Query 036863
Match_columns 164
No_of_seqs 111 out of 1150
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 7.1E-42 1.5E-46 235.1 15.9 135 27-164 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 1.1E-37 2.4E-42 212.5 14.5 129 24-160 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 7.8E-38 1.7E-42 213.9 13.6 130 24-158 1-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 1.2E-35 2.5E-40 206.1 13.0 125 24-155 1-144 (144)
5 cd05383 SCP_CRISP SCP_CRISP: S 100.0 1.2E-35 2.6E-40 204.7 12.5 125 25-155 2-138 (138)
6 smart00198 SCP SCP / Tpx-1 / A 100.0 1.9E-35 4E-40 204.9 12.2 127 25-155 2-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 1.3E-34 2.8E-39 199.1 12.0 123 26-153 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 1.7E-33 3.7E-38 190.0 12.5 118 26-153 1-122 (122)
9 KOG3017 Defense-related protei 100.0 9.1E-33 2E-37 204.6 10.9 137 24-164 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 3E-32 6.6E-37 188.3 10.2 123 26-153 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 3.4E-22 7.3E-27 132.5 9.2 118 30-152 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.8 1E-19 2.2E-24 123.6 11.4 107 24-152 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 5.2E-16 1.1E-20 103.9 10.6 104 27-152 2-121 (122)
14 COG2340 Uncharacterized protei 99.3 1.4E-11 3E-16 90.2 8.8 100 23-141 78-193 (207)
15 PF11054 Surface_antigen: Spor 89.5 7.3 0.00016 29.2 10.3 134 26-164 35-218 (254)
16 COG2143 Thioredoxin-related pr 68.2 6.2 0.00013 27.8 2.8 38 1-39 1-38 (182)
17 PF02402 Lysis_col: Lysis prot 67.7 2.8 6.1E-05 22.6 0.8 18 1-18 1-18 (46)
18 PF12273 RCR: Chitin synthesis 67.6 11 0.00024 25.3 3.9 22 31-52 20-41 (130)
19 KOG4439 RNA polymerase II tran 64.9 6.2 0.00013 34.4 2.7 44 20-63 779-844 (901)
20 PF07172 GRP: Glycine rich pro 64.7 6.2 0.00013 25.2 2.1 7 1-7 1-7 (95)
21 PF13956 Ibs_toxin: Toxin Ibs, 64.1 4 8.6E-05 17.6 0.8 12 2-13 2-13 (19)
22 PRK09973 putative outer membra 63.8 22 0.00047 22.2 4.3 23 1-23 1-23 (85)
23 PF08139 LPAM_1: Prokaryotic m 62.4 3 6.5E-05 19.7 0.3 12 2-13 8-19 (25)
24 PRK10598 lipoprotein; Provisio 62.3 12 0.00025 27.1 3.4 43 1-43 1-49 (186)
25 TIGR03044 PS_II_psb27 photosys 58.4 24 0.00052 24.1 4.1 23 24-46 36-58 (135)
26 PF13677 MotB_plug: Membrane M 53.8 21 0.00045 20.4 2.9 17 6-22 26-42 (58)
27 PRK10386 curli assembly protei 50.1 14 0.0003 25.1 2.0 23 1-23 1-23 (130)
28 PF15240 Pro-rich: Proline-ric 49.8 16 0.00034 26.2 2.3 19 8-26 2-20 (179)
29 PRK10780 periplasmic chaperone 49.5 19 0.00041 25.3 2.7 39 1-39 1-44 (165)
30 PF03032 Brevenin: Brevenin/es 49.0 9.2 0.0002 21.0 0.8 18 1-18 3-20 (46)
31 PF11839 DUF3359: Protein of u 48.1 37 0.00081 21.7 3.6 22 1-22 1-22 (96)
32 PF11336 DUF3138: Protein of u 48.0 31 0.00068 28.3 3.9 14 48-61 82-95 (514)
33 PF04202 Mfp-3: Foot protein 3 47.5 21 0.00046 21.1 2.2 16 1-16 1-16 (71)
34 PF12276 DUF3617: Protein of u 47.1 18 0.00038 25.0 2.3 16 1-16 1-16 (162)
35 COG2863 Cytochrome c553 [Energ 46.0 86 0.0019 21.0 5.2 36 24-60 56-99 (121)
36 PRK13792 lysozyme inhibitor; P 45.8 15 0.00034 24.8 1.7 23 1-23 1-23 (127)
37 KOG0286 G-protein beta subunit 45.4 19 0.00042 28.0 2.4 34 122-158 78-111 (343)
38 PF11254 DUF3053: Protein of u 44.9 68 0.0015 24.0 5.0 46 3-48 2-52 (229)
39 COG3495 Uncharacterized protei 44.7 18 0.00038 25.0 1.8 32 1-32 1-33 (166)
40 PRK15396 murein lipoprotein; P 43.9 73 0.0016 19.5 4.3 22 1-22 1-23 (78)
41 PF03207 OspD: Borrelia outer 43.4 41 0.00089 23.9 3.5 16 24-39 51-66 (254)
42 PF10828 DUF2570: Protein of u 42.2 21 0.00045 23.3 1.9 22 1-22 1-22 (110)
43 PF08194 DIM: DIM protein; In 42.0 42 0.00091 17.3 2.6 7 1-7 1-7 (36)
44 COG3026 RseB Negative regulato 39.6 55 0.0012 25.5 4.0 41 1-41 1-42 (320)
45 COG5510 Predicted small secret 39.6 27 0.00059 18.8 1.7 7 1-7 2-8 (44)
46 PF13605 DUF4141: Domain of un 37.8 42 0.00091 19.1 2.4 22 15-36 13-41 (55)
47 PF11106 YjbE: Exopolysacchari 37.2 28 0.00061 21.2 1.7 17 1-17 1-17 (80)
48 PRK10081 entericidin B membran 36.7 24 0.00052 19.5 1.3 14 1-14 2-15 (48)
49 COG3088 CcmH Uncharacterized p 35.6 1E+02 0.0023 21.5 4.5 17 47-63 30-46 (153)
50 CHL00132 psaF photosystem I su 34.5 1.2E+02 0.0025 21.9 4.7 18 1-18 1-18 (185)
51 PF03295 Pox_TAA1: Poxvirus tr 34.2 46 0.001 19.3 2.2 18 24-41 24-41 (63)
52 TIGR01614 PME_inhib pectineste 34.1 50 0.0011 23.0 3.0 21 1-21 1-21 (178)
53 COG5294 Uncharacterized protei 32.3 48 0.001 21.8 2.3 15 1-15 1-15 (113)
54 PRK11289 ampC beta-lactamase/D 32.0 84 0.0018 25.3 4.2 40 1-40 2-46 (384)
55 PRK07734 motB flagellar motor 29.9 60 0.0013 24.6 2.9 31 5-35 27-57 (259)
56 PF13158 DUF3993: Protein of u 29.8 82 0.0018 21.0 3.1 40 2-41 2-46 (122)
57 COG3784 Uncharacterized protei 29.4 32 0.00069 22.2 1.1 15 25-39 51-65 (109)
58 PF11714 Inhibitor_I53: Thromb 29.2 56 0.0012 19.5 2.0 14 1-14 1-14 (78)
59 TIGR02209 ftsL_broad cell divi 29.2 50 0.0011 20.0 2.0 10 48-57 60-69 (85)
60 PF14285 DUF4367: Domain of un 28.8 42 0.00092 23.0 1.8 39 3-41 4-42 (168)
61 PRK09455 rseB anti-sigma E fac 28.7 74 0.0016 25.1 3.3 40 1-40 1-43 (319)
62 PF11853 DUF3373: Protein of u 28.3 81 0.0017 26.5 3.5 41 1-41 1-48 (489)
63 TIGR02743 TraW type-F conjugat 27.9 2.4E+02 0.0051 20.7 5.6 32 24-61 32-63 (202)
64 PF09403 FadA: Adhesion protei 27.6 46 0.001 22.5 1.7 7 1-7 1-7 (126)
65 PF11153 DUF2931: Protein of u 27.6 43 0.00093 24.5 1.7 9 1-9 1-9 (216)
66 PF10731 Anophelin: Thrombin i 27.5 89 0.0019 18.1 2.6 7 1-7 1-7 (65)
67 TIGR01655 yxeA_fam conserved h 27.1 59 0.0013 21.3 2.2 16 1-16 1-16 (114)
68 TIGR02052 MerP mercuric transp 27.1 38 0.00082 19.9 1.2 15 1-15 1-15 (92)
69 PF08138 Sex_peptide: Sex pept 27.1 21 0.00045 20.1 0.0 14 1-14 1-14 (56)
70 PRK09041 motB flagellar motor 26.6 67 0.0014 25.3 2.7 30 5-34 34-63 (317)
71 PRK10449 heat-inducible protei 26.3 63 0.0014 22.0 2.3 14 1-14 1-14 (140)
72 PRK10523 lipoprotein involved 26.3 54 0.0012 24.6 2.1 22 1-22 2-23 (234)
73 PRK06925 flagellar motor prote 25.7 79 0.0017 23.5 2.9 31 5-35 23-53 (230)
74 PF02315 MDH: Methanol dehydro 25.4 23 0.00051 22.2 0.0 18 1-18 1-18 (93)
75 PRK13697 cytochrome c6; Provis 25.2 75 0.0016 20.2 2.4 15 1-15 1-15 (111)
76 PRK12799 motB flagellar motor 25.1 77 0.0017 26.1 2.9 31 5-35 35-65 (421)
77 PF11948 DUF3465: Protein of u 25.0 54 0.0012 22.3 1.7 14 1-14 1-14 (131)
78 PRK15240 resistance to complem 24.6 60 0.0013 23.3 2.0 17 1-17 1-17 (185)
79 PRK06778 hypothetical protein; 24.4 67 0.0014 24.9 2.3 30 5-34 30-59 (289)
80 PRK09838 periplasmic copper-bi 24.2 68 0.0015 21.2 2.0 22 1-22 1-22 (115)
81 COG4851 CamS Protein involved 23.9 63 0.0014 25.4 2.0 38 1-38 1-39 (382)
82 PRK09038 flagellar motor prote 23.8 92 0.002 24.0 3.0 30 5-34 25-54 (281)
83 PRK11443 lipoprotein; Provisio 23.4 49 0.0011 22.2 1.3 12 1-12 1-12 (124)
84 PF11777 DUF3316: Protein of u 23.2 77 0.0017 20.7 2.2 10 1-10 1-10 (114)
85 PF11337 DUF3139: Protein of u 23.0 92 0.002 19.1 2.4 15 25-39 32-46 (85)
86 COG5567 Predicted small peripl 22.5 1E+02 0.0022 17.6 2.2 18 1-18 1-18 (58)
87 PRK14859 tatA twin arginine tr 22.2 1.2E+02 0.0026 17.8 2.6 26 15-40 18-43 (63)
88 PRK15137 DNA-specific endonucl 22.0 1E+02 0.0022 23.2 2.7 22 1-22 1-22 (235)
89 KOG3136 Uncharacterized conser 21.9 1.6E+02 0.0034 20.8 3.5 11 43-53 42-52 (196)
90 PRK15058 cytochrome b562; Prov 21.7 1.4E+02 0.003 20.2 3.1 22 1-22 1-22 (128)
