Query 036865
Match_columns 431
No_of_seqs 695 out of 4204
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-34 8.6E-39 313.8 27.0 348 55-429 26-398 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-28 4.3E-33 268.9 19.6 263 99-377 140-439 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.2E-29 9.1E-34 240.2 1.0 299 118-423 157-498 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.7E-24 1E-28 205.7 9.3 245 127-378 96-353 (873)
5 KOG4237 Extracellular matrix p 99.9 2.3E-25 5E-30 205.8 -2.6 285 126-418 84-398 (498)
6 KOG0444 Cytoskeletal regulator 99.9 2.4E-24 5.2E-29 209.0 -0.9 246 123-381 93-377 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 3.4E-24 7.4E-29 208.0 -1.4 247 122-377 44-327 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 6.1E-24 1.3E-28 196.7 -3.8 249 117-379 190-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.4E-27 188.5 -7.2 240 124-379 59-310 (565)
10 PLN03210 Resistant to P. syrin 99.8 1.6E-17 3.4E-22 184.1 21.2 241 123-377 624-904 (1153)
11 PRK15370 E3 ubiquitin-protein 99.8 5.5E-18 1.2E-22 176.9 14.8 219 133-380 199-429 (754)
12 PLN03210 Resistant to P. syrin 99.8 6E-17 1.3E-21 179.5 21.7 239 123-377 602-880 (1153)
13 PRK15387 E3 ubiquitin-protein 99.7 2.4E-17 5.1E-22 171.4 17.1 210 133-379 242-458 (788)
14 KOG0617 Ras suppressor protein 99.7 1.9E-20 4.2E-25 155.0 -5.2 179 160-380 33-213 (264)
15 KOG0618 Serine/threonine phosp 99.7 6.5E-20 1.4E-24 185.8 -4.0 232 134-379 242-489 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 1.7E-16 3.6E-21 165.1 15.2 201 132-364 261-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1.5E-16 3.2E-21 166.3 14.3 217 133-380 178-402 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-18 6.1E-23 164.8 0.9 248 129-378 19-319 (319)
19 KOG0618 Serine/threonine phosp 99.6 1.2E-17 2.7E-22 169.4 -2.6 210 160-378 241-464 (1081)
20 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.4E-22 137.8 -3.3 188 128-360 28-218 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 2.4E-16 5.3E-21 151.4 2.9 228 125-353 43-319 (319)
22 PLN03150 hypothetical protein; 99.6 2.8E-14 6.1E-19 148.3 16.7 173 32-221 347-528 (623)
23 KOG4237 Extracellular matrix p 99.4 7.3E-15 1.6E-19 136.7 -4.0 233 117-355 98-360 (498)
24 PLN03150 hypothetical protein; 99.2 1.9E-11 4.1E-16 127.2 9.5 114 268-383 419-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.5E-17 127.3 0.2 193 132-352 74-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.4E-16 119.3 6.8 176 160-358 116-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 4.9E-17 125.4 -4.6 216 162-405 77-293 (722)
28 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.9E-16 114.6 2.1 172 131-305 119-313 (505)
29 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.4E-16 111.0 0.3 208 123-357 204-415 (490)
30 COG4886 Leucine-rich repeat (L 99.1 9.9E-11 2.2E-15 116.0 5.1 184 127-336 110-296 (394)
31 KOG3207 Beta-tubulin folding c 99.0 4.9E-11 1.1E-15 112.9 0.7 201 151-355 113-340 (505)
32 KOG1909 Ran GTPase-activating 99.0 3.5E-11 7.6E-16 110.9 -0.3 224 128-354 25-283 (382)
33 KOG1259 Nischarin, modulator o 99.0 6.5E-11 1.4E-15 107.0 -0.0 194 176-380 206-413 (490)
34 KOG1909 Ran GTPase-activating 99.0 1.1E-10 2.3E-15 107.7 0.4 210 160-377 30-281 (382)
35 PF14580 LRR_9: Leucine-rich r 98.9 8.6E-10 1.9E-14 95.1 4.8 81 265-347 62-146 (175)
36 KOG1859 Leucine-rich repeat pr 98.8 1.4E-10 3E-15 115.9 -3.6 189 183-382 83-295 (1096)
37 PF14580 LRR_9: Leucine-rich r 98.8 2.8E-09 6E-14 92.0 4.1 106 244-356 20-128 (175)
38 PF13855 LRR_8: Leucine rich r 98.8 5.2E-09 1.1E-13 74.2 3.1 60 294-353 2-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 6.3E-09 1.4E-13 111.2 5.0 103 134-239 546-651 (889)
40 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 72.7 2.9 61 160-220 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.5E-14 107.1 -1.8 195 131-354 70-268 (414)
42 KOG0531 Protein phosphatase 1, 98.6 1.6E-08 3.5E-13 100.7 1.2 221 125-360 87-324 (414)
43 KOG2982 Uncharacterized conser 98.5 1.9E-08 4.2E-13 91.2 0.9 214 129-347 41-285 (418)
44 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.3E-13 102.8 -4.0 185 160-354 84-292 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.4 4.3E-07 9.4E-12 97.3 7.8 139 130-274 520-675 (889)
46 KOG4579 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 80.7 -2.7 131 246-383 30-163 (177)
47 COG5238 RNA1 Ran GTPase-activa 98.3 1.9E-07 4.2E-12 83.8 1.3 91 129-221 26-133 (388)
48 KOG2120 SCF ubiquitin ligase, 98.3 2.2E-08 4.8E-13 90.8 -5.3 176 160-351 185-373 (419)
49 KOG2982 Uncharacterized conser 98.2 4.6E-07 1E-11 82.4 1.0 196 131-330 69-290 (418)
50 KOG4579 Leucine-rich repeat (L 98.1 2.5E-07 5.4E-12 74.7 -2.5 115 244-364 54-169 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.0 6.5E-06 1.4E-10 74.1 4.4 202 154-357 25-288 (388)
52 KOG2120 SCF ubiquitin ligase, 97.9 2.3E-07 5E-12 84.3 -6.1 198 134-346 186-392 (419)
53 PRK15386 type III secretion pr 97.9 6.1E-05 1.3E-09 73.2 9.2 75 154-240 47-122 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.3E-10 51.4 4.0 36 318-354 2-37 (44)
55 PRK15386 type III secretion pr 97.9 8.8E-05 1.9E-09 72.1 9.9 77 128-220 47-124 (426)
56 PF12799 LRR_4: Leucine Rich r 97.9 2.1E-05 4.5E-10 51.3 3.8 37 293-330 1-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.5 4.8E-05 1.1E-09 79.8 3.1 105 133-240 122-230 (699)
58 PF08263 LRRNT_2: Leucine rich 97.5 0.00013 2.8E-09 47.4 3.7 34 57-92 2-43 (43)
59 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 62.3 4.8 60 160-221 42-101 (233)
60 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 61.0 5.5 82 134-221 43-126 (233)
