Query 036864
Match_columns 563
No_of_seqs 151 out of 1205
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 8E-102 2E-106 816.4 25.9 499 20-547 172-736 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1.1E-97 2E-102 823.2 40.0 490 24-539 130-679 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 1.2E-82 2.6E-87 714.6 45.6 491 24-534 101-623 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 2.2E-78 4.7E-83 681.6 32.8 483 25-532 120-649 (654)
5 TIGR00733 putative oligopeptid 100.0 1.3E-64 2.8E-69 556.2 40.8 468 23-535 88-590 (591)
6 COG1297 Predicted membrane pro 100.0 5E-48 1.1E-52 406.1 30.1 471 25-538 104-617 (624)
7 TIGR00733 putative oligopeptid 93.4 9.3 0.0002 43.3 20.7 150 370-532 88-266 (591)
8 PF03169 OPT: OPT oligopeptide 84.5 49 0.0011 37.8 18.0 28 474-501 217-244 (624)
9 TIGR00728 OPT_sfam oligopeptid 42.6 4.6E+02 0.01 30.2 14.2 27 475-501 232-258 (654)
10 COG1297 Predicted membrane pro 35.2 3.6E+02 0.0078 30.5 11.0 128 362-501 94-234 (624)
11 PF11449 DUF2899: Protein of u 34.1 89 0.0019 32.2 5.9 27 370-396 271-297 (298)
12 KOG0224 Aquaporin (major intri 33.3 71 0.0015 32.8 4.9 52 370-421 105-170 (316)
13 TIGR00814 stp serine transport 30.6 7E+02 0.015 26.8 12.8 61 271-331 16-79 (397)
14 PF14715 FixP_N: N-terminal do 24.6 1.4E+02 0.0031 22.2 4.0 19 257-276 18-36 (51)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-102 Score=816.39 Aligned_cols=499 Identities=18% Similarity=0.239 Sum_probs=448.7
Q ss_pred ceeccC--hhHHHHHHHHHHHHhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCCCCchhh-hHHHHHHHHHHHHHH
Q 036864 20 NIKSLS--IGWMMAFLFAVSFLGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTPKGAQLA-KKQVAMLFRSFGFSF 96 (563)
Q Consensus 20 ~~~~~~--~~~~~~~~~~~~llG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~~~~~~a-~~~~~~f~~~f~~~f 96 (563)
.||+.+ +++.+++.+++|++|||+||++||++|+|.+|.||+++.+++|+|+||++|+++++ .+|+|||.++|.++|
T Consensus 172 ~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SF 251 (761)
T KOG2262|consen 172 AFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASF 251 (761)
T ss_pred HHHhccccHHHHHHHHHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHH
Confidence 366664 56778889999999999999999999999999999999999999999997655444 899999999999999
Q ss_pred HHHHH-HHHHhccc----cccccccc-----------cccccccCCcceecccc--cccccccccchHHHHHHHHHHHHH
Q 036864 97 VWAFF-QWFYTAGD----GCGFSSFP-----------TFGLKAFKQKFFFDFSS--TYVGVGMICPYMVNISLLIGAVLS 158 (563)
Q Consensus 97 ~~~~~-~~i~~~l~----~~~~~~~~-----------~~G~~~~~~~~~~dws~--~~~G~g~i~p~~~~~~~~~G~vl~ 158 (563)
+|+|| +|+||.++ +||+.+.+ ++|+. ++++||++ +++|+|+.+|+++.+|.++|.++.
T Consensus 252 iyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~~GLGi~----~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~ 327 (761)
T KOG2262|consen 252 IYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGLTGLGIG----PFTLDWSQISSYLGSPLASPFFAIANVFLGFVLF 327 (761)
T ss_pred HHHHhhHHHHHHHhhhheeeEeccccHHHHHhcccccccccc----cccccHHHHHHHcCCcchhhHHHHHHHhhhhhhh
Confidence 99999 79999873 79998742 45555 78999998 489999999999999999999999
Q ss_pred HHHHHHHhhhhcCcccCCCCCC--CCccccc-------------------hhH----HHHHHHHHHHHH--HHHHHHHHH
Q 036864 159 WGIMWPIIETKKGIWYKAELSD--SNLHGMN-------------------GYR----VFIAIAMMLGDG--IYHVVYMIV 211 (563)
Q Consensus 159 ~~ii~P~~~~~~n~w~~~~~p~--~~~~~~~-------------------~y~----~~~~~~~~~~~g--~~~l~~~~~ 211 (563)
.+|+.|++|+ +|.|...++|+ |+.+|.+ .|+ +|+++...+++| +..+++.+.
T Consensus 328 ~~IV~Pi~Y~-~n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~ 406 (761)
T KOG2262|consen 328 IYIVLPILYW-TNTYDAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIV 406 (761)
T ss_pred hhhhhhhHhh-ccceecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhh
Confidence 9999999975 79999999996 3344332 354 799999999988 778888888
Q ss_pred HHHH----HHHHHHhhccccccccccccCCCCccccccccchhccccccCCchhHHHHHHHHHHHHHHHHHhccccc--c
Q 036864 212 TTSL----SLVQQYSSRRKANSTVSSEVGNESSQIVNFDDQRRTEFFLKDQIPNWVAVSGYILLAVVAIIAVPFIFH--Q 285 (563)
Q Consensus 212 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~m~~y~~vP~ww~~~~l~v~~~l~i~~~~~~~~--~ 285 (563)
|.+. +++++.+... +..+|+|.|+|++|||||+|||++.+++++++++++++++.+ |
T Consensus 407 Hv~Lf~gkdiw~~~~~~~-----------------~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q 469 (761)
T KOG2262|consen 407 HVALFNGKDIWQQTKKAF-----------------NKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQ 469 (761)
T ss_pred hheeeccHHHHHHHHhcc-----------------ccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeeccccc
Confidence 7643 3444433221 345799999999999999999999999999999999999988 8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCCccccchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036864 286 LKWYHILVAFSFAPILAFCNAYGCGLTDWSLASNYGKFAIIIFSSWVGLEHGGIIAGLASCGVMMSTVSTASDLMQDFKT 365 (563)
Q Consensus 286 lp~~~~~vai~l~~i~~~~~~~~~g~Tg~~p~~~~~~i~qli~g~~~~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~ 365 (563)
+|||++++|+++++++.+|.+.+.|+||++|++| +++|+|.||+. ||+|+|||.||.|++.+..||..++||+|+
T Consensus 470 ~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLN--iitE~i~Gy~~---PgrPiAn~~FK~yGyism~Qal~f~~DlKl 544 (761)
T KOG2262|consen 470 LPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLN--IITEYIIGYIY---PGRPIANLCFKTYGYISMTQALTFLQDLKL 544 (761)
T ss_pred CchHHHHHHHHHHHHHhccHHHhhhhccCCccHH--HHHHHHHHhhc---CCchHHHHHHHHhchhhHHHHHHHHhhccc
Confidence 9999999999999999999999999999999998 99999999999 999999999999999999999999999999
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHhhHHHHH-HHHHccCCCCC--CCCCCCCCchhHHHHHHHH-hccCCCCCchh---hH
Q 036864 366 GYLTLSSPRSMFFSQVFGTFLGVVLSPLVF-WFFYNAYPIGD--PEGTYPSPYGLLYRGIAIL-GVEGVSSLPKH---CL 438 (563)
Q Consensus 366 G~y~~~pPr~~f~~QiiG~ivga~v~~~v~-~ll~~~~~i~~--~~~~~~~P~a~~~~s~a~~-g~~G~~~l~~~---~~ 438 (563)
|||||+|||.||.+|++||+++++|+.+|. |++.+..++|| ++++||||..++++++|++ |++||+|+|++ |.