91 PRK05996 motB flagellar motor 21.4 66 0.0014 26.4 1.8 33 5-37 40-72 (423)
92 TIGR01165 cbiN cobalt transpor 21.1 95 0.0021 19.7 2.1 7 1-7 3-9 (91)
93 PF04863 EGF_alliinase: Alliin 20.9 1.1E+02 0.0024 17.4 2.1 16 45-60 1-16 (56)
94 PF13260 DUF4051: Protein of u 20.8 1.6E+02 0.0035 16.2 2.7 14 24-37 31-44 (54)
95 PF02553 CbiN: Cobalt transpor 20.6 1E+02 0.0022 18.8 2.1 9 1-9 1-9 (74)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=7.1e-42 Score=235.15 Aligned_cols=135 Identities=50% Similarity=0.961 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCCcccEEEEecCCCCCHHHHHHHHHhcCCCCCC
Q 036863 27 QDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDH 106 (164)
Q Consensus 27 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~geni~~~~~~~~~~~~~v~~W~~e~~~~~~ 106 (164)
++||+.||.+|+.++|++|+||++|+..||.+|++|+++|...|+.. .+|||++....+...+.++|+.|++|.+.|++
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~ 80 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLFWGSGGNWSAADAVASWVSEKKYYDY 80 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence 68999999999999999999999999999999999888899888766 59999998775556789999999999999999
Q ss_pred CCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCCCCC
Q 036863 107 NSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 164 (164)
Q Consensus 107 ~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gn~~g~~~Y 164 (164)
..+.+.. +..++|||||||+++++||||++.|.++ ...++||+|+|+||+.|++||
T Consensus 81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~-~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNG-GGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCC-CcEEEEEEeeCCCCCCCCCCC
Confidence 8877665 5689999999999999999999999873 237899999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=1.1e-37 Score=212.49 Aligned_cols=129 Identities=29% Similarity=0.548 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCCcccEEEEecCCCCCHHHHHHHHHhcCCC
Q 036863 24 NKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPL 103 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~geni~~~~~~~~~~~~~v~~W~~e~~~ 103 (164)
+.++.||+.||.+|+.++|++|+||++|+..||.||++|+..|...|+.. .+|||++.+. .++.++|+.|++|.++
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~~~~---~~~~~~v~~W~~e~~~ 76 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLAAGY---PSGTSAVDAWYDEIED 76 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEEEec---CCHHHHHHHHHhhhhh
Confidence 46899999999999999999999999999999999997766666888766 6999998764 2688999999999999
Q ss_pred CCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEecCCCCCCC
Q 036863 104 YDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFG 160 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gn~~g 160 (164)
|++..+.. +..++|||||||+++++||||++.|... ...++||+|+|+||+.|
T Consensus 77 y~~~~~~~---~~~~~h~tqmvw~~t~~vGCa~~~c~~~-~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 77 YDYSNPGF---SEATGHFTQLVWKSTTQVGCAYKDCGGA-WGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCCCC---CCcccchhhhhhhccceeeeEEEEeCCC-CeEEEEEEEECCCCCCc
Confidence 99877543 3479999999999999999999999873 24789999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=7.8e-38 Score=213.86 Aligned_cols=130 Identities=34% Similarity=0.519 Sum_probs=115.0
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCCcccEEEEecC--CCCCHHHHHHHHHhcC
Q 036863 24 NKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQ--GELTAAEYVKICMDGK 101 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~geni~~~~~--~~~~~~~~v~~W~~e~ 101 (164)
++++.||+.||.+|+.++|++|+||++|+..||.||++|+..+.+.|+....+|||++.+.. ....+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999997777667788776579999998864 4568899999999999
Q ss_pred CCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEecCCCCC
Q 036863 102 PLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNV 158 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gn~ 158 (164)
.+|++..+.. +..++||+||||+++++||||++.|+.+. .++||+|+|+||+
T Consensus 81 ~~y~~~~~~~---~~~~gh~tqmvw~~t~~vGCa~~~~~~~~--~~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF---SSKTGHFTQVVWKSSTELGVGVAKSKKGC--VYVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC---CCCCCCeEEeEecCCCceeeEEEEcCCCC--EEEEEEEeCCCCC
Confidence 9999875543 44799999999999999999999998754 7899999999985
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.2e-35 Score=206.13 Aligned_cols=125 Identities=30% Similarity=0.565 Sum_probs=108.5
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCccCCC-----------CCcccEEEEecCCC
Q 036863 24 NKPQDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQV-----------SKYSETIAWSSQGE 87 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------~~~geni~~~~~~~ 87 (164)
+++++||+.||.+|+.+. |++|+||++||..||.+|+ +|.+.|+.. ..+||||+....+.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 468999999999999994 8999999999999999999 898877542 25899998876556
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCC---eeEEEEEEecCC
Q 036863 88 LTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNG---THNFVICNYDPP 155 (164)
Q Consensus 88 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~ 155 (164)
+.+.++|+.||+|..+|++..+.+.. .++|||||||+++++||||++.|.++. ...++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCSR---VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCC---cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 78999999999999999988766543 799999999999999999999998742 457899999994
No 5
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=1.2e-35 Score=204.71 Aligned_cols=125 Identities=26% Similarity=0.439 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCccCCC-------CCcccEEEEecCCCCCHHH
Q 036863 25 KPQDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQV-------SKYSETIAWSSQGELTAAE 92 (164)
Q Consensus 25 ~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-------~~~geni~~~~~~~~~~~~ 92 (164)
.|+.||+.||.+|+.+. |++|+||++||..||.||+ +|...|++. ..+|||++.... ...+++
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSY-PRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCC-CCCHHH
Confidence 47899999999999975 7789999999999999999 899888753 147999987653 357889
Q ss_pred HHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEecCC
Q 036863 93 YVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPP 155 (164)
Q Consensus 93 ~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~ 155 (164)
+|+.||+|..+|+++.+.+.. +..++|||||||+++++||||++.|..+....++||+|+|+
T Consensus 77 av~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 999999999999998776555 66899999999999999999999998864457899999995
No 6
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=1.9e-35 Score=204.88 Aligned_cols=127 Identities=34% Similarity=0.625 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCCcccEEEEecC----CCCC
Q 036863 25 KPQDYLKAHNEARASVG-----------VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQ----GELT 89 (164)
Q Consensus 25 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~geni~~~~~----~~~~ 89 (164)
.|+.||+.||.+|+.++ |++|.||++||..||.+|+ .|...|+....+|||++.... ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence 57899999999999999 9999999999999999999 899989876689999998764 2457
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCC-eeEEEEEEecCC
Q 036863 90 AAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNG-THNFVICNYDPP 155 (164)
