 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=46.7
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC-------------CCceeecc-----H
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG-------------GPVETIKN-----E 136 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~-------------~~~e~i~~-----~ 136 (159)
+|+.+..|+|.. ++|+...+-++-+. |--.++.||+.+|+|+|+.+.- |....+.. +
T Consensus 323 ~n~~~~~W~PQ~---~lL~hp~v~~fitH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 397 (500)
T PF00201_consen 323 KNVLIVKWLPQN---DLLAHPRVKLFITH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEE 397 (500)
T ss_dssp TTEEEESS--HH---HHHTSTTEEEEEES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHH
T ss_pred ceEEEeccccch---hhhhcccceeeeec--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHH
Confidence 578888888865 67776654333233 2236799999999999997732 22222322 9
Q ss_pred HHHHHHHHHhcCHHHHHH
Q 036860 137 EFSLSMAKLIQEPQMAKN 154 (159)
Q Consensus 137 ~l~~~i~~l~~~~~~~~~ 154 (159)
++.++|.++++|+..+++
T Consensus 398 ~l~~ai~~vl~~~~y~~~ 415 (500)
T PF00201_consen 398 ELRAAIREVLENPSYKEN 415 (500)
T ss_dssp HHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 999999999999865543
No 124
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.57 E-value=0.008 Score=43.73 Aligned_cols=54 Identities=19% Similarity=0.034 Sum_probs=38.2
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
||++.++. ..++.+++..||++|...- -.++.|++++|+|+|.-...+..|...
T Consensus 233 ni~~~~~~-~~~~~~~m~~ad~vIs~~G----~~t~~Ea~~~g~P~l~ip~~~~~EQ~~ 286 (318)
T PF13528_consen 233 NIHVRPFS-TPDFAELMAAADLVISKGG----YTTISEALALGKPALVIPRPGQDEQEY 286 (318)
T ss_pred CEEEeecC-hHHHHHHHHhCCEEEECCC----HHHHHHHHHcCCCEEEEeCCCCchHHH
Confidence 34444432 2578999999999996321 245999999999999998766444433
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.54 E-value=0.026 Score=41.92 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHH-HhhhcCCcEEEeC-CCCCcee----
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPL-EAMAAYKPVSACD-SGGPVET---- 132 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~l-Eama~G~Pvi~~~-~~~~~e~---- 132 (159)
.....+.+...++ ++++++..++..++..++++|++++-= .| .+. ||.++|+|+|.-. .+.-.+.
T Consensus 226 ~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgd-----Ss-GI~eEa~~lg~P~v~iR~~geRqe~r~~~ 296 (346)
T PF02350_consen 226 RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGD-----SS-GIQEEAPSLGKPVVNIRDSGERQEGRERG 296 (346)
T ss_dssp HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEES-----SH-HHHHHGGGGT--EEECSSS-S-HHHHHTT
T ss_pred hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEc-----Cc-cHHHHHHHhCCeEEEecCCCCCHHHHhhc
Confidence 3444454444443 389999999999999999999999852 24 556 9999999999982 2222221
Q ss_pred ----ecc--HHHHHHHHHHhcCHHHHHHhh
Q 036860 133 ----IKN--EEFSLSMAKLIQEPQMAKNMG 156 (159)
Q Consensus 133 ----i~~--~~l~~~i~~l~~~~~~~~~~~ 156 (159)
++. +++.+++.+++++++.+.++.
T Consensus 297 ~nvlv~~~~~~I~~ai~~~l~~~~~~~~~~ 326 (346)
T PF02350_consen 297 SNVLVGTDPEAIIQAIEKALSDKDFYRKLK 326 (346)
T ss_dssp SEEEETSSHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ceEEeCCCHHHHHHHHHHHHhChHHHHhhc
Confidence 222 999999999998866666554
No 126
>PLN02562 UDP-glycosyltransferase
Probab=96.51 E-value=0.011 Score=45.44 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=48.5
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC--------------Cceeecc---HH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG--------------PVETIKN---EE 137 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~--------------~~e~i~~---~~ 137 (159)
+++.+.+|+|.. ++|+...+..+-+. +--++.+||+.+|+|+|+....+ ..--+.+ ++
T Consensus 328 ~~~~v~~w~PQ~---~iL~h~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~ 402 (448)
T PLN02562 328 KQGKVVSWAPQL---EVLKHQAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKE 402 (448)
T ss_pred cCEEEEecCCHH---HHhCCCccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHH
Confidence 456667777765 56776664333222 11367899999999999976222 1111111 88
Q ss_pred HHHHHHHHhcCHHHHHH
Q 036860 138 FSLSMAKLIQEPQMAKN 154 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~ 154 (159)
+++++++++.+++.+++
T Consensus 403 l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 403 VEEGLRKVMEDSGMGER 419 (448)
T ss_pred HHHHHHHHhCCHHHHHH
Confidence 99999999988765544
No 127
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.48 E-value=0.075 Score=38.70 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeC
Q 036860 56 ENVEYLEELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~ 125 (159)
|+..|.+++++..+++--.+++..+ .+++-+|..++++.||+.++... -.|.|+.+ =.+..|+||+.+.
T Consensus 187 gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~-lLi~~G~~v~l~r 257 (322)
T PRK02797 187 NNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLC-LLIQLGKPVVLSR 257 (322)
T ss_pred CCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHH-HHHHCCCcEEEec
Confidence 6788999999999988765677766 78999999999999999998654 47777654 4678899999885
No 128
>PLN03004 UDP-glycosyltransferase
Probab=96.47 E-value=0.015 Score=44.73 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC--------------CCCceee-------
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS--------------GGPVETI------- 133 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~--------------~~~~e~i------- 133 (159)
.++.+.+|+|.. ++|+.+++..+-+. +--++++||+++|+|+|+.+. -|..-.+
T Consensus 334 ~g~~v~~W~PQ~---~iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV---PVLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH---HHhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 468888999876 68888888443333 112589999999999999761 1222222
Q ss_pred -ccHHHHHHHHHHhcCHHHHH
Q 036860 134 -KNEEFSLSMAKLIQEPQMAK 153 (159)
Q Consensus 134 -~~~~l~~~i~~l~~~~~~~~ 153 (159)
..+++++++++++.++..++
T Consensus 409 ~~~e~l~~av~~vm~~~~~r~ 429 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECPVRE 429 (451)
T ss_pred cCHHHHHHHHHHHhcCHHHHH
Confidence 11899999999998865444
No 129
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.081 Score=39.59 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=64.4
Q ss_pred HHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC-CCCCceeecc----------HH
Q 036860 69 ERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD-SGGPVETIKN----------EE 137 (159)
Q Consensus 69 ~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~-~~~~~e~i~~----------~~ 137 (159)
..++..++|+++..+...++..++.+|.+.+-= -|...=||-..|+||++-. ...-+|.+.. +.
T Consensus 256 ~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltD-----SGgiqEEAp~lg~Pvl~lR~~TERPE~v~agt~~lvg~~~~~ 330 (383)
T COG0381 256 KRLKNVERVKLIDPLGYLDFHNLMKNAFLILTD-----SGGIQEEAPSLGKPVLVLRDTTERPEGVEAGTNILVGTDEEN 330 (383)
T ss_pred HHhCCCCcEEEeCCcchHHHHHHHHhceEEEec-----CCchhhhHHhcCCcEEeeccCCCCccceecCceEEeCccHHH
Confidence 333444578888888888888889888766642 2577789999999999964 3444444443 88
Q ss_pred HHHHHHHHhcCHHHHHHhhhc
Q 036860 138 FSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~~~~~ 158 (159)
+.+++..++++++.+++|+..
T Consensus 331 i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 331 ILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred HHHHHHHHhhChHHHHHHhcc
Confidence 999999999999999988753
No 130
>PLN02208 glycosyltransferase family protein
Probab=96.43 E-value=0.0074 Score=46.27 Aligned_cols=76 Identities=9% Similarity=-0.010 Sum_probs=49.6
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc-cHHHHhhhcCCcEEEeCC--------------CCCcee--------
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFG-IVPLEAMAAYKPVSACDS--------------GGPVET-------- 132 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g-~~~lEama~G~Pvi~~~~--------------~~~~e~-------- 132 (159)
++.+.+|+|.. ++|++..+..+-+. +| ++++||+++|+|+|+... -|....
T Consensus 312 g~~v~~W~PQ~---~iL~H~~v~~FvtH---cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 312 GVVWGGWVQQP---LILDHPSIGCFVNH---CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CcEeeccCCHH---HHhcCCccCeEEcc---CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 56666788765 56777765444333 44 579999999999999871 111211
Q ss_pred eccHHHHHHHHHHhcCH-HHHHHhhh
Q 036860 133 IKNEEFSLSMAKLIQEP-QMAKNMGE 157 (159)
Q Consensus 133 i~~~~l~~~i~~l~~~~-~~~~~~~~ 157 (159)
+..+++.++|++++.++ ++.+++++
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~ 411 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRS 411 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHH
Confidence 22289999999999765 33444444
No 131
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.34 E-value=0.0084 Score=46.10 Aligned_cols=70 Identities=10% Similarity=-0.011 Sum_probs=45.4
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC--------------Cceee----ccH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG--------------PVETI----KNE 136 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~--------------~~e~i----~~~ 136 (159)
+|..+.+|+|.. ++|....+-.+-+. -| -++++||+++|+|+|+.+..+ ..-.+ ..+
T Consensus 324 ~~g~v~~w~PQ~---~iL~h~~v~~fvtH-~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 398 (451)
T PLN02410 324 GRGYIVKWAPQK---EVLSHPAVGGFWSH-CG-WNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRG 398 (451)
T ss_pred CCeEEEccCCHH---HHhCCCccCeeeec-Cc-hhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHH
Confidence 456666888876 56776555222122 12 258899999999999977221 12111 118
Q ss_pred HHHHHHHHHhcCH
Q 036860 137 EFSLSMAKLIQEP 149 (159)
Q Consensus 137 ~l~~~i~~l~~~~ 149 (159)
++++++++++.++
T Consensus 399 ~v~~av~~lm~~~ 411 (451)
T PLN02410 399 AVERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999765
No 132
>PLN02173 UDP-glucosyl transferase family protein
Probab=96.34 E-value=0.0099 Score=45.68 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=47.5
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC--------------CCc-ee-------
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG--------------GPV-ET------- 132 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~--------------~~~-e~------- 132 (159)
+++.+.+|+|.. ++|+...+..+-+. +-.++++||+++|+|+|+.+.. +.. ++
T Consensus 317 ~~~~i~~W~PQ~---~iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQL---QVLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCHH---HHhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 567778888864 67777774444333 1237899999999999998711 111 11
Q ss_pred -eccHHHHHHHHHHhcCH
Q 036860 133 -IKNEEFSLSMAKLIQEP 149 (159)
Q Consensus 133 -i~~~~l~~~i~~l~~~~ 149 (159)
+..+++++++++++.++
T Consensus 392 ~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGE 409 (449)
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 12289999999999764
No 133
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.28 E-value=0.013 Score=45.25 Aligned_cols=69 Identities=13% Similarity=-0.053 Sum_probs=41.6
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC--------------Cceee--------
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG--------------PVETI-------- 133 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~--------------~~e~i-------- 133 (159)
++.+.+|+|.. ++|...++..+-+. +--++++||+++|+|+|+....+ ..--+
T Consensus 324 ~~~v~~w~pQ~---~iL~h~~v~~fvtH--gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 324 MGLVVPWCDQL---KVLCHSSVGGFWTH--CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred CEEEeccCCHH---HHhccCccceEEec--CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCC
Confidence 44455566543 45555554222122 12358999999999999977321 11111
Q ss_pred --ccHHHHHHHHHHhcCH
Q 036860 134 --KNEEFSLSMAKLIQEP 149 (159)
Q Consensus 134 --~~~~l~~~i~~l~~~~ 149 (159)
..+++++++++++.++
T Consensus 399 ~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 399 LVGREEIAELVKRFMDLE 416 (459)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 1189999999999864
No 134
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.26 E-value=0.031 Score=33.51 Aligned_cols=70 Identities=13% Similarity=-0.021 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc---cCCCHHH--HHHHHHhCcEEEeCCCCCCCc---cHHHHhhhcCCcEEEeCCCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI---TSCSTTE--RNALLFECLCVFYTPKDEHFG---IVPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~--l~~~~~~a~~~i~~s~~e~~g---~~~lEama~G~Pvi~~~~~~~ 129 (159)
..+...+++.++++|.. ..++ +...... ++..+..+|++|+++.+-+.. .+--+|-..|+|++.+...+.
T Consensus 9 ~~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 9 EDRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 57788899999998864 4555 4444444 899999999999987754433 445777889999999997775
No 135
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.94 E-value=0.15 Score=38.15 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=41.6
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe--CC-------CCCcee--------ecc-H
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC--DS-------GGPVET--------IKN-E 136 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~--~~-------~~~~e~--------i~~-~ 136 (159)
++|.+...- .++.+++..||++|. -++-++.|++.+++|||-. |. |...++ +.+ +
T Consensus 252 ~~i~~~~~~--~~~~~ll~~aDiLIT-----DySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~ 324 (369)
T PF04464_consen 252 SNIIFVSDN--EDIYDLLAAADILIT-----DYSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFE 324 (369)
T ss_dssp TTEEE-TT---S-HHHHHHT-SEEEE-----SS-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHH
T ss_pred CcEEECCCC--CCHHHHHHhcCEEEE-----echhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHH
Confidence 345554433 267899999999995 4678999999999999964 32 112221 111 8
Q ss_pred HHHHHHHHHhcCHH
Q 036860 137 EFSLSMAKLIQEPQ 150 (159)
Q Consensus 137 ~l~~~i~~l~~~~~ 150 (159)
+|.++|..+++++.
T Consensus 325 eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 325 ELIEAIENIIENPD 338 (369)
T ss_dssp HHHHHHTTHHHHHH
T ss_pred HHHHHHHhhhhCCH
Confidence 88888888776443
No 136
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=95.76 E-value=0.016 Score=41.87 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC-cEEEeC
Q 036860 84 STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK-PVSACD 125 (159)
Q Consensus 84 ~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~-Pvi~~~ 125 (159)
...+..+.|+++..++.|.-...+..-+.|||++|| |||.++
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecC
Confidence 345678999999999998887778999999999999 888876
No 137
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.74 E-value=0.028 Score=43.88 Aligned_cols=51 Identities=24% Similarity=0.017 Sum_probs=40.7
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEeCC-CCCCCccHHHHhhhcCCcEEEeCC
Q 036860 74 SDRVNFITSCSTTERNALLFECLCVFYTP-KDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a~~~i~~s-~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
+.-|+=+|.++..++..+++++.++|=.. -+| |-+.+||++.|+|-|-...
T Consensus 321 P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~ 372 (559)
T PF15024_consen 321 PSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRF 372 (559)
T ss_pred chhhhhcCcCCHHHHHHHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccC
Confidence 34567779999999999999999999422 223 6789999999999888653
No 138
>PLN00414 glycosyltransferase family protein
Probab=95.70 E-value=0.038 Score=42.54 Aligned_cols=76 Identities=4% Similarity=-0.073 Sum_probs=47.8
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC--------------CCCcee--------ec
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS--------------GGPVET--------IK 134 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~--------------~~~~e~--------i~ 134 (159)
+.+.+|+|.. ++|+.+.+..+-+. +--++++||+++|+|+|+.+. -+..-. +.
T Consensus 314 ~vv~~w~PQ~---~vL~h~~v~~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~ 388 (446)
T PLN00414 314 IVWEGWVEQP---LILSHPSVGCFVNH--CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFS 388 (446)
T ss_pred eEEeccCCHH---HHhcCCccceEEec--CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccC
Confidence 5666888875 57777644222222 112689999999999999861 122211 12
Q ss_pred cHHHHHHHHHHhcCH-HHHHHhhh
Q 036860 135 NEEFSLSMAKLIQEP-QMAKNMGE 157 (159)
Q Consensus 135 ~~~l~~~i~~l~~~~-~~~~~~~~ 157 (159)
.+++++++++++.++ +..+++++
T Consensus 389 ~~~i~~~v~~~m~~~~e~g~~~r~ 412 (446)
T PLN00414 389 KESLRDTVKSVMDKDSEIGNLVKR 412 (446)
T ss_pred HHHHHHHHHHHhcCChhhHHHHHH
Confidence 289999999999764 33444443
No 139
>PLN00164 glucosyltransferase; Provisional
Probab=95.54 E-value=0.031 Score=43.42 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=40.9
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC--------------CCCCcee----------
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD--------------SGGPVET---------- 132 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~--------------~~~~~e~---------- 132 (159)
+.+.+|+|.. ++|+.+.+..+-+. -| -++.+||+++|+|+|+.. .-|..-.
T Consensus 341 ~~v~~w~PQ~---~iL~h~~vg~fvtH-~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWAPQK---EILAHAAVGGFVTH-CG-WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecCCHH---HHhcCcccCeEEee-cc-cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 3344555543 45666554222122 12 258899999999999976 1111111
Q ss_pred eccHHHHHHHHHHhcCH
Q 036860 133 IKNEEFSLSMAKLIQEP 149 (159)
Q Consensus 133 i~~~~l~~~i~~l~~~~ 149 (159)
+..++++++|.+++.++
T Consensus 416 ~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 416 VEAAELERAVRSLMGGG 432 (480)
T ss_pred CcHHHHHHHHHHHhcCC
Confidence 22289999999999764
No 140
>PLN03007 UDP-glucosyltransferase family protein
Probab=95.44 E-value=0.074 Score=41.38 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=46.1
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC----------------CCc--------
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG----------------GPV-------- 130 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~----------------~~~-------- 130 (159)
.++.+.+|+|.. ++|..+++-.+-+. -| -++++||+++|+|+|+.... |+.
T Consensus 345 ~g~~v~~w~PQ~---~iL~h~~v~~fvtH-~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 419 (482)
T PLN03007 345 KGLIIRGWAPQV---LILDHQATGGFVTH-CG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVK 419 (482)
T ss_pred CCEEEecCCCHH---HHhccCccceeeec-Cc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccc
Confidence 456777888764 67777765333222 12 25899999999999997611 100
Q ss_pred ---eeeccHHHHHHHHHHhcCH
Q 036860 131 ---ETIKNEEFSLSMAKLIQEP 149 (159)
Q Consensus 131 ---e~i~~~~l~~~i~~l~~~~ 149 (159)
+.+..+++++++++++.++
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 1122289999999999875
No 141
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.36 E-value=0.031 Score=40.05 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=53.4
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe----CCC----------CCcee---eccHH
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC----DSG----------GPVET---IKNEE 137 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~----~~~----------~~~e~---i~~~~ 137 (159)
+++.++-.. +++.+++..||+.|. .-|.++.|+...|+|.++- +.. -..++ +.++.
T Consensus 210 ~~i~~~~~~--~dma~LMke~d~aI~-----AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~l~~~~ 282 (318)
T COG3980 210 PNINLYIDT--NDMAELMKEADLAIS-----AAGSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYHLKDLA 282 (318)
T ss_pred CCeeeEecc--hhHHHHHHhcchhee-----ccchHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCCCchHH
Confidence 456665443 568999999999996 3478999999999994432 321 11111 22277
Q ss_pred HHHHHHHHhcCHHHHHHhhh
Q 036860 138 FSLSMAKLIQEPQMAKNMGE 157 (159)
Q Consensus 138 l~~~i~~l~~~~~~~~~~~~ 157 (159)
+...+.++.+|+.+++.++.
T Consensus 283 ~~~~~~~i~~d~~~rk~l~~ 302 (318)
T COG3980 283 KDYEILQIQKDYARRKNLSF 302 (318)
T ss_pred HHHHHHHhhhCHHHhhhhhh
Confidence 78888899999999887654
No 142
>PLN02207 UDP-glycosyltransferase
Probab=95.18 E-value=0.091 Score=40.73 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=42.2
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc-cHHHHhhhcCCcEEEeCC--------------CCCc---------
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFG-IVPLEAMAAYKPVSACDS--------------GGPV--------- 130 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g-~~~lEama~G~Pvi~~~~--------------~~~~--------- 130 (159)
++..+.+|.|.. ++|++..+-.+-+. +| ++++||+.+|+|+|+... -|..
T Consensus 332 ~~g~i~~W~PQ~---~IL~H~~vg~FvTH---~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~ 405 (468)
T PLN02207 332 GRGMICGWSPQV---EILAHKAVGGFVSH---CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRV 405 (468)
T ss_pred CCeEEEEeCCHH---HHhcccccceeeec---CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccc
Confidence 344555777665 45666555332222 23 578999999999999761 1111
Q ss_pred ---eeeccHHHHHHHHHHhc
Q 036860 131 ---ETIKNEEFSLSMAKLIQ 147 (159)
Q Consensus 131 ---e~i~~~~l~~~i~~l~~ 147 (159)
+.+..+++.++|++++.
T Consensus 406 ~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 406 HSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccCCcccHHHHHHHHHHHHh
Confidence 12222899999999996
No 143
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.13 E-value=0.057 Score=41.67 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC----------------CCCce------
Q 036860 74 SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS----------------GGPVE------ 131 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~----------------~~~~e------ 131 (159)
.++..+.+|+|.. ++|+...+-.+-+. +-.++++||+.+|+|+|+.+. -|..-
T Consensus 326 ~~~g~v~~W~PQ~---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQI---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHH---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 3556667888865 67777776444333 123589999999999999762 12111
Q ss_pred eeccHHHHHHHHHHhcCHH
Q 036860 132 TIKNEEFSLSMAKLIQEPQ 150 (159)
Q Consensus 132 ~i~~~~l~~~i~~l~~~~~ 150 (159)
.+..++++++++++++++.
T Consensus 401 ~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cCcHHHHHHHHHHHHhhhH
Confidence 1112899999999997543
No 144
>PLN02670 transferase, transferring glycosyl groups
Probab=95.08 E-value=0.1 Score=40.46 Aligned_cols=67 Identities=6% Similarity=-0.044 Sum_probs=45.1
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc-cHHHHhhhcCCcEEEeCC-------------CCCceee---------
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFG-IVPLEAMAAYKPVSACDS-------------GGPVETI--------- 133 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g-~~~lEama~G~Pvi~~~~-------------~~~~e~i--------- 133 (159)
+.+.+|+|.. ++|++..+..+-+. +| ++++||+++|+|+|+... -|..-.+
T Consensus 341 ~vv~~W~PQ~---~IL~H~~v~~FvtH---cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~ 414 (472)
T PLN02670 341 MIHVGWVPQV---KILSHESVGGFLTH---CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSF 414 (472)
T ss_pred eEEeCcCCHH---HHhcCcccceeeec---CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcC
Confidence 5666888765 56766666333232 33 689999999999999871 1222212
Q ss_pred ccHHHHHHHHHHhcCH
Q 036860 134 KNEEFSLSMAKLIQEP 149 (159)
Q Consensus 134 ~~~~l~~~i~~l~~~~ 149 (159)
..+++.+++++++.++
T Consensus 415 ~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 415 TSDSVAESVRLAMVDD 430 (472)
T ss_pred cHHHHHHHHHHHhcCc
Confidence 1289999999999764
No 145
>PLN02764 glycosyltransferase family protein
Probab=94.95 E-value=0.063 Score=41.39 Aligned_cols=76 Identities=7% Similarity=-0.057 Sum_probs=47.2
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC--------------CCc-e-------eec
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG--------------GPV-E-------TIK 134 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~--------------~~~-e-------~i~ 134 (159)
+.+.+|+|.. ++|+...+..+-+. +--++.+||+.+|+|+|+.+.. |.. + .+.
T Consensus 319 ~v~~~W~PQ~---~vL~h~~v~~FvtH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQP---LILSHPSVGCFVSH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCHH---HHhcCcccCeEEec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 5666888876 56666544322222 1236899999999999997611 111 1 122
Q ss_pred cHHHHHHHHHHhcCH-HHHHHhhh
Q 036860 135 NEEFSLSMAKLIQEP-QMAKNMGE 157 (159)
Q Consensus 135 ~~~l~~~i~~l~~~~-~~~~~~~~ 157 (159)
.+++.+++++++.++ ++.+++++
T Consensus 394 ~e~i~~av~~vm~~~~~~g~~~r~ 417 (453)
T PLN02764 394 KESLRDAINSVMKRDSEIGNLVKK 417 (453)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHH
Confidence 289999999999764 33344433
No 146
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=94.87 E-value=0.062 Score=41.75 Aligned_cols=69 Identities=12% Similarity=-0.025 Sum_probs=47.3
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC--------------CCceee-------c
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG--------------GPVETI-------K 134 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~--------------~~~e~i-------~ 134 (159)
++.+.+|+|.. ++++...+..+-+. +--++++||+.+|+|+|+.+.. |....+ .
T Consensus 339 g~vv~~W~PQ~---~iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQA---EILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCHH---HHhCCcccCeeEec--CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 58888999976 67888776333222 1225899999999999998721 212111 1
Q ss_pred cHHHHHHHHHHhcCH
Q 036860 135 NEEFSLSMAKLIQEP 149 (159)
Q Consensus 135 ~~~l~~~i~~l~~~~ 149 (159)
.+++++++.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 189999999999763
No 147
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=94.68 E-value=0.64 Score=29.39 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHH------------------------------HHHHHHHhCcEEEeC--CCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTT------------------------------ERNALLFECLCVFYT--PKDE 105 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~------------------------------~l~~~~~~a~~~i~~--s~~e 105 (159)
.++++++.+.++..+++ |.|.+++++. ....++..||+++.- -.+.
T Consensus 8 tdWRe~I~~ga~~~~L~--v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYK 85 (141)
T PF11071_consen 8 TDWREEIKEGAKAAGLP--VEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYK 85 (141)
T ss_pred chHHHHHHHHHHHcCCC--eEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHH
Confidence 35788999999988886 8888887652 234788899988862 1122
Q ss_pred CCccH--HHHhhhcCCcEEEeCCCCC
Q 036860 106 HFGIV--PLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 106 ~~g~~--~lEama~G~Pvi~~~~~~~ 129 (159)
-|... .--|.+.|+|.|.-.....
T Consensus 86 QWNaAfDAg~a~AlgKplI~lh~~~~ 111 (141)
T PF11071_consen 86 QWNAAFDAGYAAALGKPLITLHPEEL 111 (141)
T ss_pred HHHHHhhHHHHHHcCCCeEEecchhc
Confidence 22211 3446899999999765443
No 148
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.59 E-value=0.27 Score=35.20 Aligned_cols=72 Identities=24% Similarity=0.047 Sum_probs=47.9
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++...+.|..+..+..+++....+....+.+.|..+-.|+..+++.||++|.+-. ..+-=|.++|+|+++--
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds-----g~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS-----GPMHLAAALGTPTVALF 224 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC-----HHHHHHHHcCCCEEEEE
Confidence 3444455655555555555554422334566788888899999999999997543 34444569999999854
No 149
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.51 E-value=1.1 Score=34.55 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC----------CCCCceeecc------HHHHHHHHHHhc
Q 036860 84 STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD----------SGGPVETIKN------EEFSLSMAKLIQ 147 (159)
Q Consensus 84 ~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~----------~~~~~e~i~~------~~l~~~i~~l~~ 147 (159)
+..|+..++++||++|-.=. -.++=|++.|+|+++-. .-|..+.+.+ +++.+.+.++++
T Consensus 317 ~~~e~~~iIs~~dl~ig~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 317 NDLEMGKILGACELTVGTRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred ChHHHHHHHhhCCEEEEecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 33455555566665553111 35788999999999965 2233444333 789999999999
Q ss_pred CHHHHH
Q 036860 148 EPQMAK 153 (159)
Q Consensus 148 ~~~~~~ 153 (159)
+.+.++
T Consensus 392 ~r~~~~ 397 (426)
T PRK10017 392 QLPALN 397 (426)
T ss_pred CHHHHH
Confidence 876544
No 150
>PLN02210 UDP-glucosyl transferase
Probab=94.39 E-value=0.089 Score=40.65 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=42.8
Q ss_pred EEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC--------------CCceee---------c
Q 036860 78 NFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG--------------GPVETI---------K 134 (159)
Q Consensus 78 ~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~--------------~~~e~i---------~ 134 (159)
.+.+|+|.. ++|+++.+..+-+. -|+ ++++||+++|+|+|+.+.. +..-.+ .