61 KOG3665 ZYG-1-like serine/thre 97.1 0.00026 5.6E-09 74.4 2.5 132 184-331 122-264 (699)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00036 7.8E-09 62.9 1.9 38 160-197 65-104 (260)
63 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 59.9 2.7 63 265-330 63-129 (260)
64 TIGR00864 PCC polycystin catio 96.6 0.00066 1.4E-08 78.8 0.8 72 347-420 1-77 (2740)
65 KOG2123 Uncharacterized conser 96.0 0.0004 8.6E-09 63.1 -4.0 97 132-236 18-123 (388)
66 PF13306 LRR_5: Leucine rich r 95.9 0.031 6.7E-07 45.5 7.0 75 263-343 54-128 (129)
67 KOG2123 Uncharacterized conser 95.8 0.0007 1.5E-08 61.5 -3.2 98 244-347 20-123 (388)
68 KOG4341 F-box protein containi 95.1 0.0018 3.9E-08 62.1 -3.3 63 292-354 345-414 (483)
69 PF00560 LRR_1: Leucine Rich R 95.1 0.0086 1.9E-07 32.5 0.6 19 186-205 2-20 (22)
70 PF13306 LRR_5: Leucine rich r 94.9 0.075 1.6E-06 43.2 6.2 84 261-350 29-112 (129)
71 KOG4341 F-box protein containi 94.7 0.0022 4.7E-08 61.6 -4.0 223 129-353 160-438 (483)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3.1E-07 31.6 0.8 11 320-330 3-13 (22)
73 KOG1947 Leucine rich repeat pr 94.3 0.01 2.2E-07 60.2 -0.6 87 132-219 187-280 (482)
74 KOG4308 LRR-containing protein 93.4 0.00057 1.2E-08 68.8 -11.4 86 135-221 89-185 (478)
75 smart00082 LRRCT Leucine rich 90.8 0.036 7.7E-07 37.1 -1.5 43 376-419 1-46 (51)
76 KOG1947 Leucine rich repeat pr 90.4 0.037 8.1E-07 56.0 -2.5 82 160-241 188-280 (482)
77 KOG4308 LRR-containing protein 88.3 0.0088 1.9E-07 60.3 -8.6 172 184-355 87-304 (478)
78 KOG0473 Leucine-rich repeat pr 88.2 0.019 4.1E-07 51.1 -5.5 88 128-221 37-124 (326)
79 KOG0473 Leucine-rich repeat pr 87.2 0.015 3.3E-07 51.7 -6.6 88 262-354 37-124 (326)
80 smart00370 LRR Leucine-rich re 86.7 0.56 1.2E-05 26.3 1.9 18 341-359 2-19 (26)
81 smart00369 LRR_TYP Leucine-ric 86.7 0.56 1.2E-05 26.3 1.9 18 341-359 2-19 (26)
82 smart00370 LRR Leucine-rich re 86.5 0.55 1.2E-05 26.3 1.8 14 184-197 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 86.5 0.55 1.2E-05 26.3 1.8 14 184-197 2-15 (26)
84 KOG3864 Uncharacterized conser 86.0 0.11 2.4E-06 45.5 -2.0 31 248-278 106-136 (221)
85 KOG3864 Uncharacterized conser 81.0 0.78 1.7E-05 40.3 1.2 65 127-192 119-184 (221)
86 PF13516 LRR_6: Leucine Rich r 80.3 0.28 6.1E-06 27.0 -1.2 10 319-328 4-13 (24)
87 KOG3763 mRNA export factor TAP 74.8 1.7 3.7E-05 43.8 1.7 64 266-331 217-284 (585)
88 smart00364 LRR_BAC Leucine-ric 67.3 3.9 8.4E-05 23.1 1.3 18 341-359 2-19 (26)
89 smart00368 LRR_RI Leucine rich 58.3 8.2 0.00018 22.0 1.7 14 341-354 2-15 (28)
90 KOG3763 mRNA export factor TAP 52.0 7.8 0.00017 39.3 1.5 65 291-357 216-286 (585)
91 KOG4242 Predicted myosin-I-bin 42.8 95 0.0021 31.3 7.2 60 161-220 215-280 (553)
92 smart00367 LRR_CC Leucine-rich 26.8 41 0.00089 18.5 1.2 11 133-143 2-12 (26)
93 TIGR00864 PCC polycystin catio 24.2 53 0.0012 40.3 2.5 32 299-330 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-34 Score=313.84 Aligned_cols=348 Identities=31% Similarity=0.490 Sum_probs=272.6
Q ss_pred CCHHHHHHHHHHHHhcC------CCCCCCCCCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCcccccc
Q 036865 55 TEPKEQEAVYDIMRATG------NDWATEIPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRS 128 (431)
Q Consensus 55 ~~~~e~~~l~~~~~~~~------~~w~~~~~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~ 128 (431)
.++.|..|++++++... .+|.. ..++| .|.||+|+.. .+|+.|++.+.. +.+.+++.
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c--~w~gv~c~~~----~~v~~L~L~~~~----------i~~~~~~~ 88 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNS-SADVC--LWQGITCNNS----SRVVSIDLSGKN----------ISGKISSA 88 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCC--cCcceecCCC----CcEEEEEecCCC----------ccccCChH
Confidence 45678999999988764 25754 34788 8999999743 279999998654 66777888
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhh-cccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLG-QLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~-~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
+..+++|++|++++|... +.+|..+. .+ ++|++|++++|.+.+.+|. +.+++|++|+|++|.+.+.+|..++++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l-~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLS--GPIPDDIFTTS-SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred HhCCCCCCEEECCCCccC--CcCChHHhccC-CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 999999999999988653 57888777 66 8999999999998888875 468899999999999988899999999
Q ss_pred CCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCCCCcceeec
Q 036865 208 NGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNLNSLQALIL 274 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L 274 (431)
++|++|++++|.+.+.+|.. .+++|+.|++++|.+. +|++|++++|.+.+.+|..++++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 99999999999988777765 7889999999888643 7889999999999889999999999999999
Q ss_pred CCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 275 KSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 275 ~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
++|.+ .+.+|. .+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus 244 ~~n~l-~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 244 VYNNL-TGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred cCcee-ccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 99988 445555 6888999999999999998888988889999999999999999889998999999999999999999
Q ss_pred CCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCCCCCC--CCCC---CCCcccccccccccccccccC
Q 036865 355 GPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIGLCES--GKPG---SANSVQHLGTLEENITGTINT 429 (431)
Q Consensus 355 g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~~C~~--~~~~---~~~~l~~l~~~~~~~~~~~~~ 429 (431)
+.+|..+..+..++ .+++++|.... .....+... ..........|.. ..|. ....++.+....+++.+.+|.