Q Consensus 90 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~-~~~~~vC~Y~p~ 155 (164)
+.++|+.||+|...|++..+.+...+..++|||||||+++++||||++.|.++. ...++||+|+|+
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 889999999999999998866542134789999999999999999999998863 456899999995
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.3e-34 Score=199.05 Aligned_cols=123 Identities=29% Similarity=0.527 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCccCCCC---CcccEEEEecCCCCCHHHHHHHH
Q 036863 26 PQDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVS---KYSETIAWSSQGELTAAEYVKIC 97 (164)
Q Consensus 26 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~geni~~~~~~~~~~~~~v~~W 97 (164)
|+.||+.||.+|+.++ |.+|+||++||..||.+|+ +|...|++.. .+|||++....+...+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 5789999999999986 7789999999999999999 8998887643 69999998775567899999999
Q ss_pred HhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCC-----eeEEEEEEec
Q 036863 98 MDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNG-----THNFVICNYD 153 (164)
Q Consensus 98 ~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~-----~~~~~vC~Y~ 153 (164)
|+|..+|++..+.+.. +..++||+||||+++++||||++.|..+. ...++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999999998877665 66899999999999999999999997531 3578999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=1.7e-33 Score=190.03 Aligned_cols=118 Identities=32% Similarity=0.573 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCC---CcccEEEEecCCCCCHHHHHHHHHhcC
Q 036863 26 PQDYLKAHNEARASV-GVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVS---KYSETIAWSSQGELTAAEYVKICMDGK 101 (164)
Q Consensus 26 ~~~il~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~geni~~~~~~~~~~~~~v~~W~~e~ 101 (164)
+++||+.||.+|+.+ .|++|+||++|+..||.+|+ +|.+.|+... .+|||++.+..+ .++.++|+.|++|.
T Consensus 1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~ 75 (122)
T cd00168 1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEI 75 (122)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHH
Confidence 368999999999999 99999999999999999999 8988887653 699999988744 68999999999999
Q ss_pred CCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEec
Q 036863 102 PLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYD 153 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~ 153 (164)
.+|++..... +..++||+||||+++++||||++.|+.++ .++||+|+
T Consensus 76 ~~y~~~~~~~---~~~~~h~~qmvw~~s~~vGca~~~~~~~~--~~~vC~Y~ 122 (122)
T cd00168 76 KNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGSNS--YYVVCNYG 122 (122)
T ss_pred HhCCCCCCCC---CCCccchhhhhcccCCeeeeEEEEcCCCC--EEEEEeCc
Confidence 9999985443 34689999999999999999999999754 78999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=9.1e-33 Score=204.57 Aligned_cols=137 Identities=35% Similarity=0.662 Sum_probs=117.3
Q ss_pred CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCccCC-----CCCcccEEEEecCCC------
Q 036863 24 NKPQDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQ-----VSKYSETIAWSSQGE------ 87 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-----~~~~geni~~~~~~~------ 87 (164)
+.+++|++.||.+|..+. |++|+||++||..||.||+ +|...|+. ...+|||++++....
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~ 115 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD 115 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence 677889999999999999 9999999999999999999 88887764 346799999877531
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCcccCC--CcccchhhhHHhhccCeeeEEEEEcCCCC---eeEEEEEEecCCCCCCC-C
Q 036863 88 LTAAEYVKICMDGKPLYDHNSNTCAIN--GTKCAVYTQVVWRNSVRLGCAKERCNKNG---THNFVICNYDPPGNVFG-Q 161 (164)
Q Consensus 88 ~~~~~~v~~W~~e~~~~~~~~~~~~~~--~~~~~~f~q~iw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~gn~~g-~ 161 (164)
.....+++.|+.|...|++.++.+... +..++|||||||+++++||||++.|.++. ...++||+|+|+||..+ +
T Consensus 116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~ 195 (225)
T KOG3017|consen 116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE 195 (225)
T ss_pred ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence 567789999999999999999877641 55899999999999999999999999873 47899999999965555 6
Q ss_pred CCC
Q 036863 162 RPY 164 (164)
Q Consensus 162 ~~Y 164 (164)
.||
T Consensus 196 ~~y 198 (225)
T KOG3017|consen 196 IPY 198 (225)
T ss_pred CcC
Confidence 766
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.98 E-value=3e-32 Score=188.30 Aligned_cols=123 Identities=31% Similarity=0.551 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCC---CcccEEEEecCC----
Q 036863 26 PQDYLKAHNEARASV------------GVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVS---KYSETIAWSSQG---- 86 (164)
Q Consensus 26 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~geni~~~~~~---- 86 (164)
++.||+.||.+|+.+ .|++|+||++||..|+.+|+ +|...|+... .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence 478999999999999 69999999999999999999 8988887654 699999987644
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCC-cccCCCcccchhhhHHhhccCeeeEEEEEcCCC-CeeEEEEEEec
Q 036863 87 ELTAAEYVKICMDGKPLYDHNSN-TCAINGTKCAVYTQVVWRNSVRLGCAKERCNKN-GTHNFVICNYD 153 (164)
Q Consensus 87 ~~~~~~~v~~W~~e~~~~~~~~~-~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~-~~~~~~vC~Y~ 153 (164)
...+.++|+.||+|...|++... .... ...++||+||||+++++||||++.|... ....++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 23688999999999999998875 2333 5579999999999999999999999864 34589999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.88 E-value=3.4e-22 Score=132.50 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=86.3
Q ss_pred HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCCcccEEEEecCCCCCHH---HHHHHHHhcCCCCC
Q 036863 30 LKAHNEAR-ASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAA---EYVKICMDGKPLYD 105 (164)
Q Consensus 30 l~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~geni~~~~~~~~~~~---~~v~~W~~e~~~~~ 105 (164)
|+.||.+| ....+++|+||++|+..|+.+|+ .|...+......|++............ ..+..|+.+...++
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN 76 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence 78999999 77778889999999999999999 776654444467888877663322111 12899999999887
Q ss_pred CCC--CcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEe
Q 036863 106 HNS--NTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNY 152 (164)
Q Consensus 106 ~~~--~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y 152 (164)
... ....- ...++||+||+|..+++||||++.|..+....++||.|
T Consensus 77 ~~~~~~~~~~-~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 77 FQNQSIFNSW-MNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TTCSTEESST-TSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccchhhhcc-CCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 762 11111 44789999999999999999999999875568999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.83 E-value=1e-19 Score=123.56 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=90.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCC----------------CCcccEEEEecCCC
Q 036863 24 NKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQV----------------SKYSETIAWSSQGE 87 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----------------~~~geni~~~~~~~ 87 (164)
+.++++|+.||.+|..++++||+||+.|+..|+.||++|+.++.+.|..+ ..+||||+.+.