T Consensus 545 ghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~ 624 (761)
T KOG2262|consen 545 GHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYP 624 (761)
T ss_pred eeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccC
Confidence 999999999999999999999999999998 67778899997 4578999999999999999 99999999985 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhcc----cccchhhhhHHHHHHHHHHHHHHHhcCcccchhhhH
Q 036864 439 TLAIAFFAAAIVLNIIREVLQHVDAKCKIYRFIPSPMCMA----IPFYLGGYFAIDMCVGSLILFVWEMKDKRSAADFAP 514 (563)
Q Consensus 439 ~~~~~~~~iG~~l~i~~~l~~~~~p~~~~~~~i~~p~~~~----l~~~~~~~~~~~~~iG~~~~~~~~r~~~~~~~~y~~ 514 (563)
. +.|+|++|++.|++.|+++|++||.+|.+++|.|+.++ +|++++.+|++|+.+|.++++++|||++.||+||||
T Consensus 625 ~-l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNy 703 (761)
T KOG2262|consen 625 G-LNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNY 703 (761)
T ss_pred c-chHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 56999999999999999999999999999999999987 677778899999999999999999999999999999
Q ss_pred HHHHhHHhhhHhHHHHHH-HHHhCCCCCCceeee
Q 036864 515 AVASGLICGDSLWSVPAA-ILSLANLNAPICMKF 547 (563)
Q Consensus 515 ~laaGL~aG~al~gviia-~l~~~g~~~~~~~~~ 547 (563)
++|||||+|.+++|++++ +++..|++.+ ||+=
T Consensus 704 vLsaaldaG~a~~~vliffcv~~~~~~~~-WWGn 736 (761)
T KOG2262|consen 704 VLSAALDAGVAFMGVLIFFCVQYPGISLN-WWGN 736 (761)
T ss_pred HhhhhcccchhHHHhHhhheeccCCCccc-cccC
Confidence 999999999999999999 8999999988 8863
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.1e-97 Score=823.18 Aligned_cols=490 Identities=17% Similarity=0.253 Sum_probs=437.1
Q ss_pred cChhHHHHHHHHHHHHhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCCCCchhh---hHHHHHHHHHHHHHHHHHH
Q 036864 24 LSIGWMMAFLFAVSFLGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTPKGAQLA---KKQVAMLFRSFGFSFVWAF 100 (563)
Q Consensus 24 ~~~~~~~~~~~~~~llG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~~~~~~a---~~~~~~f~~~f~~~f~~~~ 100 (563)
.++++++++++++|++|+++|+++||++|+|++|+||+++++++|+|+||++++++.+ ++|+|+|+++|+++|+|+|
T Consensus 130 ~~~g~~il~~lstq~~G~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w 209 (681)
T TIGR00727 130 FGFGYQFLLSLSTQFIGFGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNW 209 (681)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999986543322 5899999999999999999
Q ss_pred H-HHHHhccc----cccccccc-----------cccccccCCc-ceeccccc--ccccccccchHHHHHHHHHHHHHHHH
Q 036864 101 F-QWFYTAGD----GCGFSSFP-----------TFGLKAFKQK-FFFDFSST--YVGVGMICPYMVNISLLIGAVLSWGI 161 (563)
Q Consensus 101 ~-~~i~~~l~----~~~~~~~~-----------~~G~~~~~~~-~~~dws~~--~~G~g~i~p~~~~~~~~~G~vl~~~i 161 (563)
+ +|+||.++ +||+++.+ ++|+. + +|||||+. +.|+|+++|+++++|.++|.++++++
T Consensus 210 ~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~~~GlGl~----p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~i 285 (681)
T TIGR00727 210 FPTYIFQALSTFNWMTWIKPNNINLNQIFGGSTGLGIN----PISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWI 285 (681)
T ss_pred HHHHHHHHhhhchhhhhccCcchhhhhhhccccCCCcC----CcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 9 78999874 79998743 34444 6 89999985 48999999999999999999999999
Q ss_pred HHHHhhhhcCcccCCCCCCCC--ccccch-------------------hH----HHHHHHHHHHHH--HHHHHHHHHHHH
Q 036864 162 MWPIIETKKGIWYKAELSDSN--LHGMNG-------------------YR----VFIAIAMMLGDG--IYHVVYMIVTTS 214 (563)
Q Consensus 162 i~P~~~~~~n~w~~~~~p~~~--~~~~~~-------------------y~----~~~~~~~~~~~g--~~~l~~~~~~~~ 214 (563)
+.|++|| +|.|+++++|+++ .+|++| |+ +|++++..+.+| +..+++.+.+++
T Consensus 286 i~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~ 364 (681)
T TIGR00727 286 VIPAVYY-SNTWYCQYLPISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSI 364 (681)
T ss_pred HHHHHHH-cccccccccCCccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999975 9999999999753 444432 55 799999999988 477788888887
Q ss_pred HHHHHHHhhccccccccccccCCCCccccccccchhccccccCCchhHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Q 036864 215 LSLVQQYSSRRKANSTVSSEVGNESSQIVNFDDQRRTEFFLKDQIPNWVAVSGYILLAVVAIIAVPFIFHQLKWYHILVA 294 (563)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~m~~y~~vP~ww~~~~l~v~~~l~i~~~~~~~~~lp~~~~~va 294 (563)
...+++++++.+ +++++|+|.|+|++|+|||+|||++++++++++++++++.+++++|||++++|
T Consensus 365 l~~~~~i~~~~~---------------~~~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~la 429 (681)
T TIGR00727 365 IVHGKLLFNALK---------------DDDYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVC 429 (681)
T ss_pred HHhhHHHHHHHh---------------cCCCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 777777664432 13458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCccccchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChh
Q 036864 295 FSFAPILAFCNAYGCGLTDWSLASNYGKFAIIIFSSWVGLEHGGIIAGLASCGVMMSTVSTASDLMQDFKTGYLTLSSPR 374 (563)
Q Consensus 295 i~l~~i~~~~~~~~~g~Tg~~p~~~~~~i~qli~g~~~~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr 374 (563)