T Consensus 322 ~~~~~~~~~l~~L~-~L~L~~n~l~~-~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 322 GKIPVALTSLPRLQ-VLQLWSNKFSG-EIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred CcCChhHhcCCCCC-EEECcCCCCcC-cCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 98888888887776 89998887541 111111111 1101112222211 1111 234567777777778777774
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2e-28 Score=268.89 Aligned_cols=263 Identities=36% Similarity=0.459 Sum_probs=129.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCch
Q 036865 99 YHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPS 178 (431)
Q Consensus 99 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~ 178 (431)
.+++.|++.... +.+.+|..++++++|++|++++|... +.+|..++.+ ++|++|++++|.+.+.+|.
T Consensus 140 ~~L~~L~Ls~n~----------~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 140 PNLETLDLSNNM----------LSGEIPNDIGSFSSLKVLDLGGNVLV--GKIPNSLTNL-TSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred CCCCEEECcCCc----------ccccCChHHhcCCCCCEEECccCccc--ccCChhhhhC-cCCCeeeccCCCCcCcCCh
Confidence 356666665433 33444555555555555555554321 3444445544 4555555555555545555
Q ss_pred hhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCC--------------
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLL-------------- 242 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l-------------- 242 (431)
.++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. .+++|+.|++++|++
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 5555555555555555555445555555555555555555444444432 344444444444432
Q ss_pred ----------C-----------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEee
Q 036865 243 ----------M-----------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILS 301 (431)
Q Consensus 243 ----------~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~ 301 (431)
. +|+.|++++|.+.+..|..+..+++|+.|++++|.+ .+.+|. .+..+++|+.|+++
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~-~l~~~~~L~~L~Ls 364 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPK-NLGKHNNLTVLDLS 364 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCCh-HHhCCCCCcEEECC
Confidence 1 344444444444444444444444444444444444 223332 34444445555555
Q ss_pred CCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 302 NMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 302 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
+|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.+. .+++++|.
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~ 439 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY-FLDISNNN 439 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC-EEECcCCc
Confidence 5554444444444444444444444444444555555555555555555555555555555444443 55555554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-29 Score=240.23 Aligned_cols=299 Identities=24% Similarity=0.268 Sum_probs=200.7
Q ss_pred CCCCCcccc-ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccC
Q 036865 118 CDPTRSHIS-RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNL 196 (431)
Q Consensus 118 ~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l 196 (431)
..+...++| ++|..=.++++|+|++|.+...+ ...+..+ .+|.+|.|+.|+++...+..|.+|++|+.|+|..|+|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~--~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLE--TGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccc--ccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 334444444 34445556667777666552211 1122333 3555566666655544444555556666666555555
Q ss_pred C------------------------ccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-------
Q 036865 197 N------------------------GSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM------- 243 (431)
Q Consensus 197 ~------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~------- 243 (431)
. ..-...|..|.++++|+|..|+++..-..+ ++++|+.|++++|.+.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 4 222234444555555555555554322222 4556666666666543
Q ss_pred ----CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCch---hcCCC
Q 036865 244 ----DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPE---SLGQL 316 (431)
Q Consensus 244 ----~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l 316 (431)
+|++|+|++|+++..-+.++..+..|++|+|+.|.++ .+.+..|.++++|++|||++|.++..+.+ .|..+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~--~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID--HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 6777777777777555566666777777777777764 56666788889999999999998865543 46779
Q ss_pred CCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccccc-
Q 036865 317 PNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSI- 395 (431)
Q Consensus 317 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~- 395 (431)
++|+.|+|.+|++....-.+|.+++.|++|||.+|.+...-|..+..+ .++ +|-+..-.+.|||++.|+.+|+....
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk-~Lv~nSssflCDCql~Wl~qWl~~~~l 469 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK-ELVMNSSSFLCDCQLKWLAQWLYRRKL 469 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh-hhhhcccceEEeccHHHHHHHHHhccc
Confidence 999999999999995444589999999999999999987777777776 555 67777778999999999999986532
Q ss_pred -CCCCCCCCCCCCCCCCcccccccccccc
Q 036865 396 -DSGIGLCESGKPGSANSVQHLGTLEENI 423 (431)
Q Consensus 396 -~~~~~~C~~~~~~~~~~l~~l~~~~~~~ 423 (431)
......|.-|.+...+++..++..+..+
T Consensus 470 q~sv~a~CayPe~Lad~~i~svd~~~lvC 498 (873)
T KOG4194|consen 470 QSSVIAKCAYPEPLADQSIVSVDTANLVC 498 (873)
T ss_pred ccceeeeccCCcccccceeEeechhhcee
Confidence 3678999999999999999888776553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.7e-24 Score=205.66 Aligned_cols=245 Identities=25% Similarity=0.266 Sum_probs=188.3
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccC
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGR 206 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 206 (431)
..|.++++|+.+++..|.. ..||...... .+|+.|+|.+|.+...-.+++..++.|+.|||+.|.|+..--..|..
T Consensus 96 ~~f~nl~nLq~v~l~~N~L---t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNEL---TRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPA 171 (873)
T ss_pred HHHhcCCcceeeeeccchh---hhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC
Confidence 4577899999999888766 6788776665 67899999888877766677888888899999988888433345666
Q ss_pred CCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCCCCcceee
Q 036865 207 INGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNLNSLQALI 273 (431)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 273 (431)
-.++++|+|++|.++..-... .+.+|..|.++.|+++ +|+.|+|..|++.-.--..|.++++|+.|.