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--- 79 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--- 79 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence 45788999999999999999999999999999999999999988888643 13589998654
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEe
Q 036863 88 LTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNY 152 (164)
Q Consensus 88 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y 152 (164)
.++..+|+.|++ +.+|+.+|+|.+.+++|||++.++++. .++|-.|
T Consensus 80 ~~~~~~v~~W~~-----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~--~y~~q~F 125 (127)
T TIGR02909 80 STVEAVHNAWMN-----------------SPGHRANILNPNYTEIGVGYVEGGSGG--IYWTQMF 125 (127)
T ss_pred CCHHHHHHHHHc-----------------CHhHHHHHcCCCcCeEeEEEEeCCCCC--eEEEEEe
Confidence 468899999943 468999999999999999999988764 5555544
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.68 E-value=5.2e-16 Score=103.88 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCCCC----------------cccEEEEecCCCCCH
Q 036863 27 QDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSK----------------YSETIAWSSQGELTA 90 (164)
Q Consensus 27 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~----------------~geni~~~~~~~~~~ 90 (164)
+.+++.+|.+|..++++||+||.+|+..|+.+|.+|+....+.|.+... +|||+..... .+
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~---~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS---TA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---CH
Confidence 5789999999999999999999999999999999998776677754321 3899877652 68
Q ss_pred HHHHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCCCCeeEEEEEEe
Q 036863 91 AEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNY 152 (164)
Q Consensus 91 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y 152 (164)
.++++.|++ ..+|+.+|+|...+++|||+..+.++. .++|..|
T Consensus 79 ~~~~~~w~~-----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~--~y~~~~f 121 (122)
T cd05379 79 EAAVDGWMN-----------------SPGHRANILNPDYTEVGVGVAYGGDGG--YYWVQVF 121 (122)
T ss_pred HHHHHHHhC-----------------CHhHHHHHcCCCcceeeEEEEeCCCCC--eEEEEec
Confidence 899999953 357999999999999999999988754 4555544
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.31 E-value=1.4e-11 Score=90.20 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=85.3
Q ss_pred CCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCccCCC--------------C--CcccEEEEecCC
Q 036863 23 HNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQV--------------S--KYSETIAWSSQG 86 (164)
Q Consensus 23 ~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~--------------~--~~geni~~~~~~ 86 (164)
++..+.+++.+|.+|..+++++|.||.+|+..|+.++.+|+++..+.|..+ . ..||||..+...
T Consensus 78 ~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~~ 157 (207)
T COG2340 78 AQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSND 157 (207)
T ss_pred chhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCCC
Confidence 367788999999999999999999999999999999999999999998653 1 479999887622
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCcccCCCcccchhhhHHhhccCeeeEEEEEcCC
Q 036863 87 ELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNK 141 (164)
Q Consensus 87 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~ 141 (164)
..+.+|+.| -.+.+|-.+|+-...+.+|-|+..-..
T Consensus 158 --~~~~~v~~W-----------------l~S~gH~~nll~~~~~~~Gv~~~~~~~ 193 (207)
T COG2340 158 --PPEAAVDGW-----------------LNSPGHRKNLLNPAYTEIGVGVAYDAS 193 (207)
T ss_pred --chHHHHHHh-----------------cCChhhhhhccCcchhheeEEEEecCC
Confidence 127999999 446689999999999999999998554
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=89.51 E-value=7.3 Score=29.25 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHhhCCCCC----------cc-c-CHHHHHHHHHHHHhhcCCCCCccCCC-CCcc----------cEEEE
Q 036863 26 PQDYLKAHNEARASVGVGP----------MS-W-DYKLADYSHKHAQKLKGNCNSKKTQV-SKYS----------ETIAW 82 (164)
Q Consensus 26 ~~~il~~hN~~R~~~~m~~----------L~-W-d~~La~~Aq~~a~~~~~~C~~~~~~~-~~~g----------eni~~ 82 (164)
.-++|+..|..|...+++. |. . +++| .....|-+ -|....++. .... -+.+.
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~GTyAf 109 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDGTYAF 109 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCCceEe
Confidence 4569999999999988432 11 1 3333 44455665 564433211 1111 12222
Q ss_pred e--cCCCCCHHHHHHHHHhcCCCCCCCCCcccCC-----CcccchhhhHHhhccCe-eeEEEEEcCCC------------
Q 036863 83 S--SQGELTAAEYVKICMDGKPLYDHNSNTCAIN-----GTKCAVYTQVVWRNSVR-LGCAKERCNKN------------ 142 (164)
Q Consensus 83 ~--~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~-----~~~~~~f~q~iw~~~~~-vGCa~~~c~~~------------ 142 (164)
. .....+..++|+.|=...++|+--.+..... ++..=.|.-|-..+.+. .-|.+..|.+.
T Consensus 110 ~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~~ 189 (254)
T PF11054_consen 110 KSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQG 189 (254)
T ss_pred eeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccccC
Confidence 2 2246689999999987777776421111110 22234566666655555 57999999541
Q ss_pred ------CeeEEEEEEecCCCC-CCCCCCC
Q 036863 143 ------GTHNFVICNYDPPGN-VFGQRPY 164 (164)
Q Consensus 143 ------~~~~~~vC~Y~p~gn-~~g~~~Y 164 (164)
...+.++|.=.|..- ..|..||
T Consensus 190 d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 190 DSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCcccccceEEEEEecCchhhcCCCCCCC
Confidence 145789999999776 6777775
No 16
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=6.2 Score=27.78 Aligned_cols=38 Identities=8% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIHLSSAHNKPQDYLKAHNEARAS 39 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~~R~~ 39 (164)
|.|.++++|+++.+++.++++..+ +..-++..-..|+.
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~e-k~s~~~~~~d~ksi 38 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNNE-KRSNIDVFDDNKSI 38 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCch-hhhhhhhHHHHHhc
Confidence 567777777777766666665533 33344454555544
No 17
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=67.66 E-value=2.8 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=10.3
Q ss_pred CCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIH 18 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (164)
|+++++++++++.++++.
T Consensus 1 MkKi~~~~i~~~~~~L~a 18 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAA 18 (46)
T ss_pred CcEEEEeHHHHHHHHHHH
Confidence 776666655555544433
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=67.60 E-value=11 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHHHHhhCCCCCcccCHHHH
Q 036863 31 KAHNEARASVGVGPMSWDYKLA 52 (164)
Q Consensus 31 ~~hN~~R~~~~m~~L~Wd~~La 52 (164)
-.||+-|...++.++.-..-|+
T Consensus 20 ~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 20 YCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHhhcCCCCcCCceecC
Confidence 4678888888877766443333
No 19
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=64.88 E-value=6.2 Score=34.38 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=35.7
Q ss_pred cCCCCchHHHHHHHHHHHhhCC----------------------CCCcccCHHHHHHHHHHHHhhc
Q 036863 20 SSAHNKPQDYLKAHNEARASVG----------------------VGPMSWDYKLADYSHKHAQKLK 63 (164)
Q Consensus 20 ~~~~~~~~~il~~hN~~R~~~~----------------------m~~L~Wd~~La~~Aq~~a~~~~ 63 (164)
+....+|+.+++..|.-+.... |-.|-||..|+++|+....+|+
T Consensus 779 qv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 779 QVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred ccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 3334789999999999888432 5578999999999999998665
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.65 E-value=6.2 Score=25.22 Aligned_cols=7 Identities=14% Similarity=0.031 Sum_probs=3.0
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
|-++.++
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 4444433
No 21
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=64.07 E-value=4 Score=17.62 Aligned_cols=12 Identities=17% Similarity=0.121 Sum_probs=4.9
Q ss_pred CCchHHHHHHHH
Q 036863 2 PRTSPAIFCLLA 13 (164)
Q Consensus 2 ~~~~~~~~~~l~ 13 (164)
-++.++++++|.
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 344444444433
No 22
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=63.84 E-value=22 Score=22.25 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=14.6
Q ss_pred CCCchHHHHHHHHHHHhhhcCCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAH 23 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~ 23 (164)
||+.+++..+++++++..++...
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 78888777666666554444443
No 23
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=62.43 E-value=3 Score=19.73 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=5.8
Q ss_pred CCchHHHHHHHH
Q 036863 2 PRTSPAIFCLLA 13 (164)
Q Consensus 2 ~~~~~~~~~~l~ 13 (164)
|++++.+++++.
T Consensus 8 Kkil~~l~a~~~ 19 (25)
T PF08139_consen 8 KKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 24
>PRK10598 lipoprotein; Provisional
Probab=62.35 E-value=12 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCchHHHHHHHHHHHhhhcCC------CCchHHHHHHHHHHHhhCCCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA------HNKPQDYLKAHNEARASVGVG 43 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~------~~~~~~il~~hN~~R~~~~m~ 43 (164)
|+++++..++++.++++.+.+. +.+.++-|..|+.+=...+.+
T Consensus 1 mk~~~~~~~~~~~~llsGC~sl~~ysISE~Ein~yL~k~~~~~k~~G~~ 49 (186)
T PRK10598 1 MKKFLFAAALLVSGLLVGCNQLTQYTISEQEINQYLAKHNNFEKQIGLP 49 (186)
T ss_pred CchHHHHHHHHHHHHHhcccccCceeecHHHHHHHHHHhccHHHhcCCC
Confidence 7877665444454444444332 245567888888888888743
No 25
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=58.43 E-value=24 Score=24.06 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHhhCCCCCcc
Q 036863 24 NKPQDYLKAHNEARASVGVGPMS 46 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~m~~L~ 46 (164)
+..++-+...+.+|....+++=.