T Consensus 327 ~v~~w~PQ~---~iL~h~~vg~FitH-~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~ 401 (456)
T PLN02210 327 VVLEWSPQE---KILSHMAISCFVTH-CGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELK 401 (456)
T ss_pred EEEecCCHH---HHhcCcCcCeEEee-CCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCC
Confidence 345777665 56777763332222 112 5789999999999997611 222112 1
Q ss_pred cHHHHHHHHHHhcCHH
Q 036860 135 NEEFSLSMAKLIQEPQ 150 (159)
Q Consensus 135 ~~~l~~~i~~l~~~~~ 150 (159)
.+++++++++++.+++
T Consensus 402 ~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 402 VEEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHHHHhcCch
Confidence 1899999999997643
No 151
>PLN02554 UDP-glycosyltransferase family protein
Probab=94.22 E-value=0.22 Score=38.78 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=31.8
Q ss_pred cHHHHhhhcCCcEEEeCC--------------CCCce----------------eeccHHHHHHHHHHhc-CHHHHHH
Q 036860 109 IVPLEAMAAYKPVSACDS--------------GGPVE----------------TIKNEEFSLSMAKLIQ-EPQMAKN 154 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~~~--------------~~~~e----------------~i~~~~l~~~i~~l~~-~~~~~~~ 154 (159)
++++||+.+|+|+|+... -|... .+..+++.++|++++. ++..+++
T Consensus 371 nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 371 NSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred chHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHH
Confidence 589999999999999761 11111 1222899999999996 6544443
No 152
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.21 E-value=0.26 Score=38.35 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=28.7
Q ss_pred cEEEccCCCHHHHHHHHHh--CcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 76 RVNFITSCSTTERNALLFE--CLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~--a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++.+.+|+|.. ++|.+ +.+|+. . -| -++++||+++|+|+|+..
T Consensus 344 g~~v~~w~PQ~---~vL~h~~v~~fvt--H-~G-~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 344 GLVIRGWAPQV---AILSHRAVGAFLT--H-CG-WNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CEEecCCCCHH---HHhcCCCcCeEEe--c-CC-chHHHHHHHcCCCEEeCC
Confidence 46666777754 56665 334442 2 11 258999999999999976
No 153
>PLN02555 limonoid glucosyltransferase
Probab=94.06 E-value=0.24 Score=38.60 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=41.7
Q ss_pred CcEEEccCCCHHHHHHHHHh--CcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC--------------CCceee-----
Q 036860 75 DRVNFITSCSTTERNALLFE--CLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG--------------GPVETI----- 133 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~--a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~--------------~~~e~i----- 133 (159)
+++.+.+|+|.. ++|+. +.+|+. . -| -++.+||+.+|+|+|+.... ++...+
T Consensus 337 ~~g~v~~W~PQ~---~iL~H~~v~~Fvt--H-~G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~ 409 (480)
T PLN02555 337 DKGKIVQWCPQE---KVLAHPSVACFVT--H-CG-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEA 409 (480)
T ss_pred CceEEEecCCHH---HHhCCCccCeEEe--c-CC-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcc
Confidence 345555666654 34533 334442 1 11 35899999999999998721 222222
Q ss_pred -----ccHHHHHHHHHHhcCH
Q 036860 134 -----KNEEFSLSMAKLIQEP 149 (159)
Q Consensus 134 -----~~~~l~~~i~~l~~~~ 149 (159)
..+++.+++++++.++
T Consensus 410 ~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 410 ENKLITREEVAECLLEATVGE 430 (480)
T ss_pred ccCcCcHHHHHHHHHHHhcCc
Confidence 2289999999999754
No 154
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.41 E-value=1.4 Score=32.39 Aligned_cols=70 Identities=16% Similarity=0.037 Sum_probs=46.7
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
++...+.|.....+..++.....+ ...+.+.|..+-.++..++++|+++|..-. ..+-=|.|.|+|+|+-
T Consensus 207 ~~~ivl~G~~~e~~~~~~i~~~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-----Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 207 GYQVVLFGSAKDHPAGNEIEALLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-----GLMHVAAALNRPLVAL 276 (334)
T ss_pred CCEEEEEEChhhHHHHHHHHHhCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-----HHHHHHHHcCCCEEEE
Confidence 444555666555554444444322 123457788898999999999999996433 4555677889999874
No 155
>PLN03015 UDP-glucosyl transferase
Probab=93.39 E-value=0.25 Score=38.41 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=43.2
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc-cHHHHhhhcCCcEEEeCCC--------------CCce---------e
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFG-IVPLEAMAAYKPVSACDSG--------------GPVE---------T 132 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g-~~~lEama~G~Pvi~~~~~--------------~~~e---------~ 132 (159)
+.+.+|+|.. ++++...+..+-+. +| ++.+||+++|+|+|+.+.. ++.- .
T Consensus 337 l~v~~W~PQ~---~vL~h~~vg~fvtH---~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~ 410 (470)
T PLN03015 337 LVVTQWAPQV---EILSHRSIGGFLSH---CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKV 410 (470)
T ss_pred eEEEecCCHH---HHhccCccCeEEec---CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCc
Confidence 6677898876 45666555333222 23 5889999999999998621 1111 2
Q ss_pred eccHHHHHHHHHHhc
Q 036860 133 IKNEEFSLSMAKLIQ 147 (159)
Q Consensus 133 i~~~~l~~~i~~l~~ 147 (159)
+..+++++++++++.
T Consensus 411 v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 411 IGREEVASLVRKIVA 425 (470)
T ss_pred cCHHHHHHHHHHHHc
Confidence 222899999999995
No 156
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=93.38 E-value=2.4 Score=31.55 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=45.0
Q ss_pred cccccccccH-H-HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 49 GCDKLLRENV-E-YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 49 ~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
++...+.|.. + .....++..+....+..+.+.|..+-.++..+++.|+++|..-. ..+-=|.|.|+|+|+-
T Consensus 215 ~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDS-----Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 215 GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDS-----APAHIAAAVNTPLICL 287 (352)
T ss_pred CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCC-----HHHHHHHHcCCCEEEE
Confidence 4544555432 2 22333444443333334667899999999999999999996433 4555566788888873
No 157
>PLN02534 UDP-glycosyltransferase
Probab=93.35 E-value=0.26 Score=38.49 Aligned_cols=46 Identities=7% Similarity=-0.112 Sum_probs=32.4
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.++.+.||+|.. +++...++..+-+. +-.++++||+++|+|+|+..
T Consensus 344 ~g~~v~~w~pq~---~iL~h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 344 RGLLIKGWAPQV---LILSHPAIGGFLTH--CGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred CCeeccCCCCHH---HHhcCCccceEEec--CccHHHHHHHHcCCCEEecc
Confidence 457777888875 56777776333222 22368999999999999976
No 158
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.25 E-value=0.43 Score=38.13 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC-----------------------------CCCCceeec--c--
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD-----------------------------SGGPVETIK--N-- 135 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~-----------------------------~~~~~e~i~--~-- 135 (159)
.++++.||+.+..| |.+-+|++.+|+|.|+.- ..-.+|+++ +
T Consensus 483 ~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~ 557 (608)
T PRK01021 483 YELMRECDCALAKC-----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDF 557 (608)
T ss_pred HHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccC
Confidence 47778888777644 799999999999999842 234477772 3
Q ss_pred --HHHHHHHHHHhcCHHHHHHhhh
Q 036860 136 --EEFSLSMAKLIQEPQMAKNMGE 157 (159)
Q Consensus 136 --~~l~~~i~~l~~~~~~~~~~~~ 157 (159)
+.+++++ +++.|++.++++.+
T Consensus 558 tpe~La~~l-~lL~d~~~r~~~~~ 580 (608)
T PRK01021 558 QPEEVAAAL-DILKTSQSKEKQKD 580 (608)
T ss_pred CHHHHHHHH-HHhcCHHHHHHHHH
Confidence 8888886 88888876666543
No 159
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.15 E-value=2.4 Score=31.37 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=46.3
Q ss_pred cccccccccHH--HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 49 GCDKLLRENVE--YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 49 ~~~~~i~~~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
++...+.|... .....++.....+.+..+.+.|..+-.|+..+++.|+++|..-. ..+-=|.|.|+|+|+-
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DS-----Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDS-----VPMHMAAALGTPLVAL 285 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCC-----HHHHHHHHcCCCEEEE
Confidence 45555555432 22233343333333334567899899999999999999997433 5566678899999984
No 160
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.90 E-value=0.63 Score=37.40 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCC-CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC--------------C
Q 036860 62 EELKSLAERNGMS-DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD--------------S 126 (159)
Q Consensus 62 ~~~~~~~~~~~~~-~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~--------------~ 126 (159)
..++..+.++|++ ++|.|.+-...+|-.+-.+-+|+.+-+....|. .+-.|.+.+|+|+|+-. .
T Consensus 802 ~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~ 880 (966)
T KOG4626|consen 802 QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTA 880 (966)
T ss_pred HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHH
Confidence 6677888888884 678888877777777888999999987665543 34568899999999865 3
Q ss_pred CCCceeecc--HHHHHHHHHHhcCHHHHHHhhh
Q 036860 127 GGPVETIKN--EEFSLSMAKLIQEPQMAKNMGE 157 (159)
Q Consensus 127 ~~~~e~i~~--~~l~~~i~~l~~~~~~~~~~~~ 157 (159)
-|..+++.. ++..+.-.+|-.|.+.+++++.
T Consensus 881 ~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~ 913 (966)
T KOG4626|consen 881 LGLGHLIAKNREEYVQIAVRLATDKEYLKKLRA 913 (966)
T ss_pred cccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHH
Confidence 445555555 7777777777777777666553
No 161
>PLN02167 UDP-glycosyltransferase family protein
Probab=92.84 E-value=0.34 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.1
Q ss_pred cHHHHhhhcCCcEEEeCC--------------CCCc-e-----------eeccHHHHHHHHHHhcCH
Q 036860 109 IVPLEAMAAYKPVSACDS--------------GGPV-E-----------TIKNEEFSLSMAKLIQEP 149 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~~~--------------~~~~-e-----------~i~~~~l~~~i~~l~~~~ 149 (159)
++.+||+++|+|+|+... -+.. . .+..+++++++.+++.++
T Consensus 369 nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 369 NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 488999999999999761 0111 1 122289999999999754
No 162
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.77 E-value=3 Score=30.96 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=46.9
Q ss_pred cccccccccHHHHHHHHHHHHHcCCC---CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEE
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMS---DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~---~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~ 123 (159)
++...+.|.....+..++.....+.+ ..+.+.|..+-.++..+++.|+++|..-. ..+-=|.|.|+|+|+
T Consensus 213 ~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-----Gp~HlAaA~g~P~va 285 (348)
T PRK10916 213 GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-----GLMHVAAALNRPLVA 285 (348)
T ss_pred CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-----hHHHHHHHhCCCEEE
Confidence 45555666665555555554443221 12566788888999999999999996433 455567788888887
No 163
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.57 E-value=0.39 Score=37.27 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHH-cCCCCcEEEc-cCCC---HHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCC-cEEEeCC
Q 036860 58 VEYLEELKSLAER-NGMSDRVNFI-TSCS---TTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYK-PVSACDS 126 (159)
Q Consensus 58 ~~~~~~~~~~~~~-~~~~~~v~~~-g~~~---~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~-Pvi~~~~ 126 (159)
+..+..+.++.++ .+...-+.+. |... .....+.++++..++.|.-.+...-.++||+.+|| |||.++.
T Consensus 302 ~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 302 GQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred CcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC
Confidence 4456666666665 1111122232 2222 35677999999999999999999999999999999 9999984
No 164
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.09 E-value=2 Score=27.25 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHH------------------------------HHHHHHHhCcEEEeC--CCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTT------------------------------ERNALLFECLCVFYT--PKDE 105 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~------------------------------~l~~~~~~a~~~i~~--s~~e 105 (159)
.++++++.+.+++.+++ |.|.+++.+. ....++..||+++.- -.|.
T Consensus 11 tdWRe~I~~ga~~~~L~--v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYK 88 (144)
T TIGR03646 11 TDWREEIKEGAKSKNLP--IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYK 88 (144)
T ss_pred chHHHHHHHHHHHcCCC--eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHH
Confidence 36788999999988886 8888877652 245788899988862 1122
Q ss_pred CCccH--HHHhhhcCCcEEEeCCCCC
Q 036860 106 HFGIV--PLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 106 ~~g~~--~lEama~G~Pvi~~~~~~~ 129 (159)
-|.-. .--|.+.|+|.|.-.....
T Consensus 89 QWNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 89 QWNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred HHHHHhhHHHHHHcCCCeEEecchhc
Confidence 22111 2445899999998765443
No 165
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=91.57 E-value=2.4 Score=31.57 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 90 ALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 90 ~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+++..||++|- +-|.-..||...|+|.|++-.+
T Consensus 244 ~Ll~~a~l~Ig-----~ggTMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 244 DLLYYADLVIG-----GGGTMAREAALLGTPAISCFPG 276 (335)
T ss_pred HHHHhcCEEEe-----CCcHHHHHHHHhCCCEEEecCC
Confidence 44444555542 3456789999999999997543
No 166
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.53 E-value=1.7 Score=30.40 Aligned_cols=70 Identities=21% Similarity=0.054 Sum_probs=43.0
Q ss_pred cccccccccHHH-HHHH-HHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 49 GCDKLLRENVEY-LEEL-KSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 49 ~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
++...+.|.... ..+. .+..+.... ..+.+.|..+-.++..+++.||++|.+-. ..+-=|.|.|+|+|+-
T Consensus 137 ~~~vvl~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~e~~ali~~a~~~I~~Dt-----g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 137 GYRVVLLGGPEEQEKEIADQIAAGLQN-PVINLAGKTSLRELAALISRADLVIGNDT-----GPMHLAAALGTPTVAL 208 (247)
T ss_dssp T-EEEE--SSHHHHHHHHHHHHTTHTT-TTEEETTTS-HHHHHHHHHTSSEEEEESS-----HHHHHHHHTT--EEEE
T ss_pred CceEEEEccchHHHHHHHHHHHHhccc-ceEeecCCCCHHHHHHHHhcCCEEEecCC-----hHHHHHHHHhCCEEEE
Confidence 444445555444 2333 333332221 26888899999999999999999997443 5666788899999986
No 167
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=91.47 E-value=0.72 Score=35.79 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=29.3
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++|.+.+|+|..++. +..-.+-.+-+ .-|++ +.+|++.+|+|+|+.+
T Consensus 335 ~nV~~~~W~PQ~~ll--l~H~~v~~FvT-HgG~n-St~E~~~~GvP~v~~P 381 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLL--LDHPAVGGFVT-HGGWN-STLESIYSGVPMVCVP 381 (496)
T ss_pred CceEEecCCCcHHHh--cCCCcCcEEEE-CCccc-HHHHHHhcCCceecCC
Confidence 468888999987654 22222222212 22333 4599999999999754
No 168
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.07 E-value=0.43 Score=34.08 Aligned_cols=34 Identities=29% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 87 ERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 87 ~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.+.+++..||.++.-+ +.+.+||+..|+||++..
T Consensus 192 ~~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 192 NLYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFG 225 (269)
T ss_pred CHHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEec
Confidence 3467788888777533 478999999999999975
No 169
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.40 E-value=2 Score=31.66 Aligned_cols=51 Identities=20% Similarity=0.075 Sum_probs=36.7
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
..+.+...-+..-+..+|+.||.++.+.-. -.-+.||.++|+||......+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DS---vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDS---VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCcc---HHHHHHHHHcCCCEEEecCCC
Confidence 455444444445577899999999886541 123689999999999998775
No 170
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.74 E-value=3.7 Score=29.62 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=43.4
Q ss_pred ccccHHHHHHHHHHHHH-cCCCCcEEEccCC-CHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCC
Q 036860 54 LRENVEYLEELKSLAER-NGMSDRVNFITSC-STTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~-~~~~~~v~~~g~~-~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~ 129 (159)
+.-.+...+..+..++. ++....+.|-+.- ...-...+++.||+++.+.-.- .-.-||.++|+||.+....+.
T Consensus 202 isfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 202 ISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred EEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEecCCc
Confidence 33334445566666655 3333333333321 2224568999999999754411 235799999999998765544
No 171
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.81 E-value=7.4 Score=28.39 Aligned_cols=69 Identities=22% Similarity=0.068 Sum_probs=44.1
Q ss_pred ccccccc-ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 49 GCDKLLR-ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 49 ~~~~~i~-~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++...+. |........+++.+..+ +..+.|..+-.++..++++|+++|..-. ..+-=|.+.|+|+|+--
T Consensus 211 ~~~~vl~~g~~~e~~~~~~i~~~~~---~~~l~g~~sL~el~ali~~a~l~I~~DS-----gp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 211 GLQIVLPWGNDAEKQRAERIAEALP---GAVVLPKMSLAEVAALLAGADAVVGVDT-----GLTHLAAALDKPTVTLY 280 (319)
T ss_pred CCeEEEeCCCHHHHHHHHHHHhhCC---CCeecCCCCHHHHHHHHHcCCEEEeCCC-----hHHHHHHHcCCCEEEEE
Confidence 3434444 43334444444444322 2356788888899999999999996443 45555778899999843
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=88.78 E-value=3.7 Score=30.10 Aligned_cols=68 Identities=18% Similarity=0.063 Sum_probs=46.8
Q ss_pred ccccccc-ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 49 GCDKLLR-ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 49 ~~~~~i~-~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
++...+. |.....+..++..+. . ..+.+.|..+-.|+..+++.||++|..-. ..+-=|.|+|+|+|+-
T Consensus 210 ~~~ivl~~G~~~e~~~~~~i~~~--~-~~~~l~g~~sL~elaali~~a~l~I~nDS-----Gp~HlA~A~g~p~val 278 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKRLAEG--F-PYVEVLPKLSLEQVARVLAGAKAVVSVDT-----GLSHLTAALDRPNITL 278 (322)
T ss_pred CCeEEEeCCCHHHHHHHHHHHcc--C-CcceecCCCCHHHHHHHHHhCCEEEecCC-----cHHHHHHHhCCCEEEE
Confidence 4444453 544444444444432 1 34777898899999999999999996443 5666788899999984
No 173
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=87.65 E-value=2.4 Score=34.92 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=63.1
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcC----CcEEEeCCCCCceeecc----------HHHHHHH
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAY----KPVSACDSGGPVETIKN----------EEFSLSM 142 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G----~Pvi~~~~~~~~e~i~~----------~~l~~~i 142 (159)
+.+.-.++..++..++.-+|+++..+..+|+.++.+|+..|. ++.|.+..-|..+..++ +.++..|
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i 434 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILI 434 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccCEEECCcchHHHHHHH
Confidence 445578899999999999999999999999999999998874 66777776666666644 8889999
Q ss_pred HHHhcCHHHHHHh
Q 036860 143 AKLIQEPQMAKNM 155 (159)
Q Consensus 143 ~~l~~~~~~~~~~ 155 (159)
...++.++.-.++
T Consensus 435 ~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 435 SKALTMSDEEREL 447 (732)
T ss_pred HHHhhcCHHHHhh
Confidence 8888755544433
No 174
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.59 E-value=4.8 Score=29.81 Aligned_cols=70 Identities=20% Similarity=-0.006 Sum_probs=50.8
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++...+.|..+..+..+++.+..+. .+.+.|..+-.|+..++..||++|.+.. ..+-=|.|.|+|+|+--
T Consensus 208 ~~~Vvl~g~~~e~e~~~~i~~~~~~--~~~l~~k~sL~e~~~li~~a~l~I~~DS-----g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 208 GYQVVLFGGPDEEERAEEIAKGLPN--AVILAGKTSLEELAALIAGADLVIGNDS-----GPMHLAAALGTPTIALY 277 (334)
T ss_pred CCEEEEecChHHHHHHHHHHHhcCC--ccccCCCCCHHHHHHHHhcCCEEEccCC-----hHHHHHHHcCCCEEEEE
Confidence 5455555666666666666665542 2338899999999999999999986544 45666788999999954
No 175
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=84.50 E-value=9.2 Score=28.39 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=59.6
Q ss_pred cccccccHHHHHHHHHHHHHcCCCCcEEEccC-CCH-----------HHHHHHHHhCcEEEe--CCCCCCCccH---HHH
Q 036860 51 DKLLRENVEYLEELKSLAERNGMSDRVNFITS-CST-----------TERNALLFECLCVFY--TPKDEHFGIV---PLE 113 (159)
Q Consensus 51 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~-----------~~l~~~~~~a~~~i~--~s~~e~~g~~---~lE 113 (159)
..-+.|-|..-..+.+.++.++.+ |..+.. .+. ..+.+++++||++.+ |...|..|+. -+.
T Consensus 144 TvGIiG~G~IG~~va~~l~afgm~--v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 144 TVGIIGLGRIGRAVAKRLKAFGMK--VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe--EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 344668888888999999988863 555544 332 348899999999885 6666776654 566
Q ss_pred hhhcCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 114 AMAAYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 114 ama~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
.|--|.-.|-+..|+ ++.+++|.+++.
T Consensus 222 ~MK~gailIN~aRG~---vVde~aL~~AL~ 248 (324)
T COG0111 222 KMKPGAILINAARGG---VVDEDALLAALD 248 (324)
T ss_pred hCCCCeEEEECCCcc---eecHHHHHHHHH
Confidence 676666455455555 444466666665
No 176
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=83.76 E-value=5.1 Score=27.91 Aligned_cols=45 Identities=20% Similarity=0.002 Sum_probs=35.8
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
.......+..++..++++|+++|.... -..+=|+++|+|+|+-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~Is~Rl-----H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 240 IIIDYSLSPDELLELISQADLVISMRL-----HGAILALSLGVPVIAISY 284 (286)
T ss_pred eEecCCCCHHHHHHHHhcCCEEEecCC-----HHHHHHHHcCCCEEEEec
Confidence 444466778889999999999997555 567889999999998654
No 177
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=82.41 E-value=0.85 Score=28.60 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=47.7
Q ss_pred cccc-HHHHHHHHHHHHHcCCCCcEEEccCCC------------------------HHHHHHHHHhCcEEEeCCCCCCCc
Q 036860 54 LREN-VEYLEELKSLAERNGMSDRVNFITSCS------------------------TTERNALLFECLCVFYTPKDEHFG 108 (159)
Q Consensus 54 i~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~------------------------~~~l~~~~~~a~~~i~~s~~e~~g 108 (159)
+.|. |.+-..+.+.+.+.. .+.+.+.+. ..++.+++..+|++|-.|..+..-
T Consensus 5 i~G~~GrMG~~i~~~i~~~~---~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~ 81 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESP---GFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDAVY 81 (124)
T ss_dssp EETTTSHHHHHHHHHHHHST---TEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHHHH
T ss_pred EECCCCHHHHHHHHHHHhcC---CcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHHhH
Confidence 4566 777777877777632 244443221 145789999999999888666555
Q ss_pred cHHHHhhhcCCcEEEeCCCCCce
Q 036860 109 IVPLEAMAAYKPVSACDSGGPVE 131 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~~~~~~~e 131 (159)
-.+-.++..|+|+|..-.|...+
T Consensus 82 ~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 82 DNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp HHHHHHHHHT-EEEEE-SSSHHH
T ss_pred HHHHHHHhCCCCEEEECCCCCHH
Confidence 56677788999999977776433
No 178
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=81.45 E-value=18 Score=26.21 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHH----HHHHHHhCcEEEeCCCC---CCCccHHHHhhhcCCcEEEeC-----C
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTE----RNALLFECLCVFYTPKD---EHFGIVPLEAMAAYKPVSACD-----S 126 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~----l~~~~~~a~~~i~~s~~---e~~g~~~lEama~G~Pvi~~~-----~ 126 (159)
...+.+++.++++++. +....--+..+ +..+-...|+++++... ..+......+...++|++++. .
T Consensus 147 ~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~ 224 (294)
T PF04392_consen 147 AQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSDFYVKA 224 (294)
T ss_dssp HHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSHHHHCT
T ss_pred HHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCHHHhcC
Confidence 4566777778887764 33222223333 33445567888776542 333445567788999999976 4
Q ss_pred CCCceeecc-----HHHHHHHHHHhcC
Q 036860 127 GGPVETIKN-----EEFSLSMAKLIQE 148 (159)
Q Consensus 127 ~~~~e~i~~-----~~l~~~i~~l~~~ 148 (159)
|++..+..+ ...++...++++.
T Consensus 225 Gal~~~~~~~~~~G~~Aa~~a~~IL~G 251 (294)
T PF04392_consen 225 GALGGYSVDYYEQGRQAAEMAVRILKG 251 (294)
T ss_dssp T-SEEEE--HHHHHHHHHHHHHHHCTT
T ss_pred CcEEEEccCHHHHHHHHHHHHHHHHCC
Confidence 555555555 6666666777764
No 179
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=80.88 E-value=9.8 Score=28.01 Aligned_cols=86 Identities=9% Similarity=0.114 Sum_probs=57.7
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCC--------CHHHHHHHHHhCcEEEe--CCCCCC---CccHHHHhhhcCC
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSC--------STTERNALLFECLCVFY--TPKDEH---FGIVPLEAMAAYK 119 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~--------~~~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEama~G~ 119 (159)
.+.|-|..-..+.++++.++. +|..+... ...++.++++.||++++ |...+. ++-..++.|--|.
T Consensus 149 GIiG~G~IG~~vA~~~~~fgm--~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a 226 (311)
T PRK08410 149 GIIGLGTIGKRVAKIAQAFGA--KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGA 226 (311)
T ss_pred EEECCCHHHHHHHHHHhhcCC--EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCe
Confidence 355777778888888888776 35554321 12367899999998885 555555 4456788887777
Q ss_pred cEEEeCCCCCceeeccHHHHHHHH
Q 036860 120 PVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 120 Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
-+|-+..|++ +.+++|.+++.
T Consensus 227 ~lIN~aRG~v---VDe~AL~~AL~ 247 (311)
T PRK08410 227 ILINVGRGGI---VNEKDLAKALD 247 (311)
T ss_pred EEEECCCccc---cCHHHHHHHHH
Confidence 7777776664 44466666654
No 180
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=80.07 E-value=8.7 Score=25.62 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=61.8
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCH------------HHHHHHHHhCcEEEe--CCCCCC---CccHH
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCST------------TERNALLFECLCVFY--TPKDEH---FGIVP 111 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~------------~~l~~~~~~a~~~i~--~s~~e~---~g~~~ 111 (159)
+....+.|-|..-..+-++++.++. +|..+..... .++.++++.||++++ |...+. ++-..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 5666778999999999999998886 4666654443 246789999999886 444444 44568
Q ss_pred HHhhhcCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 112 LEAMAAYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 112 lEama~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
++.|--|.-+|-+..| +++.++++.+++.
T Consensus 114 l~~mk~ga~lvN~aRG---~~vde~aL~~aL~ 142 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARG---ELVDEDALLDALE 142 (178)
T ss_dssp HHTSTTTEEEEESSSG---GGB-HHHHHHHHH
T ss_pred eeccccceEEEeccch---hhhhhhHHHHHHh
Confidence 8888888877776665 4455566666664
No 181
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=79.63 E-value=13 Score=26.83 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=23.4
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
+++..++++|+++|-... -..+=|+++|+|+++-.
T Consensus 242 ~e~~~~i~~~~~vI~~Rl-----H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 242 EELLGLFASARLVIGMRL-----HALILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHHHhhCCEEEEech-----HHHHHHHHcCCCEEEee
Confidence 345556666666664332 45788999999999764
No 182
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=77.76 E-value=29 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=30.4
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.+|.+...-..+++...+++||+.|-.=. -+++=||+.|+|+|+-.
T Consensus 266 ~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-----HsaI~al~~g~p~i~i~ 311 (385)
T COG2327 266 AEILVSSDEYAEELGGILAACDLIVGMRL-----HSAIMALAFGVPAIAIA 311 (385)
T ss_pred cceEeecchHHHHHHHHhccCceEEeehh-----HHHHHHHhcCCCeEEEe
Confidence 45555543334566667777777764211 35788999999999965
No 183
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=77.37 E-value=23 Score=26.85 Aligned_cols=37 Identities=16% Similarity=-0.023 Sum_probs=23.3
Q ss_pred HHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 88 RNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 88 l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
+..++..|+..+.-.- -+++.|-+++|||.+.-+...
