Query 036864
Match_columns 563
No_of_seqs 151 out of 1205
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 8.9 1.2E+02 0.0085 17.6 2.4 16 518-533 2-17 (34)
2 d1ymga1 f.19.1.1 (A:6-239) Aqu 7.2 1.2E+02 0.0086 26.2 3.1 18 377-394 85-102 (234)
3 d1v54l_ f.23.6.1 (L:) Mitochon 6.4 3.2E+02 0.023 17.2 3.9 19 29-47 18-36 (46)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.5 1.1E+03 0.078 21.1 10.5 37 359-399 61-97 (405)
5 d1zava1 d.58.62.1 (A:1-177) Ri 4.4 2.6E+02 0.019 22.7 3.4 28 365-392 128-155 (177)
6 d1rh5b_ f.23.28.1 (B:) Preprot 3.9 4.6E+02 0.034 17.2 3.7 35 500-535 11-45 (56)
7 d1j4na_ f.19.1.1 (A:) Aquapori 3.6 3E+02 0.022 23.5 3.3 19 377-395 100-118 (249)
8 d1zcea1 b.122.1.8 (A:2-147) Hy 3.6 1.3E+02 0.0098 24.1 0.7 16 354-369 34-49 (146)
9 d2evea1 b.122.1.8 (A:2-149) Hy 3.0 2E+02 0.014 23.2 1.1 16 354-369 31-46 (148)
10 d2gbsa1 b.122.1.8 (A:2-137) Hy 3.0 2E+02 0.014 22.8 1.1 16 354-369 33-48 (136)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.91 E-value=1.2e+02 Score=17.62 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.2
Q ss_pred HhHHhhhHhHHHHHHH
Q 036864 518 SGLICGDSLWSVPAAI 533 (563)
Q Consensus 518 aGL~aG~al~gviia~ 533 (563)
+++++|.++..+-+.+
T Consensus 2 a~fiagta~tmig~tl 17 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTL 17 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHH
Confidence 6788888877665543
No 2
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.19 E-value=1.2e+02 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 036864 377 FFSQVFGTFLGVVLSPLV 394 (563)
Q Consensus 377 f~~QiiG~ivga~v~~~v 394 (563)
..+|++|.++|+.+...+
T Consensus 85 i~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 85 MVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 379999999999876654
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.37 E-value=3.2e+02 Score=17.20 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 036864 29 MMAFLFAVSFLGLFSIVPL 47 (563)
Q Consensus 29 ~~~~~~~~~llG~~~A~~l 47 (563)
+-+...-+-++|.+||.|+
T Consensus 18 ~rLla~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchH
Confidence 4445555677899999875
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.46 E-value=1.1e+03 Score=21.05 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=18.2
Q ss_pred hhhhhhhhhhcCCChhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 036864 359 LMQDFKTGYLTLSSPRSMFFSQVFGTFLGVVLSPLVFWFFY 399 (563)
Q Consensus 359 ~~~DlK~G~y~~~pPr~~f~~QiiG~ivga~v~~~v~~ll~ 399 (563)
-++|-|.|... -| ....=+.-+++++.+...+-.++.
T Consensus 61 ~L~~~~~gkl~---~~-ti~~~l~tt~iA~~igl~~~~~~~ 97 (405)
T d2nwwa1 61 SISPARLGRVG---VK-IVVYYLLTSAFAVTLGIIMARLFN 97 (405)
T ss_dssp SCTTTTHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hccchhcchHH---HH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666666532 23 333334445556555554444443
No 5
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=4.43 E-value=2.6e+02 Score=22.70 Aligned_cols=28 Identities=4% Similarity=0.131 Sum_probs=22.6
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHhhHH
Q 036864 365 TGYLTLSSPRSMFFSQVFGTFLGVVLSP 392 (563)
Q Consensus 365 ~G~y~~~pPr~~f~~QiiG~ivga~v~~ 392 (563)
+-.+-++|.|...++|++|.+-+..-..
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 4456789999999999999988765443
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.92 E-value=4.6e+02 Score=17.21 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHhcCcccchhhhHHHHHhHHhhhHhHHHHHHHHH
Q 036864 500 VWEMKDKRSAADFAPAVASGLICGDSLWSVPAAILS 535 (563)
Q Consensus 500 ~~~r~~~~~~~~y~~~laaGL~aG~al~gviia~l~ 535 (563)
++++-++..+++|--+ |-.--.|-.++|++-+++.
T Consensus 11 vlk~~~KP~~~Ef~~i-a~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 11 VWLVLKKPTKDEYLAV-AKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHSEECCCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3454444455556432 3333346778888777544
No 7
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.62 E-value=3e+02 Score=23.54 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 036864 377 FFSQVFGTFLGVVLSPLVF 395 (563)
Q Consensus 377 f~~QiiG~ivga~v~~~v~ 395 (563)
..+|++|.++|+.+...++
T Consensus 100 i~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 100 IIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeHHHHHHHHHHhhheeec
Confidence 3689999999887766543
No 8
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.61 E-value=1.3e+02 Score=24.15 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhhhhhc
Q 036864 354 STASDLMQDFKTGYLT 369 (563)
Q Consensus 354 ~qa~~~~~DlK~G~y~ 369 (563)
.||.++++|+|.|.++
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 4899999999999865
No 9
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=3.01 E-value=2e+02 Score=23.17 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=13.4
Q ss_pred HHHHHhhhhhhhhhhc
Q 036864 354 STASDLMQDFKTGYLT 369 (563)
Q Consensus 354 ~qa~~~~~DlK~G~y~ 369 (563)
.||.++++|+|.|-..
T Consensus 31 yqArn~lr~M~~GD~~ 46 (148)
T d2evea1 31 YQARNFLRTMAEGDEF 46 (148)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHhcccCCEE
Confidence 4899999999999643
No 10
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=3.01 E-value=2e+02 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhhhhhc
Q 036864 354 STASDLMQDFKTGYLT 369 (563)
Q Consensus 354 ~qa~~~~~DlK~G~y~ 369 (563)
.||.++|+|+|.|-.+
T Consensus 33 yqArn~mr~M~~GD~~ 48 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDRA 48 (136)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhccCCEE
Confidence 4899999999999654
Done!