T Consensus 36 ~Y~~DT~~Vi~tlr~~i~lpkd~ 58 (135)
T TIGR03044 36 DYVEDTLAVIQTLREAIDLPDDD 58 (135)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCC
Confidence 78899999999999999987543
No 26
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=53.81 E-value=21 Score=20.44 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhhcCC
Q 036863 6 PAIFCLLALATIHLSSA 22 (164)
Q Consensus 6 ~~~~~~l~~~~~~~~~~ 22 (164)
.++++++++..+-+...
T Consensus 26 TLLl~fFVlL~s~s~~d 42 (58)
T PF13677_consen 26 TLLLAFFVLLFSMSSVD 42 (58)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33444444444444433
No 27
>PRK10386 curli assembly protein CsgE; Provisional
Probab=50.09 E-value=14 Score=25.10 Aligned_cols=23 Identities=22% Similarity=-0.060 Sum_probs=16.8
Q ss_pred CCCchHHHHHHHHHHHhhhcCCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAH 23 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~ 23 (164)
|||++..++++++++.++...++
T Consensus 1 ~~r~~~~~l~~~~l~~~~~~~a~ 23 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGNLHAA 23 (130)
T ss_pred ChhHHHHHHHHHHHHhCcccccc
Confidence 89888877777777776655553
No 28
>PF15240 Pro-rich: Proline-rich
Probab=49.76 E-value=16 Score=26.24 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhcCCCCch
Q 036863 8 IFCLLALATIHLSSAHNKP 26 (164)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~ 26 (164)
|||||++++++.++|++..
T Consensus 2 LlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD 20 (179)
T ss_pred hhHHHHHHHHHhhhccccc
Confidence 6888899999999998543
No 29
>PRK10780 periplasmic chaperone; Provisional
Probab=49.47 E-value=19 Score=25.26 Aligned_cols=39 Identities=21% Similarity=-0.032 Sum_probs=20.9
Q ss_pred CCCchHHHHHHHHHHHhhhcCCC-----CchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIHLSSAH-----NKPQDYLKAHNEARAS 39 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~-----~~~~~il~~hN~~R~~ 39 (164)
|+++++++++++++..+....++ -+-+.|+..+..+...
T Consensus 1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~ 44 (165)
T PRK10780 1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGV 44 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHH
Confidence 88888765554444333322222 2445677666655544
No 30
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=48.99 E-value=9.2 Score=20.96 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=8.1
Q ss_pred CCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIH 18 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (164)
||+.++++|++-++.++.
T Consensus 3 lKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSL 20 (46)
T ss_pred chHHHHHHHHHHHcccch
Confidence 444444444444444443
No 31
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=48.08 E-value=37 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.159 Sum_probs=12.3
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|+.+++..+++.++++..+...
T Consensus 1 M~k~l~sal~~~~~L~~GCAst 22 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCAST 22 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCC
Confidence 7777766555554444444443
No 32
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=47.98 E-value=31 Score=28.32 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHh
Q 036863 48 DYKLADYSHKHAQK 61 (164)
Q Consensus 48 d~~La~~Aq~~a~~ 61 (164)
++++.+++|..|+.
T Consensus 82 ~d~~~~~~qqiAn~ 95 (514)
T PF11336_consen 82 NDDATEMRQQIANA 95 (514)
T ss_pred hHHHHHHHHHHHhh
Confidence 78898899998883
No 33
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=47.54 E-value=21 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=9.9
Q ss_pred CCCchHHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALAT 16 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~ 16 (164)
|..+.+.+|++|.|+-
T Consensus 1 mnn~Si~VLlaLvLIg 16 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIG 16 (71)
T ss_pred CCchhHHHHHHHHHHh
Confidence 6667777666655543
No 34
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=47.09 E-value=18 Score=25.04 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=11.6
Q ss_pred CCCchHHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALAT 16 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~ 16 (164)
|++++++++++++++.
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 8888887777766654
No 35
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=46.01 E-value=86 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHHHhhCC--------CCCcccCHHHHHHHHHHHH
Q 036863 24 NKPQDYLKAHNEARASVG--------VGPMSWDYKLADYSHKHAQ 60 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~--------m~~L~Wd~~La~~Aq~~a~ 60 (164)
..++.|+.....+|..-. +..|+ |++++..|..++.
T Consensus 56 q~~~yl~~~L~a~k~g~r~~~vM~~~a~~Ls-D~Di~~lAa~~a~ 99 (121)
T COG2863 56 QSEAYLEKQLKAYKDGKRPGPVMNAIASGLS-DEDIADLAAYYAA 99 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCcchHHHHHHhCC-HHHHHHHHHHHHh
Confidence 566778888888887654 33455 7888888888887
No 36
>PRK13792 lysozyme inhibitor; Provisional
Probab=45.77 E-value=15 Score=24.76 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=14.5
Q ss_pred CCCchHHHHHHHHHHHhhhcCCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAH 23 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~ 23 (164)
||+.++++++.++++++.++...
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~~ 23 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGSD 23 (127)
T ss_pred ChhHHHHHHHHHHhheecccCCC
Confidence 88776666666665566655553
No 37
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=45.44 E-value=19 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=21.0
Q ss_pred hhHHhhccCeeeEEEEEcCCCCeeEEEEEEecCCCCC
Q 036863 122 TQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNV 158 (164)
Q Consensus 122 ~q~iw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gn~ 158 (164)
.-+||+..|.-=-....=+. ..++.|.|+|.||.
T Consensus 78 klIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNF 111 (343)
T ss_pred eEEEEEcccccceeEEecCc---eeEEEEEECCCCCe
Confidence 36788776653333333222 36889999998875
No 38
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=44.94 E-value=68 Score=24.03 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHhhhcCCC--CchHHHHHHHHH--HHh-hCCCCCcccC
Q 036863 3 RTSPAIFCLLALATIHLSSAH--NKPQDYLKAHNE--ARA-SVGVGPMSWD 48 (164)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~--~~~~~il~~hN~--~R~-~~~m~~L~Wd 48 (164)
|++..+++++.++...+|... +.|...++.... .|+ .+.+|.|+-+
T Consensus 2 r~~~p~~al~~~l~LagCgdKEpeQR~AFi~fLQ~~i~~~~g~~vp~Lte~ 52 (229)
T PF11254_consen 2 RWFRPLLALLMVLQLAGCGDKEPEQRKAFIDFLQNRIMRSPGVRVPTLTED 52 (229)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHH
Confidence 566667777776666667665 466667777665 777 6678888743
No 39
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.74 E-value=18 Score=24.98 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=19.3
Q ss_pred CCCchHHHHHHHHHHHhhhc-CCCCchHHHHHH
Q 036863 1 MPRTSPAIFCLLALATIHLS-SAHNKPQDYLKA 32 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~-~~~~~~~~il~~ 32 (164)
|.|++++.+++++++++.+. +++..+-.++++
T Consensus 1 M~rf~~i~lL~~A~lls~plva~e~peldWldL 33 (166)
T COG3495 1 MNRFTSITLLAAALLLSAPLVAAETPELDWLDL 33 (166)
T ss_pred CchhHHHHHHHHHHHhcchhhhcccccccHHHh
Confidence 89999887777775554443 333343445544
No 40
>PRK15396 murein lipoprotein; Provisional
Probab=43.87 E-value=73 Score=19.55 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=9.4
Q ss_pred CCCc-hHHHHHHHHHHHhhhcCC
Q 036863 1 MPRT-SPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~-~~~~~~~l~~~~~~~~~~ 22 (164)
|.+. +++..+.+++++..+|..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCC
Confidence 6653 344334443444444433
No 41
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=43.38 E-value=41 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHhh
Q 036863 24 NKPQDYLKAHNEARAS 39 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~ 39 (164)
..++.||...|.+-..
T Consensus 51 skkqsil~elnqll~q 66 (254)
T PF03207_consen 51 SKKQSILSELNQLLKQ 66 (254)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456788888877554
No 42
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=42.21 E-value=21 Score=23.32 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=13.4
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|++|..+.+.++++.+......