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 678888888888887322222 5667888888888765 678888888888733345677888888888
Q ss_pred cCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCC
Q 036865 274 LKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGL 353 (431)
Q Consensus 274 L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 353 (431)
+..|++. .+.+..|.++.++++|+|..|++...-..++.++++|+.|+|++|.|...-++.++..++|++|+|++|++
T Consensus 252 lqrN~I~--kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 252 LQRNDIS--KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhcCcc--cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 8888875 56666788888888888888888876777888888888888888888877778888888888888888888
Q ss_pred CCCCccchHHHhhccceEEcccCCC
Q 036865 354 TGPLPFEREMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 354 ~g~ip~~~~~l~~l~~~l~l~~Np~ 378 (431)
+..-+..+..+..++ .|+|++|..
T Consensus 330 ~~l~~~sf~~L~~Le-~LnLs~Nsi 353 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLE-ELNLSHNSI 353 (873)
T ss_pred ccCChhHHHHHHHhh-hhcccccch
Confidence 865555666666665 777777753
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.3e-25 Score=205.76 Aligned_cols=285 Identities=24% Similarity=0.237 Sum_probs=202.5
Q ss_pred cccccCCCCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeec-CCCCCCCchhhcCCCCCCEEEeecccCCccCccc
Q 036865 126 SRSITKLPYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRE-NGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVS 203 (431)
Q Consensus 126 ~~~l~~l~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 203 (431)
+.+|+.+++||.|||++|.+ ..| |+.+..+ ++|..|-+.+ |++.......|++|..|+.|.+.-|++.-...+.
T Consensus 84 ~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 84 PGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred hhhccchhhhceecccccch---hhcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 35778888888888888876 333 5556666 5666665555 6655433356888888888888888888667778
Q ss_pred ccCCCCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCCCC---CCcEE--------------------EccCCCCCC
Q 036865 204 LGRINGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNLLM---DLILL--------------------DLSYNHLSG 257 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~l~---~L~~L--------------------~ls~n~l~~ 257 (431)
|..+++|..|.+.+|.+. .++.. .+..++.+.+..|.+. +|+.+ .+.++++..
T Consensus 160 l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q 238 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQ 238 (498)
T ss_pred HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcc
Confidence 888888888888888877 44443 4555666666665532 12111 011111111
Q ss_pred CCcccccCCCCccee--ecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcch
Q 036865 258 PFPISIRNLNSLQAL--ILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPN 335 (431)
Q Consensus 258 ~~p~~l~~l~~L~~L--~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 335 (431)
.-+..+ ...++.+ .+..+......-|...|..+++|++|+|++|+++++-+.+|.++..+++|.|..|++...-..
T Consensus 239 ~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~ 316 (498)
T KOG4237|consen 239 EDARKF--LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG 316 (498)
T ss_pred cchhhh--hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH
Confidence 111111 1112222 222222214466777899999999999999999988899999999999999999999965556
Q ss_pred hhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCCCCCCCCCCCCCcccc
Q 036865 336 SFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIGLCESGKPGSANSVQH 415 (431)
Q Consensus 336 ~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~l~~ 415 (431)
.|.++..|+.|+|.+|+|+...|-.+.....+. .+++-.|||.|+|++.|+.+|+......+.+.|..|.--..-.+++
T Consensus 317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~-~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~d 395 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS-TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISD 395 (498)
T ss_pred hhhccccceeeeecCCeeEEEecccccccceee-eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchh
Confidence 889999999999999999988888887777776 8999999999999999999999887678899998765444444444
Q ss_pred ccc
Q 036865 416 LGT 418 (431)
Q Consensus 416 l~~ 418 (431)
+..
T Consensus 396 v~~ 398 (498)
T KOG4237|consen 396 VAF 398 (498)
T ss_pred ccc
Confidence 443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.4e-24 Score=209.03 Aligned_cols=246 Identities=30% Similarity=0.414 Sum_probs=164.8
Q ss_pred ccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCch-hhcCCCCCCEEEeecccCCccCc
Q 036865 123 SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPS-ELGNLTRLKVLDLHKNNLNGSIP 201 (431)
Q Consensus 123 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p 201 (431)
.-+|+.+.++..|..|||++|.. .+.|..+..- +++-+|+|++|++. .||. -|.++..|-+|||++|++. .+|
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL---~EvP~~LE~A-Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQL---REVPTNLEYA-KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred CCCCchhcccccceeeecchhhh---hhcchhhhhh-cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence 45788899999999999998877 7888888777 78889999999866 4564 4668899999999999988 788
Q ss_pred ccccCCCCCcEEEecCCcCCC----CCCCCCCCCcCEEEcCCCC------------CCCCcEEEccCCCCCCCCcccccC
Q 036865 202 VSLGRINGLRSLDLSGNKLTG----SIPSISFPVLNVLDLNQNL------------LMDLILLDLSYNHLSGPFPISIRN 265 (431)
Q Consensus 202 ~~l~~l~~L~~L~L~~n~l~~----~~~~~~l~~L~~L~l~~n~------------l~~L~~L~ls~n~l~~~~p~~l~~ 265 (431)
+.+..+..|++|+|++|.+.. .+| .+++|+.|.+++.+ +.+|..+|++.|.+. .+|+.+.+
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLP--smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLP--SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCc--cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 888889999999999987642 122 34455555555543 125666666666666 56666666
Q ss_pred CCCcceeecCCCCCCCCC---------------------CChhhhcCCCCCcEEEeeCCcCCC-CCchhcCCCCCCcEee
Q 036865 266 LNSLQALILKSNSMGPIT---------------------IPNYSFIGMRNLMILILSNMNLRG-PIPESLGQLPNLHVLH 323 (431)
Q Consensus 266 l~~L~~L~L~~n~l~~~~---------------------i~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ 323 (431)
+++|+.|+|++|+++... +|. .+..+++|+.|.+.+|+++- -+|+.++++.+|+.+.
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 666666666666664222 222 33334444444444444431 2455555555555555
Q ss_pred cccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCccc
Q 036865 324 LDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 324 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~ 381 (431)
.++|.+. .+|+.++.+..|+.|.|+.|++. ++|+.+-.++.+. .||+.+||.+.-
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~-vLDlreNpnLVM 377 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK-VLDLRENPNLVM 377 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc-eeeccCCcCccC
Confidence 5555555 56666777777777777777766 5677766666665 777777775543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.4e-24 Score=207.99 Aligned_cols=247 Identities=28% Similarity=0.387 Sum_probs=157.9
Q ss_pred CccccccccCCCCCcEEEcCcccCC----------------------CCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 122 RSHISRSITKLPYLRTLFFYRCFTH----------------------NPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 122 ~~~l~~~l~~l~~L~~L~l~~~~~~----------------------~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
..++|+.++.+.+|+.|.+.+|... ....||..++.+ ..|+.|+|++|.+. ..|..
