BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036865
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 167 LRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPS 226
L+ NG G IP L N + L L L N L+G+IP SLG ++ LR L L N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 227 ISFPVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPN 286
V +N L+G P + N +L + L +N +
Sbjct: 461 ELMYV-----------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL------- 502
Query: 287 YSFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSEL 346
G IP+ +G+L NL +L L N +G+IP + + + L
Sbjct: 503 -------------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 347 RLNNNGLTGPLP 358
LN N G +P
Sbjct: 544 DLNTNLFNGTIP 555
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 12/220 (5%)
Query: 167 LRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPS 226
L N G IP +G L L +L L N+ +G+IP LG L LDL+ N G+IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 227 ISF----PVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPI 282
F + H +G + + + S Q L + + I
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNI 615
Query: 283 TIPNY------SFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNS 336
T Y +F G IP+ +G +P L +L+L N ++GSIP+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 337 FKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNN 376
+L+ ++ L L++N L G +P + M +++ L NN
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNN 714
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 174 GPIPSELGNLT-RLKVLDLHKNNLNGSIPVSLGR--INGLRSLDLSGNKLTGSIPSISFP 230
G +P L NL+ L LDL NN +G I +L + N L+ L L N TG IP
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP---- 412
Query: 231 VXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFI 290
S+N+LSG P S+ +L+ L+ L L N M IP +
Sbjct: 413 -------TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQ-ELM 463
Query: 291 GXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNN 350
G IP L NL+ + L N L G IP L++++ L+L+N
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 351 NGLTGPLPFE----REMVW 365
N +G +P E R ++W
Sbjct: 524 NSFSGNIPAELGDCRSLIW 542
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 167 LRENGNVGPIPSEL-GNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
L EN G IP L G L LDL N+ G++P G + L SL LS N +G +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 226 SISFPVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLN-SLQALILKSNSMGPITI 284
+ S+N SG P S+ NL+ SL L L SN+ +
Sbjct: 336 MDTL----------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 285 PNYSFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVS 344
PN G IP +L L LHL N+L+G+IP+S +L +
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 345 ELRLNNNGLTGPLPFEREMVWKMKS 369
+L+L N L G +P E V +++
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLET 470
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVXX 233
G IP E+G++ L +L+L N+++GSIP +G + GL LDLS NKL G IP
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------- 698
Query: 234 XXXXXXXXXXXXXXXXXSYNHLSGPFP 260
S N+LSGP P
Sbjct: 699 ----AMSALTMLTEIDLSNNNLSGPIP 721
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 307 GPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREM-VW 365
G IP+ +G L L++L L N L+G IP + L ++E+ L+NN L+GP+P EM +
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP---EMGQF 726
Query: 366 KMKSKLRLHNNSGLC 380
+ + NN GLC
Sbjct: 727 ETFPPAKFLNNPGLC 741
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI 227
G IP E+G+L L +LDL N L+G IP ++ + L +DLS N L+G IP +
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 166 VLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
+L N G IPS L N T L + L N L G IP +GR+ L L LS N +G+IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 226 S 226
+
Sbjct: 532 A 532
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 16/188 (8%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVXX 233
G + T LK+L++ N G IP + L+ L L+ NK TG IP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF------ 288
Query: 234 XXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGXX 293
S NH G P + + L++L L SN+ +P + +
Sbjct: 289 ----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMR 343
Query: 294 XXXXXXXXXXXXXGPIPESLGQL-PNLHVLHLDENHLNGSI-PNSFKNLKH-VSELRLNN 350
G +PESL L +L L L N+ +G I PN +N K+ + EL L N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 351 NGLTGPLP 358
NG TG +P
Sbjct: 404 NGFTGKIP 411
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 167 LRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPS 226
L+ NG G IP L N + L L L N L+G+IP SLG ++ LR L L N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 227 ISFPVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPN 286
V +N L+G P + N +L + L +N +
Sbjct: 458 ELMYV-----------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL------- 499
Query: 287 YSFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSEL 346
G IP+ +G+L NL +L L N +G+IP + + + L
Sbjct: 500 -------------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 347 RLNNNGLTGPLP 358
LN N G +P
Sbjct: 541 DLNTNLFNGTIP 552
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 12/220 (5%)
Query: 167 LRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPS 226
L N G IP +G L L +L L N+ +G+IP LG L LDL+ N G+IP+
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 227 ISF----PVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPI 282
F + H +G + + + S Q L + + I
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNI 612
Query: 283 TIPNY------SFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNS 336
T Y +F G IP+ +G +P L +L+L N ++GSIP+
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 337 FKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNN 376
+L+ ++ L L++N L G +P + M +++ L NN
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNN 711
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 174 GPIPSELGNLT-RLKVLDLHKNNLNGSIPVSLGR--INGLRSLDLSGNKLTGSIPSISFP 230
G +P L NL+ L LDL NN +G I +L + N L+ L L N TG IP
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP---- 409
Query: 231 VXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFI 290
S+N+LSG P S+ +L+ L+ L L N M IP +
Sbjct: 410 -------TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQ-ELM 460
Query: 291 GXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNN 350
G IP L NL+ + L N L G IP L++++ L+L+N
