Query 036864
Match_columns 563
No_of_seqs 151 out of 1205
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 12.0 3.3E+02 0.011 20.0 4.7 37 499-536 17-53 (61)
2 2knc_A Integrin alpha-IIB; tra 10.1 2.7E+02 0.0093 20.0 3.5 9 257-265 8-16 (54)
3 2k1a_A Integrin alpha-IIB; sin 9.0 3.4E+02 0.012 18.4 3.5 11 257-267 6-16 (42)
4 1rh5_B Preprotein translocase 8.4 3.9E+02 0.013 20.5 4.0 36 500-536 22-57 (74)
5 3h3g_B Parathyroid hormone-rel 7.7 2.7E+02 0.0091 16.6 2.1 18 359-385 3-20 (24)
6 3llq_A Aquaporin Z 2; aquapori 7.6 1.3E+03 0.045 21.7 13.8 13 374-386 158-170 (256)
7 2l2t_A Receptor tyrosine-prote 7.4 2.7E+02 0.0093 19.1 2.4 15 493-507 26-40 (44)
8 3llq_A Aquaporin Z 2; aquapori 7.3 3.1E+02 0.011 26.2 3.8 19 377-395 113-131 (256)
9 2f2b_A Aquaporin AQPM; protein 7.3 3.1E+02 0.011 25.8 3.8 19 377-395 104-122 (246)
10 2wwb_B SEC61gamma, protein tra 7.3 4.5E+02 0.015 19.8 3.9 35 501-536 22-56 (68)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.04 E-value=3.3e+02 Score=19.99 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHhcCcccchhhhHHHHHhHHhhhHhHHHHHHHHHh
Q 036864 499 FVWEMKDKRSAADFAPAVASGLICGDSLWSVPAAILSL 536 (563)
Q Consensus 499 ~~~~r~~~~~~~~y~~~laaGL~aG~al~gviia~l~~ 536 (563)
++++|-++..+++|..+. -.-..|..++|++-+++..
T Consensus 17 rvlk~~~KPd~~Ef~~ia-k~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 17 RAFLVTKKPNWATYKRAA-KITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HHHHHSCCCCTTHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345665555677776543 3334478888888776554
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.06 E-value=2.7e+02 Score=20.03 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=4.9
Q ss_pred CCchhHHHH
Q 036864 257 DQIPNWVAV 265 (563)
Q Consensus 257 ~~vP~ww~~ 265 (563)
.++|.|.++
T Consensus 8 ~~vp~wiIi 16 (54)
T 2knc_A 8 RAIPIWWVL 16 (54)
T ss_dssp TTCCHHHHH
T ss_pred CCcchHHHH
Confidence 356666543
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.02 E-value=3.4e+02 Score=18.39 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=6.3
Q ss_pred CCchhHHHHHH
Q 036864 257 DQIPNWVAVSG 267 (563)
Q Consensus 257 ~~vP~ww~~~~ 267 (563)
.++|.|.++..
T Consensus 6 ~~vp~wiIi~s 16 (42)
T 2k1a_A 6 RAIPIWWVLVG 16 (42)
T ss_dssp CCCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 45777765433
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.35 E-value=3.9e+02 Score=20.45 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHhcCcccchhhhHHHHHhHHhhhHhHHHHHHHHHh
Q 036864 500 VWEMKDKRSAADFAPAVASGLICGDSLWSVPAAILSL 536 (563)
Q Consensus 500 ~~~r~~~~~~~~y~~~laaGL~aG~al~gviia~l~~ 536 (563)
+++|-++..+++|..+ +-.-..|..++|++-+++.+
T Consensus 22 vlk~~~KPdr~EF~~i-ak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 22 VWLVLKKPTKDEYLAV-AKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHSEECCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455455556777654 33334478888888776554
No 5
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=7.72 E-value=2.7e+02 Score=16.60 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=12.9
Q ss_pred hhhhhhhhhhcCCChhhHHHHHHHHHH
Q 036864 359 LMQDFKTGYLTLSSPRSMFFSQVFGTF 385 (563)
Q Consensus 359 ~~~DlK~G~y~~~pPr~~f~~QiiG~i 385 (563)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368888 888877777643
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=7.56 E-value=1.3e+03 Score=21.65 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q 036864 374 RSMFFSQVFGTFL 386 (563)
Q Consensus 374 r~~f~~QiiG~iv 386 (563)
.+.|..|+++|.+
T Consensus 158 ~~~f~~E~i~Tf~ 170 (256)
T 3llq_A 158 VSALLIEIILTAF 170 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.44 E-value=2.7e+02 Score=19.13 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcCcc
Q 036864 493 VGSLILFVWEMKDKR 507 (563)
Q Consensus 493 iG~~~~~~~~r~~~~ 507 (563)
++..+.+|+|||+.+
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 444455677776644
No 8
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=7.34 E-value=3.1e+02 Score=26.17 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 036864 377 FFSQVFGTFLGVVLSPLVF 395 (563)
Q Consensus 377 f~~QiiG~ivga~v~~~v~ 395 (563)
..+|++|.++|+.+...++
T Consensus 113 iiAQ~lGA~~ga~lv~~~~ 131 (256)
T 3llq_A 113 VIAQVAGAIVAAAALYVIA 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5699999999998876654
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=7.33 E-value=3.1e+02 Score=25.84 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 036864 377 FFSQVFGTFLGVVLSPLVF 395 (563)
Q Consensus 377 f~~QiiG~ivga~v~~~v~ 395 (563)
..+|++|.++|+.+.+.++
T Consensus 104 i~AQ~lGa~~ga~l~~~~~ 122 (246)
T 2f2b_A 104 IIAQLLGAAFGSFIFLQCA 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5799999999999887766
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.30 E-value=4.5e+02 Score=19.75 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHhcCcccchhhhHHHHHhHHhhhHhHHHHHHHHHh
Q 036864 501 WEMKDKRSAADFAPAVASGLICGDSLWSVPAAILSL 536 (563)
Q Consensus 501 ~~r~~~~~~~~y~~~laaGL~aG~al~gviia~l~~ 536 (563)
++|-++..+++|..+.-+. -.|-.++|++-++...
T Consensus 22 lk~~~KPdr~Ef~~iak~~-~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 22 VKRCTKPDRKEFQKIAMAT-AIGFAIMGFIGFFVKL 56 (68)
T ss_dssp HHHCCCCCTHHHHHHHHHS-SHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4554555566676543332 3478888988876544
Done!