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~ 22 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWY 22 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 7888777666665555444433
No 43
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=42.04 E-value=42 Score=17.34 Aligned_cols=7 Identities=43% Similarity=0.121 Sum_probs=4.4
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
||.+.++
T Consensus 1 Mk~l~~a 7 (36)
T PF08194_consen 1 MKCLSLA 7 (36)
T ss_pred CceeHHH
Confidence 7766663
No 44
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=39.64 E-value=55 Score=25.51 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCCchHHHHHHHHH-HHhhhcCCCCchHHHHHHHHHHHhhCC
Q 036863 1 MPRTSPAIFCLLAL-ATIHLSSAHNKPQDYLKAHNEARASVG 41 (164)
Q Consensus 1 M~~~~~~~~~~l~~-~~~~~~~~~~~~~~il~~hN~~R~~~~ 41 (164)
||...+.+++++.. ++++.+++++....+|...|..+....
T Consensus 1 mk~l~~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~ln 42 (320)
T COG3026 1 MKQLWFSLLLLLGSLLLSAAASAESASAAWLQKMNEASQSLN 42 (320)
T ss_pred CchHHHHHHHHHHHHhhhhhhhccCccHHHHHHHHHHHHhcC
Confidence 66665554444444 445555555555589999999988875
No 45
>COG5510 Predicted small secreted protein [Function unknown]
Probab=39.63 E-value=27 Score=18.83 Aligned_cols=7 Identities=29% Similarity=0.173 Sum_probs=3.2
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
|++..++
T Consensus 2 mk~t~l~ 8 (44)
T COG5510 2 MKKTILL 8 (44)
T ss_pred chHHHHH
Confidence 5554333
No 46
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=37.82 E-value=42 Score=19.14 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=11.4
Q ss_pred HHhhhcCCC-------CchHHHHHHHHHH
Q 036863 15 ATIHLSSAH-------NKPQDYLKAHNEA 36 (164)
Q Consensus 15 ~~~~~~~~~-------~~~~~il~~hN~~ 36 (164)
+..+...++ +..|.|+..-+..
T Consensus 13 ~~~~~a~AQWvV~DP~NlAQ~Iinaa~ei 41 (55)
T PF13605_consen 13 LLAGPARAQWVVTDPGNLAQNIINAAKEI 41 (55)
T ss_pred hcCCcceeEEEEeCchHHHHHHHHHHHHH
Confidence 455555555 4445555554443
No 47
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=37.16 E-value=28 Score=21.24 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=10.7
Q ss_pred CCCchHHHHHHHHHHHh
Q 036863 1 MPRTSPAIFCLLALATI 17 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~ 17 (164)
||+++..++.++.+...
T Consensus 1 MKK~~~~~~~i~~l~~~ 17 (80)
T PF11106_consen 1 MKKIIYGLFAILALASS 17 (80)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 88887766655555443
No 48
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=36.73 E-value=24 Score=19.49 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=6.4
Q ss_pred CCCchHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLAL 14 (164)
Q Consensus 1 M~~~~~~~~~~l~~ 14 (164)
||+.+.+++.++.+
T Consensus 2 mKk~i~~i~~~l~~ 15 (48)
T PRK10081 2 VKKTIAAIFSVLVL 15 (48)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555554443333
No 49
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=1e+02 Score=21.46 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.3
Q ss_pred cCHHHHHHHHHHHHhhc
Q 036863 47 WDYKLADYSHKHAQKLK 63 (164)
Q Consensus 47 Wd~~La~~Aq~~a~~~~ 63 (164)
=|++.+..|...+.++.
T Consensus 30 ~~~~qe~ra~~Lt~~LR 46 (153)
T COG3088 30 ADPAQEQRARALTEELR 46 (153)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 38899999999999884
No 50
>CHL00132 psaF photosystem I subunit III; Validated
Probab=34.49 E-value=1.2e+02 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=10.3
Q ss_pred CCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIH 18 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (164)
|+++..+++++++++.+.
T Consensus 1 mrrl~~l~l~~~l~~~~~ 18 (185)
T CHL00132 1 MKKFNLLFLLLAALLLFN 18 (185)
T ss_pred ChhHHHHHHHHHHHHhcC
Confidence 777766655555544433
No 51
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=34.23 E-value=46 Score=19.33 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHhhCC
Q 036863 24 NKPQDYLKAHNEARASVG 41 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~ 41 (164)
+..+++++.+|.+|+.-+
T Consensus 24 ~~Pe~Vi~iIN~lR~keG 41 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEG 41 (63)
T ss_pred cCHHHHHHHHHHhhhccC
Confidence 678899999999999866
No 52
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=34.15 E-value=50 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=11.6
Q ss_pred CCCchHHHHHHHHHHHhhhcC
Q 036863 1 MPRTSPAIFCLLALATIHLSS 21 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~ 21 (164)
|.+.+.++++++++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (178)
T TIGR01614 1 MASSLSLLLFLLLLSLVATSS 21 (178)
T ss_pred CchhHHHHHHHHHHccccccc
Confidence 566666655555555544444
No 53
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=48 Score=21.84 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=10.0
Q ss_pred CCCchHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALA 15 (164)
Q Consensus 1 M~~~~~~~~~~l~~~ 15 (164)
|+++++.++.+++++
T Consensus 1 MKkil~~ilall~~i 15 (113)
T COG5294 1 MKKILIGILALLLII 15 (113)
T ss_pred CcchHHHHHHHHHHH
Confidence 888877666655553
No 54
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=31.98 E-value=84 Score=25.29 Aligned_cols=40 Identities=10% Similarity=-0.080 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHHHhhhcCCC-----CchHHHHHHHHHHHhhC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAH-----NKPQDYLKAHNEARASV 40 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~-----~~~~~il~~hN~~R~~~ 40 (164)
|++.+++++.+|+++..+...++ +.++.+=+....+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~i~~~~~~~ 46 (384)
T PRK11289 2 MKMMLLLLLAALLLTASASAFAAAATPQQLKDIVDRTITPLMEEQ 46 (384)
T ss_pred cchhhHHHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHHHhC
Confidence 66666655555555443333332 23333444455555443
No 55
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=29.86 E-value=60 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHNE 35 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~ 35 (164)
++++|+||++..+-++..+...+.+.+..+.
T Consensus 27 vTlLlaFFvlL~s~s~~d~~k~~~~~~~~~~ 57 (259)
T PRK07734 27 LTLLLALFIVLFAMSSIDAAKFKQMAVAFNS 57 (259)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4455556655555555555556666665553
No 56
>PF13158 DUF3993: Protein of unknown function (DUF3993)
Probab=29.82 E-value=82 Score=21.04 Aligned_cols=40 Identities=3% Similarity=-0.043 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHhhhcC----CCCchHHHHHH-HHHHHhhCC
Q 036863 2 PRTSPAIFCLLALATIHLSS----AHNKPQDYLKA-HNEARASVG 41 (164)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~il~~-hN~~R~~~~ 41 (164)
..+..++++++++..+.++. ...+|++|+.. .+.+-.++.
T Consensus 2 ~~l~~~l~~a~lv~~~~~~~~~~~~~~~r~evf~~lQ~a~eaQ~s 46 (122)
T PF13158_consen 2 IWLVCLLCVAFLVGYSITFVGKEESKEDRKEVFETLQSAFEAQFS 46 (122)
T ss_pred hhHHHHHHHHHHHHHhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 33444444444444444433 33677777654 455544444
No 57
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.35 E-value=32 Score=22.18 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHhh
Q 036863 25 KPQDYLKAHNEARAS 39 (164)
Q Consensus 25 ~~~~il~~hN~~R~~ 39 (164)
+.+.++..+|..|..
T Consensus 51 et~alv~~IN~aR~a 65 (109)
T COG3784 51 ETQALVADINAARAA 65 (109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345688888888865
No 58
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=29.25 E-value=56 Score=19.53 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=8.3
Q ss_pred CCCchHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLAL 14 (164)
Q Consensus 1 M~~~~~~~~~~l~~ 14 (164)
||.|.++++++.+.
T Consensus 1 MKhFaiLilavVaS 14 (78)
T PF11714_consen 1 MKHFAILILAVVAS 14 (78)
T ss_pred CchHHHHHHHHHHH
Confidence 77776665554443
No 59
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.22 E-value=50 Score=20.00 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=5.4
Q ss_pred CHHHHHHHHH
Q 036863 48 DYKLADYSHK 57 (164)
Q Consensus 48 d~~La~~Aq~ 57 (164)
++.++..|+.