+++++++.+|.++++|+||+++..| +++|+|+|+++ ||||+|||+++++++++.+||.+++||||+|||+|+|||
T Consensus 430 l~l~~i~~iP~~~i~a~t~~~~~ln--~l~eli~Gy~~---PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR 504 (681)
T TIGR00727 430 LIFNFVFLIPTTILQATTNISFGLN--VLTEFIVGYAL---PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPR 504 (681)
T ss_pred HHHHHHHHHhhhheEeecCCccchh--HHHHHHhhhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcH
Confidence 9999999999999999999998877 99999999999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHHHHH-HHHHccCCCCCC--CCCCCCCchhHHHHHHHH-hccCCCCCchh--hHHHHHHHHHHH
Q 036864 375 SMFFSQVFGTFLGVVLSPLVF-WFFYNAYPIGDP--EGTYPSPYGLLYRGIAIL-GVEGVSSLPKH--CLTLAIAFFAAA 448 (563)
Q Consensus 375 ~~f~~QiiG~ivga~v~~~v~-~ll~~~~~i~~~--~~~~~~P~a~~~~s~a~~-g~~G~~~l~~~--~~~~~~~~~~iG 448 (563)
+||++|++|+++|++++++++ +++.+..|+||+ +++|+||++++++++|++ |++||+|+|++ -+..+.+++++|
T Consensus 505 ~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliG 584 (681)
T TIGR00727 505 ALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIG 584 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHH
Confidence 999999999999999999999 677888999985 479999999999999999 99999999973 234566999999
Q ss_pred HHHHHHHHHhhhccccccccccccchhhccc----ccchhhhhHHHHHHHHHHHHHHHhcCcccchhhhHHHHHhHHhhh
Q 036864 449 IVLNIIREVLQHVDAKCKIYRFIPSPMCMAI----PFYLGGYFAIDMCVGSLILFVWEMKDKRSAADFAPAVASGLICGD 524 (563)
Q Consensus 449 ~~l~i~~~l~~~~~p~~~~~~~i~~p~~~~l----~~~~~~~~~~~~~iG~~~~~~~~r~~~~~~~~y~~~laaGL~aG~ 524 (563)
+++|++.|+++|++||+ +.|++|.|++++. ++..|.+++++..+|.++++++|||+++||+||||+++||||+|+
T Consensus 585 a~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~ 663 (681)
T TIGR00727 585 ACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGL 663 (681)
T ss_pred HHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999984 6789999998874 344556788899999999999999999999999999999999999
Q ss_pred HhHHHHHH-HHHhCCC
Q 036864 525 SLWSVPAA-ILSLANL 539 (563)
Q Consensus 525 al~gviia-~l~~~g~ 539 (563)
++++++++ ++++.++
T Consensus 664 a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 664 VLSAIIIFFCLQLKDT 679 (681)
T ss_pred HHHHhHheeEEEeCCC
Confidence 99999998 6666554
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.2e-82 Score=714.59 Aligned_cols=491 Identities=27% Similarity=0.427 Sum_probs=412.3
Q ss_pred cChhHHHHHHHHHHHHhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHHHH-H
Q 036864 24 LSIGWMMAFLFAVSFLGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTPKGAQLAKKQVAMLFRSFGFSFVWAFF-Q 102 (563)
Q Consensus 24 ~~~~~~~~~~~~~~llG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~~~~~~a~~~~~~f~~~f~~~f~~~~~-~ 102 (563)
.++++.+++++++|++|+++|+|+||++|+|++|+||+++|+++++++||++++.+++++|+|+|+++|.++++|+++ .
T Consensus 101 ~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 180 (624)
T PF03169_consen 101 FSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQ 180 (624)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999999999999999999999999999999765577899999999999999999998 6
Q ss_pred HHHhccc----cccccccccccccc-cCCcceecccccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCC
Q 036864 103 WFYTAGD----GCGFSSFPTFGLKA-FKQKFFFDFSSTYVGVGMICPYMVNISLLIGAVLSWGIMWPIIETKKGIWYKAE 177 (563)
Q Consensus 103 ~i~~~l~----~~~~~~~~~~G~~~-~~~~~~~dws~~~~G~g~i~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~ 177 (563)
|++|.+. .||+.+....+... .++.++||||++++|+|+++|+++++|+++|++++|+++.|++++.+|.|.+.+
T Consensus 181 ~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~ 260 (624)
T PF03169_consen 181 YIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAY 260 (624)
T ss_pred HHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCcc
Confidence 7888763 69988754433222 233699999999999999999999999999999999999999986558998888
Q ss_pred CCCCC--cccc-------chhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhccccccccccccCCCC
Q 036864 178 LSDSN--LHGM-------NGYRVFIAIAMMLGDGIYHV---------VYMIVTTSLSLVQQYSSRRKANSTVSSEVGNES 239 (563)
Q Consensus 178 ~p~~~--~~~~-------~~y~~~~~~~~~~~~g~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (563)
+|+++ .+|. ..|..|.+.+.+...+.+.+ .+.+.+.+...+++.+...++.. ++.+
T Consensus 261 ~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~ 334 (624)
T PF03169_consen 261 LPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSK------SSQR 334 (624)
T ss_pred ccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhc------cccc
Confidence 88532 2332 24778999999988886655 33444444444444432211100 0112
Q ss_pred ccccccccchhccccccCCchhHHHHHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Q 036864 240 SQIVNFDDQRRTEFFLKDQIPNWVAVSGYILLAVVAIIAVPFIF--HQLKWYHILVAFSFAPILAFCNAYGCGLTDWSLA 317 (563)
Q Consensus 240 ~~~~~~~d~~~~~m~~y~~vP~ww~~~~l~v~~~l~i~~~~~~~--~~lp~~~~~vai~l~~i~~~~~~~~~g~Tg~~p~ 317 (563)
+.++++||+|+++|++|+|+|+|||+.++++++++++++++.++ +++|+|+.++++++++++++|.++++|+||+||.