T Consensus 44 L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~ 121 (1255)
T KOG0444|consen 44 LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTN 121 (1255)
T ss_pred hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc-ccceeeecchhhhh-hcchh
Confidence 4468888888888888888776431 012344444444 44444444444432 34444
Q ss_pred hcCCCCCCEEEeecccCCccCccc-ccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCC-----------CCCc
Q 036865 180 LGNLTRLKVLDLHKNNLNGSIPVS-LGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLL-----------MDLI 246 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l-----------~~L~ 246 (431)
+...+++-+|+|++|+|. .||.. +.+++.|-.|+|++|++....|.. .+..|+.|.+++|.+ ++|+
T Consensus 122 LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 444444444444444444 33332 234444444455555444222222 344555555555532 2555
Q ss_pred EEEccCCCCC-CCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 247 LLDLSYNHLS-GPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 247 ~L~ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
.|++++.+-+ ..+|.++..+.+|..++++.|.+. .+|+ .+..+++|+.|+|++|+|+ .+.-..+...+|+.|+++
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--~vPe-cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--IVPE-CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC--cchH-HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccc
Confidence 6666654433 367888999999999999999984 4454 6788999999999999998 555555666788888999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCC-CCCccchHHHhhccceEEcccCC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLT-GPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
.|+++ .+|..+.++++|+.|.+.+|+++ .-||.+++.+..+. .+...+|.
T Consensus 277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le-vf~aanN~ 327 (1255)
T KOG0444|consen 277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE-VFHAANNK 327 (1255)
T ss_pred cchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH-HHHhhccc
Confidence 99888 78888888888888888888765 24777777777776 66666663
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=6.1e-24 Score=196.74 Aligned_cols=249 Identities=27% Similarity=0.350 Sum_probs=159.7
Q ss_pred CCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhc-CCCCCCEEEeeccc
Q 036865 117 TCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELG-NLTRLKVLDLHKNN 195 (431)
Q Consensus 117 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~Ls~n~ 195 (431)
.|.+..+.+|+.++.+..|..|++..|.+ ..+| .+..+ ..|.+|++..|.+ ..+|.+.. ++.+|.+|||+.|+
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki---~~lP-ef~gc-s~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKI---RFLP-EFPGC-SLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhccc---ccCC-CCCcc-HHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc
Confidence 34566777888888888888777777655 3333 22232 3344444444432 23444433 55555556666665
Q ss_pred CCccCcccccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCC-------------------------------
Q 036865 196 LNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLM------------------------------- 243 (431)
Q Consensus 196 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~------------------------------- 243 (431)
++ .+|+++..+.+|++||+++|.+++..+.. .+ .|+.|-+.+|.+.
T Consensus 264 lk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred cc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 55 55555555555666666655555322222 23 4555555555332
Q ss_pred -----------------------------------------------CCcEEEccCCCCC--------------------
Q 036865 244 -----------------------------------------------DLILLDLSYNHLS-------------------- 256 (431)
Q Consensus 244 -----------------------------------------------~L~~L~ls~n~l~-------------------- 256 (431)
-....+++.|++.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 1334444444432
Q ss_pred ---CCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCc
Q 036865 257 ---GPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSI 333 (431)
Q Consensus 257 ---~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 333 (431)
+.+|..++.+++|..|++++|-+. .+|. .++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLN--DLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhh--hcch-hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence 245556667777777777777764 5665 3555666777888877777 67777766666777777777777555
Q ss_pred chhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 334 PNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 334 p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
|..+.++.+|..|||.+|.+. .+|..++.+..+. ++.++|||+.
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~-hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR-HLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchh-hCChhhcccccee-EEEecCCccC
Confidence 566899999999999999999 8999999999887 9999999988
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.1e-22 Score=188.47 Aligned_cols=240 Identities=29% Similarity=0.440 Sum_probs=192.4
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVS 203 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 203 (431)
.+.+.+.++..|.+|++.+|.. ..+|..++.+ ..++.++.++|++. .+|+.++.+.+|+.++.++|.+. .+|++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l---~~lp~aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~ 132 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKL---SQLPAAIGEL-EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS 132 (565)
T ss_pred hccHhhhcccceeEEEeccchh---hhCCHHHHHH-HHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch
Confidence 3445677777888888877655 6778888877 67888888887654 67777778888888888888877 67777
Q ss_pred ccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCC----------CCcEEEccCCCCCCCCcccccCCCCccee
Q 036865 204 LGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLM----------DLILLDLSYNHLSGPFPISIRNLNSLQAL 272 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 272 (431)
++.+..|+.++..+|+++...+.. .+.+|..+++.+|+++ .|+++|...|.+. .+|+.++.+.+|+.|
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 787878888888888777333332 5566777777777654 7788888888877 889999999999999
Q ss_pred ecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcC-CCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 273 ILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLG-QLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 273 ~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
++..|++. .+| .|.++..|++++++.|++. .+|.... .++++..|||..|+++ ..|+.+..+.+|.+||+++|
T Consensus 212 yL~~Nki~--~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 212 YLRRNKIR--FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred Hhhhcccc--cCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence 99999985 566 5888999999999999998 6666554 8999999999999999 78999999999999999999
Q ss_pred CCCCCCccchHHHhhccceEEcccCCCc
Q 036865 352 GLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 352 ~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
.++ .+|.+++.+ .++ .+-+.|||..
T Consensus 286 ~is-~Lp~sLgnl-hL~-~L~leGNPlr 310 (565)
T KOG0472|consen 286 DIS-SLPYSLGNL-HLK-FLALEGNPLR 310 (565)
T ss_pred ccc-cCCcccccc-eee-ehhhcCCchH
Confidence 999 578888887 565 8889999854
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.6e-17 Score=184.13 Aligned_cols=241 Identities=22% Similarity=0.281 Sum_probs=148.2
Q ss_pred ccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc
Q 036865 123 SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV 202 (431)
Q Consensus 123 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 202 (431)
..++..+..+++|++|+++++.. ...+|. +..+ ++|++|++++|.....+|..++++++|+.|++++|.....+|.