T Consensus 60 ~~rIe~~Ar~ 69 (85)
T TIGR02209 60 HERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 60
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=28.76 E-value=42 Score=23.00 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhhCC
Q 036863 3 RTSPAIFCLLALATIHLSSAHNKPQDYLKAHNEARASVG 41 (164)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~~R~~~~ 41 (164)
|...+++++++++++........|..+++.....+....
T Consensus 4 r~a~~~~a~~i~~~~~~~t~~a~~~~~~~~~~~~~~~~~ 42 (168)
T PF14285_consen 4 RAAVAAAAVIILVFAASMTVQAVREKVYNFIVEWFGDYT 42 (168)
T ss_pred HHHHHHHHHHHHHHhHhEEehHHhHHHHhHHhhhcCCeE
Confidence 343444444444444444444667888887777776544
No 61
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=28.67 E-value=74 Score=25.06 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=21.2
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCC--chHHHHH-HHHHHHhhC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAHN--KPQDYLK-AHNEARASV 40 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~--~~~~il~-~hN~~R~~~ 40 (164)
|+++.+.++++++.+..+++.++. ....+|+ .++..|...
T Consensus 1 m~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~M~~A~~~ln 43 (319)
T PRK09455 1 MKQLWFAVSLLTGSLLFSANASAQPLSSGALLQQMNEASQSLN 43 (319)
T ss_pred CchHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHhCC
Confidence 887777666655444444333322 2444554 466666653
No 62
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.34 E-value=81 Score=26.48 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCCc-------hHHHHHHHHHHHhhCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSAHNK-------PQDYLKAHNEARASVG 41 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~-------~~~il~~hN~~R~~~~ 41 (164)
||+++.++++..+++++.+..+... .+++-....++..+..
T Consensus 1 Mkk~~~l~l~aall~~s~~~~a~~~~~~~~qkie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 1 MKKLISLSLAAALLFLSLPAAAMADDIDLLQKIEALKKQLEELKAQQD 48 (489)
T ss_pred CchhHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 7877777666544443332222221 2334444555555543
No 63
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.94 E-value=2.4e+02 Score=20.72 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHh
Q 036863 24 NKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQK 61 (164)
Q Consensus 24 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~ 61 (164)
.+++.+-....++|.. .+|-+|++.-+++.++
T Consensus 32 ~E~D~L~~I~~rl~~~------e~sGel~~~~~~~~~r 63 (202)
T TIGR02743 32 AEPDMLEVIEQRLKRL------EQSGELKAMQQRFQSR 63 (202)
T ss_pred cchHHHHHHHHHHHhh------hhCchHHHHHHHHHHH
Confidence 4455555556677765 7777777766665553
No 64
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.56 E-value=46 Score=22.45 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
|++++|+
T Consensus 1 MKK~ll~ 7 (126)
T PF09403_consen 1 MKKILLL 7 (126)
T ss_dssp -------
T ss_pred ChHHHHH
Confidence 8875544
No 65
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=27.56 E-value=43 Score=24.52 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=4.7
Q ss_pred CCCchHHHH
Q 036863 1 MPRTSPAIF 9 (164)
Q Consensus 1 M~~~~~~~~ 9 (164)
|+.+++++|
T Consensus 1 mk~i~~l~l 9 (216)
T PF11153_consen 1 MKKILLLLL 9 (216)
T ss_pred ChHHHHHHH
Confidence 665555443
No 66
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.46 E-value=89 Score=18.13 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=3.1
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
|...+++
T Consensus 1 MA~Kl~v 7 (65)
T PF10731_consen 1 MASKLIV 7 (65)
T ss_pred CcchhhH
Confidence 4444444
No 67
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=27.15 E-value=59 Score=21.35 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=10.2
Q ss_pred CCCchHHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALAT 16 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~ 16 (164)
|+..++.++++++++.
T Consensus 1 mKK~li~li~~ivv~~ 16 (114)
T TIGR01655 1 MKKGLAILLALIVVIT 16 (114)
T ss_pred CceehHHHHHHHHhHH
Confidence 7877777666555443
No 68
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=27.15 E-value=38 Score=19.94 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=7.8
Q ss_pred CCCchHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALA 15 (164)
Q Consensus 1 M~~~~~~~~~~l~~~ 15 (164)
||.+..+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 666655554444433
No 69
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=27.08 E-value=21 Score=20.14 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLAL 14 (164)
Q Consensus 1 M~~~~~~~~~~l~~ 14 (164)
|+..++++++++++
T Consensus 1 Mk~p~~llllvlll 14 (56)
T PF08138_consen 1 MKTPIFLLLLVLLL 14 (56)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 55555544444433
No 70
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=26.62 E-value=67 Score=25.29 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHN 34 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN 34 (164)
++++|+||+++.+-+...++..+.+.+..+
T Consensus 34 vTLLLaFFVlL~smS~vD~~k~~~i~~s~~ 63 (317)
T PRK09041 34 MTAMMAFFLVMWLLSSSTPEQLIGIAEYFR 63 (317)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 445555555555555555555566666655
No 71
>PRK10449 heat-inducible protein; Provisional
Probab=26.34 E-value=63 Score=22.00 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.3
Q ss_pred CCCchHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLAL 14 (164)
Q Consensus 1 M~~~~~~~~~~l~~ 14 (164)
||++++++++.+++
T Consensus 1 mk~~~~~~~~~~~l 14 (140)
T PRK10449 1 MKKVVALVALSLLM 14 (140)
T ss_pred ChhHHHHHHHHHHH
Confidence 88777655444443
No 72
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=26.32 E-value=54 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=16.5
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|+++++.+++++.++...+++.
T Consensus 2 mkk~~~~~~~a~~l~~l~gC~~ 23 (234)
T PRK10523 2 MKKAIITALAAAGLFTLMGCNN 23 (234)
T ss_pred chHHHHHHHHHHHHHHhhccCC
Confidence 8888888888877776666654
No 73
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=25.73 E-value=79 Score=23.45 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHNE 35 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~ 35 (164)
+.++|+||+++.+-+...++..+.+.+..+.
T Consensus 23 ~TlLlafFvlL~s~s~~d~~k~~~~~~s~~~ 53 (230)
T PRK06925 23 ITLILVFFILLFSMSQIDAQKFKAAVESFQQ 53 (230)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 3445555555555555444555666655544
No 74
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=25.38 E-value=23 Score=22.16 Aligned_cols=18 Identities=33% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIH 18 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (164)
|++.+++.+++++++.+.
T Consensus 1 Mk~~~~~~~~~~~~~~a~ 18 (93)
T PF02315_consen 1 MKTVLLAAAAAAALATAG 18 (93)
T ss_dssp ------------------
T ss_pred ChhhHHHHHHHHHHhcch
Confidence 777766665555555433
No 75
>PRK13697 cytochrome c6; Provisional
Probab=25.17 E-value=75 Score=20.25 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=8.6
Q ss_pred CCCchHHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLALA 15 (164)
Q Consensus 1 M~~~~~~~~~~l~~~ 15 (164)
|++++++.+.+++++
T Consensus 1 m~~~~~~~~~~~~~~ 15 (111)
T PRK13697 1 MKKILSLVLLGLLLL 15 (111)
T ss_pred ChhHHHHHHHHHHHH
Confidence 777766654444443
No 76
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=25.14 E-value=77 Score=26.08 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHNE 35 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~ 35 (164)
+.++|+||++..+-+....+..+.|.+..+.
T Consensus 35 vTlLMAFFlLLwsmSsvd~~k~~~ia~~F~~ 65 (421)
T PRK12799 35 MTAMMAFFLVMWLLAVSSPQELTQIAEYFRT 65 (421)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 4455555555555555555666667666554
No 77
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=25.02 E-value=54 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=9.5
Q ss_pred CCCchHHHHHHHHH
Q 036863 1 MPRTSPAIFCLLAL 14 (164)
Q Consensus 1 M~~~~~~~~~~l~~ 14 (164)
||+++.++++++..
T Consensus 1 m~~~~~~~~~~~~~ 14 (131)
T PF11948_consen 1 MKRFLALFLSVLSA 14 (131)
T ss_pred CcchHHHHHHHHHH
Confidence 88877766655554
No 78
>PRK15240 resistance to complement killing; Provisional
Probab=24.57 E-value=60 Score=23.34 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=10.9
Q ss_pred CCCchHHHHHHHHHHHh
Q 036863 1 MPRTSPAIFCLLALATI 17 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~ 17 (164)
||+.+++.++++++...