T Consensus 335 ~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~ 414 (624)
T PF03169_consen 335 SSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPV 414 (624)
T ss_pred ccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 33456689999999999999999999999999999999999998 7899999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhhHHHHHHHHHHHHHhhHHHHHHH
Q 036864 318 SNYGKFAIIIFSSWVGLEHGGIIAGLASCGVMMSTVSTASDLMQDFKTGYLTLSSPRSMFFSQVFGTFLGVVLSPLVFWF 397 (563)
Q Consensus 318 ~~~~~i~qli~g~~~~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QiiG~ivga~v~~~v~~l 397 (563)
+.+++++|+++|+++ |+++++||+++++++++++||.|++||||+|||+|+|||+||++|++|+++|++++++++++
T Consensus 415 ~~~~~~sqli~g~~~---pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l 491 (624)
T PF03169_consen 415 SGLNILSQLIFGLLL---PGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRL 491 (624)
T ss_pred hhhhHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCC-CCCCCCCchhHHHHHHHH-hccCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccchh
Q 036864 398 FYNAYPIGDP-EGTYPSPYGLLYRGIAIL-GVEGVSSLPKHCLTLAIAFFAAAIVLNIIREVLQHVDAKCKIYRFIPSPM 475 (563)
Q Consensus 398 l~~~~~i~~~-~~~~~~P~a~~~~s~a~~-g~~G~~~l~~~~~~~~~~~~~iG~~l~i~~~l~~~~~p~~~~~~~i~~p~ 475 (563)
+.+.|.+.++ +++++||..++....++. ++.||++ ...|. ...+++++|++++++.++.+|+.| .++
T Consensus 492 ~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~-~~~~~-~~~~~~~~G~~~~i~~~l~~~~~P---------~~~ 560 (624)
T PF03169_consen 492 LNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQR-GLPYS-ALPWGFLIGAVLPILFWLLQRKFP---------SPL 560 (624)
T ss_pred HHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcc-cchHH-HHHHHHHHHHHHHHHHHHHHhhCC---------hhh
Confidence 9666665422 124555555555455555 7788754 22233 456899999999999999877655 457
Q ss_pred hcc----cccchhhhhHHHHHHHHHHHHHHHhcCcccchhhhHHHHHhHHhhhHhHHHHHHHH
Q 036864 476 CMA----IPFYLGGYFAIDMCVGSLILFVWEMKDKRSAADFAPAVASGLICGDSLWSVPAAIL 534 (563)
Q Consensus 476 ~~~----l~~~~~~~~~~~~~iG~~~~~~~~r~~~~~~~~y~~~laaGL~aG~al~gviia~l 534 (563)
+++ +++++|.+++.++++|+++++++|||+++||+||||++|||||+||+|+|++++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 561 AFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred eeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 788 99999999999999999999999999999999999999999999999999999864
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.2e-78 Score=681.61 Aligned_cols=483 Identities=25% Similarity=0.446 Sum_probs=376.6
Q ss_pred ChhHHHHHHHHHHH--HhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCC----CCchhhhHHHHHHHHHHHHHHHH
Q 036864 25 SIGWMMAFLFAVSF--LGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTP----KGAQLAKKQVAMLFRSFGFSFVW 98 (563)
Q Consensus 25 ~~~~~~~~~~~~~l--lG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~----~~~~~a~~~~~~f~~~f~~~f~~ 98 (563)
+.++.+++++++|+ +|+++|+|+||++|+|++|+||+++|+++++++||++ ++.+.+|..+..+...|..++.|
T Consensus 120 ~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~ 199 (654)
T TIGR00728 120 SWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLW 199 (654)
T ss_pred CHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHH
Confidence 56666667777666 9999999999999999999999999999999998653 22222332234455678888899
Q ss_pred HHHHHHHhcccccccccccccc-ccccCCcceecccc--cccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcCcccC
Q 036864 99 AFFQWFYTAGDGCGFSSFPTFG-LKAFKQKFFFDFSS--TYVGVGMICPYMVNISLLIGAVLSWGIMWPIIETKKGIWYK 175 (563)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~~~G-~~~~~~~~~~dws~--~~~G~g~i~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~ 175 (563)
+++.|++|.. ...+.+| +... +++|||++ +++|+|+++|+++++|+++|++++|+++.|+++| +|.|.+
T Consensus 200 ~~~~~~~p~~-----~~~~~fgglg~~--~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~ 271 (654)
T TIGR00728 200 SFVSWFFPGF-----TAFQTFGGLGSG--SIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPA 271 (654)
T ss_pred HHHHHHhcCC-----cccccccccccc--ccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcccc
Confidence 9998888763 1223333 2111 56777775 5789999999999999999999999999999975 788877
Q ss_pred CCCCCCCccccchhH-HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhhcccccc
Q 036864 176 AELSDSNLHGMNGYR-VFIAIAMMLGDGI-------------------------YHVVYMIVTTSLSLVQQYSSRRKANS 229 (563)
Q Consensus 176 ~~~p~~~~~~~~~y~-~~~~~~~~~~~g~-------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (563)
+++|+++....++|. +|.+++.+++++. ..+...+.+.....+++..+..++..