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKN--LKEIPD-LSMA-TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccccCCCCCEEECCCCCC--cCcCCc-cccC-CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 34555566677777777765422 144443 4444 5677777776665666666666777777777766544345555
Q ss_pred cccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCC----------------------------------------
Q 036865 203 SLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLL---------------------------------------- 242 (431)
Q Consensus 203 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l---------------------------------------- 242 (431)
.+ ++++|++|++++|.....+|.. ..+|+.|++++|.+
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~-~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI-STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc-cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 44 5566666666655433233221 22333333333321
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 243 MDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 243 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
.+|+.|++++|...+.+|..++++++|+.|++++|.. -..+|.. . .+++|+.|++++|.....+|.. ..+|+.|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~-L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN-LETLPTG-I-NLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC-cCeeCCC-C-CccccCEEECCCCCcccccccc---ccccCEe
Confidence 2566677777766666777777788888888877643 2245542 2 5677778888777554455542 3578888
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+..+. .+++++++
T Consensus 852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~-~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE-TVDFSDCG 904 (1153)
T ss_pred ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC-eeecCCCc
Confidence 88888887 6788888888888888888643335777666666664 66766554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=5.5e-18 Score=176.91 Aligned_cols=219 Identities=22% Similarity=0.344 Sum_probs=172.6
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
+.|+.|++++|.+ ..+|..+. .+|++|++++|.+. .+|..+. .+|+.|+|++|.+. .+|..+. .+|++
T Consensus 199 ~~L~~L~Ls~N~L---tsLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNEL---KSLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCC---CcCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCE
Confidence 4789999998876 57787654 58999999999876 5676553 47999999999998 7787765 58999
Q ss_pred EEecCCcCCCCCCCCCCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCC
Q 036865 213 LDLSGNKLTGSIPSISFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITI 284 (431)
Q Consensus 213 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i 284 (431)
|++++|++. .+|....++|+.|++++|+++ +|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+
T Consensus 267 L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt--~L 340 (754)
T PRK15370 267 LDLFHNKIS-CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT--SL 340 (754)
T ss_pred EECcCCccC-ccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCccc--cC
Confidence 999999998 567665678999999999876 4678899999998 456544 368999999999986 46
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 285 PNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
|.. + .++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|++. .+|..+..+
T Consensus 341 P~~-l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 341 PAS-L--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred Chh-h--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 642 3 378999999999998 6776553 68999999999999 5676554 37999999999998 677766544
Q ss_pred ----hhccceEEcccCCCcc
Q 036865 365 ----WKMKSKLRLHNNSGLC 380 (431)
Q Consensus 365 ----~~l~~~l~l~~Np~~c 380 (431)
+.+ ..+++.+||+..
T Consensus 411 ~~~~~~l-~~L~L~~Npls~ 429 (754)
T PRK15370 411 RGEGPQP-TRIIVEYNPFSE 429 (754)
T ss_pred hhcCCCc-cEEEeeCCCccH
Confidence 233 379999999763
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=6e-17 Score=179.53 Aligned_cols=239 Identities=22% Similarity=0.300 Sum_probs=157.1
Q ss_pred ccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc
Q 036865 123 SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV 202 (431)
Q Consensus 123 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 202 (431)
..+|..+ ...+|+.|++.++.. ..++..+..+ ++|++|+++++...+.+|. ++.+++|++|+|++|.....+|.
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~s~l---~~L~~~~~~l-~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQGSKL---EKLWDGVHSL-TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCcC-CccCCcEEECcCccc---cccccccccC-CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 4555555 467888999988765 5677777777 7999999998876777774 78899999999999876668899
Q ss_pred cccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCC--------CCCCcEEEccCCCCCCCCcccccCCCCcceee
Q 036865 203 SLGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNL--------LMDLILLDLSYNHLSGPFPISIRNLNSLQALI 273 (431)
Q Consensus 203 ~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~--------l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 273 (431)
.++++++|+.|++++|.....+|.. .+++|+.|++++|. ..+|++|++++|.+. .+|..+ .+++|++|.
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELI 753 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-ccccccccc
Confidence 9999999999999998655567765 78899999998874 237889999999876 455443 344444444
Q ss_pred -------------------------------cCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 274 -------------------------------LKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 274 -------------------------------L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
+++|.. ...+|. .+.++++|+.|++++|...+.+|..+ .+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-LVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCC-ccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 444432 223333 34445555555555543333444433 34555555
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
++++|.....+|.. ..+|+.|+|++|.+. .+|..+..+..+. .+++++++
T Consensus 831 ~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~-~L~L~~C~ 880 (1153)
T PLN03210 831 DLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLS-FLDMNGCN 880 (1153)
T ss_pred ECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCC-EEECCCCC
Confidence 55554433333322 245666666666665 5666666665554 66766643
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.4e-17 Score=171.37 Aligned_cols=210 Identities=28% Similarity=0.286 Sum_probs=129.9
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
++|++|++++|.+ ..+|.. .++|++|++++|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|++
T Consensus 242 ~~Lk~LdLs~N~L---tsLP~l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~ 306 (788)
T PRK15387 242 PELRTLEVSGNQL---TSLPVL----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQE 306 (788)
T ss_pred CCCcEEEecCCcc---CcccCc----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccce
Confidence 4556666655544 233321 135555555555543 23321 245666677777666 45542 356777
Q ss_pred EEecCCcCCCCCCCCCCCCcCEEEcCCCCCC-------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCC
Q 036865 213 LDLSGNKLTGSIPSISFPVLNVLDLNQNLLM-------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIP 285 (431)
Q Consensus 213 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~ 285 (431)
|++++|.+++ +|. ....|+.|++++|+++ +|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+|
T Consensus 307 LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~--~LP 378 (788)
T PRK15387 307 LSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT--SLP 378 (788)
T ss_pred eECCCCcccc-CCC-CcccccccccccCccccccccccccceEecCCCccC-CCCCC---Ccccceehhhccccc--cCc
Confidence 8888777763 443 2345667777777665 5777888887777 34432 245666777777764 344
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHh
Q 036865 286 NYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVW 365 (431)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~ 365 (431)
.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+.
T Consensus 379 ~l----~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 379 AL----PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred cc----ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhcc
Confidence 31 356778888888877 45543 356778888888877 45543 245677788888877 6777777766
Q ss_pred hccceEEcccCCCc
Q 036865 366 KMKSKLRLHNNSGL 379 (431)
Q Consensus 366 ~l~~~l~l~~Np~~ 379 (431)
.+. .+++++|++.