T Consensus 288 ~~~ll~gA~~vVSm~G----YNTvCeILs~~k~aLivPr~~ 324 (400)
T COG4671 288 FESLLAGARLVVSMGG----YNTVCEILSFGKPALIVPRAA 324 (400)
T ss_pred HHHHHHhhheeeeccc----chhhhHHHhCCCceEEeccCC
Confidence 3444555555443211 267899999999998876433
No 184
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=76.88 E-value=14 Score=23.97 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=57.2
Q ss_pred EEEecCCccccccCCCCCcccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCc-----EEEeCCCCC
Q 036860 31 VVLYLAVNVYQFDKPHSCGCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECL-----CVFYTPKDE 105 (159)
Q Consensus 31 ~vi~~~vd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~-----~~i~~s~~e 105 (159)
..+-||.++..+-...+.-|... --.+....+++.++..+. .+.|.-.=...++.+++..+. +++.|.-+-
T Consensus 4 ilvlNGPNLN~LG~Rep~iYG~~--tl~~i~~~~~~~a~~~g~--~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 4 ILVLNGPNLNLLGTREPEIYGST--TLADIEALLEEEAAELGV--ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred EEEEeCCCccccCCCCCCcCCCC--CHHHHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 36667777766554433322110 012344566666666665 377766556667888887763 566677778
Q ss_pred CCccHHHHhh-hcCCcEEEe
Q 036860 106 HFGIVPLEAM-AAYKPVSAC 124 (159)
Q Consensus 106 ~~g~~~lEam-a~G~Pvi~~ 124 (159)
.++..+.+|+ +.++|+|=-
T Consensus 80 HtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK05395 80 HTSVALRDALAAVSIPVIEV 99 (146)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 8899999996 578898864
No 185
>PRK06932 glycerate dehydrogenase; Provisional
Probab=76.58 E-value=14 Score=27.29 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcEEEccCCC-------HHHHHHHHHhCcEEEe--CCCCCCC---ccHHHHhhhcCCcE
Q 036860 54 LRENVEYLEELKSLAERNGMSDRVNFITSCS-------TTERNALLFECLCVFY--TPKDEHF---GIVPLEAMAAYKPV 121 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-------~~~l~~~~~~a~~~i~--~s~~e~~---g~~~lEama~G~Pv 121 (159)
+.|-|..-..+.++++.++. +|..+.... ..++.++++.||++++ |...+.. +-..++.|--|.-+
T Consensus 152 IiG~G~IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~l 229 (314)
T PRK06932 152 VFGKGCLGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFL 229 (314)
T ss_pred EECCCHHHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEE
Confidence 55777777888888888776 355543221 2357899999999886 4444554 45678888878777
Q ss_pred EEeCCCCCceeeccHHHHHHHH
Q 036860 122 SACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 122 i~~~~~~~~e~i~~~~l~~~i~ 143 (159)
|-+..|++ +.+++|.+++.
T Consensus 230 IN~aRG~~---Vde~AL~~aL~ 248 (314)
T PRK06932 230 INTGRGPL---VDEQALLDALE 248 (314)
T ss_pred EECCCccc---cCHHHHHHHHH
Confidence 77777664 34466666554
No 186
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=76.44 E-value=7.4 Score=25.72 Aligned_cols=33 Identities=21% Similarity=0.023 Sum_probs=23.0
Q ss_pred HhCcEEEeCCC----CCCCcc--HHHHhhhcCCcEEEeC
Q 036860 93 FECLCVFYTPK----DEHFGI--VPLEAMAAYKPVSACD 125 (159)
Q Consensus 93 ~~a~~~i~~s~----~e~~g~--~~lEama~G~Pvi~~~ 125 (159)
..+|++|+--. .+|-|+ .+.+|++.|+|||+.-
T Consensus 92 ~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 92 EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 33777776322 244444 5899999999999974
No 187
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=76.11 E-value=4 Score=26.14 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=17.5
Q ss_pred HHHhhhcCCcEEE-eCCCCCceeecc
Q 036860 111 PLEAMAAYKPVSA-CDSGGPVETIKN 135 (159)
Q Consensus 111 ~lEama~G~Pvi~-~~~~~~~e~i~~ 135 (159)
+-.-...|+|+|. ||+...++.+..
T Consensus 69 i~~I~~~G~PviVAtDV~p~P~~V~K 94 (138)
T PF04312_consen 69 IEWISEYGKPVIVATDVSPPPETVKK 94 (138)
T ss_pred HHHHHHcCCEEEEEecCCCCcHHHHH
Confidence 3344567888765 688888877776
No 188
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=75.31 E-value=14 Score=23.96 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=46.9
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC-CCCceeecc--HHHHHHHHH
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS-GGPVETIKN--EEFSLSMAK 144 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~-~~~~e~i~~--~~l~~~i~~ 144 (159)
.+.+|+--..++.++.+.|.+++. .. | -.+++.++..++|.|.... .-..|.+++ -+++.++.+
T Consensus 48 l~v~~F~~~~kiQsli~darIVIS-Ha--G-~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae 114 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDARIVIS-HA--G-EGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE 114 (161)
T ss_pred cEEEeechHHHHHHHhhcceEEEe-cc--C-cchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh
Confidence 678889888999999999997764 21 1 2478999999999888654 446677777 555555544
No 189
>PRK06487 glycerate dehydrogenase; Provisional
Probab=75.24 E-value=14 Score=27.33 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=56.7
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcEEEccCC------CHHHHHHHHHhCcEEEe--CCCCCC---CccHHHHhhhcCCcEE
Q 036860 54 LRENVEYLEELKSLAERNGMSDRVNFITSC------STTERNALLFECLCVFY--TPKDEH---FGIVPLEAMAAYKPVS 122 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~------~~~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEama~G~Pvi 122 (159)
+.|-|..-..+.++++.++. +|..+... ...++.++++.||++++ |...+. ++-..+..|--|.-+|
T Consensus 153 IiG~G~IG~~vA~~l~~fgm--~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI 230 (317)
T PRK06487 153 LLGHGELGGAVARLAEAFGM--RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLI 230 (317)
T ss_pred EECCCHHHHHHHHHHhhCCC--EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE
Confidence 45777778888888888776 35544321 22357899999999886 444454 4456788888787777
Q ss_pred EeCCCCCceeeccHHHHHHHH
Q 036860 123 ACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 123 ~~~~~~~~e~i~~~~l~~~i~ 143 (159)
-+..|++ +.+++|.+++.
T Consensus 231 N~aRG~v---Vde~AL~~AL~ 248 (317)
T PRK06487 231 NTARGGL---VDEQALADALR 248 (317)
T ss_pred ECCCccc---cCHHHHHHHHH
Confidence 7776664 34466666554
No 190
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=74.99 E-value=6.8 Score=30.25 Aligned_cols=64 Identities=20% Similarity=0.123 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEE
Q 036860 56 ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~ 123 (159)
|..+..++++++++..|...-+..+|.+....+ .-|...|+|++-+... +++..+-++=+|+|+
T Consensus 280 g~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKL-AnF~eIDvfV~iaCp~---lsid~s~~F~kPilt 343 (453)
T KOG2648|consen 280 GNREVLEHLRKLLKAAGKKSYVLALGEINPAKL-ANFPEIDVFVQIACPR---LSIDWSKEFYKPLLT 343 (453)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEecCCCHHHh-cCCccccEEEEEeCcc---cchhhhhhhcccccc
Confidence 667888999999999998888888899988766 4555699999855432 344444444444443
No 191
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=74.97 E-value=11 Score=26.39 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCcc
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGI 109 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~ 109 (159)
..-..+..+++++.|..-.+.+-+.-|-+.+..++...|.+++-|.+-|||.
T Consensus 95 ~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgG 146 (220)
T COG0036 95 TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGG 146 (220)
T ss_pred CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcc
Confidence 3445677788888888888999999999999999999999998898888874
No 192
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=74.40 E-value=21 Score=23.12 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=55.9
Q ss_pred EEecCCccccccCCCCCcccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEeCCCCCC
Q 036860 32 VLYLAVNVYQFDKPHSCGCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----L-CVFYTPKDEH 106 (159)
Q Consensus 32 vi~~~vd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~-~~i~~s~~e~ 106 (159)
.+-||.++..+-...+.-|... --.+....+++.+.+++. .+.|.-.=...++.+++..+ | +++.|.-+-.
T Consensus 3 lvlnGPNLNlLG~REp~iYG~~--tl~di~~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 78 (141)
T TIGR01088 3 LVLNGPNLNMLGLREPGVYGSQ--TLEEIVEIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTH 78 (141)
T ss_pred EEEeCCCccccCCCCCCcCCCC--CHHHHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhh
Confidence 4556766665544433322110 012345566666776665 37776655667788888776 3 5666877888
Q ss_pred CccHHHHhh-hcCCcEEEe
Q 036860 107 FGIVPLEAM-AAYKPVSAC 124 (159)
Q Consensus 107 ~g~~~lEam-a~G~Pvi~~ 124 (159)
++.++.+|+ +.++|+|=-
T Consensus 79 tSiAl~DAl~~~~~P~vEV 97 (141)
T TIGR01088 79 TSVALRDALAAVSLPVVEV 97 (141)
T ss_pred hHHHHHHHHHcCCCCEEEE
Confidence 899999996 578898863
No 193
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=73.84 E-value=10 Score=31.75 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=51.9
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
+|.|+....-.--..++..||+-...|. .|..|..-.-+|.-|.+.+++--|...|+.++
T Consensus 607 kVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~ 668 (794)
T TIGR02093 607 KVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREE 668 (794)
T ss_pred eEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHH
Confidence 6999988877767799999999998776 59999999999999999999988887777754
No 194
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=72.44 E-value=4.3 Score=26.61 Aligned_cols=44 Identities=11% Similarity=-0.077 Sum_probs=32.0
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
|....+-| .+.++++.||++|. . +-..+.+|.+..|+|.|+--.
T Consensus 65 id~y~f~p--sl~e~I~~AdlVIs--H--AGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 65 IDGYDFSP--SLTEDIRSADLVIS--H--AGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred EEEEecCc--cHHHHHhhccEEEe--c--CCcchHHHHHHcCCCEEEEeC
Confidence 44444554 45799999999985 1 224689999999999987543
No 195
>PLN02928 oxidoreductase family protein
Probab=71.94 E-value=20 Score=26.93 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=57.9
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccCC------------------------CHHHHHHHHHhCcEEEe--CCC
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITSC------------------------STTERNALLFECLCVFY--TPK 103 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~------------------------~~~~l~~~~~~a~~~i~--~s~ 103 (159)
-...+.|-|..-..+.+.+..+|. +|..+..- +..++.++++.||++++ |..
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence 334466888888888888888775 35544321 22357799999999886 434
Q ss_pred CCCC---ccHHHHhhhcCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 104 DEHF---GIVPLEAMAAYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 104 ~e~~---g~~~lEama~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
.+.- +-..+..|--|.-+|-+..|+ ++.+++|.+++.
T Consensus 238 ~~T~~li~~~~l~~Mk~ga~lINvaRG~---lVde~AL~~AL~ 277 (347)
T PLN02928 238 KETAGIVNDEFLSSMKKGALLVNIARGG---LLDYDAVLAALE 277 (347)
T ss_pred hHhhcccCHHHHhcCCCCeEEEECCCcc---ccCHHHHHHHHH
Confidence 4443 445788887777677666654 444466666664
No 196
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=71.59 E-value=11 Score=31.34 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
..+...++..+...+|.|+....-.--..++..||+-...|. .|..|.+-.-++.-|.+.|+|--|...|+.+
T Consensus 544 k~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e 618 (750)
T COG0058 544 KLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYE 618 (750)
T ss_pred HHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHH
Confidence 334444444444567999998877766789999999998765 5999999999999999999999888888884
No 197
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=71.56 E-value=23 Score=23.05 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=55.3
Q ss_pred EEEecCCccccccCCCCCcccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEeCCCCC
Q 036860 31 VVLYLAVNVYQFDKPHSCGCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----L-CVFYTPKDE 105 (159)
Q Consensus 31 ~vi~~~vd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~-~~i~~s~~e 105 (159)
..+-||.++..+-..++.-|... .-.+....+++.+++++. .+.|.-.=...++.+++.++ | +.+.|.-+-
T Consensus 4 ilvinGPNLN~LG~REp~iYG~~--tl~~i~~~~~~~a~~~g~--~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 4 ILVLNGPNLNLLGTREPAIYGHE--TLADVEALCRAAAEALGL--EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred EEEEeCCCccccCCCCCCcCCCC--CHHHHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 35667777766555433322110 012344566666666665 36666555556677766655 3 555677778
Q ss_pred CCccHHHHhh-hcCCcEEEe
Q 036860 106 HFGIVPLEAM-AAYKPVSAC 124 (159)
Q Consensus 106 ~~g~~~lEam-a~G~Pvi~~ 124 (159)
.++.++.+|+ +.++|+|=-
T Consensus 80 HtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK13015 80 HTSVAIRDALAALELPVIEV 99 (146)
T ss_pred hhHHHHHHHHHcCCCCEEEE
Confidence 8899999996 578898863
No 198
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=71.23 E-value=9.1 Score=31.58 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=47.2
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
+|.|+....-.--..++..+|+-...|+ .|..|.+-.-+|.-|.+.+++--|...|+.+.
T Consensus 524 kVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~ 585 (713)
T PF00343_consen 524 KVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEA 585 (713)
T ss_dssp EEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHH
T ss_pred eEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHh
Confidence 6899998887777899999999998776 59999999999999999999998888887653
No 199
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=71.17 E-value=7.9 Score=28.98 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=50.2
Q ss_pred cEEEccCC------CHHHHHHHHHhCcEEEeCCC--CCCCc-cHHHHhhhcCCcEEEeC--CCCCceeecc---------
Q 036860 76 RVNFITSC------STTERNALLFECLCVFYTPK--DEHFG-IVPLEAMAAYKPVSACD--SGGPVETIKN--------- 135 (159)
Q Consensus 76 ~v~~~g~~------~~~~l~~~~~~a~~~i~~s~--~e~~g-~~~lEama~G~Pvi~~~--~~~~~e~i~~--------- 135 (159)
.|...|.. +.....+++++....+..-. .+++= =++.+|+..|+..|... .....+++..
T Consensus 203 ~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df 282 (349)
T PF00852_consen 203 PVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDF 282 (349)
T ss_dssp -EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGS
T ss_pred CeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcC
Confidence 48888887 22346688888888876322 23333 36889999999666655 4555555544
Q ss_pred ---HHHHHHHHHHhcCHHHHHHh
Q 036860 136 ---EEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 136 ---~~l~~~i~~l~~~~~~~~~~ 155 (159)
++|++-|..+-+|++++.+.
T Consensus 283 ~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 283 KSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp SSHHHHHHHHHHHHT-HHHHH--
T ss_pred CCHHHHHHHHHHHhcCHHHHhhh
Confidence 99999999999999888753
No 200
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=70.46 E-value=2.8 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 89 NALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
.++++.||+.+..| |.+-+|++.+|+|.|..-
T Consensus 230 ~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 230 HKALLEAEFAFICS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred HHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEEE
Confidence 34566666666533 677889999999999864
No 201
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=69.96 E-value=16 Score=24.42 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHcCCCCc------EEEccCCC---HHHH----HHHHHhCcEEEe---CCCCCCCccHHHH---hhhc
Q 036860 57 NVEYLEELKSLAERNGMSDR------VNFITSCS---TTER----NALLFECLCVFY---TPKDEHFGIVPLE---AMAA 117 (159)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~------v~~~g~~~---~~~l----~~~~~~a~~~i~---~s~~e~~g~~~lE---ama~ 117 (159)
.....+++++++.+.+.... +.+.+--+ ...+ ...+.+||++|. |-+.+.=+.++.| +.|.
T Consensus 18 ~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al 97 (172)
T COG3613 18 EIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL 97 (172)
T ss_pred HHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc
Confidence 34556777888888775321 11111111 1111 267889998885 3333444555555 5899
Q ss_pred CCcEEEeCCCC
Q 036860 118 YKPVSACDSGG 128 (159)
Q Consensus 118 G~Pvi~~~~~~ 128 (159)
|+||.+.....
T Consensus 98 gKPv~~~~~d~ 108 (172)
T COG3613 98 GKPVYAYRKDA 108 (172)
T ss_pred CCceEEEeecc
Confidence 99999986543
No 202
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=69.87 E-value=35 Score=25.43 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=59.1
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCCCH-----------HHHHHHHHhCcEEEe--CCCCCCCcc---HHHHhhh
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSCST-----------TERNALLFECLCVFY--TPKDEHFGI---VPLEAMA 116 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-----------~~l~~~~~~a~~~i~--~s~~e~~g~---~~lEama 116 (159)
.+.|-|..-..+.+.++.++. +|.++...++ -++.+++.+||++++ |...+..++ ..++.|-
T Consensus 150 GIiG~GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk 227 (324)
T COG1052 150 GIIGLGRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMK 227 (324)
T ss_pred EEECCCHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCC
Confidence 355777778888888886665 4666654431 126799999998885 666676655 5788888
Q ss_pred cCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 117 AYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 117 ~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
-|.-+|-+..|++ +..+++.++|+
T Consensus 228 ~ga~lVNtaRG~~---VDe~ALi~AL~ 251 (324)
T COG1052 228 PGAILVNTARGGL---VDEQALIDALK 251 (324)
T ss_pred CCeEEEECCCccc---cCHHHHHHHHH
Confidence 8887887777764 33366666654
No 203
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=69.76 E-value=45 Score=25.41 Aligned_cols=83 Identities=16% Similarity=0.017 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHH
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEE 137 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~ 137 (159)
...+++++.+.+|+.-+..+.+..+-+++.. +.+|.+.+..+. .++....+.| .+|+|.+....-|+.+. +.
T Consensus 174 d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~niv~~~--~~~~~~a~~L~~r~GiP~~~~~p~G~~~t---~~ 247 (406)
T cd01967 174 DAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKLNLVHCS--RSMNYLAREMEERYGIPYMEVNFYGFEDT---SE 247 (406)
T ss_pred hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCEEEEECh--HHHHHHHHHHHHhhCCCEEEecCCcHHHH---HH
Confidence 3467788888888876666777777777765 666665554332 1344444444 37999986432222111 45
Q ss_pred HHHHHHHHhcC
Q 036860 138 FSLSMAKLIQE 148 (159)
Q Consensus 138 l~~~i~~l~~~ 148 (159)
+.+.|.+++..
T Consensus 248 ~l~~l~~~lg~ 258 (406)
T cd01967 248 SLRKIAKFFGD 258 (406)
T ss_pred HHHHHHHHhCC
Confidence 55555555443
No 204
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=69.56 E-value=10 Score=27.92 Aligned_cols=64 Identities=23% Similarity=0.156 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 56 ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
+.....+.+++++++.|.+.-+..+|.++.+.+..+ ..|++++.+..+ +++.++-.+-+|||++
T Consensus 226 ~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPvlTP 289 (308)
T TIGR03682 226 RRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPVLTP 289 (308)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCcccCH
Confidence 344667888889999888776777899999888666 599999866532 2344445555565553
No 205
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=68.43 E-value=4.5 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.025 Sum_probs=13.8
Q ss_pred cHHHHhhhcCCcEEEe
Q 036860 109 IVPLEAMAAYKPVSAC 124 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~ 124 (159)
-.+.|++-+|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 3589999999999984
No 206
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=67.10 E-value=28 Score=22.47 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=54.8
Q ss_pred EEecCCccccccCCCCCcccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEeCCCCCC
Q 036860 32 VLYLAVNVYQFDKPHSCGCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----L-CVFYTPKDEH 106 (159)
Q Consensus 32 vi~~~vd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~-~~i~~s~~e~ 106 (159)
.+-||.++..+-...+.-|... .-.+....+++.+.+++. .+.|.-.=...++.+++..+ | +++.|.-+-.
T Consensus 3 lvinGPNLN~LG~Rep~iYG~~--tl~~i~~~l~~~a~~~g~--~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~TH 78 (140)
T cd00466 3 LVLNGPNLNLLGKREPEIYGTT--TLADIEALLRELAAELGV--EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTH 78 (140)
T ss_pred EEEeCCCccccCCCCCCcCCcC--CHHHHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHH
Confidence 4556766665544333322110 012345566666666665 36776555566777777766 3 5556777778
Q ss_pred CccHHHHhh-hcCCcEEEeC
Q 036860 107 FGIVPLEAM-AAYKPVSACD 125 (159)
Q Consensus 107 ~g~~~lEam-a~G~Pvi~~~ 125 (159)
++..+.+|+ +.++|+|=-.
T Consensus 79 tSvAi~DAl~~~~~P~VEVH 98 (140)
T cd00466 79 TSIALRDALAAVSIPVIEVH 98 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEe
Confidence 899999996 5688888643
No 207
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=66.37 E-value=44 Score=23.71 Aligned_cols=55 Identities=4% Similarity=-0.161 Sum_probs=38.3
Q ss_pred CCCcEEEccC--CCHHHHHHHHHhCcEEEe-CCCC--CCCccHHHHhhhcCCcEEEeCCC
Q 036860 73 MSDRVNFITS--CSTTERNALLFECLCVFY-TPKD--EHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 73 ~~~~v~~~g~--~~~~~l~~~~~~a~~~i~-~s~~--e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+.++|.|.|. ++.+++.+.+.+||++|. .+.. .+...-+.+|-..|.+++.-+..
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 208 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLE 208 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCC
Confidence 4567999887 456677788999999876 3332 33333456788899998876643
No 208
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.03 E-value=11 Score=27.97 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-------------------HHHHHHHHH-H
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-------------------EEFSLSMAK-L 145 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-------------------~~l~~~i~~-l 145 (159)
+.+.+.+..+|+.+- --|...=++...|+|||....-|. .+... .+-++.+.+ +
T Consensus 303 qsfadiLH~adaalg-----mAGTAtEQavGLGkPvi~fPg~GP-Qy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~l 376 (412)
T COG4370 303 QSFADILHAADAALG-----MAGTATEQAVGLGKPVIGFPGQGP-QYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQEL 376 (412)
T ss_pred HHHHHHHHHHHHHHH-----hccchHHHhhccCCceeecCCCCC-CcChHHHHHHHHHhcceeeecCCchhhHHHHHHHH
Confidence 344555665555331 124556677889999999875442 11111 444555554 8
Q ss_pred hcCHHHHHHhhhcC
Q 036860 146 IQEPQMAKNMGENA 159 (159)
Q Consensus 146 ~~~~~~~~~~~~~a 159 (159)
+.|++....++.||
T Consensus 377 l~dp~r~~air~nG 390 (412)
T COG4370 377 LGDPQRLTAIRHNG 390 (412)
T ss_pred hcChHHHHHHHhcc
Confidence 88998887777554
No 209
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=65.09 E-value=42 Score=24.08 Aligned_cols=54 Identities=19% Similarity=0.063 Sum_probs=35.8
Q ss_pred CcEEEccC-CCHHH---HHHHHHhCcEEEe-CCCC--CCCccHHHHhhhcCCcEEEeCCCC
Q 036860 75 DRVNFITS-CSTTE---RNALLFECLCVFY-TPKD--EHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 75 ~~v~~~g~-~~~~~---l~~~~~~a~~~i~-~s~~--e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
+.|.|.|. +|..+ ..+.+..||++|. .+.. .+...-+.++...|.|++.-|...
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 57888876 56533 4577888998886 2322 333344556888999999987543
No 210
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=64.88 E-value=49 Score=23.72 Aligned_cols=79 Identities=19% Similarity=0.048 Sum_probs=50.5
Q ss_pred HHHHcCCC-Cc-EEEccCCCHHHHHHHHHhCcEEEeCCCCC----CCccHHHHhhhcCCcEEEeCCCCCce---eecc-H
Q 036860 67 LAERNGMS-DR-VNFITSCSTTERNALLFECLCVFYTPKDE----HFGIVPLEAMAAYKPVSACDSGGPVE---TIKN-E 136 (159)
Q Consensus 67 ~~~~~~~~-~~-v~~~g~~~~~~l~~~~~~a~~~i~~s~~e----~~g~~~lEama~G~Pvi~~~~~~~~e---~i~~-~ 136 (159)
.+.+.|++ .+ |-.-|..+.+.=..+++...+-++-++.. |+.-++--|+.+|+|||.-..+.... .+.+ +
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~ 245 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDIS 245 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHH
Confidence 56666664 23 44558777665568888776655555543 34457888899999999988776532 2333 6
Q ss_pred HHHHHHHHH
Q 036860 137 EFSLSMAKL 145 (159)
Q Consensus 137 ~l~~~i~~l 145 (159)
++.+.+.++
T Consensus 246 el~~~l~~~ 254 (256)
T TIGR00715 246 QLNQFVARL 254 (256)
T ss_pred HHHHHHHHh
Confidence 666666554
No 211
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=64.79 E-value=23 Score=22.88 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEecCCccccccCCCCCccccccccc---HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEeCCC
Q 036860 32 VLYLAVNVYQFDKPHSCGCDKLLREN---VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----L-CVFYTPK 103 (159)
Q Consensus 32 vi~~~vd~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~-~~i~~s~ 103 (159)
.+-||.++..+-...+..| |. .+..+.+++.+.+++.. +.|.-.=...++.+++..+ | +++.|--
T Consensus 4 lvinGPNLn~LG~Rep~iY-----G~~tl~~i~~~~~~~a~~~g~~--v~~~QSN~EGelid~I~~a~~~~dgiIINpga 76 (140)
T PF01220_consen 4 LVINGPNLNLLGKREPEIY-----GTTTLEDIEQKCKETAAELGVE--VEFFQSNHEGELIDWIHEARDDVDGIIINPGA 76 (140)
T ss_dssp EEEE-TTGGGTTTSSHHHH-----TSSHHHHHHHHHHHHHHHTTEE--EEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GG
T ss_pred EEEcCCCcccccCCCCCcC-----CcCCHHHHHHHHHHHHHHCCCe--EEEEecCCHHHHHHHHHHHHhhCCEEEEccch
Confidence 4556766665544332211 22 23456667777776653 6666555566777777655 4 4556777
Q ss_pred CCCCccHHHHhh-hcCCcEEEe
Q 036860 104 DEHFGIVPLEAM-AAYKPVSAC 124 (159)
Q Consensus 104 ~e~~g~~~lEam-a~G~Pvi~~ 124 (159)
+..++.++.+|+ +.++|+|=-
T Consensus 77 ~thtS~Ai~DAl~~~~~P~vEV 98 (140)
T PF01220_consen 77 YTHTSIAIRDALKAISIPVVEV 98 (140)
T ss_dssp GGHT-HHHHHHHHCCTS-EEEE
T ss_pred hccccHHHHHHHHcCCCCEEEE
Confidence 778889999996 567888864
No 212
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.87 E-value=28 Score=24.57 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccH
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIV 110 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~ 110 (159)
+....+.+.+++.|+..-+.+.+.-+.+++..++..++-++.-+...++|..
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~ 167 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVP 167 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCC
Confidence 4566788889999997656666667788889999999977644666666644
No 213
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=63.58 E-value=8.8 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHhCcEEEeCCCC----CCCccHHHHhhhcCCcEEEeCCC
Q 036860 90 ALLFECLCVFYTPKD----EHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 90 ~~~~~a~~~i~~s~~----e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+.+.+||++|..... .|.+.=+-=|.+.|+||++....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 788999999864332 22222345568999999996543
No 214
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=62.83 E-value=31 Score=24.05 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCcc
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGI 109 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~ 109 (159)
..++.+.+++.|..-.+-+-+..|.+.+..++...|.+++-+..-|||.
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 4566778888888777888888999999999999998888777777765
No 215
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=62.73 E-value=48 Score=24.65 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=55.7
Q ss_pred ccccHHHHHHHHHHHH-HcCCCCcEEEccCCC-----------HHHHHHHHHhCcEEEe--CCCCCC---CccHHHHhhh
Q 036860 54 LRENVEYLEELKSLAE-RNGMSDRVNFITSCS-----------TTERNALLFECLCVFY--TPKDEH---FGIVPLEAMA 116 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~-~~~~~~~v~~~g~~~-----------~~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEama 116 (159)
+.|-|..-..+.+.++ .++. +|.+..... ..++.+++..||++++ |...+. ++-..++.|-
T Consensus 150 IiG~G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk 227 (323)
T PRK15409 150 IVGMGRIGMALAQRAHFGFNM--PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMK 227 (323)
T ss_pred EEcccHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCC
Confidence 5577777777777776 6665 355543221 1246789999998885 444444 4456888888
Q ss_pred cCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 117 AYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 117 ~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
-|.-+|-+..|++ +.+++|.+++.
T Consensus 228 ~ga~lIN~aRG~v---Vde~AL~~AL~ 251 (323)
T PRK15409 228 SSAIFINAGRGPV---VDENALIAALQ 251 (323)
T ss_pred CCeEEEECCCccc---cCHHHHHHHHH
Confidence 8887777777664 44466666654
No 216
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=61.87 E-value=37 Score=21.23 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=40.0
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCC
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~ 129 (159)
.|.+....+.+++.+.+..+|+++..+.. .+.-.+++.+ -++-.|++...|.
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~ 71 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGV 71 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSC
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEccccc
Confidence 58888888999999999999999974443 4667778877 6777777766665
No 217
>PRK14986 glycogen phosphorylase; Provisional
Probab=61.78 E-value=20 Score=30.24 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=52.0
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
+|.|+....-.--..++..||+-...|. .|..|..-.-+|.-|.+.+++--|...|+.+
T Consensus 623 kVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e 683 (815)
T PRK14986 623 KVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLE 683 (815)
T ss_pred eEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHH
Confidence 6999988877777799999999998776 5999999999999999999999888777776
No 218
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=61.61 E-value=34 Score=23.97 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFG 108 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g 108 (159)
..+..+.+++.|..-.+.+-+..|-+.+..++...|.+++-+..-|||
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 456667888888887888889899999999999999888777766765
No 219
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=60.34 E-value=19 Score=26.91 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 56 ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
+.....+.+++++++.|.+.-+..+|.++.+.+..+ ...|++++.+.+ -+++-++-.+-+|+|++
T Consensus 246 ~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~~aCP---r~sidd~~~f~kPvlTP 310 (332)
T TIGR00322 246 GRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQVACP---RIAIDDGYLFNKPLLTP 310 (332)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEEecCC---CceecchhhcCCccccH
Confidence 344667888899999888777778899998877444 579999986653 23444555555665553
No 220
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=60.08 E-value=59 Score=25.95 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccH
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNE 136 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~ 136 (159)
....+++++.+.+|+.-++.+.+..+-+++.. +.+|++-+..+. -+|..+.++| .+|+|.+....-|+... .