T Consensus 272 ~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 351 (654)
T TIGR00728 272 DADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHY 351 (654)
T ss_pred ccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 777764432222222 2444444443332 22222233332222111111110000
Q ss_pred ccccccCCCC-ccccccccchhccccccCCchhHHHHHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHHhh
Q 036864 230 TVSSEVGNES-SQIVNFDDQRRTEFFLKDQIPNWVAVSGYILLAVVAIIAVPFIF--HQLKWYHILVAFSFAPILAFCNA 306 (563)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~d~~~~~m~~y~~vP~ww~~~~l~v~~~l~i~~~~~~~--~~lp~~~~~vai~l~~i~~~~~~ 306 (563)
.-+ +|.+ +..++++|+ +|++|+|+|+|||+.++++++++++++++.++ +++|||++++++++++++++|.+
T Consensus 352 ~~~---~~~~~~~~~~~~d~---~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~ 425 (654)
T TIGR00728 352 KLG---RDDHVRLLSRDEDL---KVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIG 425 (654)
T ss_pred hcc---CCCChHHHhhcccc---cccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhh
Confidence 000 0000 000011122 26778999999999999999999998888776 78999999999999999999999
Q ss_pred hhhhccCCccccchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhhHHHHHHHHHHH
Q 036864 307 YGCGLTDWSLASNYGKFAIIIFSSWVGLEHGGIIAGLASCGVMMSTVSTASDLMQDFKTGYLTLSSPRSMFFSQVFGTFL 386 (563)
Q Consensus 307 ~~~g~Tg~~p~~~~~~i~qli~g~~~~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QiiG~iv 386 (563)
+++|+| +|.+++++++|+++|+++ ||+|++||+++++++++++||+|++||||+|||+|+|||+||++|++|+++
T Consensus 426 ~~~g~t--np~~~l~~~~~li~g~~~---pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~v 500 (654)
T TIGR00728 426 ILAGIT--NPVSGLNIITELIIGYIL---PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIV 500 (654)
T ss_pred heEEee--cccchhhHHHHHhheeec---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 999999 666667799999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHccCCCCCCCCCCCCCchhHHHHHHHH-hccCCCCCchh--hHHHHHHHHHHHHHHHHHHHHhhhccc
Q 036864 387 GVVLSPLVFWFFYNAYPIGDPEGTYPSPYGLLYRGIAIL-GVEGVSSLPKH--CLTLAIAFFAAAIVLNIIREVLQHVDA 463 (563)
Q Consensus 387 ga~v~~~v~~ll~~~~~i~~~~~~~~~P~a~~~~s~a~~-g~~G~~~l~~~--~~~~~~~~~~iG~~l~i~~~l~~~~~p 463 (563)
|+++++++++++.++++.. +++|+||+++.|+++|++ +++||+ +++. .+....+++++| +++++.++.+|++|
T Consensus 501 g~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p 576 (654)
T TIGR00728 501 GSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFP 576 (654)
T ss_pred HHHHHHHHHHHHHhccCCC--CCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 9999999999999998864 578999999999999988 889988 8863 234456899999 79999999999888
Q ss_pred cccccccccchhhcccccchhhhhHHHHH----HHHHHHHHHHhcCcccc--hhhhHHHHHhHHhhhHhHHHHHH
Q 036864 464 KCKIYRFIPSPMCMAIPFYLGGYFAIDMC----VGSLILFVWEMKDKRSA--ADFAPAVASGLICGDSLWSVPAA 532 (563)
Q Consensus 464 ~~~~~~~i~~p~~~~l~~~~~~~~~~~~~----iG~~~~~~~~r~~~~~~--~~y~~~laaGL~aG~al~gviia 532 (563)
| +++|+|+|+++++++++|++++..++ +|++++++||||+++|| +||||++|||||+||+|+|++++
T Consensus 577 ~--~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviif 649 (654)
T TIGR00728 577 K--WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIF 649 (654)
T ss_pred c--hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Confidence 6 67899999999999999988777777 99999999999988876 99999999999999999999987
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1.3e-64 Score=556.20 Aligned_cols=468 Identities=20% Similarity=0.296 Sum_probs=356.2
Q ss_pred ccChhHHHHHHHHHHHHhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 036864 23 SLSIGWMMAFLFAVSFLGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTPKGAQLAKKQVAMLFRSFGFSFVWAFFQ 102 (563)
Q Consensus 23 ~~~~~~~~~~~~~~~llG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~~~~~~a~~~~~~f~~~f~~~f~~~~~~ 102 (563)
+.++++.+.++++.+++|+.|++||||++|+++||+|||++|||+++++.+ ++ + ++++.|.+...+..+.+|.++.
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g~--~g-~-~~~~~~~l~~g~~~s~~~~~~~ 163 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAGD--KA-R-NGTGAKPIAYGGILASIYAFLG 163 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHccc--cc-c-chhhHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999852 22 1 3456778888888999998883
Q ss_pred HH--HhccccccccccccccccccCCcceecccccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCCCC
Q 036864 103 WF--YTAGDGCGFSSFPTFGLKAFKQKFFFDFSSTYVGVGMICPYMVNISLLIGAVLSWGIMWPIIETKKGIWYKAELSD 180 (563)
Q Consensus 103 ~i--~~~l~~~~~~~~~~~G~~~~~~~~~~dws~~~~G~g~i~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~ 180 (563)
.+ +|...-.|. ..|.. ...+++||||+++|.||++|+++++++++|++++|+++.|++.. +.|.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~----~~g~~--~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~~ 235 (591)
T TIGR00733 164 SLRVWSGTLSAAK----LVGRR--ALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTA--KMGSPGDLSA 235 (591)
T ss_pred HhccCCchHHHHH----hcCCc--ceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccH
