BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036863
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 23 HNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAW 82
N PQDYL HN+ARA VGVGPMSWD LA + +A G+CN S E +A
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA- 56
Query: 83 SSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKN 142
G+ T V++ + +P Y++ +N C + G KC YTQVVWRNSVRLGC + RCN N
Sbjct: 57 KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCN-N 114
Query: 143 GTHNFVICNYDPPGNVFGQRP 163
G F+ CNYDP GN GQRP
Sbjct: 115 GWW-FISCNYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 27 QDYLKAHNEARASV-----GVGPMSWDYKLADYSHKHAQKLKGNCNSK-------KTQVS 74
+D ++ HN+ R+ V + M+WD LA + A + + N++ +
Sbjct: 20 KDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFT 79
Query: 75 KYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGC 134
E I S + + + D YD + C C YTQVVW +S ++GC
Sbjct: 80 SLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK---KVCGHYTQVVWADSYKVGC 136
Query: 135 AKERCNK--------NGTHNFVICNYDPPGN 157
A + C K NG H ICNY P GN
Sbjct: 137 AVQFCPKVSGFDALSNGAH--FICNYGPGGN 165
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 164
YTQ+VW+ +V+LGC E C+ +V+C Y P GN+ G+ Y
Sbjct: 135 YTQMVWQETVKLGCYVEACS---NMCYVVCQYGPAGNMMGKDIY 175
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 19 LSSAHNKPQDYLKAHNEARASVGVGP-------MSWDYKLADYSHKHAQKLKGN---C-N 67
+ + HN+ + + + E R + G P ++WD +LA + + A + C N
Sbjct: 46 IVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105
Query: 68 SKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAING----TKCAVYTQ 123
++ V + + S + + T E + + + +D+ + + K YTQ
Sbjct: 106 VERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQ 165
Query: 124 VVWRNSVRLGCAKERCNK--NGTHNFVICNYDPPGNVFGQRPY 164
+VW + ++GC + + N T ++++CNY P GNV G Y
Sbjct: 166 IVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQ 161
YTQ+VW S R+GCA C + F +C Y P GN G+
Sbjct: 116 YTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQ 161
YTQ+VW S R GCA C + F +C Y P GN+ G+
Sbjct: 116 YTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGK 156
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 28 DYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGN---CNSKKTQVSKYSETIAWSS 84
+ LKAHNE R GV P+ L + ++++ L +S ++ + E +AW+S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 85 QGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGT 144
+ T E + ++N + +T +VW+N+ ++G K + +
Sbjct: 72 YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 145 HNFVICNYDPPGNV 158
FV+ Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 28 DYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGN---CNSKKTQVSKYSETIAWSS 84
+ LKAHNE R GV P+ L + ++++ L +S ++ + E +AW+S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 85 QGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGT 144
+ T E + ++N + +T +VW+N+ ++G K + +
Sbjct: 72 YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 145 HNFVICNYDPPGNV 158
FV+ Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQ 161
YTQ+VW + R GCA C + F +C Y P GN G+
Sbjct: 116 YTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQ 161
YTQ+VW + R GCA C + F +C Y P GN G+
Sbjct: 116 YTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 28/163 (17%)
Query: 27 QDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLK-GNCNS 68
QD LK HN+ R + G + W+ +LA + A + + G+
Sbjct: 47 QDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTC 106
Query: 69 KKTQVSKYSETIAWSSQGELTAAEY------VKICMDGKPLYDHNSNTCAINGTKCAVYT 122
+ + + +A + TAA+Y VK+ D Y+ + K YT
Sbjct: 107 RDVAKYQVGQNVALTGS---TAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYT 163
Query: 123 QVVWRNSVRLGCAKERCNKNGTH-NFVICNYDPPGNVFGQRPY 164
Q+VW N+ +GC + + H ++++CNY P GN + Y
Sbjct: 164 QMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 164
YTQ+ W + +LGCA CN F +C Y P GN G Y
Sbjct: 359 YTQMAWDTTYKLGCAVVFCND---FTFGVCQYGPGGNYMGHVIY 399
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFG 160
YTQVVW S +GCA +C + + +C Y P GN+ G
Sbjct: 108 YTQVVWYKSYLIGCASAKC--SSSKYLYVCQYCPAGNIRG 145
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 121 YTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFG 160
YTQVVW S +GCA +C + + +C Y P GN+ G
Sbjct: 107 YTQVVWYKSHLIGCASAKC--SSSKYLYVCQYCPAGNIRG 144
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 67 NSKKTQVSKYSETIAWSSQGELTAAEYVKICMDG-KPLYD 105
N+K+ + S ++ IAW +G+LT A+ ++ DG KPL++
Sbjct: 329 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHE 368
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 67 NSKKTQVSKYSETIAWSSQGELTAAEYVKICMDG-KPLYD 105
N+K+ + S ++ IAW +G+LT A+ ++ DG KPL++
Sbjct: 329 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHE 368
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 67 NSKKTQVSKYSETIAWSSQGELTAAEYVKICMDG-KPLYD 105
N+K+ + S ++ IAW +G+LT A+ ++ DG KPL++
Sbjct: 307 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHE 346
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 67 NSKKTQVSKYSETIAWSSQGELTAAEYVKICMDG-KPLYD 105
N+K+ + S ++ IAW +G+LT A+ ++ DG KPL++
Sbjct: 307 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHE 346
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 67 NSKKTQVSKYSETIAWSSQGELTAAEYVKICMDG-KPLYD 105
N+K+ + S ++ IAW +G+LT A+ ++ DG KPL++
Sbjct: 307 NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHE 346
>pdb|2IUE|A Chain A, Pactolus I-Domain: Functional Switching Of The Rossmann
Fold
Length = 212
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 5 SPAIFCLLAL---ATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQK 61
S ++ L+ L A HLS+ D LKA NE S +G S + + + +H K
Sbjct: 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGS----IVNMTFQHILK 58
Query: 62 LKGNCNSKKTQVSK--YSETIAWSSQGELTAAEYVKICM 98
L + + + ++ K S +A + +G+L A V IC+
Sbjct: 59 LTADSSQFQRELRKQLVSGKLA-TPKGQLDAVVQVAICL 96
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 94 VKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYD 153
V + +G P+ H S + GTK T GC KN +V C Y
Sbjct: 293 VGLMCEGAPMRAH-SPILNMEGTKIGTVTS---------GCPSPSLKKNVAMGYVPCEYS 342
Query: 154 PPGNVF 159
PG +
Sbjct: 343 RPGTML 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,446,669
Number of Sequences: 62578
Number of extensions: 208267
Number of successful extensions: 356
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 25
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)