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~--~~g~~~A~~Lee~fGiP~i~~~PiG~~~T---~ 248 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYR--EIGESAARYLEREFGQPYVKTVPIGVGAT---A 248 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCH--HHHHHHHHHHHHHhCCcccccccccHHHH---H
Confidence 45677888899999887777777777777654 566666665433 2566777775 47999886422221111 5
Q ss_pred HHHHHHHHHhc
Q 036860 137 EFSLSMAKLIQ 147 (159)
Q Consensus 137 ~l~~~i~~l~~ 147 (159)
.|...|.+++.
T Consensus 249 ~fL~~la~~~g 259 (519)
T PRK02910 249 RFIREVAELLN 259 (519)
T ss_pred HHHHHHHHHhC
Confidence 55555555554
No 221
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=59.95 E-value=46 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=20.7
Q ss_pred ccHHHHhhhcC--CcEEEeCCCCCceeecc
Q 036860 108 GIVPLEAMAAY--KPVSACDSGGPVETIKN 135 (159)
Q Consensus 108 g~~~lEama~G--~Pvi~~~~~~~~e~i~~ 135 (159)
..++.|+-..+ .++|.+|-.|..++++.
T Consensus 70 ~~~~~~~~~~~~~~~~IGsDEvG~GDyFGp 99 (297)
T COG1039 70 AQTVLEANVNQDAKNLIGSDEVGKGDYFGP 99 (297)
T ss_pred hhhhhhhhhhhccccccCCCCCCCCCccCC
Confidence 34455555444 89999999888998887
No 222
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=59.80 E-value=15 Score=27.21 Aligned_cols=68 Identities=26% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc-cCCCHH--HHHHHHHhCcEEEeCCCC---CCCccHHHHhhhcCCcEEEeCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI-TSCSTT--ERNALLFECLCVFYTPKD---EHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~--~l~~~~~~a~~~i~~s~~---e~~g~~~lEama~G~Pvi~~~~ 126 (159)
....+++++.++..|+. -+... ....+. -+..+..+.|++..|..+ .++...+.+|...++|+++++.
T Consensus 174 ~~l~eelk~~A~~~Gl~-vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~ 247 (322)
T COG2984 174 VSLVEELKKEARKAGLE-VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDT 247 (322)
T ss_pred HHHHHHHHHHHHHCCCE-EEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCH
Confidence 45678888899988874 22222 222221 234566888999988764 4566678999999999999984
No 223
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=59.72 E-value=21 Score=27.10 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=39.2
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
.++++++++.++..+++-.||+.++--. =+.+-|.-+|+|.|=.-.+-
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-----DSfVRAqwAgkPFvWhIYpQ 292 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFVRGE-----DSFVRAQWAGKPFVWHIYPQ 292 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceEecc-----hHHHHHHHhCCCceEecCcC
Confidence 5888899999999999999999987222 36788999999988765444
No 224
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=59.06 E-value=26 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred ccCCCHHHHHHHHH-----hCcEEEeCCCC-CCCcc-HHHHhhhcCCcEEEeCCC
Q 036860 80 ITSCSTTERNALLF-----ECLCVFYTPKD-EHFGI-VPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 80 ~g~~~~~~l~~~~~-----~a~~~i~~s~~-e~~g~-~~lEama~G~Pvi~~~~~ 127 (159)
++.++.+.+.+... .+|+++++..+ -.... .-+|.. .|+|||+++..
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqa 215 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQA 215 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHH
Confidence 34566666666555 35555553321 12221 134443 79999998843
No 225
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.82 E-value=42 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFG 108 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g 108 (159)
...+.+.+++.|..-.+-+-+..+-+.+..++...|.+++-|..-|||
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~ 144 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFA 144 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCc
Confidence 445667888888887888889899999999999999888777776776
No 226
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=58.19 E-value=27 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=34.9
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCC------CCCCccHHHHhhhcCC-cEEEeCCCC
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPK------DEHFGIVPLEAMAAYK-PVSACDSGG 128 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~------~e~~g~~~lEama~G~-Pvi~~~~~~ 128 (159)
+..+|..-.+|..+.++.+......+. .+.+-.+-+|..|||+ ||.-.+.|.
T Consensus 256 ~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GE 314 (355)
T PF11440_consen 256 VPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGE 314 (355)
T ss_dssp EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHH
T ss_pred ceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccc
Confidence 788888888899999999988876554 2446678899999999 665555443
No 227
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=57.66 E-value=56 Score=24.99 Aligned_cols=88 Identities=8% Similarity=-0.030 Sum_probs=55.8
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccC--------CCHHHHHHHHHhCcEEE--eCCCCC----CCc---cHHH
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITS--------CSTTERNALLFECLCVF--YTPKDE----HFG---IVPL 112 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~--------~~~~~l~~~~~~a~~~i--~~s~~e----~~g---~~~l 112 (159)
....+.|-|..-..+.+.++.+|.+ |..... .....+.+++..||+++ .|...+ ..+ -..+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~--V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIK--TLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCE--EEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 3344678888888898898888863 444321 11235789999999998 455443 433 3567
Q ss_pred HhhhcCCcEEEeCCCCCceeeccHHHHHHH
Q 036860 113 EAMAAYKPVSACDSGGPVETIKNEEFSLSM 142 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~~~e~i~~~~l~~~i 142 (159)
..|.-|.-+|-+..|++ +.+++|.+++
T Consensus 195 ~~mk~gailIN~aRG~v---VDe~AL~~aL 221 (378)
T PRK15438 195 RSLKPGAILINACRGAV---VDNTALLTCL 221 (378)
T ss_pred hcCCCCcEEEECCCchh---cCHHHHHHHH
Confidence 77777777777666553 3334444444
No 228
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=57.57 E-value=45 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccH--HHHhhh------cCCcEEEeCCCCCce
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIV--PLEAMA------AYKPVSACDSGGPVE 131 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~--~lEama------~G~Pvi~~~~~~~~e 131 (159)
+....+...||++|. ..-|+|.- ++|+++ ..+|++..+..+..+
T Consensus 88 ~Rk~~m~~~sda~I~--lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~ 139 (178)
T TIGR00730 88 ERKAMMAELADAFIA--MPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFD 139 (178)
T ss_pred HHHHHHHHhCCEEEE--cCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHH
Confidence 344688889999996 33567764 788875 489999998655443
No 229
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=55.92 E-value=30 Score=27.45 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 56 ENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
+.....+.+++++++.|...-+..+|.++.+.|..+ ...|++|+.+.++ +++.++-.+-+|||++
T Consensus 295 ~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr---~sidd~~~F~KPVlTP 359 (496)
T TIGR00272 295 NTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQ---SGIIDSNEFYRPIVTP 359 (496)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCC---cccccHhhCCCceecH
Confidence 445667889999999988777888899998877544 4799999866532 2333555555666654
No 230
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=55.63 E-value=55 Score=25.23 Aligned_cols=86 Identities=17% Similarity=0.089 Sum_probs=55.8
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCCC---------HHHHHHHHHhCcEEEe--CCCCCCCc---cHHHHhhhcC
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSCS---------TTERNALLFECLCVFY--TPKDEHFG---IVPLEAMAAY 118 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~---------~~~l~~~~~~a~~~i~--~s~~e~~g---~~~lEama~G 118 (159)
.+.|-|..-..+.+.++.+|. +|..+..-+ ..++.++++.||++.+ |...+..+ -..+..|--|
T Consensus 155 GIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~g 232 (409)
T PRK11790 155 GIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPG 232 (409)
T ss_pred EEECCCHHHHHHHHHHHHCCC--EEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCC
Confidence 356778888888888888876 354443211 1267899999998886 44444444 4477788778
Q ss_pred CcEEEeCCCCCceeeccHHHHHHHH
Q 036860 119 KPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
.-+|-+..|++ +..++|.+++.
T Consensus 233 a~lIN~aRG~~---vde~aL~~aL~ 254 (409)
T PRK11790 233 AILINASRGTV---VDIDALADALK 254 (409)
T ss_pred eEEEECCCCcc---cCHHHHHHHHH
Confidence 77777776664 33355555553
No 231
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=55.48 E-value=42 Score=21.69 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCC--HHHHHHHHHhCcEEEeCCC--------CC--CCccHHHHhhhcCCcEEEeC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCS--TTERNALLFECLCVFYTPK--------DE--HFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~--~~~l~~~~~~a~~~i~~s~--------~e--~~g~~~lEama~G~Pvi~~~ 125 (159)
|.+.+.+...+++.. +..+...+ .+++.+.+..||++++.-- .. +.-..+-|+...|.|++.+.
T Consensus 1 y~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~S 76 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTS 76 (154)
T ss_dssp HHHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEET
T ss_pred CHHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEC
Confidence 456677777888864 66665544 6678899999999887421 11 22235677788999999887
No 232
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=55.41 E-value=67 Score=22.22 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCC-HHH---HHHHHH-hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCS-TTE---RNALLF-ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~-~~~---l~~~~~-~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
....+++.+++.+..-.+.....-+ ..+ +..+.+ .+|.+++.+...... .+.+....|+|+|+.+..
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~~~~~~~ipvv~~~~~ 88 (264)
T cd01574 17 TLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD-AALAAAPADVPVVFVDGS 88 (264)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH-HHHHHHhcCCCEEEEecc
Confidence 4566777788777643333333322 211 222333 578777533322222 456677889999998754
No 233
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=54.12 E-value=44 Score=24.52 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=25.9
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~ 48 (159)
|+++.....+..++..+....- ..++++|.|+..|.+.+..
T Consensus 35 Vvtt~~~~~d~~~~I~gd~~~V---~~iv~~g~dpH~yepsp~d 75 (303)
T COG0803 35 VVTTFPPIADVVKNIAGDKVDV---VSLVPPGADPHSYEPTPSD 75 (303)
T ss_pred EEEecHHHHHHHHHhcCCceeE---EEecCCCCCCcCCCCCHHH
Confidence 5555555565655554432211 3478889999999998765
No 234
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=53.98 E-value=26 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=51.3
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
+|.|+....-.--..++..||+-...|. .|..|..-.-+|.-|.+.+++--|...|+.+
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e 669 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAE 669 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHH
Confidence 6889988877767799999999998776 5999999999999999999998888777775
No 235
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=53.35 E-value=54 Score=23.13 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCC--CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCcc
Q 036860 61 LEELKSLAERNGM--SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGI 109 (159)
Q Consensus 61 ~~~~~~~~~~~~~--~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~ 109 (159)
..+..+.+++.|. .-.+.+-+.-|-+.+..++...|.++.-|..-|||.
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgG 155 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGT 155 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCC
Confidence 4456677888876 667888888899999999999998887777767663
No 236
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=52.99 E-value=73 Score=21.93 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCCcEEEccC-CCHH---HHHHHHHhCcEEEe-CCCC--CCCccHHHHhhhcCCcEEEeCCC
Q 036860 73 MSDRVNFITS-CSTT---ERNALLFECLCVFY-TPKD--EHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 73 ~~~~v~~~g~-~~~~---~l~~~~~~a~~~i~-~s~~--e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+.++|.|.|. +|.. +..+.+.+||++|. -+.. .+...-+-++...|.|++.-+..
T Consensus 130 lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 130 LKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred cCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 3467888887 4654 45577788998886 3332 23333345677889999886643
No 237
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=52.66 E-value=30 Score=27.48 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccH
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNE 136 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~ 136 (159)
....+++++.+.+|++-++.|.+.-+-+++.. +.+|++-|.++.. .|....++| .+|+|.+....-|+.+. .
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~~--~g~~~A~~Le~~fGiP~i~~~PiG~~~T---~ 248 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYRE--IGLMAAEYLKEKFGQPYITTTPIGVNAT---R 248 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEechH--HHHHHHHHHHHHhCCCcccccccCHHHH---H
Confidence 34578888889999887777777777677655 4777777765442 556667776 68999885422221111 5
Q ss_pred HHHHHHHHHh
Q 036860 137 EFSLSMAKLI 146 (159)
Q Consensus 137 ~l~~~i~~l~ 146 (159)
.|...|.+++
T Consensus 249 ~fL~~l~~~~ 258 (511)
T TIGR01278 249 RFIREIAALL 258 (511)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 238
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=52.50 E-value=54 Score=24.23 Aligned_cols=90 Identities=9% Similarity=0.031 Sum_probs=56.9
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccC-----------CCHHHHHHHHHhCcEEEe--CCCCCCC---ccHHH
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITS-----------CSTTERNALLFECLCVFY--TPKDEHF---GIVPL 112 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~l~~~~~~a~~~i~--~s~~e~~---g~~~l 112 (159)
+....+.|-|..-..+.+.+..++.. |..+.. .+..++.+++..||++++ |...+.. +-..+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~--V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l 213 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFP--LRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL 213 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE--EEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence 33444668888888888888877752 443321 123467899999998886 3333333 33578
Q ss_pred HhhhcCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 113 EAMAAYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
+.|--|.-+|-...|++ +.+++|.+++.
T Consensus 214 ~~mk~ga~lIN~aRG~v---Vde~aL~~aL~ 241 (312)
T PRK15469 214 EQLPDGAYLLNLARGVH---VVEDDLLAALD 241 (312)
T ss_pred hcCCCCcEEEECCCccc---cCHHHHHHHHh
Confidence 88888876666666553 44466666654
No 239
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=52.38 E-value=61 Score=21.29 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=29.8
Q ss_pred HHHHHHHhCcEEEeCCCCCCCcc--HHHHhhhcCCcEEEeCCCC
Q 036860 87 ERNALLFECLCVFYTPKDEHFGI--VPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 87 ~l~~~~~~a~~~i~~s~~e~~g~--~~lEama~G~Pvi~~~~~~ 128 (159)
...-+...||++|... .++|. -+.|++..++|++.-+..+
T Consensus 84 Rk~~m~~~sda~Ivlp--GG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 84 RNFILVRSADVVVSVG--GGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHHHCCEEEEcC--CchhHHHHHHHHHHcCCCEEEEECCC
Confidence 4467888899988643 35664 4799999999998876544
No 240
>PRK13243 glyoxylate reductase; Reviewed
Probab=52.31 E-value=72 Score=23.80 Aligned_cols=74 Identities=16% Similarity=0.062 Sum_probs=45.4
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCCCH-----------HHHHHHHHhCcEEEe--CCCCCC---CccHHHHhhh
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSCST-----------TERNALLFECLCVFY--TPKDEH---FGIVPLEAMA 116 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-----------~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEama 116 (159)
.+.|-|..-..+.+.+..++. +|..+..-+. .++.+++..||++++ |...+. ++-..+++|-
T Consensus 154 gIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk 231 (333)
T PRK13243 154 GIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMK 231 (333)
T ss_pred EEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCC
Confidence 355777777888888887775 3555442211 246788999998886 333333 3334666666
Q ss_pred cCCcEEEeCCCC
Q 036860 117 AYKPVSACDSGG 128 (159)
Q Consensus 117 ~G~Pvi~~~~~~ 128 (159)
-|.-+|-+..|+
T Consensus 232 ~ga~lIN~aRg~ 243 (333)
T PRK13243 232 PTAILVNTARGK 243 (333)
T ss_pred CCeEEEECcCch
Confidence 666555555444
No 241
>PRK08005 epimerase; Validated
Probab=52.21 E-value=63 Score=22.44 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFG 108 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g 108 (159)
..++.+.+++.|..-.+-+-+.-|-+.+..++...|.++.-|..-|||
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~ 142 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGR 142 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCc
Confidence 456667788888877788888888899999999999888777777765
No 242
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.06 E-value=75 Score=21.77 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=29.3
Q ss_pred HHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 91 LLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 91 ~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
.+..+|+++..+..+.....+.+....+++|-..+.+...+++-.
T Consensus 67 ~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~P 111 (202)
T PRK06718 67 DIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNVVFP 111 (202)
T ss_pred hcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEEEe
Confidence 456677777766555555555555567888888776666666554
No 243
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=51.67 E-value=13 Score=13.77 Aligned_cols=10 Identities=30% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHhhhcCC
Q 036860 110 VPLEAMAAYK 119 (159)
Q Consensus 110 ~~lEama~G~ 119 (159)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 4677777764
No 244
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=51.19 E-value=84 Score=22.11 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHcCCCCcEEE---ccCCCHHHHHHHHHh-------CcEEEeCCCCCCCccH-HHHhhhcCCcEEEeC
Q 036860 57 NVEYLEELKSLAERNGMSDRVNF---ITSCSTTERNALLFE-------CLCVFYTPKDEHFGIV-PLEAMAAYKPVSACD 125 (159)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~v~~---~g~~~~~~l~~~~~~-------a~~~i~~s~~e~~g~~-~lEama~G~Pvi~~~ 125 (159)
+.++..++.+.+.+.+. +.|.+ .|....+++.++++. ..+.+.....-|++.. .++|+..|+-.|-+.
T Consensus 144 ~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s 222 (265)
T cd03174 144 DPEYVLEVAKALEEAGA-DEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGS 222 (265)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEec
Confidence 34455666666677664 34555 377777766555544 3344444444455543 699999999999999
Q ss_pred CCCCceeecc---HHHHHHHHHH
Q 036860 126 SGGPVETIKN---EEFSLSMAKL 145 (159)
Q Consensus 126 ~~~~~e~i~~---~~l~~~i~~l 145 (159)
.+|+.+-.++ ++++..+...
T Consensus 223 ~~G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 223 VNGLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred cccccccccCccHHHHHHHHHhc
Confidence 9999988888 7777777665
No 245
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=51.17 E-value=14 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHH--hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc
Q 036860 89 NALLF--ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV 130 (159)
Q Consensus 89 ~~~~~--~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~ 130 (159)
.+++. ..|++|=.+..+...--+.+++..|+.||+.+.+.+.
T Consensus 52 ~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 52 EELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred HHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 45555 7899997655555555678899999999999987765
No 246
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=50.53 E-value=61 Score=22.74 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHH-HhCcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALL-FECLCVFYTPK 103 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~-~~a~~~i~~s~ 103 (159)
..+++++..+.+ +-.|..=|.+..+....+. ..+|+++..|.
T Consensus 157 i~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 157 IRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 344444554422 3346666999999888887 78999998774
No 247
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=37 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=19.7
Q ss_pred ccHHHHhhhcCCcEEEe-CCCCCceeec
Q 036860 108 GIVPLEAMAAYKPVSAC-DSGGPVETIK 134 (159)
Q Consensus 108 g~~~lEama~G~Pvi~~-~~~~~~e~i~ 134 (159)
-.++.||--+|+|||+- |.-.-++.+.
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 47899999999999994 4444444444
No 248
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.14 E-value=1.3e+02 Score=23.58 Aligned_cols=80 Identities=15% Similarity=-0.005 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHHH
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEFS 139 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l~ 139 (159)
.+++++.+++|+.-+..|.+.-+-+++. -+.+|.+.+..+. ..+..+.+.| .+|+|.+....-|..+. +.+.
T Consensus 213 ~el~~lL~~~Gl~v~~~~~~~~s~eei~-~~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~~~G~~~T---~~~L 286 (456)
T TIGR01283 213 WHVKPLLEKLGIRVLATITGDSRYAEVQ-TAHRAKLNMVQCS--KSMINLARKMEEKYGIPYFEGSFYGIEDT---SKAL 286 (456)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcHHHHH-hcccCcEEEEECH--hHHHHHHHHHHHHcCCCEEecCCCcHHHH---HHHH
Confidence 4777777788877666677766666654 3444455443221 1235567777 67999987432221111 5555
Q ss_pred HHHHHHhc
Q 036860 140 LSMAKLIQ 147 (159)
Q Consensus 140 ~~i~~l~~ 147 (159)
+.|.+++.
T Consensus 287 ~~Ia~~lg 294 (456)
T TIGR01283 287 RDIADLFG 294 (456)
T ss_pred HHHHHHhC
Confidence 55555554
No 249
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.53 E-value=91 Score=21.76 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHh-CcEEEeCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFE-CLCVFYTP 102 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~-a~~~i~~s 102 (159)
..+++++..+.+..-.|..-|.++.+.+..+... +|.++.-|
T Consensus 154 I~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 154 LRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred HHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 4455555555444334777899998888877764 88888754
No 250
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.52 E-value=18 Score=25.78 Aligned_cols=41 Identities=17% Similarity=0.030 Sum_probs=26.2
Q ss_pred HHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 87 ERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 87 ~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
++.+++..+|+++..+..+...-.+..++..|+|++....+
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44555667787776565555545567777778888765433
No 251
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=48.50 E-value=1.3e+02 Score=24.09 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHH
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEE 137 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~ 137 (159)
...+++++.+.+|+.-|..|.+.-+-+++.+ +.+|++-|..+. .+|..+.|+| -+|+|.+....-|+.+. +.
T Consensus 181 Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~-~~~A~~NIvl~~--~~g~~~A~~Le~~fgiP~i~~~PiGi~~T---~~ 254 (513)
T CHL00076 181 DCRELKRLLQDLGIEINQIIPEGGSVEDLKN-LPKAWFNIVPYR--EVGLMTAKYLEKEFGMPYISTTPMGIVDT---AE 254 (513)
T ss_pred hHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEech--hhhHHHHHHHHHHhCCCeEeeccCCHHHH---HH
Confidence 4678999999999987888888777777755 677777776544 3667778877 46999987422221111 55
Q ss_pred HHHHHHHHhc
Q 036860 138 FSLSMAKLIQ 147 (159)
Q Consensus 138 l~~~i~~l~~ 147 (159)
|...|.+++.
T Consensus 255 fLr~la~~lg 264 (513)
T CHL00076 255 CIRQIQKILN 264 (513)
T ss_pred HHHHHHHHhC
Confidence 5555555554
No 252
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.45 E-value=59 Score=19.57 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH--hhhcCCcEEEeCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE--AMAAYKPVSACDS 126 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE--ama~G~Pvi~~~~ 126 (159)
..+.+++.+++.|++ +.+. ..+..++......+|+++...... |-..-++ +-..|+||..-+.
T Consensus 16 la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~-~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 16 LANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMA-SYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHH-HHHHHHHHHhhhcCCCEEEeCH
Confidence 457788889988875 4433 445677889999999998755421 1122222 2345788887663
No 253
>PRK08223 hypothetical protein; Validated
Probab=47.92 E-value=97 Score=22.75 Aligned_cols=66 Identities=11% Similarity=-0.042 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCcc---HHHHhhhcCCcEEEeCCCCC
Q 036860 64 LKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGI---VPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 64 ~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~---~~lEama~G~Pvi~~~~~~~ 129 (159)
..+.+.+.+-.-+|.-+ ..++.+...+++..+|+++-.+-+-.+.. .---+...|+|.|.....+.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 34555555543345433 56777777899999999986443211121 12345788999999864443
No 254
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.66 E-value=92 Score=21.53 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHH-----HhCcEEE-eCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALL-----FECLCVF-YTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~-----~~a~~~i-~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+..-+++.+++++..-.+.+...-+.++..+.+ +..|.++ .|...+...-.+-++...|+||+..+..
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 455667788888775333223333433333333 3456555 4555566666777888899999998777
No 255
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=47.58 E-value=17 Score=30.52 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=51.6
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCC--CCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPK--DEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~--~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
+|.|+....-.--..++..||+-...|. .|..|..-.-+|.-|.+.++|--|...|+.++
T Consensus 610 kVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~ 671 (797)
T cd04300 610 KVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEE 671 (797)
T ss_pred EEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHH
Confidence 6889988877766799999999998776 59999999999999999999988887777754
No 256
>PRK14852 hypothetical protein; Provisional
Probab=47.38 E-value=1.7e+02 Score=25.71 Aligned_cols=68 Identities=10% Similarity=-0.095 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCC---ccHHHHhhhcCCcEEEeCCCCCc
Q 036860 63 ELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHF---GIVPLEAMAAYKPVSACDSGGPV 130 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~---g~~~lEama~G~Pvi~~~~~~~~ 130 (159)
...+.+.+.+-.-+|... ..+..+.+.+++..+|++|-..-+-.. -...-.+...|+|+|.....|..
T Consensus 390 vaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 390 VMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred HHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 345556666544456655 677788889999999999964432111 12233467889999998764433
No 257
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=47.36 E-value=26 Score=20.98 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=29.2
Q ss_pred CcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 75 DRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 75 ~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
+.+.++ |.-++-.+..+.....+++++...+.-...+--|-..|+|++.++..
T Consensus 41 ~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-
T ss_pred CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCC
Confidence 446666 66655555566666667777655555555566667778888888754
No 258
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=45.75 E-value=17 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCCC-------------cEEEccCCCHHHHHHHHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEe
Q 036860 59 EYLEELKSLAERNGMSD-------------RVNFITSCSTTERNALLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-------------~v~~~g~~~~~~l~~~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~ 124 (159)
-|+++++++...+|+++ .|+.+|.+..+. .++++.||..+.--. ..++-..+-+|++.=+||=+.
T Consensus 169 LfKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ek-l~ilR~Ad~I~~eEl~~agly~~~wQaFavll~vksv 247 (315)
T COG0519 169 LFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREK-LEILREADAIVEEELRKAGLYDKIWQAFAVLLPVKSV 247 (315)
T ss_pred HhHHHHHHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHH-HHHHHHHhHHHHHHHHhcCcchhhhHHHhhcccccee
Confidence 46788888889989874 488889998754 589999997765322 366777888998888887666
Q ss_pred CC
Q 036860 125 DS 126 (159)
Q Consensus 125 ~~ 126 (159)
.+
T Consensus 248 GV 249 (315)
T COG0519 248 GV 249 (315)
T ss_pred ee
Confidence 54
No 259
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=45.54 E-value=1.3e+02 Score=23.15 Aligned_cols=77 Identities=12% Similarity=-0.035 Sum_probs=49.0
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCCcEEEccC--------CCHHHHHHHHHhCcEEEe--CCCCC----CCc---cHHH
Q 036860 50 CDKLLRENVEYLEELKSLAERNGMSDRVNFITS--------CSTTERNALLFECLCVFY--TPKDE----HFG---IVPL 112 (159)
Q Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~--------~~~~~l~~~~~~a~~~i~--~s~~e----~~g---~~~l 112 (159)
-...+.|-|..-..+.+.+..+|.. |..... .....+.+++..||++++ |...+ ..+ -..+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~--V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l 194 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWK--VLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFL 194 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE--EEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHH
Confidence 3344678888888888888888763 444432 122357789999998875 44332 333 3467
Q ss_pred HhhhcCCcEEEeCCCC
Q 036860 113 EAMAAYKPVSACDSGG 128 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~ 128 (159)
..|.-|.-+|-+..|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (381)
T PRK00257 195 ASLRPGAWLINASRGA 210 (381)
T ss_pred hcCCCCeEEEECCCCc
Confidence 7777776666666554
No 260
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=45.04 E-value=43 Score=26.37 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-HH
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-EE 137 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-~~ 137 (159)
....+++++.+.+|++-+..+.+.-+-+++.. +.+|.+-+.++.. .+..+-| .+|+|.+.++.| +.+ +.
T Consensus 169 ~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~-l~~A~~nIv~~~~--~a~~L~e--~~GvP~l~~PiG-----l~~Td~ 238 (468)
T TIGR02014 169 SDLAEIRRLVEGIGAEVAHVYPLGSHLAEITK-LKNADANIVMYRE--FGRGLAE--KLGKPYLQAPIG-----IESTTA 238 (468)
T ss_pred hHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHh-hccCcEEEeecHH--HHHHHHH--HHCCCccccCCC-----HHHHHH
Confidence 34578889999999887777777777777654 6777777766442 3433333 479999764321 112 77
Q ss_pred HHHHHHHHhc
Q 036860 138 FSLSMAKLIQ 147 (159)
Q Consensus 138 l~~~i~~l~~ 147 (159)
|...|.+++.
T Consensus 239 fLr~L~~~~g 248 (468)
T TIGR02014 239 FLRKLGRLLG 248 (468)
T ss_pred HHHHHHHHhC
Confidence 7777777765
No 261
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=44.59 E-value=65 Score=24.35 Aligned_cols=64 Identities=17% Similarity=0.036 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
....+.+.+...+.+.+.....++.++.+++ .-+...|+++..+... +++=+.-..++|++++.