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 351 NGLTGPLPFE----REMVW 365
N +G +P E R ++W
Sbjct: 521 NSFSGNIPAELGDCRSLIW 539
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 167 LRENGNVGPIPSEL-GNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
L EN G IP L G L LDL N+ G++P G + L SL LS N +G +P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 226 SISFPVXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLN-SLQALILKSNSMGPITI 284
+ S+N SG P S+ NL+ SL L L SN+ +
Sbjct: 333 MDTL----------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 285 PNYSFIGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVS 344
PN G IP +L L LHL N+L+G+IP+S +L +
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 345 ELRLNNNGLTGPLPFEREMVWKMKS 369
+L+L N L G +P E V +++
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLET 467
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVXX 233
G IP E+G++ L +L+L N+++GSIP +G + GL LDLS NKL G IP
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------- 695
Query: 234 XXXXXXXXXXXXXXXXXSYNHLSGPFP 260
S N+LSGP P
Sbjct: 696 ----AMSALTMLTEIDLSNNNLSGPIP 718
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 307 GPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREM-VW 365
G IP+ +G L L++L L N L+G IP + L ++E+ L+NN L+GP+P EM +
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP---EMGQF 723
Query: 366 KMKSKLRLHNNSGLC 380
+ + NN GLC
Sbjct: 724 ETFPPAKFLNNPGLC 738
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI 227
G IP E+G+L L +LDL N L+G IP ++ + L +DLS N L+G IP +
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 166 VLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
+L N G IPS L N T L + L N L G IP +GR+ L L LS N +G+IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 226 S 226
+
Sbjct: 529 A 529
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 16/188 (8%)
Query: 174 GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVXX 233
G + T LK+L++ N G IP + L+ L L+ NK TG IP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF------ 285
Query: 234 XXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGXX 293
S NH G P + + L++L L SN+ +P + +
Sbjct: 286 ----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMR 340
Query: 294 XXXXXXXXXXXXXGPIPESLGQL-PNLHVLHLDENHLNGSI-PNSFKNLKH-VSELRLNN 350
G +PESL L +L L L N+ +G I PN +N K+ + EL L N
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 351 NGLTGPLP 358
NG TG +P
Sbjct: 401 NGFTGKIP 408
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 120/309 (38%), Gaps = 33/309 (10%)
Query: 56 EPKEQEAVYDIMRATGN--DWATEIP--DVCRGRWHGIECMPDKENVYHVVSLMFGALSD 111
P++++A+ I + GN ++ +P D C W G+ C D + Y V +L L+
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNL 62
Query: 112 DTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHN-PQPIPAFXXXXXXXXXXXVLREN 170
+P I S+ LPYL F Y +N PIP + N
Sbjct: 63 PKPYP--------IPSSLANLPYLN--FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 171 GNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFP 230
+ G IP L + L LD N L+G++P S+ + L + GN+++G+IP
Sbjct: 113 VS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD---- 167
Query: 231 VXXXXXXXXXXXXXXXXXXXSYNHLSGPFPISIRNLNSLQALILKSNSM-GPITIPNYSF 289
S N L+G P + NLN L + L N + G ++
Sbjct: 168 ------SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV----L 216
Query: 290 IGXXXXXXXXXXXXXXXGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLN 349
G +G NL+ L L N + G++P LK + L ++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 350 NNGLTGPLP 358
N L G +P
Sbjct: 277 FNNLCGEIP 285
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 253 NHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGXXXXXXXXXXXXXXXGPIPES 312
N+L GP P +I L L L IT N S G IP+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLY--------ITHTNVS------------------GAIPDF 120
Query: 313 LGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLR 372
L Q+ L L N L+G++P S +L ++ + + N ++G +P K+ + +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 373 LHNN 376
+ N
Sbjct: 181 ISRN 184
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 313 LGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGL 353
G+LP+L L L N L G PN+F+ H+ EL+L N +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 170 NGN-VGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLT 221
NGN + +P+E+ NL+ L+VLDL N L S+P LG L+ N +T
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
>pdb|1XLY|A Chain A, X-Ray Structure Of The Rna-Binding Protein She2p
pdb|1XLY|B Chain B, X-Ray Structure Of The Rna-Binding Protein She2p
Length = 234
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 341 KHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDG---LDSSIDS 397
K +S LR L FER + K KLR +N+S L YNA +G LD DS
Sbjct: 32 KFISHLRR-----VATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADS 86
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 185 RLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
R+KVLDLH N + SIP + ++ L+ L+++ N+L S+P
Sbjct: 422 RIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVP 460
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 311 ESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357
E+ LPNL +L L + + P++F+ L H+ ELRL GL+ +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 316 LPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354
L +L VL+L+ N+LN P F +L + L LN+N LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 185 RLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225
++KVLDLH N + SIP + + L+ L+++ N+L S+P
Sbjct: 451 KVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL-KSVP 489
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 34/102 (33%)
Query: 24 PFTVIMQDSGGSSGLVDGPQTGFSMNKDG------ARTEPKEQEAVYDIMRATGNDWATE 77
P V+ SG + +++G +T ++K+G A T PK Q
Sbjct: 589 PIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQ----------------- 631
Query: 78 IPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCD 119
+P + +W ++ +P+ +N Y DD+A+ + D
Sbjct: 632 LPSLKSLKWKSVDTLPEAKNTY-----------DDSAWTSAD 662
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 180 LGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK 219
LG L++L+VLDLH N + + L R+ + +DL+G K
Sbjct: 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,261,084
Number of Sequences: 62578
Number of extensions: 483187
Number of successful extensions: 1138
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 128
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)