T Consensus 446 ~L~-~LdLs~N~Ls 458 (788)
T PRK15387 446 SET-TVNLEGNPLS 458 (788)
T ss_pred CCC-eEECCCCCCC
Confidence 665 7888888765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-20 Score=154.98 Aligned_cols=179 Identities=28% Similarity=0.487 Sum_probs=125.0
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
.+.+.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|.++..+++|+.|+++-|++.
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------------------ 92 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------------------ 92 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------------------
Confidence 45666677777654 55666777777777777777776 66777777777777776666554
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
.+|..|+.++.|+.|++.+|++....+|. .|-.++.|+.|+|++|.+. .+|..++++++|
T Consensus 93 ------------------~lprgfgs~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~lt~l 152 (264)
T KOG0617|consen 93 ------------------ILPRGFGSFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL 152 (264)
T ss_pred ------------------cCccccCCCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence 44666677777777777777775555554 3445677777777777777 777778888888
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhc--cceEEcccCCCcc
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKM--KSKLRLHNNSGLC 380 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l--~~~l~l~~Np~~c 380 (431)
+.|.+..|.+. .+|..++.+..|++|.+.+|+++ .+|.+++.+... ++.+.+.+|||.-
T Consensus 153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 88888888877 67788888888888888888887 666666554322 2366777888763
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=6.5e-20 Score=185.78 Aligned_cols=232 Identities=29% Similarity=0.385 Sum_probs=158.0
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEE
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSL 213 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 213 (431)
+|++++++.+.. ..+|+.++.+ .+|+.++..+|.+ ..+|..+..+.+|+.|.+.+|.+. .+|....+++.|++|
T Consensus 242 nl~~~dis~n~l---~~lp~wi~~~-~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 242 NLQYLDISHNNL---SNLPEWIGAC-ANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cceeeecchhhh---hcchHHHHhc-ccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 344555544433 4455555555 4555555555554 244555555555555555555555 445555555555555
Q ss_pred EecCCcCCCCCCCCC----CCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCC
Q 036865 214 DLSGNKLTGSIPSIS----FPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNS 278 (431)
Q Consensus 214 ~L~~n~l~~~~~~~~----l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 278 (431)
+|..|.+. .+|... ...|+.|+.+.|++. .|+.|.+.+|.++...-+.+.++++|+.|+|++|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 55555554 333221 111333333333322 67788899999998777788899999999999999
Q ss_pred CCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCC-CC
Q 036865 279 MGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTG-PL 357 (431)
Q Consensus 279 l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g-~i 357 (431)
+. .+|...+.++..|+.|+|++|+++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|+++. .+
T Consensus 395 L~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 395 LN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 85 788888889999999999999999 88899999999999999999998 667 68899999999999999873 33
Q ss_pred ccchHHHhhccceEEcccCCCc
Q 036865 358 PFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 358 p~~~~~l~~l~~~l~l~~Np~~ 379 (431)
|+..- .+.++ +||++||++.
T Consensus 470 ~~~~p-~p~Lk-yLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PEALP-SPNLK-YLDLSGNTRL 489 (1081)
T ss_pred hhhCC-Ccccc-eeeccCCccc
Confidence 43321 24554 9999999864
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.7e-16 Score=165.08 Aligned_cols=201 Identities=25% Similarity=0.296 Sum_probs=160.8
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
.++|+.|++++|.+ ..+|.. ..+|+.|++++|.+. .+|. .+++|++|++++|+++ .+|... .+|+
T Consensus 261 p~sL~~L~Ls~N~L---~~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp---~~L~ 325 (788)
T PRK15387 261 PPGLLELSIFSNPL---THLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALP---SELC 325 (788)
T ss_pred ccccceeeccCCch---hhhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCCc---cccc
Confidence 46889999998866 445542 257899999999876 4664 3578999999999998 466532 4688
Q ss_pred EEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC-------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCC
Q 036865 212 SLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM-------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITI 284 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i 284 (431)
.|++++|.++ .+|. ...+|+.|++++|+++ +|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+
T Consensus 326 ~L~Ls~N~L~-~LP~-lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt--~L 397 (788)
T PRK15387 326 KLWAYNNQLT-SLPT-LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT--SL 397 (788)
T ss_pred ccccccCccc-cccc-cccccceEecCCCccCCCCCCCcccceehhhccccc-cCccc---ccccceEEecCCccc--CC
Confidence 8999999998 4664 2357999999999876 5778999999998 46653 357999999999986 45
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 285 PNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus 398 P~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 398 PVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 542 468999999999999 57753 357899999999999 789999999999999999999999888776544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=1.5e-16 Score=166.30 Aligned_cols=217 Identities=26% Similarity=0.393 Sum_probs=171.9
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
.+...|+++++.. ..+|..+. ++|+.|++++|.+. .+|..+. .+|++|++++|+++ .+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~L---tsLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGL---TTIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCc---CcCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccE
Confidence 4567899987655 56776553 57999999999877 5776654 58999999999998 6787664 57999
Q ss_pred EEecCCcCCCCCCCCCCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCC
Q 036865 213 LDLSGNKLTGSIPSISFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITI 284 (431)
Q Consensus 213 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i 284 (431)
|++++|.+. .+|.....+|+.|++++|++. +|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+
T Consensus 246 L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt--~L 319 (754)
T PRK15370 246 MELSINRIT-ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT--AL 319 (754)
T ss_pred EECcCCccC-cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc--cC
Confidence 999999998 677665678999999999865 6899999999998 4565443 57999999999986 45
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 285 PNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
|.. + .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+..
T Consensus 320 P~~-l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~- 388 (754)
T PRK15370 320 PET-L--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPA- 388 (754)
T ss_pred Ccc-c--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHH-
Confidence 542 2 368999999999998 4776653 79999999999998 577655 368999999999999 67766542
Q ss_pred hhccceEEcccCCCcc
Q 036865 365 WKMKSKLRLHNNSGLC 380 (431)
Q Consensus 365 ~~l~~~l~l~~Np~~c 380 (431)
.+. .+++++|....