T Consensus 253 ~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L-~~f~~iD~~v~taCPR---i~iDd~~~f~kPlLTP~ 316 (347)
T COG1736 253 LEVARELVKLLKEAGKEVYLIVVDEISPDKL-ANFDDIDAFVNTACPR---IPIDDGDRFKKPLLTPY 316 (347)
T ss_pred HHHHHHHHHHHHHcCCceEEEEecCCCHHHH-hcccceeEEEEecCCC---cccchHhhhCCcccChH
Confidence 3456777788888777655666688887765 4455788888865533 45666677788887754
No 262
>PRK06436 glycerate dehydrogenase; Provisional
Probab=44.27 E-value=1.3e+02 Score=22.21 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=53.0
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCC-------C-HHHHHHHHHhCcEEEe--CCCCCCC---ccHHHHhh
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSC-------S-TTERNALLFECLCVFY--TPKDEHF---GIVPLEAM 115 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-------~-~~~l~~~~~~a~~~i~--~s~~e~~---g~~~lEam 115 (159)
|-...+.|-|..-..+.+.++.++. +|.....- . ..++.+++..||++++ |...+.. +-..++.|
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~m 199 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGM--NIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLF 199 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcC
Confidence 3344466788887788788877775 24433211 0 2357899999998886 4333433 34567777
Q ss_pred hcCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 116 AAYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 116 a~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
--|.-+|-+..|+. +..++|.+++.
T Consensus 200 k~ga~lIN~sRG~~---vd~~aL~~aL~ 224 (303)
T PRK06436 200 RKGLAIINVARADV---VDKNDMLNFLR 224 (303)
T ss_pred CCCeEEEECCCccc---cCHHHHHHHHH
Confidence 77765555554443 23244444443
No 263
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=43.72 E-value=1.2e+02 Score=21.69 Aligned_cols=69 Identities=14% Similarity=-0.007 Sum_probs=44.4
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCCC---CCccHHHHhhhcCCcEEEeCCCCCce---eecc-HHHHHHHHHH
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKDE---HFGIVPLEAMAAYKPVSACDSGGPVE---TIKN-EEFSLSMAKL 145 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~e---~~g~~~lEama~G~Pvi~~~~~~~~e---~i~~-~~l~~~i~~l 145 (159)
|...|..+.+.=..+++..++-++-++.. |+.-++--|..+|+|||.-..+.... .+.+ +++.+.+.++
T Consensus 171 iam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 171 IALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHL 246 (248)
T ss_pred EEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHh
Confidence 44557777655567888776655545532 35667888899999999988765432 2223 6666665554
No 264
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=43.65 E-value=22 Score=21.49 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=29.8
Q ss_pred HHHHHH--hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC
Q 036860 88 RNALLF--ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 88 l~~~~~--~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
+.+++. ..|+++..+......-.+.+++..|++|++-..
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 356666 688888877766666778999999999998653
No 265
>PLN02306 hydroxypyruvate reductase
Probab=43.34 E-value=97 Score=23.77 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.6
Q ss_pred HHHHHHHhCcEEEe--CCCCCCCc---cHHHHhhhcCCcEEEeCCCC
Q 036860 87 ERNALLFECLCVFY--TPKDEHFG---IVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 87 ~l~~~~~~a~~~i~--~s~~e~~g---~~~lEama~G~Pvi~~~~~~ 128 (159)
++.+++..||++++ |...+..+ -..++.|--|.-+|-+..|+
T Consensus 229 ~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~ 275 (386)
T PLN02306 229 SMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGP 275 (386)
T ss_pred CHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 67899999998886 44445444 34666666666666665554
No 266
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=42.97 E-value=95 Score=23.16 Aligned_cols=86 Identities=5% Similarity=0.036 Sum_probs=52.5
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCCCH---------HHHHHHHHhCcEEEe--CCCCCC---CccHHHHhhhcC
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSCST---------TERNALLFECLCVFY--TPKDEH---FGIVPLEAMAAY 118 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~---------~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEama~G 118 (159)
.+.|-|..-..+-+.+...+. +|..+..-+. .++.+.+..||++++ |...+. ++-..+..|.-|
T Consensus 150 gIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~g 227 (330)
T PRK12480 150 AIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKG 227 (330)
T ss_pred EEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCC
Confidence 345677777777777776664 4555543221 146788999998886 333222 344567778888
Q ss_pred CcEEEeCCCCCceeeccHHHHHHHH
Q 036860 119 KPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 119 ~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
..+|.+..|++. ..++|.+++.
T Consensus 228 avlIN~aRG~~v---d~~aL~~aL~ 249 (330)
T PRK12480 228 AILVNAARGAVI---NTPDLIAAVN 249 (330)
T ss_pred cEEEEcCCcccc---CHHHHHHHHH
Confidence 877777776643 3355555553
No 267
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.91 E-value=91 Score=22.48 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=25.4
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. . +.+ .++++|.|+..|.+.+..
T Consensus 4 Vvts~~pl~~iv~~I~gd-~---v~V~~li~~g~dpH~yep~p~d 44 (276)
T cd01016 4 VVTTTGMIADAVENIGGD-H---VEVTGLMGPGVDPHLYKATAGD 44 (276)
T ss_pred EEEeChHHHHHHHHHcCC-e---EEEEEeeCCCCCcccCCCCHHH
Confidence 555555555555554432 1 223 467889999999998766
No 268
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=41.84 E-value=73 Score=23.34 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCcEEEccCCCHHHHHHHHHh--CcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 63 ELKSLAERNGMSDRVNFITSCSTTERNALLFE--CLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~--a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
..++.+++++.+ ..+ .++.++++. .|+++..+...-..-.++.|+..|++|++=.
T Consensus 42 ~a~~~a~~~~~~-----~~~---~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 42 RAEAFAEEFGIA-----KAY---TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHHHHcCCC-----ccc---CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcC
Confidence 355666666654 122 234567776 5788877766555556699999999999843
No 269
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=41.81 E-value=1e+02 Score=20.47 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=37.2
Q ss_pred cccccccccHHHHHH-HHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC
Q 036860 49 GCDKLLRENVEYLEE-LKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD 104 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~ 104 (159)
+...++.|.|++... +.+...+.+. +|.+..+.. +++.+.+..||++|..+..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~-~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKT-KNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCc-hhHHHHHhhCCEEEEcCCC
Confidence 566778898886333 5566655554 466666643 5788999999999986654
No 270
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=41.58 E-value=1.7e+02 Score=24.13 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=61.6
Q ss_pred cccccccccHHHHHHHHHHHHHc---CCCC---cEEEccCCCHHHHHHHHHhCcEEEeCC---CCCCCccHHHHhhhc-C
Q 036860 49 GCDKLLRENVEYLEELKSLAERN---GMSD---RVNFITSCSTTERNALLFECLCVFYTP---KDEHFGIVPLEAMAA-Y 118 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~---~~~~---~v~~~g~~~~~~l~~~~~~a~~~i~~s---~~e~~g~~~lEama~-G 118 (159)
|-+..+.+.|.+...-.+.++++ |+.- +-+|.-.++.+-+.++...-+.++.-. ...|||-.++|.++. |
T Consensus 501 G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~ 580 (627)
T COG1154 501 GEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHG 580 (627)
T ss_pred CCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcC
Confidence 56666677777766555555444 3332 346777888877889999999888643 357899999999754 4
Q ss_pred --CcEEEeCCCCCceeecc--------------HHHHHHHHHHhc
Q 036860 119 --KPVSACDSGGPVETIKN--------------EEFSLSMAKLIQ 147 (159)
Q Consensus 119 --~Pvi~~~~~~~~e~i~~--------------~~l~~~i~~l~~ 147 (159)
+||+.- |-..+++.+ +.+++.|..++.
T Consensus 581 ~~~~v~~l--glpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 581 ILVPVLNL--GLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred CCCceEEe--cCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 355443 222334443 666666665553
No 271
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=41.18 E-value=61 Score=22.09 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=25.4
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. .+.+ .++++|.|+..|.+.+..
T Consensus 5 Vvts~~pl~~iv~~I~gd----~~~V~~l~p~g~dpH~ye~tp~d 45 (203)
T cd01145 5 VVVTFPDLKDLVREVAGD----AVIVSALTPPGVDPHQYQLKPSD 45 (203)
T ss_pred EEEEChHHHHHHHHHcCC----cEEEEEecCCCCCcccccCCHHH
Confidence 555555666566554432 1223 467888999999987655
No 272
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=41.12 E-value=1.3e+02 Score=21.25 Aligned_cols=55 Identities=5% Similarity=-0.093 Sum_probs=34.7
Q ss_pred CCcEEEccC-CCHH---HHHHHHHhCcEEEe-CCCCCCCccH-HHHhhhcCCcEEEeCCCC
Q 036860 74 SDRVNFITS-CSTT---ERNALLFECLCVFY-TPKDEHFGIV-PLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 74 ~~~v~~~g~-~~~~---~l~~~~~~a~~~i~-~s~~e~~g~~-~lEama~G~Pvi~~~~~~ 128 (159)
..+|.+.|. +|.+ ...+.+.+||+++. -+...-+|.. +.+.+..|.|++.-+...
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCC
Confidence 457888886 4653 33466888998886 3333333332 456666789998877543
No 273
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.76 E-value=73 Score=23.51 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=33.8
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCce-eEEEecCCccccccCCCCC-----cccccccccHHHHHHHHHHHHHc
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIR-LVVLYLAVNVYQFDKPHSC-----GCDKLLRENVEYLEELKSLAERN 71 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~-~~vi~~~vd~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~ 71 (159)
|+++........++..+. .+. ..++++|.|+..|.+.+.. .-+..+.-...+...+.+.++..
T Consensus 27 VvaS~~pl~~~v~~I~gd----~~~V~~Lvp~g~dPH~yep~p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~ 95 (311)
T PRK09545 27 VVTSIKPLGFIASAIADG----VTETEVLLPDGASPHDYSLRPSDVKRLQSADLVVWVGPEMEAFLEKPVSKL 95 (311)
T ss_pred EEEEcHHHHHHHHHHcCC----CceEEeccCCCCCCcCCCCCHHHHHHHhcCCEEEEeCCChHhHHHHHHHhc
Confidence 455555555555544332 122 3577788999999998765 33333332233334455555443
No 274
>PRK08328 hypothetical protein; Provisional
Probab=40.71 E-value=1.3e+02 Score=21.13 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=40.2
Q ss_pred HHHHHcCCCCcEE-EccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH--hhhcCCcEEEeCCCCCcee
Q 036860 66 SLAERNGMSDRVN-FITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE--AMAAYKPVSACDSGGPVET 132 (159)
Q Consensus 66 ~~~~~~~~~~~v~-~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE--ama~G~Pvi~~~~~~~~e~ 132 (159)
+.+.+.+-.-+|. +.+.++.+.+.+++..+|+++...... -....+. +...|+|+|.....|..-.
T Consensus 89 ~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~-~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 89 WKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNF-ETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred HHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 3444444322333 235566667778999999999865542 2233444 6788999998775544433
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=40.64 E-value=37 Score=22.79 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHhCcEEEe----CCC--CCCCccHHHHhhhcCCcEEEeC
Q 036860 88 RNALLFECLCVFY----TPK--DEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 88 l~~~~~~a~~~i~----~s~--~e~~g~~~lEama~G~Pvi~~~ 125 (159)
+...+..||+.+. |.. ...|.-.+-|.|.+++|+|++-
T Consensus 94 l~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 94 LRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred HHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 4556666787776 221 2345666788899999999973
No 276
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.00 E-value=72 Score=21.44 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=43.0
Q ss_pred HHHHHhhhhhccCceeEEEecCCccccccCCCCCcccccccccHHHHHHHHHHHHHcCCC-CcEEEccCCCHHH
Q 036860 15 TFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSCGCDKLLRENVEYLEELKSLAERNGMS-DRVNFITSCSTTE 87 (159)
Q Consensus 15 ~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~ 87 (159)
.++..+...+.+++++.++.|.-...--....+.+.+..-....++...+.+.+++++++ +++..+|.+=..|
T Consensus 50 e~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TD 123 (175)
T COG2179 50 ELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTD 123 (175)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcchhhhh
Confidence 334444456667777888887432211111112244444445567778888888888875 5788889864443
No 277
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.71 E-value=78 Score=22.19 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred hCcEEEeC-CCCCCCccHHHHhhhcCCcEEEeCCCCC
Q 036860 94 ECLCVFYT-PKDEHFGIVPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 94 ~a~~~i~~-s~~e~~g~~~lEama~G~Pvi~~~~~~~ 129 (159)
.+|.++.. ....+++..-.==-..|+|||+|+....
T Consensus 179 ~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT~ 215 (238)
T COG3473 179 DADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQATL 215 (238)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhCCceeeccHHHH
Confidence 45554442 2234444332222479999999986443
No 278
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=39.01 E-value=94 Score=22.40 Aligned_cols=40 Identities=3% Similarity=-0.091 Sum_probs=25.2
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. .+.+ .++++|.|+..|.+.+..
T Consensus 6 Vv~s~~pl~~lv~~I~gd----~v~V~~l~~~g~dPH~y~~~p~d 46 (282)
T cd01017 6 VVTTFYPLYEFTKAIGGD----KADVKLIIPAGTEPHDFEPSPKD 46 (282)
T ss_pred EEEEehHHHHHHHHhcCC----ceEEEEecCCCCCCcCCCCCHHH
Confidence 555555666555554332 1223 467778999999997655
No 279
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=38.63 E-value=30 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=29.5
Q ss_pred HHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 88 RNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 88 l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
+.+++..+|+++..+......-...+++..|+++++...+.
T Consensus 61 ~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~ga 101 (271)
T PRK13302 61 LDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGA 101 (271)
T ss_pred HHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchh
Confidence 34566789999887665555555678888999999865443
No 280
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=38.49 E-value=1.5e+02 Score=21.33 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh-hhcCCcEEEeCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA-MAAYKPVSACDS 126 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa-ma~G~Pvi~~~~ 126 (159)
+....+++.+++.|++ .+....+..++..+..-+|++-.+|.. -....++++ -..|+||+.+..
T Consensus 76 ~gl~~l~~~~~~~Gl~---~~t~~~d~~~~~~l~~~~d~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 76 EGLKLLRRAADEHGLP---VVTEVMDPRDVEIVAEYADILQIGARN-MQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHHhCCC---EEEeeCChhhHHHHHhhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 4456688888888874 223333334444444558888888773 223345554 467999999865
No 281
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=38.29 E-value=60 Score=24.72 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=38.8
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
.++++++++.++..+++-.||+-++--. =+.+-|.-.|+|.|=.-.+-
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfVRGE-----DSFVRAqWAgkPfvWhIYPQ 290 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFVRGE-----DSFVRAQWAGKPFVWHIYPQ 290 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEeech-----hHHHHHHHcCCCceeecccC
Confidence 4888899999999999999999987322 36788899999988765444
No 282
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=38.23 E-value=86 Score=18.53 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=22.7
Q ss_pred HHHHhCcEEEeCCCCCCCccHHH---HhhhcCCcEE
Q 036860 90 ALLFECLCVFYTPKDEHFGIVPL---EAMAAYKPVS 122 (159)
Q Consensus 90 ~~~~~a~~~i~~s~~e~~g~~~l---Eama~G~Pvi 122 (159)
..+..||.+++..-++.--..-+ -|...|++|+
T Consensus 55 ~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 55 AMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 67779998887665554444444 4577888886
No 283
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=38.18 E-value=29 Score=24.90 Aligned_cols=35 Identities=9% Similarity=-0.184 Sum_probs=25.3
Q ss_pred HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 93 FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 93 ~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
..+|+++..|..+..--.+..++..|+|+|+.-.+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 45788887776666666678888888888875444
No 284
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.03 E-value=1.2e+02 Score=23.37 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACD 125 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~ 125 (159)
..+++++.+++|++-+..+.|.-+-+++.. +.+|.+.+..+. .+|..+.+.| -+|+|.+..+
T Consensus 181 ~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~-~~~A~lniv~~~--~~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 181 VDEFKRLLNELGLRVNAIIAGGCSVEELER-ASEAAANVTLCL--DLGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCCEEEEECh--hHHHHHHHHHHHHhCCCeEecC
Confidence 466777777777766666666666666544 455555554332 2456677777 5899988654
No 285
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=37.24 E-value=1.7e+02 Score=21.54 Aligned_cols=43 Identities=12% Similarity=-0.049 Sum_probs=27.4
Q ss_pred HHHHHHHHhCcEEE--eCCCCCC------Cc-cHHHHhhhcCCcEE-EeCCCC
Q 036860 86 TERNALLFECLCVF--YTPKDEH------FG-IVPLEAMAAYKPVS-ACDSGG 128 (159)
Q Consensus 86 ~~l~~~~~~a~~~i--~~s~~e~------~g-~~~lEama~G~Pvi-~~~~~~ 128 (159)
++..+++...++.+ .|+.+-. ++ -.+-+.+..|+||. +||.++
T Consensus 223 ~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~ 275 (324)
T TIGR01430 223 PELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDPA 275 (324)
T ss_pred HHHHHHHHHcCceEEECCcccccccccCCcccChHHHHHHCCCEEEECCCCCc
Confidence 44667888877666 6765422 22 24677888999875 466543
No 286
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=37.17 E-value=1.3e+02 Score=20.44 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEeCCCC
Q 036860 64 LKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSACDSGG 128 (159)
Q Consensus 64 ~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~~~~~ 128 (159)
+.+.+++.+-.-++..+ ..++.+.+.++++.+|+++...-.-..-..+-+ +...++|.|.....|
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 34444444432234333 456666788899999999876532211122223 366789988876433
No 287
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=36.88 E-value=2e+02 Score=22.35 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-HHHH
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-EEFS 139 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-~~l~ 139 (159)
..+++.+.+.+|++-++.+.|. +-+++...=+ |.+.+.-+.+. +........+|+|.+....-| +.+ ++|.
T Consensus 179 ~~eik~lL~~~Gi~~~~~~~G~-~~~ei~~a~~-A~~~i~l~~~~--~~a~~l~~~~GvP~~~~~PiG----~~~Td~fL 250 (422)
T TIGR02015 179 AMVIGGVLQPIGVESGPTVPGR-DWRELYAALD-SSAVAVLHPFY--EATARLFEAAGVKIVGSAPVG----ANGTGEWL 250 (422)
T ss_pred HHHHHHHHHHcCCCeEEecCCC-CHHHHHhhhc-CeEEEEeCccc--hHHHHHHHHcCCceeccCCCC----hHHHHHHH
Confidence 4678888888888776666554 6666554433 33333222222 233222237999975422111 122 7777
Q ss_pred HHHHHHhc-CHH
Q 036860 140 LSMAKLIQ-EPQ 150 (159)
Q Consensus 140 ~~i~~l~~-~~~ 150 (159)
..|.+++. +++
T Consensus 251 ~~la~~~G~~~~ 262 (422)
T TIGR02015 251 ERIGEALDLDPD 262 (422)
T ss_pred HHHHHHhCcCHH
Confidence 77777766 443
No 288
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.28 E-value=1.5e+02 Score=20.68 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHH--HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALL--FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~--~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
..+.+++.+++.+..-.+...+.....++.+.+ ++.|.++..+.... ...+-++...|.|||+-+.
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECC
Confidence 345566777777764223223322233444544 36787765332211 2234455678999998764
No 289
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=35.96 E-value=35 Score=24.47 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=28.2
Q ss_pred HHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCC
Q 036860 88 RNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 88 l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
+.+++..+|+++..+..+...-...+++..|+.+++...+.
T Consensus 55 ~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gA 95 (265)
T PRK13304 55 IDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGA 95 (265)
T ss_pred HHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHH
Confidence 34555789998876654444444567788899998876554
No 290
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.91 E-value=1.1e+02 Score=22.20 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=25.2
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. .+.+ .++++|.|+..|.+.+..
T Consensus 20 Vvts~~pl~~~v~~I~Gd----~v~V~~Lip~g~dPH~ye~~p~d 60 (287)
T cd01137 20 VVATFSILADIARNIAGD----RVNVTSIVPPGADPHEYEPTPSD 60 (287)
T ss_pred EEEEChHHHHHHHHHcCC----eeEEEEecCCCCCccCCCCCHHH
Confidence 555555566555554332 1223 466788999999997765
No 291
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=35.66 E-value=95 Score=19.42 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCC----------------CcEEEccCCCHHHHHHHHHhCcEEEe
Q 036860 60 YLEELKSLAERNGMS----------------DRVNFITSCSTTERNALLFECLCVFY 100 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~----------------~~v~~~g~~~~~~l~~~~~~a~~~i~ 100 (159)
..+++.++++..+.+ ..+=+.|...+....+++.+||+++.
T Consensus 27 a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~ 83 (137)
T PF00205_consen 27 AAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLA 83 (137)
T ss_dssp CHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEE
Confidence 356777888887765 12223444456777899999999986
No 292
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=35.66 E-value=1.4e+02 Score=20.32 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCCCccHHHHhhh--cCCcEEEeCC--CCCceeeccHHHHHHHHHHhcCHHHHHHh
Q 036860 104 DEHFGIVPLEAMA--AYKPVSACDS--GGPVETIKNEEFSLSMAKLIQEPQMAKNM 155 (159)
Q Consensus 104 ~e~~g~~~lEama--~G~Pvi~~~~--~~~~e~i~~~~l~~~i~~l~~~~~~~~~~ 155 (159)
+.||..+-+|++. .|+|||+--. +.. +.+..++++.+.|.+.+.++
T Consensus 80 ~aGFNivDi~~l~~~tg~PVi~V~~k~P~~------e~i~~Al~k~f~d~e~R~ri 129 (185)
T COG1628 80 FAGFNIVDIEALYKETGLPVIVVYRKKPDI------ERIESALRKHFDDAEERIRI 129 (185)
T ss_pred eccceEecHHHHHHhhCCcEEEEEecCCCH------HHHHHHHHHhCCCHHHHHHH
Confidence 5788888888876 8999998532 221 67788888888888877644
No 293
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.56 E-value=1e+02 Score=22.38 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=25.0
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. .-. + ..++++|.|+..|.+.+..
T Consensus 6 Vv~t~~pl~~lv~~I~Gd-~v~-V-~~li~~g~dpH~ye~~p~d 46 (286)
T cd01019 6 VLTSIKPLGFIAAAIMGG-VGE-V-EVLVPPGASPHDYELRPSD 46 (286)
T ss_pred EEEecccHHHHHHHHcCC-Ccc-e-EEecCCCCCccCCCCCHHH
Confidence 455555556555554432 111 1 3577788999999997655
No 294
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.30 E-value=1.3e+02 Score=21.59 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=25.0
Q ss_pred CcEEEeCCCCCCCccHHHHhhhcCCcEEEe-CCCCCceeecc
Q 036860 95 CLCVFYTPKDEHFGIVPLEAMAAYKPVSAC-DSGGPVETIKN 135 (159)
Q Consensus 95 a~~~i~~s~~e~~g~~~lEama~G~Pvi~~-~~~~~~e~i~~ 135 (159)
-|++++.... .-..++.||..+|+|+|+- |.....+.+.-
T Consensus 158 Pd~iii~d~~-~~~~ai~Ea~kl~IPiIaivDTn~dp~~Idy 198 (258)
T PRK05299 158 PDALFVVDPN-KEHIAVKEARKLGIPVVAIVDTNCDPDGVDY 198 (258)
T ss_pred CCEEEEeCCC-ccHHHHHHHHHhCCCEEEEeeCCCCCcccce
Confidence 4555543322 2337899999999999995 44444444443
No 295
>PRK15005 universal stress protein F; Provisional
Probab=35.01 E-value=1.1e+02 Score=18.92 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCC---cEEEccCCCHHHHHHHHH--hCcEEEeCCCCCCCc----cHHHHhh--hcCCcEEE
Q 036860 61 LEELKSLAERNGMSD---RVNFITSCSTTERNALLF--ECLCVFYTPKDEHFG----IVPLEAM--AAYKPVSA 123 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~---~v~~~g~~~~~~l~~~~~--~a~~~i~~s~~e~~g----~~~lEam--a~G~Pvi~ 123 (159)
.+.+.+.++..+.+. ..++...-+.+.+.++-. ++|+.++.+...++. .+..+.+ .+.|||+.
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 69 KSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEE
Confidence 345555555554432 234433346677887766 899999987643322 1233332 45567765
No 296
>PRK07574 formate dehydrogenase; Provisional
Probab=35.00 E-value=2.1e+02 Score=22.01 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=47.0
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCCC-------------HHHHHHHHHhCcEEEe--CCCCCC---CccHHHHh
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSCS-------------TTERNALLFECLCVFY--TPKDEH---FGIVPLEA 114 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-------------~~~l~~~~~~a~~~i~--~s~~e~---~g~~~lEa 114 (159)
.+.|-|..-..+.+.++.++. +|..+.... ..++.++++.||++++ |...+. ++-..+..
T Consensus 196 GIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~ 273 (385)
T PRK07574 196 GIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR 273 (385)
T ss_pred EEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhc
Confidence 355777777777777777765 355443221 1346789999998886 333333 34457777
Q ss_pred hhcCCcEEEeCCCCC
Q 036860 115 MAAYKPVSACDSGGP 129 (159)
Q Consensus 115 ma~G~Pvi~~~~~~~ 129 (159)
|.-|.-+|-+..|++
T Consensus 274 mk~ga~lIN~aRG~i 288 (385)
T PRK07574 274 MKRGSYLVNTARGKI 288 (385)
T ss_pred CCCCcEEEECCCCch
Confidence 877776666665543
No 297
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=34.91 E-value=26 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 57 NVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
.....+.+++++++.|...-+...|.++.+.|..+ ...|++|+.+..+ +++.+.--+-+|||++
T Consensus 224 ~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr---~~idd~~~f~kPvltP 287 (307)
T PF01866_consen 224 YLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPR---LSIDDSKDFYKPVLTP 287 (307)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-TH---HHHT--S--SS-EE-H
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCC---cccCchhhcCCcccCH
Confidence 34556788888888887666777799988776555 5799999876532 3455566667777654
No 298
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=34.70 E-value=68 Score=22.26 Aligned_cols=37 Identities=8% Similarity=-0.061 Sum_probs=26.2
Q ss_pred HHHhCcEEEeCCCC--------CCCc-----cHHHHhhhcCCcEEEeCCC
Q 036860 91 LLFECLCVFYTPKD--------EHFG-----IVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 91 ~~~~a~~~i~~s~~--------e~~g-----~~~lEama~G~Pvi~~~~~ 127 (159)
...+||++++|... -|.. ..+++++..|+||++...|
T Consensus 50 ~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg 99 (207)
T TIGR02536 50 EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPG 99 (207)
T ss_pred hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecc
Confidence 34578888887652 1222 4589999999999998643
No 299
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.69 E-value=1.3e+02 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=10.5
Q ss_pred EEEEcCHhhHHHHHH
Q 036860 4 VILVDSKFTANTFAD 18 (159)
Q Consensus 4 ~ii~~s~~~~~~~~~ 18 (159)
.||.+|+...+.+..
T Consensus 30 ~VIlvsDn~aD~~lA 44 (337)
T COG2247 30 VVILVSDNEADLLLA 44 (337)
T ss_pred EEEEecchHHHHHHh
Confidence 577788877776643
No 300
>PRK14851 hypothetical protein; Provisional
Probab=34.55 E-value=2.8e+02 Score=23.28 Aligned_cols=64 Identities=16% Similarity=-0.021 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCcEEE-ccCCCHHHHHHHHHhCcEEEeCCCCCCCcc--HHH-HhhhcCCcEEEeCC
Q 036860 63 ELKSLAERNGMSDRVNF-ITSCSTTERNALLFECLCVFYTPKDEHFGI--VPL-EAMAAYKPVSACDS 126 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~-~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~--~~l-Eama~G~Pvi~~~~ 126 (159)
.+.+.+.+.+-.-+|.. ...++.+.+.+++..+|+++...-+-.+.. .+. .+...|+|+|....
T Consensus 101 v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~ 168 (679)
T PRK14851 101 VMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGP 168 (679)
T ss_pred HHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeec
Confidence 34555555554334443 467788888899999999886443222221 222 35678999998764
No 301
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=34.51 E-value=1.5e+02 Score=20.19 Aligned_cols=69 Identities=10% Similarity=-0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh-hhcCCcEEEeCCCCCcee
Q 036860 63 ELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA-MAAYKPVSACDSGGPVET 132 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa-ma~G~Pvi~~~~~~~~e~ 132 (159)
.+.+.+++++-.-+|... ..+. +...+++..+|+++........-..+-++ ...|+|.+.+...|..-.