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 88888776555554444
No 79
>PRK06778 hypothetical protein; Validated
Probab=24.42 E-value=67 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHN 34 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN 34 (164)
++++|+||+++.+-+....+..+.+.+..+
T Consensus 30 ~TLLLaFFVlL~smS~vd~~k~~~~~~s~~ 59 (289)
T PRK06778 30 TLAMMALFMVLWIVNSVSKSERESIIAALH 59 (289)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 455566666666555555555566666665
No 80
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=24.19 E-value=68 Score=21.23 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=13.0
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|+..++.+++.++++....+.+
T Consensus 1 mk~~~~~~~~~~~~~~~~~a~a 22 (115)
T PRK09838 1 MKKALKVAMFSLFSVIGFNAQA 22 (115)
T ss_pred CchHHHHHHHHHHHHHhhhhhh
Confidence 6766666666666554444444
No 81
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=23.93 E-value=63 Score=25.38 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=23.3
Q ss_pred CCCchHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHh
Q 036863 1 MPRTSPAIFCLLALATIHL-SSAHNKPQDYLKAHNEARA 38 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~-~~~~~~~~~il~~hN~~R~ 38 (164)
|++.+.+.+.++.++++.+ ..-++..++++..|++--.
T Consensus 1 Mkktl~i~~ta~vliLs~C~~~~dd~edkv~qk~~~sse 39 (382)
T COG4851 1 MKKTLGIAATASVLILSGCFPFVDDTEDKVVQKEGKSSE 39 (382)
T ss_pred CchhhhHHHHHHHHHHhhccCccCCccchhhhccCCchh
Confidence 7876666666555555444 3334556778888776555
No 82
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=23.80 E-value=92 Score=23.96 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHN 34 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN 34 (164)
+.++|+||+++.+-+...++..+.+.+..+
T Consensus 25 mTLLlaFFVlL~smS~~d~~k~~~~~~s~~ 54 (281)
T PRK09038 25 ITLLFAFFVVMYAISSVNEGKYKVLSEALT 54 (281)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444555555555555555455566665554
No 83
>PRK11443 lipoprotein; Provisional
Probab=23.39 E-value=49 Score=22.21 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=5.8
Q ss_pred CCCchHHHHHHH
Q 036863 1 MPRTSPAIFCLL 12 (164)
Q Consensus 1 M~~~~~~~~~~l 12 (164)
||.+++++++++
T Consensus 1 Mk~~~~~~~~~l 12 (124)
T PRK11443 1 MKKFIAPLLALL 12 (124)
T ss_pred ChHHHHHHHHHH
Confidence 774444444443
No 84
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.17 E-value=77 Score=20.71 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=6.2
Q ss_pred CCCchHHHHH
Q 036863 1 MPRTSPAIFC 10 (164)
Q Consensus 1 M~~~~~~~~~ 10 (164)
||+.++++++
T Consensus 1 MKk~~ll~~~ 10 (114)
T PF11777_consen 1 MKKIILLASL 10 (114)
T ss_pred CchHHHHHHH
Confidence 7777666533
No 85
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.96 E-value=92 Score=19.12 Aligned_cols=15 Identities=13% Similarity=-0.119 Sum_probs=7.2
Q ss_pred chHHHHHHHHHHHhh
Q 036863 25 KPQDYLKAHNEARAS 39 (164)
Q Consensus 25 ~~~~il~~hN~~R~~ 39 (164)
.+.........+-..
T Consensus 32 ~k~~~~k~i~~yL~e 46 (85)
T PF11337_consen 32 QKHKAEKAIDWYLQE 46 (85)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555554444443
No 86
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=22.46 E-value=1e+02 Score=17.57 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=9.2
Q ss_pred CCCchHHHHHHHHHHHhh
Q 036863 1 MPRTSPAIFCLLALATIH 18 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (164)
|++.+..++++..++...
T Consensus 1 mk~~~~s~~ala~l~sLA 18 (58)
T COG5567 1 MKNVFKSLLALATLFSLA 18 (58)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 566555555544444333
No 87
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=22.18 E-value=1.2e+02 Score=17.76 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=13.7
Q ss_pred HHhhhcCCCCchHHHHHHHHHHHhhC
Q 036863 15 ATIHLSSAHNKPQDYLKAHNEARASV 40 (164)
Q Consensus 15 ~~~~~~~~~~~~~~il~~hN~~R~~~ 40 (164)
+++.+.--.+.-..+=.....+|...
T Consensus 18 lvfGp~kLP~l~r~lGk~i~~frk~~ 43 (63)
T PRK14859 18 IVFGAGKLPEIGGGLGKSIKNFKKAT 43 (63)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 33443333344455666677777654
No 88
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=21.95 E-value=1e+02 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.075 Sum_probs=11.4
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|.+.++++++++..+++.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (235)
T PRK15137 1 MYRNLSIAAVLLSAAFSGPALA 22 (235)
T ss_pred CchhHHHHHHHHHHHhhhhhhh
Confidence 6666666555555444443333
No 89
>KOG3136 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.88 E-value=1.6e+02 Score=20.85 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.2
Q ss_pred CCcccCHHHHH
Q 036863 43 GPMSWDYKLAD 53 (164)
Q Consensus 43 ~~L~Wd~~La~ 53 (164)
.|+.|+-++-.
T Consensus 42 ~pi~w~~qfl~ 52 (196)
T KOG3136|consen 42 SPIRWDIQFLE 52 (196)
T ss_pred CCcchhhhhcc
Confidence 46666665543
No 90
>PRK15058 cytochrome b562; Provisional
Probab=21.73 E-value=1.4e+02 Score=20.24 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=12.1
Q ss_pred CCCchHHHHHHHHHHHhhhcCC
Q 036863 1 MPRTSPAIFCLLALATIHLSSA 22 (164)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~ 22 (164)
|++.++.++.++++++++...+
T Consensus 1 M~k~l~~ll~~~~l~~s~~a~A 22 (128)
T PRK15058 1 MRKSLLAILAVSSLVFSSASFA 22 (128)
T ss_pred CchhHHHHHHHHHHHHhHHHHH
Confidence 6666656555555555443333
No 91
>PRK05996 motB flagellar motor protein MotB; Validated
Probab=21.42 E-value=66 Score=26.45 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Q 036863 5 SPAIFCLLALATIHLSSAHNKPQDYLKAHNEAR 37 (164)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~il~~hN~~R 37 (164)
+.++++||++..+-++..++..+.|....|=.+
T Consensus 40 mt~lm~fFl~l~~~~~~~~~~~~~~~~~f~Pik 72 (423)
T PRK05996 40 MTAMMAFFLVMWLINAANEETKAAVASYFNPIK 72 (423)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHhcCCcc
Confidence 445555555555555555566677777766544
No 92
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.09 E-value=95 Score=19.68 Aligned_cols=7 Identities=29% Similarity=0.045 Sum_probs=2.9
Q ss_pred CCCchHH
Q 036863 1 MPRTSPA 7 (164)
Q Consensus 1 M~~~~~~ 7 (164)
|++.+++
T Consensus 3 ~~~~~~l 9 (91)
T TIGR01165 3 MKKTIWL 9 (91)
T ss_pred cchhHHH
Confidence 4444433
No 93
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=20.93 E-value=1.1e+02 Score=17.43 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.8
Q ss_pred cccCHHHHHHHHHHHH
Q 036863 45 MSWDYKLADYSHKHAQ 60 (164)
Q Consensus 45 L~Wd~~La~~Aq~~a~ 60 (164)
|+|..+-++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999887
No 94
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=20.82 E-value=1.6e+02 Score=16.22 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHH
Q 036863 24 NKPQDYLKAHNEAR 37 (164)
Q Consensus 24 ~~~~~il~~hN~~R 37 (164)
.+|+.+|+.-|++=
T Consensus 31 qdrdallear~kl~ 44 (54)
T PF13260_consen 31 QDRDALLEARNKLF 44 (54)
T ss_pred hhHHHHHHHHHHHH
Confidence 67888999888763
No 95
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=20.61 E-value=1e+02 Score=18.76 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=5.2
Q ss_pred CCCchHHHH
Q 036863 1 MPRTSPAIF 9 (164)
Q Consensus 1 M~~~~~~~~ 9 (164)
|+.++++++
T Consensus 1 ~kn~~l~~~ 9 (74)
T PF02553_consen 1 MKNLLLLLL 9 (74)
T ss_pred CceeHHHHH
Confidence 566655544
Done!