Query 036862
Match_columns 82
No_of_seqs 101 out of 125
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0y_A Epidermal growth factor 24.5 19 0.00065 25.7 0.4 6 73-78 181-186 (214)
2 2ki9_A Cannabinoid receptor 2; 24.5 8.7 0.0003 19.0 -1.0 10 70-79 14-23 (33)
3 3chb_D Cholera toxin; toxin/re 18.4 27 0.00091 22.9 0.1 18 16-33 64-92 (104)
4 1ltr_D ETB-R2, heat-labIle ent 16.8 30 0.001 22.9 0.1 18 16-33 63-91 (113)
5 1f35_A Olfactory marker protei 16.3 43 0.0015 23.5 0.8 10 64-73 132-141 (162)
6 1b44_D ETB-POL, protein (B-POL 16.0 33 0.0011 23.2 0.1 18 16-33 63-91 (129)
7 3c5b_A Putative uncharacterize 14.7 54 0.0019 25.2 1.0 14 67-80 172-185 (335)
8 1i7w_B E-cadherin, epithelial- 12.1 40 0.0014 23.1 -0.3 9 70-78 129-137 (151)
9 2w0c_T Protein P6, protein VI; 11.1 1E+02 0.0035 20.5 1.4 18 5-22 7-24 (127)
10 1q55_A EP-cadherin, C-cadherin 10.6 56 0.0019 27.3 0.0 9 70-78 857-865 (880)
No 1
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR, immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB: 3b2u_A* 3c09_A*
Probab=24.49 E-value=19 Score=25.72 Aligned_cols=6 Identities=83% Similarity=2.627 Sum_probs=5.0
Q ss_pred cccCCC
Q 036862 73 GCWGPN 78 (82)
Q Consensus 73 SCWGPn 78 (82)
.||||-
T Consensus 181 gCWGpg 186 (214)
T 3p0y_A 181 GCWGPE 186 (214)
T ss_dssp CBSSSS
T ss_pred CccCcC
Confidence 799994
No 2
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=24.47 E-value=8.7 Score=19.05 Aligned_cols=10 Identities=50% Similarity=0.989 Sum_probs=7.7
Q ss_pred eeecccCCCc
Q 036862 70 MLLGCWGPNT 79 (82)
Q Consensus 70 MyLSCWGPn~ 79 (82)
.|+-||.|..
T Consensus 14 ~F~icW~P~~ 23 (33)
T 2ki9_A 14 VLLICWFPVL 23 (33)
T ss_dssp HHTTTSSHHH
T ss_pred HHHHHHhHHH
Confidence 4788999953
No 3
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=18.36 E-value=27 Score=22.86 Aligned_cols=18 Identities=39% Similarity=0.889 Sum_probs=12.5
Q ss_pred HHHHhhcccc-----------cccccCcC
Q 036862 16 GALEAFRDQA-----------GICRWNNS 33 (82)
Q Consensus 16 gaVEalKDQ~-----------g~CRwn~~ 33 (82)
.++|.+||.. .+|-||+.
T Consensus 64 ~~~ermkdtlr~ay~t~~ki~klcvwnnk 92 (104)
T 3chb_D 64 KAIERMKDTLRIAYLTEAKVEKLCVWNNK 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEETTS
T ss_pred hHHHHHHHHHHHHHHhccchhheeeecCC
Confidence 3567777764 68999843
No 4
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=16.82 E-value=30 Score=22.86 Aligned_cols=18 Identities=39% Similarity=0.889 Sum_probs=12.7
Q ss_pred HHHHhhcccc-----------cccccCcC
Q 036862 16 GALEAFRDQA-----------GICRWNNS 33 (82)
Q Consensus 16 gaVEalKDQ~-----------g~CRwn~~ 33 (82)
.++|.+||.. .+|-||+.
T Consensus 63 ~~~ermkdtlr~ay~t~~ki~klcvwnnk 91 (113)
T 1ltr_D 63 KAIERMKDTLRITYLTETKIDKLCVWNNK 91 (113)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEETTS
T ss_pred hHHHHHHHHHHHHHHhccchhheeeecCC
Confidence 3567777764 68999843
No 5
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=16.29 E-value=43 Score=23.51 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=7.8
Q ss_pred ccccceeeec
Q 036862 64 NSMEKIMLLG 73 (82)
Q Consensus 64 ESLRtVMyLS 73 (82)
...|+|||+-
T Consensus 132 AkiRKVMYFl 141 (162)
T 1f35_A 132 AKIRKVMYFL 141 (162)
T ss_dssp HHHCSEEEEE
T ss_pred HHHHhheeEE
Confidence 4689999973
No 6
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=16.05 E-value=33 Score=23.16 Aligned_cols=18 Identities=39% Similarity=0.889 Sum_probs=12.7
Q ss_pred HHHHhhcccc-----------cccccCcC
Q 036862 16 GALEAFRDQA-----------GICRWNNS 33 (82)
Q Consensus 16 gaVEalKDQ~-----------g~CRwn~~ 33 (82)
.++|.+||.. .+|-|||.
T Consensus 63 ~~~ermkdtlr~ay~t~~ki~klcvwnnk 91 (129)
T 1b44_D 63 KAIERMKDTLRITYLTETKIDKLCVWNNK 91 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEETTS
T ss_pred hHHHHHHHHHHHHHHhccchhheeeecCC
Confidence 3567777764 68999844
No 7
>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold, icosahedral virus; 4.50A {Enterobacteria phage EPSILON15}
Probab=14.72 E-value=54 Score=25.25 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=12.0
Q ss_pred cceeeecccCCCcc
Q 036862 67 EKIMLLGCWGPNTV 80 (82)
Q Consensus 67 RtVMyLSCWGPn~~ 80 (82)
=+-+|+.+|||+++
T Consensus 172 ~tSI~~V~~g~~~v 185 (335)
T 3c5b_A 172 NTSIWFMSWGENTA 185 (335)
T ss_pred ccEEEEEEEcCCce
Confidence 46899999999875
No 8
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=12.09 E-value=40 Score=23.09 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=7.5
Q ss_pred eeecccCCC
Q 036862 70 MLLGCWGPN 78 (82)
Q Consensus 70 MyLSCWGPn 78 (82)
=||+-|||-
T Consensus 129 d~L~~wGPr 137 (151)
T 1i7w_B 129 DYLNEWGNR 137 (151)
T ss_dssp CCTTTSCGG
T ss_pred hhhcccchh
Confidence 489999994
No 9
>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=11.08 E-value=1e+02 Score=20.46 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=13.8
Q ss_pred chhHHHHHHhHHHHHhhc
Q 036862 5 AGKAWIVALSVGALEAFR 22 (82)
Q Consensus 5 ~~~aw~vAaSvgaVEalK 22 (82)
++-+||.|+.||+-.-.|
T Consensus 7 knfvwilaagvgvwfyqk 24 (127)
T 2w0c_T 7 KNFVWILAAGVGVWFYQK 24 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeecccEEEEeee
Confidence 456899999999865544
No 10
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=10.59 E-value=56 Score=27.25 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=0.0
Q ss_pred eeecccCCC
Q 036862 70 MLLGCWGPN 78 (82)
Q Consensus 70 MyLSCWGPn 78 (82)
=||+.|||-
T Consensus 857 d~L~~~gpr 865 (880)
T 1q55_A 857 NYLSDWGSR 865 (880)
T ss_dssp ---------
T ss_pred hhhcccchh
Confidence 489999994
Done!