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 344555555543345444 3333 33468899999999765432211222222 457899999887665443
No 302
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=34.42 E-value=1.3e+02 Score=19.51 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=51.3
Q ss_pred EEecCCccccccCCCCC--cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhC----c-EEEeCCCC
Q 036860 32 VLYLAVNVYQFDKPHSC--GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFEC----L-CVFYTPKD 104 (159)
Q Consensus 32 vi~~~vd~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a----~-~~i~~s~~ 104 (159)
.+-||.++...-...+. |... -.+....+++.+.+++.. +.|.-.=...++.+++..| . +++.|.-+
T Consensus 4 lvlnGPNLN~LG~REp~iYG~~T----l~di~~~~~~~a~~~g~~--v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~ 77 (146)
T COG0757 4 LVLNGPNLNLLGKREPGIYGSTT----LEDIEADLEEEAAKLGVE--VEFRQSNHEGELIDWIHEARGKAGDIVINPGAY 77 (146)
T ss_pred EEEeCCCccccCCCCCCccCccc----HHHHHHHHHHHHHHcCce--EEEEecCchHHHHHHHHHhhccCCeEEEcCccc
Confidence 55667666654443322 2111 112334555566665542 5555444445566655544 3 78889888
Q ss_pred CCCccHHHHhh-hcCCcEEEe
Q 036860 105 EHFGIVPLEAM-AAYKPVSAC 124 (159)
Q Consensus 105 e~~g~~~lEam-a~G~Pvi~~ 124 (159)
..++.++.+|+ +..+|+|=-
T Consensus 78 THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 78 THTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred hhhHHHHHHHHHhcCCCEEEE
Confidence 99999999996 567798864
No 303
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.37 E-value=1.1e+02 Score=23.56 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEe
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSAC 124 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~ 124 (159)
....+++++.+.+|++-+..|.+..+-+++.+ +.+|.+-+..+. .++..+.++| -+|+|.+..
T Consensus 179 ~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~-~~~A~lniv~~~--~~~~~~a~~L~~~~GiP~~~~ 243 (430)
T cd01981 179 HDCRELKRLLHTLGIEVNVVIPEGASVDDLNE-LPKAWFNIVPYR--EYGLSAALYLEEEFGMPSVKI 243 (430)
T ss_pred chHHHHHHHHHHcCCeEEEEEcCCCCHHHHHh-hhhCeEEEEecH--HHHHHHHHHHHHHhCCCeEec
Confidence 45678888999999987778888888777755 566666665332 2356667666 579999876
No 304
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=34.21 E-value=52 Score=21.09 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=36.7
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEE
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSA 123 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~ 123 (159)
.+..-+.|+.++...+.++..+.-....+...-.-...+ ...||++.+.......-..++.. .-+.|++.
T Consensus 27 ~~~icv~g~~~~~~~L~~l~~~~~~~~~i~v~~~~~~~~----~~~C~ilyi~~~~~~~~~~i~~~-~~~~~vLt 96 (145)
T PF13689_consen 27 PFRICVLGDDPFAEALSTLAGKQVGGRPIRVRRLSSPNE----ISGCHILYISSSESSQLPEILRK-LPGKPVLT 96 (145)
T ss_pred CeEEEEECChHHHHHHHHhhhcccCCCcEEEEECCCCcc----cccccEEEECCCChHHHHHHHHh-cCCCceEE
Confidence 355556677778888887743321122344332222122 48899998855532222234443 34566665
No 305
>PRK14057 epimerase; Provisional
Probab=34.00 E-value=1.8e+02 Score=21.00 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCC---------CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCcc
Q 036860 61 LEELKSLAERNGMS---------DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGI 109 (159)
Q Consensus 61 ~~~~~~~~~~~~~~---------~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~ 109 (159)
.....+.+++.|.+ -.+.+-+.-|-+.+..++...|.++.-|..-|||.
T Consensus 112 ~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgG 169 (254)
T PRK14057 112 LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169 (254)
T ss_pred HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCc
Confidence 44555677777752 45777788888999999999998888777777763
No 306
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=33.93 E-value=1.3e+02 Score=20.09 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCC
Q 036860 63 ELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTP 102 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s 102 (159)
++.+..++.+. .+...+..+-.|..+++++|+++|.+.
T Consensus 123 el~~~l~~~~~--~~v~~~~~s~~eqv~~~~~a~viig~h 160 (206)
T PF04577_consen 123 ELLEILKKYGF--EVVDPEDLSFEEQVKLFASAKVIIGPH 160 (206)
T ss_pred HHHHHHhhCCe--EEEeCCCCCHHHHHHHhcCCCEEEecC
Confidence 44444444443 133445566666667777777777643
No 307
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.46 E-value=1.1e+02 Score=22.77 Aligned_cols=45 Identities=20% Similarity=0.092 Sum_probs=33.7
Q ss_pred cEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeC
Q 036860 76 RVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 76 ~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~ 125 (159)
++.-+++++.++..+++-.||+-+.-.. -+..-|.-.|+|.+=+-
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VRGE-----DSFVRAq~agkPflWHI 283 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVRGE-----DSFVRAQLAGKPFLWHI 283 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceeecc-----hHHHHHHHcCCCcEEEe
Confidence 4666799999999999999999886322 34566777777776654
No 308
>PRK12346 transaldolase A; Provisional
Probab=33.42 E-value=1.4e+02 Score=22.26 Aligned_cols=95 Identities=8% Similarity=0.050 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--------CCCCccHHHHhhhcCCcEEEeCCCCC-ce
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--------DEHFGIVPLEAMAAYKPVSACDSGGP-VE 131 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--------~e~~g~~~lEama~G~Pvi~~~~~~~-~e 131 (159)
...+.++.+..+.+..|..-.+.+-.++. .+..||.+..|.. .+.....+....+.....+.-+.... ..
T Consensus 205 v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~-alaG~d~lTi~p~ll~~L~~~~~~~~~~l~~~~~~~~~~~~~~e~~fr~~ 283 (316)
T PRK12346 205 VRNIYDYYKQHRYETIVMGASFRRTEQIL-ALAGCDRLTISPNLLKELQESESPVERKLIPSSQTFPRPAPMSEAEFRWE 283 (316)
T ss_pred HHHHHHHHHHcCCCcEEEecccCCHHHHH-HHhCCCEEeCCHHHHHHHHhcCCCcccccChhhhcccCCCCCCHHHHHHH
Confidence 45666667777777667666777777776 6778888876521 11111111111111100000000000 00
Q ss_pred eecc----HHHHHHHHHHhcCHHHHHHhh
Q 036860 132 TIKN----EEFSLSMAKLIQEPQMAKNMG 156 (159)
Q Consensus 132 ~i~~----~~l~~~i~~l~~~~~~~~~~~ 156 (159)
+-.+ +.+++.|+.+..|...++++-
T Consensus 284 ~~~d~mA~ekl~eGIr~F~~d~~~Le~~i 312 (316)
T PRK12346 284 HNQDAMAVEKLSEGIRLFAVDQRKLEDLL 312 (316)
T ss_pred hCcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 889999999998888777654
No 309
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.24 E-value=1.6e+02 Score=20.22 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHH-HhCcEEEeCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALL-FECLCVFYTP 102 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~-~~a~~~i~~s 102 (159)
+-..+++++..+.+..-.|..=|.++.+.+..+. ..+|+++..|
T Consensus 151 ~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence 3355677777776765556677999988888777 6788888743
No 310
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.98 E-value=1.9e+02 Score=20.92 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCC-CCCccHHHHhhhcCCcEEEeCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKD-EHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~-e~~g~~~lEama~G~Pvi~~~~ 126 (159)
.+....+.+.+++.|++--..++.. .++..+..-+|++-.++.. +.++ -+-++-..|+||+.+..
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~---~~~~~l~~~vd~~kIga~~~~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDT---RDVEEVADYADMLQIGSRNMQNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCh---hhHHHHHHhCCEEEECcccccCHH-HHHHHhcCCCcEEEeCC
Confidence 3456678888888887532333333 3333333447888888874 2322 33444578999999864
No 311
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=32.85 E-value=64 Score=24.72 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCC---------CCCc--------eeecc-HHHHHHHHHHhc
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDS---------GGPV--------ETIKN-EEFSLSMAKLIQ 147 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~---------~~~~--------e~i~~-~~l~~~i~~l~~ 147 (159)
.++.++|..+|++|. .++-+..|+|..-+||+-.-. |... +++.. +++.++|.....
T Consensus 278 ~di~dll~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~ 352 (388)
T COG1887 278 ADINDLLLVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDE 352 (388)
T ss_pred hhHHHHHhhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhc
Confidence 678889999999984 467899999999999998631 1111 11111 788888877766
No 312
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=32.70 E-value=1.8e+02 Score=20.61 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=34.3
Q ss_pred CCcEEEccC-CCH---HHHHHHHHhCcEEEe-CCCC--CCCccHHHHhhhcCCcEEEeCC
Q 036860 74 SDRVNFITS-CST---TERNALLFECLCVFY-TPKD--EHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 74 ~~~v~~~g~-~~~---~~l~~~~~~a~~~i~-~s~~--e~~g~~~lEama~G~Pvi~~~~ 126 (159)
..+|.|.|. +|. ++..+....||++|. -+.. .+...-+..+...|.|++.-+.
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~ 213 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL 213 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC
Confidence 357888886 554 334577889998886 3332 3333334467778999988665
No 313
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.20 E-value=1.4e+02 Score=23.11 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACD 125 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~ 125 (159)
..+++++.+.+|+.-+..|.+.-+-+++.+ +.+|.+.+..+.. .|....+.| .+|+|.+..+
T Consensus 175 ~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~~~A~~niv~~~~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 175 LEEIKRVLEGIGLKVNILFGPESNGEELRS-IPKAQFNLVLSPW--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEEcHh--hHHHHHHHHHHHhCCceEecC
Confidence 466777777777776666665555555543 4555555543332 355666666 5799998864
No 314
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.19 E-value=2.4e+02 Score=21.85 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHHH
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEFS 139 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l~ 139 (159)
.+++++.+.+|++-+..|.|.-+-+++.. +.+|.+-+..+... +..+.+.| .+|+|-+....-|+.+. +.+.
T Consensus 188 ~el~~lL~~~Gi~v~~~~~~~~t~eei~~-~~~A~lniv~~~~~--~~~~a~~Le~~fGiP~~~~~p~Gi~~t---~~~l 261 (421)
T cd01976 188 WASRILLEEMGLRVVAQWSGDGTLNEMEN-AHKAKLNLIHCYRS--MNYIARMMEEKYGIPWMEYNFFGPTKI---AESL 261 (421)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCCEEEEECcHH--HHHHHHHHHHHhCCcEEecccCCHHHH---HHHH
Confidence 56777888888876666777777777654 55566665543322 22455555 48999998642222111 5555
Q ss_pred HHHHHHhc
Q 036860 140 LSMAKLIQ 147 (159)
Q Consensus 140 ~~i~~l~~ 147 (159)
+.|.+++.
T Consensus 262 ~~ia~~~g 269 (421)
T cd01976 262 RKIAAYFD 269 (421)
T ss_pred HHHHHHhC
Confidence 55555554
No 315
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=31.91 E-value=1.9e+02 Score=20.49 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHH-HHhhhcCCcEEEeC
Q 036860 64 LKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVP-LEAMAAYKPVSACD 125 (159)
Q Consensus 64 ~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~-lEama~G~Pvi~~~ 125 (159)
..+.+.+.+-.-+|..+ ..++.+++.+++..+|+++...-....-..+ --+...|+|.|...
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 34445554433334443 4566677889999999999866432221222 22467788888754
No 316
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.89 E-value=1.8e+02 Score=20.23 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCcc-HHHHhh
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGI-VPLEAM 115 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~-~~lEam 115 (159)
..++.+.+++.|..-.+-+-+.-+-+++..+....|..+.-+..-|||. +..|.|
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDM 156 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHH
Confidence 4567777788787666777788888888888888998887777778864 455554
No 317
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.68 E-value=2.4e+02 Score=21.72 Aligned_cols=80 Identities=13% Similarity=-0.020 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhh--cCCcEEEeCCCCCceeeccHHHH
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMA--AYKPVSACDSGGPVETIKNEEFS 139 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama--~G~Pvi~~~~~~~~e~i~~~~l~ 139 (159)
.+++++.+++|+.-+-.|.|.-+-+++.. +.+|.+-+..+.. .+....+.|. +|+|.+..+.-|+.+. +.+.
T Consensus 178 ~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~-~~~A~lnlv~~~~--~~~~~A~~L~er~GiP~~~~~~~G~~~t---~~~l 251 (415)
T cd01977 178 EVLQKYFERMGIQVLSTFTGNGTYDDLRW-MHRAKLNVVNCAR--SAGYIANELKKRYGIPRLDVDGFGFEYC---AESL 251 (415)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCCEEEEEchh--HHHHHHHHHHHHhCCCeEEeccCCHHHH---HHHH
Confidence 45666777777765445666666566543 4555554432221 2345566664 7999887642221111 5555
Q ss_pred HHHHHHhc
Q 036860 140 LSMAKLIQ 147 (159)
Q Consensus 140 ~~i~~l~~ 147 (159)
+.|.+++.
T Consensus 252 ~~la~~~g 259 (415)
T cd01977 252 RKIGAFFG 259 (415)
T ss_pred HHHHHHhC
Confidence 55555554
No 318
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=31.67 E-value=1.2e+02 Score=19.41 Aligned_cols=52 Identities=27% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA 114 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa 114 (159)
+.+.+..+...++.+ .-.-+++++++..+-.++.+++-+-...+|.+.++.|
T Consensus 80 ~~~~L~~~~~~~~~~---iei~~~sHE~fK~~t~~~kavIRtGE~tPyaNvIl~a 131 (135)
T COG1869 80 LHEALLTLLTQLGNQ---IEIQYVSHEEFKLLTHESKAVIRTGECTPYANVILVA 131 (135)
T ss_pred HHHHHHHHHHhcCCC---ceEEecCHHHHHHhhccceEEEEcCCCCccceeeEec
Confidence 344455545544332 2235678999998888888888777778888877665
No 319
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=31.29 E-value=2.8e+02 Score=22.30 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcEEEccC-CCH----------HHHHHHHHhCcEEEe--CCCCCCC---ccHHHHhhhc
Q 036860 54 LRENVEYLEELKSLAERNGMSDRVNFITS-CST----------TERNALLFECLCVFY--TPKDEHF---GIVPLEAMAA 117 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~----------~~l~~~~~~a~~~i~--~s~~e~~---g~~~lEama~ 117 (159)
+.|-|..-..+.+.++.++. +|..+.. .+. .++.+++..||++++ |...+.. +-..++.|--
T Consensus 145 IiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ 222 (526)
T PRK13581 145 IIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKP 222 (526)
T ss_pred EECCCHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC
Confidence 55777777788888877775 3554432 111 146789999998886 4333333 3457777877
Q ss_pred CCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 118 YKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 118 G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
|.-+|-+..|++ +.+++|.+++.
T Consensus 223 ga~lIN~aRG~~---vde~aL~~aL~ 245 (526)
T PRK13581 223 GVRIINCARGGI---IDEAALAEALK 245 (526)
T ss_pred CeEEEECCCCce---eCHHHHHHHHh
Confidence 776666665553 44466666554
No 320
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.10 E-value=1.2e+02 Score=17.95 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH--hhhcCCcEEEeCCCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE--AMAAYKPVSACDSGG 128 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE--ama~G~Pvi~~~~~~ 128 (159)
+...+++.+++.+++-.|...+ -.++......+|+++..+... +-..-++ +.-.++||..-+...
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~~---~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAVP---ESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEec---HHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcChHh
Confidence 4567888888888864444333 345667788999988755422 2233333 345788998876433
No 321
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.74 E-value=1.9e+02 Score=20.10 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc---cCCCHHHHHHHHHh-------CcEEEeCCCCCCCccH-HHHhhhcCCcEEEeCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI---TSCSTTERNALLFE-------CLCVFYTPKDEHFGIV-PLEAMAAYKPVSACDS 126 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~-------a~~~i~~s~~e~~g~~-~lEama~G~Pvi~~~~ 126 (159)
.++..++.+.+.+.+. +.|.+. |.....++.++++. ..+-+.....-|+++. .+.|+.+|+-.|-+..
T Consensus 136 ~~~~~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~ 214 (237)
T PF00682_consen 136 PEELLELAEALAEAGA-DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTL 214 (237)
T ss_dssp HHHHHHHHHHHHHHT--SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBG
T ss_pred HHHHHHHHHHHHHcCC-eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccC
Confidence 3455666666666665 456655 66666665544433 3355555555566554 6999999999999999
Q ss_pred CCCceeecc---HHHHHHHH
Q 036860 127 GGPVETIKN---EEFSLSMA 143 (159)
Q Consensus 127 ~~~~e~i~~---~~l~~~i~ 143 (159)
.|+.+-.++ ++++..+.
T Consensus 215 ~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 215 GGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp GGGSSTTSB-BHHHHHHHHH
T ss_pred ccCCCCCCCccHHHHHHHHh
Confidence 998887777 66666554
No 322
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.52 E-value=1e+02 Score=17.47 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.7
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhhccCceeEEEecCCccccccCCC
Q 036860 2 ADVILVDSKFTANTFADTFKKLHARGIRLVVLYLAVNVYQFDKPH 46 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~~~~i~~~vi~~~vd~~~~~~~~ 46 (159)
.|.|++.-+...+.+++. +. + ++..+|-++|+..+.+..
T Consensus 19 ~~~iFt~D~~~~~~~~~~-G~---~--~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 19 YDYIFTFDRSFVEEYRNL-GA---E--NVFYLPLAANPERFRPIP 57 (79)
T ss_pred CCEEEEECHHHHHHHHHc-CC---C--CEEEccccCCHHHhCccc
Confidence 477888888878777663 21 1 377999999999988854
No 323
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=30.36 E-value=1.4e+02 Score=18.61 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEeCCCCC
Q 036860 62 EELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSACDSGGP 129 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~~~~~~ 129 (159)
+.+++.+.+.+..-++.-+ .....+...+++..+|+++..+..-..-..+.+ +...|+|+|.....|.
T Consensus 59 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 59 EAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp HHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred HHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 3445555555433345444 445567788999999999975543222222333 3457899998765443
No 324
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.22 E-value=2e+02 Score=20.41 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEc---cCCCHHHHHHHHHhC------cEEEeCCCCCCCccH-HHHhhhcCCcEEEeCCCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFI---TSCSTTERNALLFEC------LCVFYTPKDEHFGIV-PLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~a------~~~i~~s~~e~~g~~-~lEama~G~Pvi~~~~~~ 128 (159)
++..++.+.+.+.+. +.|.+. |.....++.+++... .+-+.....-|++.. .+.|+..|+-.|-+...|
T Consensus 139 ~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G 217 (259)
T cd07939 139 DFLIEFAEVAQEAGA-DRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNG 217 (259)
T ss_pred HHHHHHHHHHHHCCC-CEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 444455555555664 345554 666666666555432 344444444444443 689999999999999999
Q ss_pred Cceeecc---HHHHHHHHHH
Q 036860 129 PVETIKN---EEFSLSMAKL 145 (159)
Q Consensus 129 ~~e~i~~---~~l~~~i~~l 145 (159)
+.+-.++ ++++..+...
T Consensus 218 ~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 218 LGERAGNAALEEVVMALKHL 237 (259)
T ss_pred ccccccCcCHHHHHHHHHHh
Confidence 9988888 8888888776
No 325
>PRK08374 homoserine dehydrogenase; Provisional
Probab=30.22 E-value=43 Score=24.99 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHH--HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCc
Q 036860 89 NALL--FECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPV 130 (159)
Q Consensus 89 ~~~~--~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~ 130 (159)
.+++ ..+|+++-.+..+........++..|++||+.+.+.+.
T Consensus 84 ~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la 127 (336)
T PRK08374 84 EEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIA 127 (336)
T ss_pred HHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHH
Confidence 3555 36899997666555566678899999999999877544
No 326
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=30.12 E-value=1.6e+02 Score=19.21 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeec
Q 036860 92 LFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 92 ~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~ 134 (159)
+..+|+++..+..+.....+.+....+.||-..+.+...+++-
T Consensus 68 l~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~ 110 (157)
T PRK06719 68 IKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSFHT 110 (157)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcEEe
Confidence 5667777776655444444444433455665555444333433
No 327
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.85 E-value=2.1e+02 Score=20.54 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh-hcCCcEEEeCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM-AAYKPVSACDS 126 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam-a~G~Pvi~~~~ 126 (159)
+....+.+.+++.|++ .+....+..++..+...+|++=.++.. -....+++++ ..|+||+.+..
T Consensus 66 ~gl~~L~~~~~~~Gl~---~~Tev~d~~~v~~~~e~vdilqIgs~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 66 QGIRYLHEVCQEFGLL---SVSEIMSERQLEEAYDYLDVIQVGARN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHHcCCC---EEEeeCCHHHHHHHHhcCCEEEECccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 4677888888888874 333444445555556679988888873 2225566665 67999999864
No 328
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=29.65 E-value=1.9e+02 Score=19.87 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHc-CCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--------CC--CCccHHHHhhhcCCcEEEeCC
Q 036860 59 EYLEELKSLAERN-GMSDRVNFITSCSTTERNALLFECLCVFYTPK--------DE--HFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--------~e--~~g~~~lEama~G~Pvi~~~~ 126 (159)
++...+.+...++ +.. +..+...+..+..+.+.+||++++|-- .. ++.-.+-++...|+|++.+..
T Consensus 46 ~~~~~~~~a~~~l~G~~--~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SA 122 (212)
T cd03146 46 EYTARFYAAFESLRGVE--VSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSA 122 (212)
T ss_pred HHHHHHHHHHhhccCcE--EEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECH
Confidence 3555566666666 653 333332335566789999999999752 11 122234455667999988763
No 329
>CHL00067 rps2 ribosomal protein S2
Probab=29.53 E-value=1.9e+02 Score=20.38 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=19.7
Q ss_pred cHHHHhhhcCCcEEEe-CCCCCceeec
Q 036860 109 IVPLEAMAAYKPVSAC-DSGGPVETIK 134 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~-~~~~~~e~i~ 134 (159)
.++.||..+|.|+|+- |.......+.
T Consensus 175 ~ai~Ea~~l~IPvIaivDTn~~p~~id 201 (230)
T CHL00067 175 TALRECRKLGIPTISILDTNCDPDLAD 201 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccc
Confidence 7899999999999994 5444444443
No 330
>PRK14057 epimerase; Provisional
Probab=29.50 E-value=2.2e+02 Score=20.55 Aligned_cols=43 Identities=12% Similarity=-0.003 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHH-hCcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLF-ECLCVFYTPK 103 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-~a~~~i~~s~ 103 (159)
..+++++..+.+..-.|..=|.+..+.+..+.. .+|+++..|.
T Consensus 180 I~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 180 VAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 344555565655544466779999988877665 5999998664
No 331
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.46 E-value=83 Score=22.48 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=25.4
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEe-cCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLY-LAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~-~~vd~~~~~~~~~~ 48 (159)
|+++........++..+. .+.+ .+++ +|.|+..|.+.+..
T Consensus 5 Vvtt~~pl~~~v~~I~gd----~v~V~~l~p~~g~dpH~y~~~p~d 46 (264)
T cd01020 5 VVASTNFWGSVAEAVGGD----HVEVTSIITNPDVDPHDFEPTPTD 46 (264)
T ss_pred EEEEccHHHHHHHHHcCC----ceEEEEecCCCCCCcccCCCCHHH
Confidence 555555566555554443 2224 4777 78999999987655
No 332
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.42 E-value=2.2e+02 Score=21.20 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCC---HHH---HHHHH-HhCcEEEeC-CCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCS---TTE---RNALL-FECLCVFYT-PKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~---~~~---l~~~~-~~a~~~i~~-s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
..-+++.++++|.. +.+.+... ..+ +..+. +..|.+++. ...++..-.+-++...|+|||..+..
T Consensus 42 ~~Gi~~aa~~~G~~--v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 42 GNGAKEAGKELGVD--VTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHhCCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 34556677777753 55533221 112 23333 347766663 33344456677889999999998754
No 333
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=29.38 E-value=2.1e+02 Score=20.24 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHH-hCcEEEeCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLF-ECLCVFYTP 102 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-~a~~~i~~s 102 (159)
..+++++..+.+..-.|..=|.+..+.+.++.. .+|+++..|
T Consensus 156 I~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 156 IAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 344555555555443466669999888877664 589998863
No 334
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.21 E-value=2.8e+02 Score=21.68 Aligned_cols=81 Identities=12% Similarity=-0.033 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHH
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEF 138 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l 138 (159)
..+++++.+.+|++-+..|.|.-+-+++.. +.+|.+-+..+.. .+....|.| .+|+|.+..+.-|+.+. +.|
T Consensus 206 ~~el~~lL~~~Gl~v~~~~~~~~t~eei~~-~~~A~lniv~~~~--~~~~~A~~L~er~GiP~~~~~p~G~~~t---~~~ 279 (443)
T TIGR01862 206 AWVMRIYLEEMGIQVVATFTGDGTYDEIRL-MHKAKLNLVHCAR--SANYIANELEERYGIPWMKIDFFGFTYT---AES 279 (443)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCCEEEEEChH--HHHHHHHHHHHHhCCCeEecccCCHHHH---HHH
Confidence 356777777777766666666666666544 5555555543321 234445555 47999887652222111 455
Q ss_pred HHHHHHHhc
Q 036860 139 SLSMAKLIQ 147 (159)
Q Consensus 139 ~~~i~~l~~ 147 (159)
.+.|.+++.
T Consensus 280 l~~la~~~g 288 (443)
T TIGR01862 280 LRAIAAFFG 288 (443)
T ss_pred HHHHHHHhC
Confidence 555554443
No 335
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=29.15 E-value=60 Score=20.28 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHhCcEEEeCCC---CCCCccH--HHHhhhcCCcEEE
Q 036860 89 NALLFECLCVFYTPK---DEHFGIV--PLEAMAAYKPVSA 123 (159)
Q Consensus 89 ~~~~~~a~~~i~~s~---~e~~g~~--~lEama~G~Pvi~ 123 (159)
..+|..|+.++.+.. .++.|+. +-.|.+.|+||..
T Consensus 74 ~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~ 113 (116)
T PF09152_consen 74 RPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFL 113 (116)
T ss_dssp HHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEEE
Confidence 478999999998753 3556654 6778888999864
No 336
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.79 E-value=2e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=20.4
Q ss_pred ccHHHHhhhcCCcEEEe-CCCCCceeecc
Q 036860 108 GIVPLEAMAAYKPVSAC-DSGGPVETIKN 135 (159)
Q Consensus 108 g~~~lEama~G~Pvi~~-~~~~~~e~i~~ 135 (159)
..++.||...|+|+|+- |.....+.+.-
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~dp~~Vdy 155 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDNLTSNVDL 155 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCcccCce
Confidence 46799999999999994 54444455443
No 337
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.71 E-value=1.7e+02 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACD 125 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~ 125 (159)
...+++++.+..|+.-+..+.+..+-+++.+ +.+|.+.+..+. .+|....|.| .+|+|.+...
T Consensus 167 d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~-~~~A~~nlv~~~--~~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGTTVEELRE-LGNAKLNLVLCR--ESGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCCCHHHHHh-hccCcEEEEecH--hHHHHHHHHHHHHhCCCeEEeC
Confidence 4567777777777765555555566666655 444554444332 2456666666 3899998876
No 338
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=28.61 E-value=2.1e+02 Score=20.07 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHH-hCcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLF-ECLCVFYTPK 103 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-~a~~~i~~s~ 103 (159)
..+++++..+.+..-.|..=|.++.+.+..+.. .+|++|..|.
T Consensus 158 I~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 158 LRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 345555555555444577779999988877665 4799998654
No 339
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.31 E-value=2.7e+02 Score=21.21 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh-hhcCCcEEEeCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA-MAAYKPVSACDS 126 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa-ma~G~Pvi~~~~ 126 (159)
+....+.+.+++.|++ .+....+..++..+..-+|++-.+|..- ....++++ -..|+||+.+..