Confidence 11 111000000 01211 12577899999999999999999999999999999999999853 4576654442
Q ss_pred CCc-cccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCccccccccchhccccccCC
Q 036864 181 SNL-HGMN-GYRVFIAIAMMLGDGIYHVVYMIVTTSLSLVQQYSSRRKANSTVSSEVGNESSQIVNFDDQRRTEFFLKDQ 258 (563)
Q Consensus 181 ~~~-~~~~-~y~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~m~~y~~ 258 (563)
.+. ...| .|.+|+|+++|+++|++++.+..++.++.+++..+..++ +++ .+|..|+ .+|
T Consensus 236 ~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~r~----~~d 296 (591)
T TIGR00733 236 LDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARR-------------RQA--GEAVLRT----EED 296 (591)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------ccc--ccccccc----ccc
Confidence 211 1122 244779999999999999999888887777776654321 111 1123333 368
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccch--------H-HHHHHHHHHHHHHHHHhhhhhhc--cCCccccchhHHHHHH
Q 036864 259 IPNWVAVSGYILLAVVAIIAVPFIFHQLK--------W-YHILVAFSFAPILAFCNAYGCGL--TDWSLASNYGKFAIII 327 (563)
Q Consensus 259 vP~ww~~~~l~v~~~l~i~~~~~~~~~lp--------~-~~~~vai~l~~i~~~~~~~~~g~--Tg~~p~~~~~~i~qli 327 (563)
+|.|+...+++ ..++. +.+...+.| + ...+++++++++++..++|+.|+ ||.||.+.+++++|++
T Consensus 297 ip~~~v~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~ 372 (591)
T TIGR00733 297 LPINIVLTLVA-LFVIP---LADFLLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLF 372 (591)
T ss_pred ccHHHHHHHHH-HHHHH---HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH
Confidence 99986543322 21222 211112323 2 45677788888888888999999 8889999999999999
Q ss_pred HHHHh--------cC-CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhhHHHHHHHHHHHHHhhHHHHHHHH
Q 036864 328 FSSWV--------GL-EHGGIIAGLASCGVMMSTVSTASDLMQDFKTGYLTLSSPRSMFFSQVFGTFLGVVLSPLVFWFF 398 (563)
Q Consensus 328 ~g~~~--------~~-~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QiiG~ivga~v~~~v~~ll 398 (563)
++.+. +. .|+...+|++.+++++.+++||+|++||||+||++|++||+||++|++|+++|+++++++++++
T Consensus 373 ~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll 452 (591)
T TIGR00733 373 TALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLL 452 (591)
T ss_pred HHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 21 1577899999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCC-----CCCCCCCCchhHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 036864 399 YNAYPIGD-----PEGTYPSPYGLLYRGIAILGVEGVSSLPKHCLTLAIAFFAAAIVLNIIREVLQHVDAKCKIYRFIPS 473 (563)
Q Consensus 399 ~~~~~i~~-----~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~~~iG~~l~i~~~l~~~~~p~~~~~~~i~~ 473 (563)
.++|++.+ |+++|++|||.+|++++ .|+..+ .+++. ...++.++|+++.++++.++|+ ++++-.+
T Consensus 453 ~~ayg~~~~~~~~~~~~l~APqA~l~~ava-~gi~~~-~l~~~---~i~~ga~~g~~l~~~~~~~~~~-----~~~~~~p 522 (591)
T TIGR00733 453 IKAYGIAGTPTAKGENALPAPQAFLMAAVT-EGVFTG-TLEWT---MVFIGAGIGIALIIIDEILAKR-----GSKFRTP 522 (591)
T ss_pred HHHhcccccccCCCccccCCCHHHHHHHHH-hhhcCC-CccHH---HHHHHHHHHHHHHHHHHHhhhc-----ccccCCc
Confidence 99998753 46789999999999997 343332 34432 2345567777888888777653 2333346
Q ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHhcCccc------chhhhHHHHHhHHhhhHhHHHHHHHHH
Q 036864 474 PMCMAIPFYLGGYFAIDMCVGSLILFVWEMKDKRS------AADFAPAVASGLICGDSLWSVPAAILS 535 (563)
Q Consensus 474 p~~~~l~~~~~~~~~~~~~iG~~~~~~~~r~~~~~------~~~y~~~laaGL~aG~al~gviia~l~ 535 (563)
++++++++|+|.+++.++++|++++|+||||+++. .+++++++||||++||+|+|++++++.
T Consensus 523 ~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 523 VMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAII 590 (591)
T ss_pred hhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHHh
Confidence 78999999999999999999999999999975432 146789999999999999999998753
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5e-48 Score=406.05 Aligned_cols=471 Identities=22% Similarity=0.321 Sum_probs=329.7
Q ss_pred ChhHHHHHHHHHHHHhHHHHHhhccceeecCCCCCCchHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036864 25 SIGWMMAFLFAVSFLGLFSIVPLRKVMILKYKLTYPSGTATAYLINSFHTPKGAQLAKKQVAMLFRSFGFSFVWAFFQWF 104 (563)
Q Consensus 25 ~~~~~~~~~~~~~llG~~~A~~lRr~lV~~~~l~fP~~la~a~li~alH~~~~~~~a~~~~~~f~~~f~~~f~~~~~~~i 104 (563)
++.+...++...+++|+.|++||||.+|.++|||||||.|+|+++++..++|++. +-.+-..+....+.+|.++.--
T Consensus 104 pf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g 180 (624)
T COG1297 104 PFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASG 180 (624)
T ss_pred cHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhcc
Confidence 3455566677789999999999999999999999999999999999987544432 2223334455556666665210
Q ss_pred Hhc---cccccccccccccccccCCcceecccccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCCCCC
Q 036864 105 YTA---GDGCGFSSFPTFGLKAFKQKFFFDFSSTYVGVGMICPYMVNISLLIGAVLSWGIMWPIIETKKGIWYKAELSDS 181 (563)
Q Consensus 105 ~~~---l~~~~~~~~~~~G~~~~~~~~~~dws~~~~G~g~i~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~ 181 (563)
+.. ..-.|+. .|.... .+..+.|++++|.|+++|..+.+-++.|..++|++.+|++.+ +.|.|++....
