Query 036862
Match_columns 82
No_of_seqs 101 out of 125
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b2ua2 g.3.9.1 (A:481-502) EG 63.9 0.83 6E-05 22.3 0.3 6 73-78 10-15 (26)
2 d1q33a_ d.113.1.1 (A:) NUDT9 ( 25.5 5.1 0.00037 27.8 -0.7 10 70-79 102-111 (292)
3 d3chbd_ b.40.2.1 (D:) Cholera 18.3 13 0.00091 22.8 0.1 18 16-33 63-91 (103)
4 d1f35a_ b.94.1.1 (A:) Olfactor 17.2 19 0.0013 23.7 0.8 10 64-73 132-141 (162)
5 d1h6va3 d.87.1.1 (A:367-499) M 13.2 29 0.0021 20.7 0.9 19 58-76 115-133 (133)
6 d1afsa_ c.1.7.1 (A:) 3-alpha-h 9.2 50 0.0037 21.4 1.0 17 12-29 145-161 (319)
7 d1lpva_ g.62.1.1 (A:) DM domai 9.1 18 0.0013 19.7 -1.2 16 16-31 17-32 (52)
8 d3elna1 b.82.1.19 (A:5-190) Cy 7.5 68 0.005 20.0 1.1 13 67-79 65-77 (186)
9 d1hdmb2 d.19.1.1 (B:3-87) Clas 7.3 39 0.0028 20.1 -0.2 11 72-82 31-41 (85)
10 d1li5a2 c.26.1.1 (A:1-315) Cys 7.0 76 0.0055 20.4 1.1 8 70-80 25-32 (315)
No 1
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.95 E-value=0.83 Score=22.30 Aligned_cols=6 Identities=83% Similarity=2.627 Sum_probs=4.8
Q ss_pred cccCCC
Q 036862 73 GCWGPN 78 (82)
Q Consensus 73 SCWGPn 78 (82)
.||||.
T Consensus 10 gcwgpe 15 (26)
T d3b2ua2 10 GCWGPE 15 (26)
T ss_dssp CBSSSS
T ss_pred cccCCC
Confidence 499994
No 2
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=5.1 Score=27.77 Aligned_cols=10 Identities=70% Similarity=1.358 Sum_probs=7.9
Q ss_pred eeecccCCCc
Q 036862 70 MLLGCWGPNT 79 (82)
Q Consensus 70 MyLSCWGPn~ 79 (82)
=-|.+||||-
T Consensus 102 g~l~~wGpNh 111 (292)
T d1q33a_ 102 GLLGRWGPNH 111 (292)
T ss_dssp ETCSSSEEEE
T ss_pred cccCccCccc
Confidence 3689999983
No 3
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=18.33 E-value=13 Score=22.82 Aligned_cols=18 Identities=39% Similarity=0.889 Sum_probs=12.4
Q ss_pred HHHHhhcccc-----------cccccCcC
Q 036862 16 GALEAFRDQA-----------GICRWNNS 33 (82)
Q Consensus 16 gaVEalKDQ~-----------g~CRwn~~ 33 (82)
.++|.+||.. .+|-||+.
T Consensus 63 ~~~ermkdtlr~ay~t~~ki~klcvwnnk 91 (103)
T d3chbd_ 63 KAIERMKDTLRIAYLTEAKVEKLCVWNNK 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEETTS
T ss_pred hHHHHHHHHHHHHHHhccchhheeeecCC
Confidence 3567777764 68999843
No 4
>d1f35a_ b.94.1.1 (A:) Olfactory marker protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.20 E-value=19 Score=23.73 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=7.8
Q ss_pred ccccceeeec
Q 036862 64 NSMEKIMLLG 73 (82)
Q Consensus 64 ESLRtVMyLS 73 (82)
...|+|||+-
T Consensus 132 AkiRKVMYFl 141 (162)
T d1f35a_ 132 AKIRKVMYFL 141 (162)
T ss_dssp HHHCSEEEEE
T ss_pred HHHHhheeee
Confidence 3689999973
No 5
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.20 E-value=29 Score=20.71 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.3
Q ss_pred ccccccccccceeeecccC
Q 036862 58 SVFRNKNSMEKIMLLGCWG 76 (82)
Q Consensus 58 k~k~aEESLRtVMyLSCWG 76 (82)
.......|++.++-|||-|
T Consensus 115 ~l~~~~~s~~~~~~~~cc~ 133 (133)
T d1h6va3 115 TLSVTKRSGGDILQSGCCG 133 (133)
T ss_dssp GCCCBGGGCCCCCCCSCCC
T ss_pred HhhhhhhccCCccccCCCC
Confidence 3456678899999999987
No 6
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.23 E-value=50 Score=21.43 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=13.4
Q ss_pred HHhHHHHHhhcccccccc
Q 036862 12 ALSVGALEAFRDQAGICR 29 (82)
Q Consensus 12 AaSvgaVEalKDQ~g~CR 29 (82)
.-.+.++|.|||+ |++|
T Consensus 145 ~e~~~~l~~l~~~-Gkir 161 (319)
T d1afsa_ 145 CDTWEAMEKCKDA-GLAK 161 (319)
T ss_dssp HHHHHHHHHHHHT-TSEE
T ss_pred HHHHHHHHHHHHc-CCEE
Confidence 3567899999999 6665
No 7
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.10 E-value=18 Score=19.74 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=12.7
Q ss_pred HHHHhhcccccccccC
Q 036862 16 GALEAFRDQAGICRWN 31 (82)
Q Consensus 16 gaVEalKDQ~g~CRwn 31 (82)
|.+..||++-..|+|.
T Consensus 17 G~~~~lKgHKr~C~~~ 32 (52)
T d1lpva_ 17 GLKITLKGHKRYCKFR 32 (52)
T ss_dssp TCCCTTTTCGGGCTTT
T ss_pred CceeecCCcccccCCC
Confidence 4556789998899995
No 8
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}
Probab=7.49 E-value=68 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.795 Sum_probs=9.8
Q ss_pred cceeeecccCCCc
Q 036862 67 EKIMLLGCWGPNT 79 (82)
Q Consensus 67 RtVMyLSCWGPn~ 79 (82)
+=-++|-||+|..
T Consensus 65 ~fel~li~W~pGq 77 (186)
T d3elna1 65 KFNLMILCWGEGH 77 (186)
T ss_dssp TCEEEEEEECTTC
T ss_pred CeEEEEEEccCCC
Confidence 3457788999974
No 9
>d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=7.26 E-value=39 Score=20.05 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=8.5
Q ss_pred ecccCCCccCC
Q 036862 72 LGCWGPNTVRF 82 (82)
Q Consensus 72 LSCWGPn~~~~ 82 (82)
|-||-|-..||
T Consensus 31 L~CwDP~~~~~ 41 (85)
T d1hdmb2 31 LTCWDPEENKM 41 (85)
T ss_dssp EEEEETTTTEE
T ss_pred ceeecCccCee
Confidence 78999976654
No 10
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=76 Score=20.43 Aligned_cols=8 Identities=63% Similarity=1.144 Sum_probs=0.0
Q ss_pred eeecccCCCcc
Q 036862 70 MLLGCWGPNTV 80 (82)
Q Consensus 70 MyLSCWGPn~~ 80 (82)
||. | || ||
T Consensus 25 ~yv-~-Gp-tv 32 (315)
T d1li5a2 25 MYV-C-GI-TV 32 (315)
T ss_dssp EEE-C-CC-BS
T ss_pred EEe-c-CC-cC
Done!