T Consensus 169 e~l~~L~~~~~~~Gl~---~~t~v~d~~~~~~l~~~vd~lkI~s~~~-~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 169 EGLKILKQVADEYGLA---VISEIVNPADVEVALDYVDVIQIGARNM-QNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HHHHHHHHHHHHcCCC---EEEeeCCHHHHHHHHHhCCeEEECcccc-cCHHHHHHHHccCCcEEEeCC
Confidence 4566778888888764 2333334444555555589888888742 22455555 467999999864
No 340
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=28.18 E-value=3.2e+02 Score=21.98 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=46.1
Q ss_pred cccccHHHHHHHHHHHHHcCCCCcEEEccCC-CH-----------HHHHHHHHhCcEEEe--CCCCCCCc---cHHHHhh
Q 036860 53 LLRENVEYLEELKSLAERNGMSDRVNFITSC-ST-----------TERNALLFECLCVFY--TPKDEHFG---IVPLEAM 115 (159)
Q Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-~~-----------~~l~~~~~~a~~~i~--~s~~e~~g---~~~lEam 115 (159)
.+.|-|..-..+.+.++.++. +|..+... +. .++.+++..||++++ |...+..+ -..++.|
T Consensus 142 gIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~m 219 (525)
T TIGR01327 142 GVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKM 219 (525)
T ss_pred EEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcC
Confidence 355777777888888877775 35544321 11 257899999998885 43334333 3466777
Q ss_pred hcCCcEEEeCCCC
Q 036860 116 AAYKPVSACDSGG 128 (159)
Q Consensus 116 a~G~Pvi~~~~~~ 128 (159)
.-|.-+|-+..|+
T Consensus 220 k~ga~lIN~aRG~ 232 (525)
T TIGR01327 220 KKGVIIVNCARGG 232 (525)
T ss_pred CCCeEEEEcCCCc
Confidence 6666566555554
No 341
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=27.49 E-value=3.1e+02 Score=21.59 Aligned_cols=81 Identities=14% Similarity=-0.050 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHH
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEF 138 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l 138 (159)
..+++++.+++|+.-+..|.|.-+-+++.. +.+|.+-+..+.. .+..+.+.| .+|+|.+..+.-|+.+. +.+
T Consensus 214 ~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~-~~~A~lniv~~~~--~~~~~A~~Le~~~GiP~~~~~~~G~~~T---~~~ 287 (457)
T TIGR01284 214 LWVLKKYFERMGIQVLSTFTGNGCYDELRW-MHRAKLNVVRCAR--SANYIANELEERYGIPRLDIDFFGFEYC---AKN 287 (457)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHh-ccccCEEEEEChH--HHHHHHHHHHHHhCCCeEecccCCHHHH---HHH
Confidence 466778888888876567777777676654 5556655543221 234455555 47999987653332211 444
Q ss_pred HHHHHHHhc
Q 036860 139 SLSMAKLIQ 147 (159)
Q Consensus 139 ~~~i~~l~~ 147 (159)
...|.+++.
T Consensus 288 l~~ia~~~g 296 (457)
T TIGR01284 288 LRKIGEFFG 296 (457)
T ss_pred HHHHHHHhC
Confidence 555544443
No 342
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=27.41 E-value=1.4e+02 Score=18.70 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.4
Q ss_pred ccEEEEcCHhhHHHHHHHhhh
Q 036860 2 ADVILVDSKFTANTFADTFKK 22 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~ 22 (159)
+|.||+.++...+.+...++.
T Consensus 77 ~D~Ii~m~~~~~~~~~~~~~~ 97 (138)
T PF01451_consen 77 ADLIITMDDSHREELCPLFPG 97 (138)
T ss_dssp SSEEEESSHHHHHHHHHHHGT
T ss_pred CCEEEEccHHHhhhhhhhcch
Confidence 699999999998888887776
No 343
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.27 E-value=2.5e+02 Score=20.41 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCCcEEEcc--CCCHHH---HHHH-HHhCcEEEe-CCCCCCCccHHHHhhhcCCcEEEeCCCCC
Q 036860 61 LEELKSLAERNGMSDRVNFIT--SCSTTE---RNAL-LFECLCVFY-TPKDEHFGIVPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g--~~~~~~---l~~~-~~~a~~~i~-~s~~e~~g~~~lEama~G~Pvi~~~~~~~ 129 (159)
..-+++.+++++....+.... +-+..+ +... -+..|.+++ |.......-.+-+|...|+|||+.+....
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 344677777776422233332 222222 3333 366666665 55567788889999999999999986543
No 344
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=27.20 E-value=2.2e+02 Score=19.79 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEeCCCC
Q 036860 63 ELKSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSACDSGG 128 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~~~~~ 128 (159)
.+.+.+++.+-.-+|..+ ..++.+++.+++..+|+++...-.-..-..+-+ +...|+|.|.....|
T Consensus 79 ~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 79 AAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred HHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 444555555433234443 455567778899999999975442111111222 345788888865443
No 345
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.18 E-value=2.8e+02 Score=21.02 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc---cCCCHHHHHHHHHhC----cEEEeCCCCCCCccH---HHHhhhcCCcEEEeCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI---TSCSTTERNALLFEC----LCVFYTPKDEHFGIV---PLEAMAAYKPVSACDSG 127 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~a----~~~i~~s~~e~~g~~---~lEama~G~Pvi~~~~~ 127 (159)
.++...+.+.+.+.+. +.|.+. |.....++.+++... ++-+--.....+|+. .++|+..|.-.|-+...
T Consensus 140 ~~~l~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~ 218 (363)
T TIGR02090 140 IDFLIKVFKRAEEAGA-DRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVN 218 (363)
T ss_pred HHHHHHHHHHHHhCCC-CEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEee
Confidence 3455555555666665 456555 666666666555543 222222233445544 58999999999999999
Q ss_pred CCceeecc---HHHHHHHHHH
Q 036860 128 GPVETIKN---EEFSLSMAKL 145 (159)
Q Consensus 128 ~~~e~i~~---~~l~~~i~~l 145 (159)
|+.+-.++ ++++..+...
T Consensus 219 GlGeraGN~~lE~vv~~L~~~ 239 (363)
T TIGR02090 219 GIGERAGNAALEEVVMALKYL 239 (363)
T ss_pred ccccccccccHHHHHHHHHHh
Confidence 99988887 7777777664
No 346
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=27.09 E-value=1.8e+02 Score=21.96 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=29.3
Q ss_pred ccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEe
Q 036860 80 ITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSAC 124 (159)
Q Consensus 80 ~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~ 124 (159)
...-+.+++.++++.+|++|...-.- ++..+++ ++..|++.|-+
T Consensus 53 ~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 53 VDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp --TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred EecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 35556677999999999999755433 5555544 57889998883
No 347
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=27.04 E-value=1.8e+02 Score=22.55 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc-HH
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN-EE 137 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~-~~ 137 (159)
....+++++++..|++-+..|.+..+-+|+.++- +|.+-+..+. .++..+-| .+|+|.+..+. | +.. ++
T Consensus 172 gDl~ElkrLLe~~Gl~vn~v~~~gt~l~eI~~l~-~A~lniv~~~--~~g~~L~e--~~giPy~~~P~-G----i~~Td~ 241 (412)
T cd01982 172 SDLAEVKRLVTGIGAEVNHVYPFESHLAEIPKLK-NAAVNVVMYR--EFGRGLAE--DLGRPYLYAPF-G----IEETTA 241 (412)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCCCHHHHHhhc-cCCEEEEeCH--HHHHHHHH--HHCcCeEecCc-C----HHHHHH
Confidence 4568899999999998777777888888876644 4666665332 14444443 36999975431 1 111 66
Q ss_pred HHHHHHHHhc
Q 036860 138 FSLSMAKLIQ 147 (159)
Q Consensus 138 l~~~i~~l~~ 147 (159)
|...|.+++.
T Consensus 242 Flr~Lae~lG 251 (412)
T cd01982 242 FLRELGRLLG 251 (412)
T ss_pred HHHHHHHHhC
Confidence 6666666664
No 348
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.99 E-value=1.4e+02 Score=17.61 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCC
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDS 126 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~ 126 (159)
....+++.+++.+++-.|.- .+-.++.+....+|+++..+... +-..-++.. ..|+||..-+.
T Consensus 19 l~~k~~~~~~~~gi~~~v~a---~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA---GSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE---ecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 45678888888887633333 34456677788999998865422 123334443 34679988764
No 349
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.88 E-value=2.9e+02 Score=21.09 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc---cCCCHHHHHHHHHh----CcEEEeCCCCCCCccH---HHHhhhcCCcEEEeCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI---TSCSTTERNALLFE----CLCVFYTPKDEHFGIV---PLEAMAAYKPVSACDSG 127 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~----a~~~i~~s~~e~~g~~---~lEama~G~Pvi~~~~~ 127 (159)
.++...+.+.+.+.+. +.|.+. |.....++.+++.. .++-+--.....+|+. .++|+..|.-.|-+...
T Consensus 144 ~~~l~~~~~~~~~~Ga-~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~ 222 (378)
T PRK11858 144 LDFLIEFAKAAEEAGA-DRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVN 222 (378)
T ss_pred HHHHHHHHHHHHhCCC-CEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeec
Confidence 4555666666666665 356555 66666666554443 2333322334445544 58999999999999999
Q ss_pred CCceeecc---HHHHHHHHH
Q 036860 128 GPVETIKN---EEFSLSMAK 144 (159)
Q Consensus 128 ~~~e~i~~---~~l~~~i~~ 144 (159)
|+.|-.++ ++++..+..
T Consensus 223 GlGeraGNa~lE~vv~~L~~ 242 (378)
T PRK11858 223 GLGERAGNAALEEVVMALKY 242 (378)
T ss_pred cccccccCccHHHHHHHHHH
Confidence 99988888 777777764
No 350
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.65 E-value=2.4e+02 Score=20.13 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=37.3
Q ss_pred EEEccCCCHHHHHHHHHhCcEEEeCCCC---CCCccHHHHhhhcCCcEEEeCCCCCc
Q 036860 77 VNFITSCSTTERNALLFECLCVFYTPKD---EHFGIVPLEAMAAYKPVSACDSGGPV 130 (159)
Q Consensus 77 v~~~g~~~~~~l~~~~~~a~~~i~~s~~---e~~g~~~lEama~G~Pvi~~~~~~~~ 130 (159)
|...|..+.+.=..+++...+=++-++. .|+.-++--|..+|+|||.-..+...
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4455777766556777766554443443 25667889999999999998766554
No 351
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=26.49 E-value=2.2e+02 Score=19.65 Aligned_cols=39 Identities=18% Similarity=-0.054 Sum_probs=23.7
Q ss_pred CcEEEeCCCCCCCccHHHHhhhcCCcEEEe-CCCCCceeec
Q 036860 95 CLCVFYTPKDEHFGIVPLEAMAAYKPVSAC-DSGGPVETIK 134 (159)
Q Consensus 95 a~~~i~~s~~e~~g~~~lEama~G~Pvi~~-~~~~~~e~i~ 134 (159)
-|++++... ..-...+-||..+|+|+|+- |.....+.+.
T Consensus 144 P~~vii~~~-~~~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ 183 (211)
T PF00318_consen 144 PDLVIILDP-NKNKNAIREANKLNIPTIAIVDTNCNPSLID 183 (211)
T ss_dssp BSEEEESST-TTTHHHHHHHHHTTS-EEEEESTTS-GTTSS
T ss_pred CcEEEEecc-cccchhHHHHHhcCceEEEeecCCCCccccc
Confidence 345555332 23467899999999999994 5444444444
No 352
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=26.36 E-value=1.4e+02 Score=18.56 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=23.2
Q ss_pred HHHHHHHhCcEEEeCCCCCCCcc-----HHHHhhhcCCcEEEeCCCCCce
Q 036860 87 ERNALLFECLCVFYTPKDEHFGI-----VPLEAMAAYKPVSACDSGGPVE 131 (159)
Q Consensus 87 ~l~~~~~~a~~~i~~s~~e~~g~-----~~lEama~G~Pvi~~~~~~~~e 131 (159)
.+.+.+..|+++|+....+.... =+-.|+-.|+|+|+-...+...
T Consensus 63 ~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~~~~~ 112 (130)
T PF08937_consen 63 KIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVYLPGLKD 112 (130)
T ss_dssp HHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT---EEEEETT--SG
T ss_pred HHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 45667777777766443333222 2567888999999987666543
No 353
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=26.25 E-value=2.3e+02 Score=21.26 Aligned_cols=29 Identities=28% Similarity=0.152 Sum_probs=21.1
Q ss_pred CccHHHHhhhcCCcEEEe-CCCCCceeecc
Q 036860 107 FGIVPLEAMAAYKPVSAC-DSGGPVETIKN 135 (159)
Q Consensus 107 ~g~~~lEama~G~Pvi~~-~~~~~~e~i~~ 135 (159)
-..++.||..+|+|+|+- |....++.+.-
T Consensus 164 e~~AI~EA~kl~IPvIaivDTn~dp~~Idy 193 (326)
T PRK12311 164 EDIAIQEAQRLGIPVAAIVDTNCDPDGITY 193 (326)
T ss_pred chHHHHHHHHcCCCEEEEeeCCCCccccce
Confidence 467899999999999994 44444454443
No 354
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=26.10 E-value=1.7e+02 Score=22.39 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=14.7
Q ss_pred cHHHHhhhcCCcEEEeCCC
Q 036860 109 IVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 109 ~~~lEama~G~Pvi~~~~~ 127 (159)
.+++.+|.+|+|.|..+-.
T Consensus 358 g~~~~yl~ag~p~vvg~LW 376 (383)
T PF03568_consen 358 GTPLSYLLAGCPLVVGNLW 376 (383)
T ss_pred CcHHHHHhcCChheEeecc
Confidence 3578899999999886543
No 355
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.06 E-value=54 Score=22.53 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCc
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFG 108 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g 108 (159)
..++.+.+++.|..-.+-+-+..+-+.+..++...|.+++-+..-||+
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~ 141 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFG 141 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTS
T ss_pred HHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCC
Confidence 445566677777666677777777777778888888766655555554
No 356
>PRK08605 D-lactate dehydrogenase; Validated
Probab=25.90 E-value=2.8e+02 Score=20.65 Aligned_cols=74 Identities=7% Similarity=-0.047 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHHHH-HHcCCCCcEEEccCCCH----------HHHHHHHHhCcEEEe--CCCCCCC---ccHHHHhhhc
Q 036860 54 LRENVEYLEELKSLA-ERNGMSDRVNFITSCST----------TERNALLFECLCVFY--TPKDEHF---GIVPLEAMAA 117 (159)
Q Consensus 54 i~~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~----------~~l~~~~~~a~~~i~--~s~~e~~---g~~~lEama~ 117 (159)
+.|-|..-..+.+.+ +.++. +|......+. .++.+++..||++++ |...+.- +...++.|.-
T Consensus 151 IIG~G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~ 228 (332)
T PRK08605 151 VIGTGRIGLAVAKIFAKGYGS--DVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK 228 (332)
T ss_pred EECCCHHHHHHHHHHHhcCCC--EEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC
Confidence 456677666666665 43333 3444432211 256788999998886 4433333 3346788888
Q ss_pred CCcEEEeCCCCC
Q 036860 118 YKPVSACDSGGP 129 (159)
Q Consensus 118 G~Pvi~~~~~~~ 129 (159)
|.-+|-+..|+.
T Consensus 229 gailIN~sRG~~ 240 (332)
T PRK08605 229 GAVFVNCARGSL 240 (332)
T ss_pred CcEEEECCCCcc
Confidence 887777766653
No 357
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.72 E-value=2.3e+02 Score=19.57 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCC-----CHHHHHHHHHhCcEEEeCCC--------CCCCc--cHHHHhhhcCCcEEEe
Q 036860 60 YLEELKSLAERNGMSDRVNFITSC-----STTERNALLFECLCVFYTPK--------DEHFG--IVPLEAMAAYKPVSAC 124 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~-----~~~~l~~~~~~a~~~i~~s~--------~e~~g--~~~lEama~G~Pvi~~ 124 (159)
+.+.+.+...+++.. .+.++-.- .+.++.+.+.++|++++.-- +.+.+ -.+.++...|+|++.+
T Consensus 45 ~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~ 123 (217)
T cd03145 45 VGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGT 123 (217)
T ss_pred HHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEc
Confidence 345566666666764 34444322 45667889999999888532 12222 2456667789898887
Q ss_pred CC
Q 036860 125 DS 126 (159)
Q Consensus 125 ~~ 126 (159)
..
T Consensus 124 SA 125 (217)
T cd03145 124 SA 125 (217)
T ss_pred cH
Confidence 63
No 358
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=25.70 E-value=1e+02 Score=20.51 Aligned_cols=23 Identities=4% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 136 EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 136 ~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
.+|.+.|.++++|++.++++...
T Consensus 133 ~~~~~~l~~~l~d~~~~~~L~~e 155 (159)
T TIGR03358 133 PDLRKLLQELLKDKDLLEKLLSE 155 (159)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Confidence 88999999999999999887653
No 359
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.51 E-value=2.2e+02 Score=19.24 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCC-----------CCccHHHHhhhcCCcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDE-----------HFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e-----------~~g~~~lEama~G~Pvi~~~~~ 127 (159)
...+.+.++.++.. +.+... .+ -+..+|.+++|-..+ +....+.++...|+|+++.-.|
T Consensus 12 ~~~~~~~l~~~g~~--v~~~~~--~~----~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 12 LRSVANALKRLGVE--AVVSSD--PE----EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred HHHHHHHHHHCCCc--EEEEcC--hH----HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 34555666777754 566533 22 246799999976422 2234467777889999987643
No 360
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.42 E-value=1e+02 Score=19.45 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccH--HHHhhh------cCC-cEEEeCCCCC
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIV--PLEAMA------AYK-PVSACDSGGP 129 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~--~lEama------~G~-Pvi~~~~~~~ 129 (159)
+....++..||++|. ..-|+|.. ++|+++ ..+ |++..+..+.
T Consensus 45 ~Rk~~m~~~sda~I~--lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~ 95 (133)
T PF03641_consen 45 ERKEIMIESSDAFIA--LPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGF 95 (133)
T ss_dssp HHHHHHHHHESEEEE--ES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGC
T ss_pred HHHHHHHHhCCEEEE--EecCCchHHHHHHHHHHHhhccccCCCEEEeCCcch
Confidence 334577888998886 34556654 567765 345 9999887653
No 361
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=24.99 E-value=2.6e+02 Score=19.83 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHcCCCCcEEEc-cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEeC
Q 036860 65 KSLAERNGMSDRVNFI-TSCSTTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSACD 125 (159)
Q Consensus 65 ~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~~ 125 (159)
.+.+.+++-.-+|..+ ..+..+++.++++.+|+++..+-.-..-..+-+ +...++|.|...
T Consensus 92 ~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 92 RAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred HHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 4444554433334333 456666778899999999986542211112222 356788888754
No 362
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=24.98 E-value=98 Score=20.46 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 136 EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 136 ~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
..|.+.|.++++|++.++++...
T Consensus 132 ~~~r~~l~~~l~~~~~~~~l~~e 154 (157)
T PF05591_consen 132 PAFRKLLQEILSDPEALEKLKSE 154 (157)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Confidence 88999999999999999888754
No 363
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.98 E-value=2.8e+02 Score=20.24 Aligned_cols=72 Identities=13% Similarity=-0.050 Sum_probs=42.7
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCC---------------HHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCS---------------TTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~---------------~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
+....+.|.|..-..+.+.....+. +|.....-+ ..++.+++..+|+++...-..-.+-..++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~ 228 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLS 228 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHh
Confidence 3445566888877777777777764 455543322 23567788999999985432222334555
Q ss_pred hhhcCCcEE
Q 036860 114 AMAAYKPVS 122 (159)
Q Consensus 114 ama~G~Pvi 122 (159)
.|.-+.-++
T Consensus 229 ~~k~~aliI 237 (287)
T TIGR02853 229 KLPKHAVII 237 (287)
T ss_pred cCCCCeEEE
Confidence 665554333
No 364
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=24.69 E-value=2.6e+02 Score=19.76 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--------CCCCc--cHHHHhhhcCCcEEEeCCC
Q 036860 58 VEYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--------DEHFG--IVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--------~e~~g--~~~lEama~G~Pvi~~~~~ 127 (159)
..|.+..++...++++.-.=.-+...+.+++...+..+|++...-- .-.+| -.+.|....|+|.+....|
T Consensus 48 ~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAG 127 (224)
T COG3340 48 DFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAG 127 (224)
T ss_pred HHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccC
Confidence 4567777778888876421112245567888999999999887431 11122 2478999999999998755
Q ss_pred C
Q 036860 128 G 128 (159)
Q Consensus 128 ~ 128 (159)
+
T Consensus 128 A 128 (224)
T COG3340 128 A 128 (224)
T ss_pred c
Confidence 4
No 365
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=24.57 E-value=1.1e+02 Score=20.87 Aligned_cols=41 Identities=20% Similarity=-0.074 Sum_probs=26.0
Q ss_pred HhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe-CCCCCceeec
Q 036860 93 FECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC-DSGGPVETIK 134 (159)
Q Consensus 93 ~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~-~~~~~~e~i~ 134 (159)
..=|++++... ..-..++.||..+|+|+|+- |.......+.
T Consensus 126 ~~Pdlviv~~~-~~~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ 167 (193)
T cd01425 126 RLPDLVIVLDP-RKEHQAIREASKLGIPVIAIVDTNCDPDLID 167 (193)
T ss_pred cCCCEEEEeCC-ccchHHHHHHHHcCCCEEEEecCCCCCccce
Confidence 34555555332 23367899999999999995 4444344443
No 366
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.53 E-value=3.5e+02 Score=21.19 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=43.1
Q ss_pred ccccccHHHHHHHHHHHHHcCCCCcEEEc----------------cCCCHHHHHHHHHhCcEEEeCCCCC--CCccHHHH
Q 036860 52 KLLRENVEYLEELKSLAERNGMSDRVNFI----------------TSCSTTERNALLFECLCVFYTPKDE--HFGIVPLE 113 (159)
Q Consensus 52 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~~----------------g~~~~~~l~~~~~~a~~~i~~s~~e--~~g~~~lE 113 (159)
.++.|.|++-.-..+.....+. ..|.+. ..++-+++..++..+|+++..+... -.+...+|
T Consensus 181 vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve 259 (414)
T COG0373 181 VLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVE 259 (414)
T ss_pred EEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHH
Confidence 5566777665444444444333 223333 2445578899999999999854422 22333444
Q ss_pred -hhhcCCcEEEeCCCCCcee
Q 036860 114 -AMAAYKPVSACDSGGPVET 132 (159)
Q Consensus 114 -ama~G~Pvi~~~~~~~~e~ 132 (159)
++......+.-|.+-++++
T Consensus 260 ~a~~~r~~~livDiavPRdi 279 (414)
T COG0373 260 RALKIRKRLLIVDIAVPRDV 279 (414)
T ss_pred HHHhcccCeEEEEecCCCCC
Confidence 3343334455554444443
No 367
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=24.42 E-value=34 Score=22.32 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=22.2
Q ss_pred HHhCcEEEeCCC-----------CCCCccHHHHhhhcCCcEEEeC
Q 036860 92 LFECLCVFYTPK-----------DEHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 92 ~~~a~~~i~~s~-----------~e~~g~~~lEama~G~Pvi~~~ 125 (159)
+..+|++++|.- ..++--.+.++...|.||++--
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeC 49 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAEC 49 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEc
Confidence 345666666543 2344456888899999998753
No 368
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=24.35 E-value=3.5e+02 Score=21.13 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCCC-cEEEccCCCHHHHHHHHHhCcEE--EeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeec
Q 036860 60 YLEELKSLAERNGMSD-RVNFITSCSTTERNALLFECLCV--FYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIK 134 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~a~~~--i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~ 134 (159)
..+-+++-..+.++|. -|.++...+.+.+.++++.-+.+ +.|- . |-.+++.. -+.+|||.+..|-..-++.
T Consensus 158 i~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iIPR--G--g~~Li~~v~~~a~vPVi~~~~G~CHiyvd 233 (417)
T COG0014 158 IVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPR--G--GAGLIRRVVENATVPVIEHGVGNCHIYVD 233 (417)
T ss_pred HHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeEEEcC--C--cHHHHHHHHhCCcCCEEecCcceEEEEec
Confidence 3556666667777764 68888888888888888854432 2222 2 33344443 4677999999999888888
Q ss_pred c
Q 036860 135 N 135 (159)
Q Consensus 135 ~ 135 (159)
.
T Consensus 234 ~ 234 (417)
T COG0014 234 E 234 (417)
T ss_pred c
Confidence 7
No 369
>PRK11797 D-ribose pyranase; Provisional
Probab=24.25 E-value=36 Score=21.95 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCC--CCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 59 EYLEELKSLAERNGM--SDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~--~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
+...++.+.+.+... ...+ =+.++++.++.+..++|.++|.+.....|++.++.
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~-~~~~i~r~~Fy~~a~~a~avVrTGE~~~YaNiIL~ 134 (139)
T PRK11797 79 ELHEALLTQLEQLEQHQGNTI-EIEYVSHEEFKQLTAESKAVIRTGECTPYANIILE 134 (139)
T ss_pred HHHHHHHHHHHHhhhccCCCc-ceeEECHHHHHHHHhcceEEEECCCCCCeeEEEEE
Confidence 345555556543210 1112 23467889999999999999998888888876653
No 370
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=24.24 E-value=96 Score=22.94 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=25.1
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCC
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPK 103 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~ 103 (159)
.+-...|+...+++.+.+..+|+++.|.-
T Consensus 77 T~s~V~g~~g~~~L~~al~~advVvIPAG 105 (345)
T KOG1494|consen 77 TNSSVVGFTGADGLENALKGADVVVIPAG 105 (345)
T ss_pred CCCceeccCChhHHHHHhcCCCEEEecCC
Confidence 45677799988999999999999999863
No 371
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=23.91 E-value=1.6e+02 Score=18.82 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCcEEEccCCCHHHHHHHHHhC-cEEEeCCCCCCCc-----cHHHHhh
Q 036860 74 SDRVNFITSCSTTERNALLFEC-LCVFYTPKDEHFG-----IVPLEAM 115 (159)
Q Consensus 74 ~~~v~~~g~~~~~~l~~~~~~a-~~~i~~s~~e~~g-----~~~lEam 115 (159)
+.-+.++|+++.+++..++... ..++.|......| .++.+||
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~P~~~~~~~s~~a~~aL~~am 82 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLVPDDKSVIGSTKAFSALVEAL 82 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEeeCCcccchhHHHHHHHHHHH
Confidence 4569999999999999888766 5677777643222 2356665
No 372
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.89 E-value=3.4e+02 Score=20.85 Aligned_cols=81 Identities=16% Similarity=0.034 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHH
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEF 138 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l 138 (159)
..+++++.+.+|++-+..|.+..+-+++.. +.+|.+.+..+. ..+....+.| .+|+|.+....-|..+. +.+
T Consensus 173 ~~el~~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~~--~~~~~~a~~L~~~fGip~~~~~p~G~~~t---~~~ 246 (410)
T cd01968 173 LWGVKPLLEKLGIRVLASITGDSRVDEIRR-AHRAKLNVVQCS--KSMIYLARKMEEKYGIPYIEVSFYGIRDT---SKS 246 (410)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-hhhCcEEEEEch--hHHHHHHHHHHHHhCCCeEecCcCcHHHH---HHH
Confidence 356777777777766666767766666654 455555553222 1344556666 57999886421221111 555
Q ss_pred HHHHHHHhc
Q 036860 139 SLSMAKLIQ 147 (159)
Q Consensus 139 ~~~i~~l~~ 147 (159)
.+.|.+++.
T Consensus 247 l~~ia~~~g 255 (410)
T cd01968 247 LRNIAELLG 255 (410)
T ss_pred HHHHHHHhC
Confidence 555555543
No 373
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=23.70 E-value=3.3e+02 Score=20.63 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=55.5
Q ss_pred ccccHHHHHHHHHHHHHcCCCCcEEEccCCC------------HHHHHHHHHhCcEEEeC--CCCCC---CccHHHHhhh
Q 036860 54 LRENVEYLEELKSLAERNGMSDRVNFITSCS------------TTERNALLFECLCVFYT--PKDEH---FGIVPLEAMA 116 (159)
Q Consensus 54 i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~------------~~~l~~~~~~a~~~i~~--s~~e~---~g~~~lEama 116 (159)
+.|-|..-..+-+..+..+ ..|.+..+.+ +.++.+++.++|++++. ...+. +.-..+++|-
T Consensus 167 ilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 167 ILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred EecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 4566777777777777666 3466664421 12567889999988863 33333 4556899998
Q ss_pred cCCcEEEeCCCCCceeeccHHHHHHHH
Q 036860 117 AYKPVSACDSGGPVETIKNEEFSLSMA 143 (159)
Q Consensus 117 ~G~Pvi~~~~~~~~e~i~~~~l~~~i~ 143 (159)
=|.-+|-+..|+. +.++++.+++.
T Consensus 245 ~g~vlVN~aRG~i---ide~~l~eaL~ 268 (336)
T KOG0069|consen 245 DGAVLVNTARGAI---IDEEALVEALK 268 (336)
T ss_pred CCeEEEecccccc---ccHHHHHHHHh
Confidence 8888888887764 33355555553
No 374
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.12 E-value=2.9e+02 Score=19.81 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEc--cCCCHHH---HHHHHH---hCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCC
Q 036860 60 YLEELKSLAERNGMSDRVNFI--TSCSTTE---RNALLF---ECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~--g~~~~~~---l~~~~~---~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
....+++.+++.+.. +.+. ..-...+ +..+++ ..|.+++.+......-.+-++...|+|||..+..