T Consensus 181 ~~~~~~~~~~~~~----~~~~~~--~lg~~~S~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~ 252 (624)
T COG1297 181 LRVIASSLSAAFS----VGRAAF--ALGLGLSLALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAG 252 (624)
T ss_pred ceeehhhHHHHHH----hcchhh--hhcccccHHHhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHH
Confidence 100 0001111 111111 356788999999999999999999999999999999999743 34443321100
Q ss_pred -Cccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCccccccccchhccccccCCc
Q 036864 182 -NLHGMN-GYRVFIAIAMMLGDGIYHVVYMIVTTSLSLVQQYSSRRKANSTVSSEVGNESSQIVNFDDQRRTEFFLKDQI 259 (563)
Q Consensus 182 -~~~~~~-~y~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~m~~y~~v 259 (563)
+....| .+.+|+++|.+...+++++.+...++.+..++.++..+.+ + +..+..|+| +|+
T Consensus 253 ~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~~~r~~------------~---~~~~~~rte----~Dl 313 (624)
T COG1297 253 VQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKATFESARGR------------R---RAGAVSRTE----RDL 313 (624)
T ss_pred HHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc------------c---ccccccchh----hcC
Confidence 000111 1237999999999999999988888888877776644310 1 111111333 688
Q ss_pred hhHHHHHHHHHHHHHHHHHh-cccc-----ccch----HHHHHHHHHHHHHHHHHhhhhhhccCC--ccccchhHHHHHH
Q 036864 260 PNWVAVSGYILLAVVAIIAV-PFIF-----HQLK----WYHILVAFSFAPILAFCNAYGCGLTDW--SLASNYGKFAIII 327 (563)
Q Consensus 260 P~ww~~~~l~v~~~l~i~~~-~~~~-----~~lp----~~~~~vai~l~~i~~~~~~~~~g~Tg~--~p~~~~~~i~qli 327 (563)
|..|-... ++...+.+... .+.. .... .-.+++++++++.+.-.++++.|..+. +|.+.++.+++++
T Consensus 314 ~~~~~~~~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~ 392 (624)
T COG1297 314 PPKLVLLV-LLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTL 392 (624)
T ss_pred ChhhHHHH-HHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHH
Confidence 87765444 23333333322 2221 0112 234555666677777788899998775 5666666777766
Q ss_pred HHHHh---c--------C--CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhhHHHHHHHHHHHHHhhHHHH
Q 036864 328 FSSWV---G--------L--EHGGIIAGLASCGVMMSTVSTASDLMQDFKTGYLTLSSPRSMFFSQVFGTFLGVVLSPLV 394 (563)
Q Consensus 328 ~g~~~---~--------~--~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QiiG~ivga~v~~~v 394 (563)
.+.++ + + +|....++++.+++++.++.++.|++|||||||++|++||+||.+|++|+++|+++..+|
T Consensus 393 ~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pv 472 (624)
T COG1297 393 LSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPV 472 (624)
T ss_pred HHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHH
Confidence 64433 2 0 124447789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCC-C--C-CCCCCCchhHHHHHHHHhccCCCCCchhhHHHHHH--HHHHHHHHHHHHHHhhhcccccccc
Q 036864 395 FWFFYNAYPIGD-P--E-GTYPSPYGLLYRGIAILGVEGVSSLPKHCLTLAIA--FFAAAIVLNIIREVLQHVDAKCKIY 468 (563)
Q Consensus 395 ~~ll~~~~~i~~-~--~-~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~--~~~iG~~l~i~~~l~~~~~p~~~~~ 468 (563)
+.+++++|++.. + + .+.++||+..+.+.+ .| +|.+..+|.++ +.++|+.+-.+.+.+++ ++.
T Consensus 473 L~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia----~G---vf~~~lew~mi~~g~~~gi~lI~id~~l~~-----~~~ 540 (624)
T COG1297 473 LELLNKAYGFAGAPPRQGMDLAAPQATLMATIA----KG---VFTGNLEWSMILAGAGIGIVLIGIDERLKG-----RGG 540 (624)
T ss_pred HHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh----cc---cCCCCcchHHHHHHHhHhheeeeccHHHhc-----CCc
Confidence 999999999863 1 1 239999999987776 22 44443334333 33444444455655555 356
Q ss_pred ccccchhhcccccchhhhhHHHHHHHHHHHHHHHhcCc-------ccchhhhHHHHHhHHhhhHhHHHHHHHHHhCC
Q 036864 469 RFIPSPMCMAIPFYLGGYFAIDMCVGSLILFVWEMKDK-------RSAADFAPAVASGLICGDSLWSVPAAILSLAN 538 (563)
Q Consensus 469 ~~i~~p~~~~l~~~~~~~~~~~~~iG~~~~~~~~r~~~-------~~~~~y~~~laaGL~aG~al~gviia~l~~~g 538 (563)
++.++++++|++.|+|++.+.++++|++.+|.++|+.+ +..++.++++||||++||+|+|++++.+...+
T Consensus 541 ~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 541 KLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred cccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheec
Confidence 77788999999999999999999999999999998733 33456889999999999999999999877753
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=93.39 E-value=9.3 Score=43.32 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=84.2
Q ss_pred CCChhhHHHHHHHHHHHHHhhHHHHHHHHHccCCCCCCCCCCCCCchhHHHHHHHHhccCCCCCchhhHHHHHHHHHHHH
Q 036864 370 LSSPRSMFFSQVFGTFLGVVLSPLVFWFFYNAYPIGDPEGTYPSPYGLLYRGIAILGVEGVSSLPKHCLTLAIAFFAAAI 449 (563)
Q Consensus 370 ~~pPr~~f~~QiiG~ivga~v~~~v~~ll~~~~~i~~~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~~~iG~ 449 (563)
+.|..++...=+.|.++|.+...++-+.+... ++++-|+..+=+.+-..+-.|+. -. ... .+..+++++.
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~-------~~L~fP~G~A~Ae~l~~g~~g~~-~~-~~~-~l~~g~~~s~ 157 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVE-------SKLPYPEGVACAEVLKAGDKARN-GT-GAK-PIAYGGILAS 157 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCCCCCCHHHHHHHHHccccccc-hh-hHH-HHHHHHHHHH
Confidence 34566777777789999999999877666432 24555555442222111333310 11 112 2334555555
Q ss_pred HHHHHHHHhhhcccc------------ccccccccchhhcccccchhhhhHHHHHHHHHHHHHHH-----hc--Ccc---
Q 036864 450 VLNIIREVLQHVDAK------------CKIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFVWE-----MK--DKR--- 507 (563)
Q Consensus 450 ~l~i~~~l~~~~~p~------------~~~~~~i~~p~~~~l~~~~~~~~~~~~~iG~~~~~~~~-----r~--~~~--- 507 (563)
+..++.- + |.+|. ..+ ..=.+|..+|.|+..+...+..+++|+++.|.+- ++ .+.
T Consensus 158 ~~~~~~~-~-~~~~~~~~~~~~~g~~~~~~-~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~ 234 (591)
T TIGR00733 158 IYAFLGS-L-RVWSGTLSAAKLVGRRALYF-GSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLS 234 (591)
T ss_pred HHHHHHH-h-ccCCchHHHHHhcCCcceEE-EecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 5444421 1 11110 111 1134677889999999999999999999998742 21 111
Q ss_pred cchhhhHH-------HHHhHHhhhHhHHHHHH
Q 036864 508 SAADFAPA-------VASGLICGDSLWSVPAA 532 (563)
Q Consensus 508 ~~~~y~~~-------laaGL~aG~al~gviia 532 (563)
.+++...+ ++.|.+.++++..++..