T Consensus 18 ~~~gi~~~~~~~g~~--v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (305)
T cd06324 18 VARFMQAAADDLGIE--LEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSG 91 (305)
T ss_pred HHHHHHHHHHhcCCe--EEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecC
Confidence 345566677777664 4433 2222222 334555 5888777443222222345556789999988753
No 375
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=23.11 E-value=1.9e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=20.3
Q ss_pred CccHHHHhhhcCCcEEEe-CCCCCceeec
Q 036860 107 FGIVPLEAMAAYKPVSAC-DSGGPVETIK 134 (159)
Q Consensus 107 ~g~~~lEama~G~Pvi~~-~~~~~~e~i~ 134 (159)
-..++.||...|+|+|+- |.....+.+.
T Consensus 120 ~~~Av~EA~~l~IP~Iai~DTn~dp~~vd 148 (196)
T TIGR01012 120 DHQALKEASEVGIPIVALCDTDNPLRYVD 148 (196)
T ss_pred ccHHHHHHHHcCCCEEEEeeCCCCCccCC
Confidence 346799999999999994 5444444444
No 376
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=3.2e+02 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCHHHHHHhhhc
Q 036860 136 EEFSLSMAKLIQEPQMAKNMGEN 158 (159)
Q Consensus 136 ~~l~~~i~~l~~~~~~~~~~~~~ 158 (159)
..+.+++++++++++.++.+.+.
T Consensus 263 ~~~~~a~kk~l~s~e~~~~~~~~ 285 (319)
T COG3181 263 AKLSAALKKALASPEWQKRLKEL 285 (319)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhc
Confidence 88899999999999998887664
No 377
>PF05025 RbsD_FucU: RbsD / FucU transport protein family; InterPro: IPR007721 RbsD is a component of the ribose operon. It was originally thought to be a high affinity ribose transport protein, but further analysis [] shows that it is a D-ribose pyranase 5.5.1.n1 from EC. It catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. It also catalyzes the conversion between beta-allofuranose and beta-allopyranose. FucU is a component of the fucose operon and is a L-fucose mutarotase 5.1.3.n2 from EC, involved in the anomeric conversion of L-fucose. It also exhibits a pyranase activity for D-ribose []. Both have been classified in the RbsD/FucU family of proteins. Members of this family are ubiquitous having been found in organisms from eubacteria to mammals.; GO: 0016853 isomerase activity, 0048029 monosaccharide binding, 0005996 monosaccharide metabolic process; PDB: 2WCV_B 3E7N_N 4A34_I 1OGF_B 1OGE_A 1OGC_A 1OGD_E 3P12_C 3P13_A 3MVK_E ....
Probab=22.88 E-value=74 Score=20.56 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHH
Q 036860 81 TSCSTTERNALLFECLCVFYTPKDEHFGIVPL 112 (159)
Q Consensus 81 g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~l 112 (159)
.++++.++.+..++|-++|.+.....||+.++
T Consensus 105 ~~i~r~~Fy~~~~~a~~vVrTGE~~pYaNiIL 136 (142)
T PF05025_consen 105 EYIEREEFYERAKKAKAVVRTGETTPYANIIL 136 (142)
T ss_dssp EEEEHHHHHHHHHTSSEEEEES--STT--EEE
T ss_pred EEeCHHHHHHHHhccEEEEEeCCCCceeEEEE
Confidence 55677899999999999999888888887654
No 378
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=22.83 E-value=1.3e+02 Score=24.83 Aligned_cols=44 Identities=23% Similarity=0.131 Sum_probs=32.4
Q ss_pred hhhcCCcEEEeCCCCCceeecc---HHHHHHHHHHhcCHHHHHHhhh
Q 036860 114 AMAAYKPVSACDSGGPVETIKN---EEFSLSMAKLIQEPQMAKNMGE 157 (159)
Q Consensus 114 ama~G~Pvi~~~~~~~~e~i~~---~~l~~~i~~l~~~~~~~~~~~~ 157 (159)
|-+.|||||+-+.+-.+|---. ++..-+-..+++|++.+-.-++
T Consensus 423 a~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~inn~allG~TgE 469 (880)
T KOG4388|consen 423 AQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAINNCALLGSTGE 469 (880)
T ss_pred HHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHhcCHHHhCcccc
Confidence 5678999999987665554333 8888888889999887654443
No 379
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=22.80 E-value=2.6e+02 Score=19.05 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCcEEEc-cCCC--HHHHHHHHHhCcEEEeCCCCCCCccHHHH-hhhcCCcEEEeCCCCCcee
Q 036860 63 ELKSLAERNGMSDRVNFI-TSCS--TTERNALLFECLCVFYTPKDEHFGIVPLE-AMAAYKPVSACDSGGPVET 132 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~-g~~~--~~~l~~~~~~a~~~i~~s~~e~~g~~~lE-ama~G~Pvi~~~~~~~~e~ 132 (159)
...+.+++++..-+|... .... .++..+++..+|+++........-..+-+ +...++|++.+...|..-.
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 334455555533344444 2332 44567899999999976442111111111 3567899999886555433
No 380
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.59 E-value=1.5e+02 Score=21.17 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=25.1
Q ss_pred EEEcCHhhHHHHHHHhhhhhccCcee-EEEecCCccccccCCCCC
Q 036860 5 ILVDSKFTANTFADTFKKLHARGIRL-VVLYLAVNVYQFDKPHSC 48 (159)
Q Consensus 5 ii~~s~~~~~~~~~~~~~~~~~~i~~-~vi~~~vd~~~~~~~~~~ 48 (159)
|+++.....+..+...+. ++.+ .++++|.|+..|.+.+..
T Consensus 5 Vv~s~~pl~~~v~~I~gd----~v~V~~lip~g~dpH~ye~~p~d 45 (266)
T cd01018 5 VAVSIEPQKYFVEKIAGD----TVDVVVLVPPGSNPHTYEPKPQQ 45 (266)
T ss_pred EEEEehhHHHHHHHHcCC----ceeEEEeeCCCCCcCCCCCCHHH
Confidence 555555566555554332 1223 477788999999887655
No 381
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.46 E-value=3e+02 Score=19.69 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEc---cCCCHHHHHHHHHhC----c---EEEeCCCCCCCccH---HHHhhhcCCcEEEe
Q 036860 58 VEYLEELKSLAERNGMSDRVNFI---TSCSTTERNALLFEC----L---CVFYTPKDEHFGIV---PLEAMAAYKPVSAC 124 (159)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~l~~~~~~a----~---~~i~~s~~e~~g~~---~lEama~G~Pvi~~ 124 (159)
.++...+.+.+.+.+. +.|.+. |.....++.++++.. + +-+--.....+|+. .++|+.+|.-.|-+
T Consensus 142 ~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~ 220 (268)
T cd07940 142 LDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVEC 220 (268)
T ss_pred HHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEE
Confidence 3445555555566664 355555 666666655444432 1 33322334455544 68999999999999
Q ss_pred CCCCCceeecc---HHHHHHHHHH
Q 036860 125 DSGGPVETIKN---EEFSLSMAKL 145 (159)
Q Consensus 125 ~~~~~~e~i~~---~~l~~~i~~l 145 (159)
..+|+.+-.++ ++++..+...
T Consensus 221 s~~GlG~~aGN~~tE~lv~~L~~~ 244 (268)
T cd07940 221 TINGIGERAGNAALEEVVMALKTR 244 (268)
T ss_pred EeeccccccccccHHHHHHHHHhc
Confidence 99999988777 8888777655
No 382
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.37 E-value=4e+02 Score=21.09 Aligned_cols=80 Identities=14% Similarity=-0.006 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh--hcCCcEEEeCCCCCceeeccHHHH
Q 036860 62 EELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM--AAYKPVSACDSGGPVETIKNEEFS 139 (159)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam--a~G~Pvi~~~~~~~~e~i~~~~l~ 139 (159)
.+++++.+.+|++-+..|.|.-+-+++.. +.+|.+-+..+... +..+.+.| .+|+|.+..+.-|+.+. +.+.
T Consensus 223 ~eik~lL~~~Gi~v~~~~sg~~t~~~i~~-~~~A~lniv~~~~~--~~~~A~~Le~~fGiP~~~~~~~Gi~~T---~~~L 296 (466)
T TIGR01282 223 WESRILLEEIGLRVVAQWSGDGTLNEMEN-APKAKLNLIHCYRS--MNYISRHMEEKYGIPWMEYNFFGPTKI---AESL 296 (466)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCCEEEEEChHH--HHHHHHHHHHHhCCceEeCCCCCHHHH---HHHH
Confidence 45777777777765555666666666544 45555555433321 12445555 47999887653332211 5555
Q ss_pred HHHHHHhc
Q 036860 140 LSMAKLIQ 147 (159)
Q Consensus 140 ~~i~~l~~ 147 (159)
+.|.+++.
T Consensus 297 r~ia~~~g 304 (466)
T TIGR01282 297 RKIAEFFD 304 (466)
T ss_pred HHHHHHHC
Confidence 55555554
No 383
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=22.35 E-value=2.2e+02 Score=18.21 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=18.3
Q ss_pred ccEEEEcCHhhHHHHHHHhhhhh
Q 036860 2 ADVILVDSKFTANTFADTFKKLH 24 (159)
Q Consensus 2 ad~ii~~s~~~~~~~~~~~~~~~ 24 (159)
+|.|+++++..++.+.+.++...
T Consensus 76 ~DlIl~M~~~~~~~l~~~~p~~~ 98 (144)
T PRK11391 76 YDLILAMESEHIAQVTAIAPEVR 98 (144)
T ss_pred CCEEEECCHHHHHHHHHHCCCCc
Confidence 69999999988888877766433
No 384
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=22.22 E-value=2.2e+02 Score=20.66 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=31.0
Q ss_pred CCCCcEEEccCCCHHHHHHHHHhC-cEEEeCCCCCCCc-----cHHHHhh
Q 036860 72 GMSDRVNFITSCSTTERNALLFEC-LCVFYTPKDEHFG-----IVPLEAM 115 (159)
Q Consensus 72 ~~~~~v~~~g~~~~~~l~~~~~~a-~~~i~~s~~e~~g-----~~~lEam 115 (159)
.....+.++|+++..++..++... ..|+.|...+.-| .++.+||
T Consensus 92 ~~~~~l~ilgF~~~~~i~~~~~~~~s~fl~P~~~~~~gs~~af~aL~~am 141 (287)
T cd00788 92 FGEPGLRLIGFKPRSTLKPYHNIKKSYFIYPDESDYKGSTRLFAALLRSC 141 (287)
T ss_pred cCCCceEEEeeccHHHCChhhccCCceeEecCcccccCcHHHHHHHHHHH
Confidence 334679999999999998877777 6777887643222 2356665
No 385
>PF03228 Adeno_VII: Adenoviral core protein VII; InterPro: IPR004912 The function of this protein is unknown. It has a conserved amino terminus of 50 residues followed by a positively charged tail, suggesting it may interact with nucleic acid. ; GO: 0019028 viral capsid
Probab=22.18 E-value=62 Score=20.14 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=13.3
Q ss_pred cEEEeCCCCCCCccHH
Q 036860 96 LCVFYTPKDEHFGIVP 111 (159)
Q Consensus 96 ~~~i~~s~~e~~g~~~ 111 (159)
.++|.||.+-|||+-.
T Consensus 2 siliSPs~ntGWGlg~ 17 (117)
T PF03228_consen 2 SILISPSNNTGWGLGT 17 (117)
T ss_pred ceEECCCCCCcccccc
Confidence 4789999999999654
No 386
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=22.15 E-value=72 Score=16.68 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=11.7
Q ss_pred HhhhcCCcEEEeCCCCCceeecc
Q 036860 113 EAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 113 Eama~G~Pvi~~~~~~~~e~i~~ 135 (159)
=|...|+|+++..-.-..+.++.
T Consensus 10 ~A~~~~lp~~~gSDAH~~~~vG~ 32 (56)
T PF13263_consen 10 LAEKYGLPFTGGSDAHFLEEVGR 32 (56)
T ss_dssp HHHHTT--EEEE--BSSGGGTTT
T ss_pred HHHHcCCCeEeEEcccChhhcCC
Confidence 35567888888765555555554
No 387
>PRK15420 fucU L-fucose mutarotase; Provisional
Probab=22.05 E-value=42 Score=21.68 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
...++++.+.+.. +++ =+.++++.++.+.-++|-++|.+.....|++.++.
T Consensus 85 ~~~~~~~~l~~~~--~~~-~i~~i~h~~Fy~~~~~a~avIrTGE~~pYaNiIL~ 135 (140)
T PRK15420 85 VERRYRNALSLQA--PCP-DIIRINRFAFYERAQKAFAIVITGERAKYGNILLK 135 (140)
T ss_pred HHHHHHHHHhhcC--CCC-ceeEeCHHHHHHHHhcCeEEEEcCCCCceeEEEEe
Confidence 4555666654311 111 23477889999999999888888888888876543
No 388
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.70 E-value=2.6e+02 Score=18.70 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHh-CcEEEeCCC
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFE-CLCVFYTPK 103 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~-a~~~i~~s~ 103 (159)
.+.+++..+.. .-.+...|.++.+.+.++++. +|.+++.|.
T Consensus 147 ~~~i~~~~~~~--~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 147 EDDLKKVKKLL--GVKVAVAGGITPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred HHHHHHHHhhc--CCCEEEECCcCHHHHHHHHhcCCCEEEEeeh
Confidence 34444444322 234778899998888898876 998887664
No 389
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.67 E-value=3.9e+02 Score=20.69 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEc------------------cCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhh--cCC
Q 036860 60 YLEELKSLAERNGMSDRVNFI------------------TSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMA--AYK 119 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~------------------g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama--~G~ 119 (159)
...+++++.+.+|++-+..+- |..+-+++.+ +.+|.+.+..+. .++....++|. +|+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~-~~~A~lniv~~~--~~~~~~a~~L~e~~Gi 246 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRD-AGNAKATIALGE--YSGRKAAKALEEKFGV 246 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHH-hccCcEEEEECh--hhhHHHHHHHHHHHCC
Confidence 468899999999997665552 4455566654 555665554332 35667777764 899
Q ss_pred cEEEeC
Q 036860 120 PVSACD 125 (159)
Q Consensus 120 Pvi~~~ 125 (159)
|-+..+
T Consensus 247 P~~~~~ 252 (428)
T cd01965 247 PYILFP 252 (428)
T ss_pred CeeecC
Confidence 999876
No 390
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=21.38 E-value=2.9e+02 Score=19.19 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=33.2
Q ss_pred CCcEEEccC-CCHH---HHHHHHHhCcEEEe-CCCC--CCCccHHHHhhhcCCcEEEeCCC
Q 036860 74 SDRVNFITS-CSTT---ERNALLFECLCVFY-TPKD--EHFGIVPLEAMAAYKPVSACDSG 127 (159)
Q Consensus 74 ~~~v~~~g~-~~~~---~l~~~~~~a~~~i~-~s~~--e~~g~~~lEama~G~Pvi~~~~~ 127 (159)
..+|.+.|. +|++ ...+.+..||++|. -+.. .+...-+-.|...|.|++.-+..
T Consensus 147 rP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 147 RPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 356777765 5653 33467788998886 2322 33333344566789999887754
No 391
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=21.26 E-value=3.6e+02 Score=20.15 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhCcEEEeCCCC-CCCccHHHHhhhcCCcEEEeC
Q 036860 84 STTERNALLFECLCVFYTPKD-EHFGIVPLEAMAAYKPVSACD 125 (159)
Q Consensus 84 ~~~~l~~~~~~a~~~i~~s~~-e~~g~~~lEama~G~Pvi~~~ 125 (159)
+.+.+.+++..+|+++..+-. |.--+.-.-+...++|++...
T Consensus 98 ~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aa 140 (307)
T cd01486 98 DVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAA 140 (307)
T ss_pred CHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 345578999999999986632 443345566677888988643
No 392
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.25 E-value=2.1e+02 Score=17.37 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhh
Q 036860 60 YLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAM 115 (159)
Q Consensus 60 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEam 115 (159)
..+.+..+++..+.+ ++.+.+.+|+...+....+.+..-..+++.-.+++.+
T Consensus 47 ~kkki~~~~~~~~vp----~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 47 SKNKFKNYCNKYNIP----YIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred HHHHHHHHHHHcCCC----EEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 455666666655443 2333456777777776655555455556665555543
No 393
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=21.23 E-value=3e+02 Score=19.31 Aligned_cols=40 Identities=20% Similarity=0.049 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCCCccHHHHhhhcCCcEEEe-CCCCCceeecc
Q 036860 95 CLCVFYTPKDEHFGIVPLEAMAAYKPVSAC-DSGGPVETIKN 135 (159)
Q Consensus 95 a~~~i~~s~~e~~g~~~lEama~G~Pvi~~-~~~~~~e~i~~ 135 (159)
=|++++... ..-..++.||...|.|+|+- |.......+.-
T Consensus 156 Pd~vii~d~-~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idy 196 (225)
T TIGR01011 156 PDLLFVIDP-VKEKIAVAEARKLGIPVVAIVDTNCDPDLVDY 196 (225)
T ss_pred CCEEEEeCC-CccHHHHHHHHHcCCCEEEEeeCCCCCcccce
Confidence 345544222 23456899999999999995 54444444443
No 394
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=21.22 E-value=2.5e+02 Score=19.62 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=27.8
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCc------cHHHHhhhcCCcEEEeCCCC
Q 036860 86 TERNALLFECLCVFYTPKDEHFG------IVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g------~~~lEama~G~Pvi~~~~~~ 128 (159)
.++...+..+++++.|+.+.... ....-|+..+++++..+..|
T Consensus 146 pe~~r~~~~a~lil~~s~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G 194 (252)
T cd07575 146 PVWSRNTNDYDLLLYVANWPAPRRAAWDTLLKARAIENQAYVIGVNRVG 194 (252)
T ss_pred hHHHHhhcCCCEEEEeCCCCCCchHHHHHHhHHHHhhccceEEEecccc
Confidence 34566667799999988642211 11334677899999887543
No 395
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.01 E-value=3.3e+02 Score=19.63 Aligned_cols=29 Identities=28% Similarity=0.177 Sum_probs=20.8
Q ss_pred CccHHHHhhhcCCcEEEe-CCCCCceeecc
Q 036860 107 FGIVPLEAMAAYKPVSAC-DSGGPVETIKN 135 (159)
Q Consensus 107 ~g~~~lEama~G~Pvi~~-~~~~~~e~i~~ 135 (159)
-..++.||-..|+|||+- |.....+.+.-
T Consensus 130 d~qAI~EA~~lnIPvIal~DTds~p~~VDy 159 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCDTDSPLEYVDI 159 (249)
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccCce
Confidence 346799999999999995 55444454443
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=20.97 E-value=3.4e+02 Score=19.84 Aligned_cols=72 Identities=15% Similarity=-0.033 Sum_probs=41.2
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCCcEEEccCCC---------------HHHHHHHHHhCcEEEeCCCCCCCccHHHH
Q 036860 49 GCDKLLRENVEYLEELKSLAERNGMSDRVNFITSCS---------------TTERNALLFECLCVFYTPKDEHFGIVPLE 113 (159)
Q Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~---------------~~~l~~~~~~a~~~i~~s~~e~~g~~~lE 113 (159)
+-...+.|.|..-..+...++.++. +|.....-+ ..++.+++..+|+++...-..-..-..++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~ 229 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLS 229 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHH
Confidence 3444566777776667777776664 355443322 23567888999999985422112223444
Q ss_pred hhhcCCcEE
Q 036860 114 AMAAYKPVS 122 (159)
Q Consensus 114 ama~G~Pvi 122 (159)
.|.-|.-++
T Consensus 230 ~~~~g~vII 238 (296)
T PRK08306 230 KMPPEALII 238 (296)
T ss_pred cCCCCcEEE
Confidence 565555444
No 397
>PRK07877 hypothetical protein; Provisional
Probab=20.86 E-value=5.3e+02 Score=21.94 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCcEE-EccCCCHHHHHHHHHhCcEEEeCCCCCCCcc---HHHHhhhcCCcEEEeC
Q 036860 64 LKSLAERNGMSDRVN-FITSCSTTERNALLFECLCVFYTPKDEHFGI---VPLEAMAAYKPVSACD 125 (159)
Q Consensus 64 ~~~~~~~~~~~~~v~-~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~---~~lEama~G~Pvi~~~ 125 (159)
..+.+.+.+-.-+|. +...++.+.+.+++..+|+++-.+-+ +.. .--.+...|+|+|...
T Consensus 165 a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 165 AARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDS--LDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEc
Confidence 344455544333344 44677888899999999999975543 332 2345688999999865
No 398
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.84 E-value=3e+02 Score=19.10 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEe
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFY 100 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~ 100 (159)
++...+.+.+++.++...+.=-|+.+.+.+.+++...|.+++
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~ 95 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF 95 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence 455667777888787644555599998889999999998876
No 399
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.73 E-value=2.5e+02 Score=22.27 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.0
Q ss_pred HHHHHHHcCCC
Q 036860 64 LKSLAERNGMS 74 (159)
Q Consensus 64 ~~~~~~~~~~~ 74 (159)
+.++..+.+..
T Consensus 97 f~emm~rqnV~ 107 (675)
T KOG4166|consen 97 FVEMMERQNVE 107 (675)
T ss_pred HHHHHHhcCCc
Confidence 34444444543
No 400
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.69 E-value=3.5e+02 Score=20.43 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCCcEEEccCCCHHH---HHH-HHHhCcEEEeCCC-CCCCccHHHHhhhcCCcEEEeCC
Q 036860 63 ELKSLAERNGMSDRVNFITSCSTTE---RNA-LLFECLCVFYTPK-DEHFGIVPLEAMAAYKPVSACDS 126 (159)
Q Consensus 63 ~~~~~~~~~~~~~~v~~~g~~~~~~---l~~-~~~~a~~~i~~s~-~e~~g~~~lEama~G~Pvi~~~~ 126 (159)
.+....+.++....+..-......+ +.. +-+..+++++-.. .+..+.++-+|-..|.|||+.|.
T Consensus 46 ~~~~~~e~~g~k~~~q~A~~~~~~Q~~qien~i~qg~~vlvi~a~d~~~l~~~i~~A~~~gikViaYDR 114 (341)
T COG4213 46 AFVKKAEALGAKVDVQSADGDEEKQLAQIENMINQGVKVLVIGAIDGGVLSNAVEKAKSEGIKVIAYDR 114 (341)
T ss_pred HHHHHHHhccchhhhhhhccChhHHHHHHHHHHhcCCCEEEEEeccchhHHHHHHHHHHcCCeEEEeec
Confidence 4445555555543444433222222 332 2345677776444 46788889999999999999884
No 401
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=20.57 E-value=95 Score=22.26 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=32.6
Q ss_pred HHHhhhcCCcEEEeCCCCCceeecc---------------H--HHHHHHHHHhcCHHHHHHhhhcC
Q 036860 111 PLEAMAAYKPVSACDSGGPVETIKN---------------E--EFSLSMAKLIQEPQMAKNMGENA 159 (159)
Q Consensus 111 ~lEama~G~Pvi~~~~~~~~e~i~~---------------~--~l~~~i~~l~~~~~~~~~~~~~a 159 (159)
+---|+|+-.|+..... ..+...+ . ++.++|..+.+++++.++|+++|
T Consensus 161 l~~~l~~~Svvl~~~~~-~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~ 225 (256)
T smart00672 161 LKYILACDSVVLKVKPE-YYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRG 225 (256)
T ss_pred HHHHHhcCceEEEeCCc-hhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHH
Confidence 44457888887776621 1111111 3 49999999999999999998875
No 402
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.54 E-value=3.2e+02 Score=19.34 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCC--------C--CCCccHHHHhhhcCCcEEEeCCCC
Q 036860 59 EYLEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPK--------D--EHFGIVPLEAMAAYKPVSACDSGG 128 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~--------~--e~~g~~~lEama~G~Pvi~~~~~~ 128 (159)
.|.+.+.+...+++.. +..+... ++..+.+..||+++++-- . .++--.+-|+...|+|++.+..|.
T Consensus 48 ~y~~~~~~af~~lG~~--v~~l~~~--~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 48 DYTAKVAEALAPLGIE--VTGIHRV--ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred HHHHHHHHHHHHCCCE--EEEeccc--hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 3455677777777764 4444322 345688999998887532 1 223334668888999999887544
No 403
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=20.54 E-value=78 Score=22.04 Aligned_cols=53 Identities=15% Similarity=0.034 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEE
Q 036860 61 LEELKSLAERNGMSDRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVS 122 (159)
Q Consensus 61 ~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi 122 (159)
...++..++.+ |.|-|.-=..-+..++..-.+.|.|.+ |+++.|+|+...--+
T Consensus 111 ~~~Ie~~ir~Y-----VaFSG~NFPhilvPLMe~~~vMiNp~R----PLViYESMs~~l~~L 163 (218)
T PF12119_consen 111 PALIESFIRSY-----VAFSGQNFPHILVPLMEEHQVMINPAR----PLVIYESMSFELDRL 163 (218)
T ss_pred HHHHHHHHHHH-----hcccCCCCcHHhhhhHhhcCeeecCCC----ceEEeEeeEEEeccc
Confidence 34555666643 778775433457899999999999998 888888887655433
No 404
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=2e+02 Score=25.50 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=15.6
Q ss_pred HHHHhhhcCCcEEEeCCCCC
Q 036860 110 VPLEAMAAYKPVSACDSGGP 129 (159)
Q Consensus 110 ~~lEama~G~Pvi~~~~~~~ 129 (159)
+++.++..|||++..+...+
T Consensus 1540 til~yL~~GcpmvvgnLWDV 1559 (1622)
T COG5155 1540 TILKYLRRGCPMVVGNLWDV 1559 (1622)
T ss_pred cHHHHHhcCCCeeeeecccc
Confidence 57889999999998765443
No 405
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=20.44 E-value=1.9e+02 Score=21.23 Aligned_cols=37 Identities=8% Similarity=-0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEe
Q 036860 86 TERNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSAC 124 (159)
Q Consensus 86 ~~l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~ 124 (159)
..+++++..-..+++|..+++.+-.++|.. |-+.+.+
T Consensus 3 ~~lr~l~~~~~~l~~p~~~Da~SAri~e~a--Gf~Ai~~ 39 (285)
T TIGR02317 3 KAFRAALAKEDILQIPGAINAMAALLAERA--GFEAIYL 39 (285)
T ss_pred HHHHHHHhCCCcEEeCCCCCHHHHHHHHHc--CCCEEEE
Confidence 345666666667777777666666666553 4444444
No 406
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=20.37 E-value=2.6e+02 Score=18.18 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=29.2
Q ss_pred CcEEEccCCCHHHHHHHHHhCcEEEeCCCCCCCccHHHHh
Q 036860 75 DRVNFITSCSTTERNALLFECLCVFYTPKDEHFGIVPLEA 114 (159)
Q Consensus 75 ~~v~~~g~~~~~~l~~~~~~a~~~i~~s~~e~~g~~~lEa 114 (159)
..+...|.-.++ .-.+++||+.++.-..|+-+-..+|+
T Consensus 94 ~k~vmVGnGaND--~laLr~ADlGI~tiq~e~v~~r~l~~ 131 (152)
T COG4087 94 EKVVMVGNGAND--ILALREADLGICTIQQEGVPERLLLT 131 (152)
T ss_pred cEEEEecCCcch--HHHhhhcccceEEeccCCcchHHHhh
Confidence 467788887766 46789999998877778877777665
No 407
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.05 E-value=1.3e+02 Score=21.84 Aligned_cols=48 Identities=13% Similarity=-0.077 Sum_probs=32.6
Q ss_pred HHHHHHhCcEEEeCCCCCCCccHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 88 RNALLFECLCVFYTPKDEHFGIVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 88 l~~~~~~a~~~i~~s~~e~~g~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
+......+|++|-.|.+++.---+-.+..+|+|+|.--.|.-.+.+..
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~ 110 (266)
T COG0289 63 LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEK 110 (266)
T ss_pred hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHH
Confidence 445667778888878777766666667778877776666655555444
No 408
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=20.03 E-value=3.4e+02 Score=19.36 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHhCcEEEeCCCCCCCc----------cHHHHhhhcCCcEEEeCCCCCceeecc
Q 036860 92 LFECLCVFYTPKDEHFG----------IVPLEAMAAYKPVSACDSGGPVETIKN 135 (159)
Q Consensus 92 ~~~a~~~i~~s~~e~~g----------~~~lEama~G~Pvi~~~~~~~~e~i~~ 135 (159)
...+++++.|+....++ ....-|+-.|+||+..+..|..-++..
T Consensus 174 ~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~S~ivdp 227 (270)
T cd07571 174 RQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANTGISAVIDP 227 (270)
T ss_pred ccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCCeeeEEECC
Confidence 35799999998532221 124567889999999887776555544
Done!