T Consensus 235 ~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 235 ALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 01111112 58899999999888753
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=84.52 E-value=49 Score=37.80 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=23.0
Q ss_pred hhhcccccchhhhhHHHHHHHHHHHHHH
Q 036864 474 PMCMAIPFYLGGYFAIDMCVGSLILFVW 501 (563)
Q Consensus 474 p~~~~l~~~~~~~~~~~~~iG~~~~~~~ 501 (563)
++.++.|+..|......+++|.++.|++
T Consensus 217 ~~~~g~g~i~p~~~~ls~~~G~v~~w~i 244 (624)
T PF03169_consen 217 PILIGSGLIVPLWAQLSMFLGAVLAWGI 244 (624)
T ss_pred HHhcCCCeeccHHHHHHHHHHHHHHHHh
Confidence 4446788888999999999999999754
No 9
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=42.60 E-value=4.6e+02 Score=30.17 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=21.2
Q ss_pred hhcccccchhhhhHHHHHHHHHHHHHH
Q 036864 475 MCMAIPFYLGGYFAIDMCVGSLILFVW 501 (563)
Q Consensus 475 ~~~~l~~~~~~~~~~~~~iG~~~~~~~ 501 (563)
..++.|...|...+..+++|+++.|++
T Consensus 232 ~~~g~gli~p~~~~~~~~~G~vl~~~i 258 (654)
T TIGR00728 232 AYIGSGLITPFTVGLNMLLGVILAFGI 258 (654)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHHHHH
Confidence 345667778888888899999988754
No 10
>COG1297 Predicted membrane protein [Function unknown]
Probab=35.17 E-value=3.6e+02 Score=30.50 Aligned_cols=128 Identities=17% Similarity=0.110 Sum_probs=71.1
Q ss_pred hhhhhhhcCCChhhHHHHHHHHHHHHHhhHHHHHHHHHccCCCCCCCCCCCCCchhHHHHHHHHhccCCCCCchhhHHHH
Q 036864 362 DFKTGYLTLSSPRSMFFSQVFGTFLGVVLSPLVFWFFYNAYPIGDPEGTYPSPYGLLYRGIAILGVEGVSSLPKHCLTLA 441 (563)
Q Consensus 362 DlK~G~y~~~pPr~~f~~QiiG~ivga~v~~~v~~ll~~~~~i~~~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~ 441 (563)
=+++|++-+-|=+.++..=..|.++|.+..++.-+.+ +- ++++|-|+..+=+.+=+.|. -+++-+++.....
T Consensus 94 l~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~-----Iv--~skLPyPeGvAaAEvL~~g~-~~~gd~~g~~~i~ 165 (624)
T COG1297 94 LLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAM-----IV--ESKLPYPEGVAAAEVLKAGN-QREGDASGIKLIA 165 (624)
T ss_pred HHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeee-----ec--cCCCCCCCchhHHHHHHhcC-CCCCCcccchhhh
Confidence 3677888889999999999999999988877654322 21 35678887655332222233 1111222322222
Q ss_pred HHHHHHHHHHHHHHH---H----------hhhccccccccccccchhhcccccchhhhhHHHHHHHHHHHHHH
Q 036864 442 IAFFAAAIVLNIIRE---V----------LQHVDAKCKIYRFIPSPMCMAIPFYLGGYFAIDMCVGSLILFVW 501 (563)
Q Consensus 442 ~~~~~iG~~l~i~~~---l----------~~~~~p~~~~~~~i~~p~~~~l~~~~~~~~~~~~~iG~~~~~~~ 501 (563)
++..++++..+..- + ..|+-+ .+.... ++..+|.+.+.+......+++|.++.|-+
T Consensus 166 -~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~--~lg~~~-S~AliG~GylvGl~~~iaml~G~~iaWgv 234 (624)
T COG1297 166 -LGGALAALYSLLASGLRVIASSLSAAFSVGRAAF--ALGLGL-SLALIGAGYLVGLPAGIAMLIGIFIAWGV 234 (624)
T ss_pred -hhhHHHHHHHHHhccceeehhhHHHHHHhcchhh--hhcccc-cHHHhCceEEecchHHHHHHHHHHHHHHH
Confidence 33344444333221 0 000000 011221 24445666777788888899999999876
No 11
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=34.09 E-value=89 Score=32.20 Aligned_cols=27 Identities=7% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCChhhHHHHHHHHHHHHHhhHHHHHH
Q 036864 370 LSSPRSMFFSQVFGTFLGVVLSPLVFW 396 (563)
Q Consensus 370 ~~pPr~~f~~QiiG~ivga~v~~~v~~ 396 (563)
+..||+-..+.++.++.+..+.++.+.
T Consensus 271 ~~~~~~~~~~~i~~~l~al~Vg~g~y~ 297 (298)
T PF11449_consen 271 AMNPKAAENATIYSTLPALIVGYGLYF 297 (298)
T ss_pred hhCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 467888888999999999888887664
No 12
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=33.32 E-value=71 Score=32.82 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCChhhH---HHHHHHHHHHHHhhHHHHH-HHHHccCC----CCCCC------CCCCCCchhHHHH
Q 036864 370 LSSPRSM---FFSQVFGTFLGVVLSPLVF-WFFYNAYP----IGDPE------GTYPSPYGLLYRG 421 (563)
Q Consensus 370 ~~pPr~~---f~~QiiG~ivga~v~~~v~-~ll~~~~~----i~~~~------~~~~~P~a~~~~s 421 (563)
|.|.++. +.+|++|.++|+...++.+ ..+.+-++ +..|+ ..+|.|....|+.
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~ 170 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNG 170 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHH
Confidence 4666665 7899999999999999998 45544332 22222 3577776655543
No 13
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=30.58 E-value=7e+02 Score=26.75 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=34.5
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhccCC---ccccchhHHHHHHHHHH
Q 036864 271 LAVVAIIAVPFIFHQLKWYHILVAFSFAPILAFCNAYGCGLTDW---SLASNYGKFAIIIFSSW 331 (563)
Q Consensus 271 ~~~l~i~~~~~~~~~lp~~~~~vai~l~~i~~~~~~~~~g~Tg~---~p~~~~~~i~qli~g~~ 331 (563)
.+..++..+...-.+-.|+..+++.+++..++....+...+... .|..++..++|-.+|-.
T Consensus 16 ~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 16 AIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKN 79 (397)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHH
Confidence 33444444444334556788888888887777776664444422 24444445566666643
No 14
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=24.59 E-value=1.4e+02 Score=22.24 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 036864 257 DQIPNWVAVSGYILLAVVAI 276 (563)
Q Consensus 257 ~~vP~ww~~~~l~v~~~l~i 276 (563)
+.+|.||...- .++++.++
T Consensus 18 nplP~ww~~~f-~~tivfa~ 36 (51)
T PF14715_consen 18 NPLPRWWLWLF-YGTIVFAV 36 (51)
T ss_pred CCCCHHHHHHH-HHHHHHHH
Confidence 56899986443 44555554
Done!