T Consensus 389 -sL~-~LdLs~N~L~~ 402 (754)
T PRK15370 389 -ALQ-IMQASRNNLVR 402 (754)
T ss_pred -HHH-HHhhccCCccc
Confidence 343 78899987653
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.8e-18 Score=164.82 Aligned_cols=248 Identities=21% Similarity=0.200 Sum_probs=138.8
Q ss_pred ccCCCCCcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCCCCC------CCchhhcCCCCCCEEEeecccCCccC
Q 036865 129 ITKLPYLRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENGNVG------PIPSELGNLTRLKVLDLHKNNLNGSI 200 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~ 200 (431)
+..++.|++|+++++..... ..++..+... ++|++++++++.+.+ .++..+.++++|++|++++|.+.+..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 33444455566555533211 1233333333 445555555554431 12233445556666666665555433
Q ss_pred cccccCCCC---CcEEEecCCcCCCCCC----CC--CC-CCcCEEEcCCCCCC---------------CCcEEEccCCCC
Q 036865 201 PVSLGRING---LRSLDLSGNKLTGSIP----SI--SF-PVLNVLDLNQNLLM---------------DLILLDLSYNHL 255 (431)
Q Consensus 201 p~~l~~l~~---L~~L~L~~n~l~~~~~----~~--~l-~~L~~L~l~~n~l~---------------~L~~L~ls~n~l 255 (431)
+..+..+.+ |++|++++|.+.+... .. .+ ++|+.|++++|.++ .|++|++++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 433333333 6666666555542100 00 22 45555555555443 577778888877
Q ss_pred CCC----CcccccCCCCcceeecCCCCCCCCCCC--hhhhcCCCCCcEEEeeCCcCCCCCchhcC-----CCCCCcEeec
Q 036865 256 SGP----FPISIRNLNSLQALILKSNSMGPITIP--NYSFIGMRNLMILILSNMNLRGPIPESLG-----QLPNLHVLHL 324 (431)
Q Consensus 256 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~~i~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L 324 (431)
++. ++..+..+++|++|++++|.++..... ...+..+++|++|++++|.+++.....+. ..+.|++|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 742 233445567899999999887422111 12355678899999999988753222221 2478999999
Q ss_pred ccccCCC----CcchhhcCCcCCcEEEccCCCCCCCCcc----chHHH-hhccceEEcccCCC
Q 036865 325 DENHLNG----SIPNSFKNLKHVSELRLNNNGLTGPLPF----EREMV-WKMKSKLRLHNNSG 378 (431)
Q Consensus 325 ~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~ip~----~~~~l-~~l~~~l~l~~Np~ 378 (431)
++|.++. .+...+..+++|+++++++|.+...-.. .+... +.+ ..+++.+|||
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL-ESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch-hhcccCCCCC
Confidence 9998872 3345566778899999999988854222 22222 233 3788888875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-17 Score=169.42 Aligned_cols=210 Identities=30% Similarity=0.413 Sum_probs=172.3
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLN 238 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~ 238 (431)
.+|++++++.|.++ .+|+.++.+.+|+.++..+|+++ .+|..+..+.+|+.|.+..|.+....+.. .++.|++|++.
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 57899999998876 56788889999999999999996 88888888999999999999888444444 58899999999
Q ss_pred CCCCC------------CCcEEEccCCCCCCCCcc-cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcC
Q 036865 239 QNLLM------------DLILLDLSYNHLSGPFPI-SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNL 305 (431)
Q Consensus 239 ~n~l~------------~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l 305 (431)
.|++. .|..|+.+.|.+. ..|. .=..++.|+.|++.+|.+++..+| .+.++++|+.|+|++|++
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchh--hhccccceeeeeeccccc
Confidence 99876 3555666666666 3331 223467899999999999765565 578899999999999999
Q ss_pred CCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCC
Q 036865 306 RGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 306 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~ 378 (431)
.......+.++..|++|+|++|+++ .+|..+..++.|++|...+|.+. ..| ++..++.++ .+|++.|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~-~lDlS~N~L 464 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK-VLDLSCNNL 464 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce-EEecccchh
Confidence 9444456788999999999999999 88999999999999999999998 678 777777776 999999864
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-17 Score=137.75 Aligned_cols=188 Identities=26% Similarity=0.467 Sum_probs=148.4
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
.+.++.+++.|.+++|.. ..+|..+..+ .+|+.|++++|.+. .+|..++.+++|+.|+++-|++. .+|..|+.+
T Consensus 28 gLf~~s~ITrLtLSHNKl---~~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKL---TVVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCce---eecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 355677888889998877 7889999999 89999999999865 78999999999999999999998 899999999
Q ss_pred CCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChh
Q 036865 208 NGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNY 287 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~ 287 (431)
+.|+.||+.+|++... .+|..|..++.|+.|++++|.+. -+|.
T Consensus 102 p~levldltynnl~e~----------------------------------~lpgnff~m~tlralyl~dndfe--~lp~- 144 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNEN----------------------------------SLPGNFFYMTTLRALYLGDNDFE--ILPP- 144 (264)
T ss_pred chhhhhhccccccccc----------------------------------cCCcchhHHHHHHHHHhcCCCcc--cCCh-
Confidence 9999999999987621 34555666777777888888763 4444
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCc---CCcEEEccCCCCCCCCccc
Q 036865 288 SFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLK---HVSELRLNNNGLTGPLPFE 360 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~L~~L~L~~N~l~g~ip~~ 360 (431)
.++.+++|+.|.+..|.+- .+|..++.++.|++|.+.+|+++ .+|..++++. +=+.+.+.+|++...|.+.
T Consensus 145 dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 4677888888888888877 78888888888888888888888 6666665543 2345667778777555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=2.4e-16 Score=151.38 Aligned_cols=228 Identities=24% Similarity=0.257 Sum_probs=149.8
Q ss_pred ccccccCCCCCcEEEcCcccCCC--C--CCCChhhhcccccccEEEeecCCCCCCCchhhcCCCC---CCEEEeecccCC
Q 036865 125 ISRSITKLPYLRTLFFYRCFTHN--P--QPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTR---LKVLDLHKNNLN 197 (431)
Q Consensus 125 l~~~l~~l~~L~~L~l~~~~~~~--~--~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~---L~~L~Ls~n~l~ 197 (431)
++..+...+.|++++++++.... . ..++..+..+ ++|++|++++|.+.+..+..+..+.+ |++|++++|+++
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 44455566677777776654421 0 1233445554 67777777777766555555554444 777777777766
Q ss_pred c----cCcccccCC-CCCcEEEecCCcCCCCCCC----C--CCCCcCEEEcCCCCCC---------------CCcEEEcc
Q 036865 198 G----SIPVSLGRI-NGLRSLDLSGNKLTGSIPS----I--SFPVLNVLDLNQNLLM---------------DLILLDLS 251 (431)
Q Consensus 198 ~----~~p~~l~~l-~~L~~L~L~~n~l~~~~~~----~--~l~~L~~L~l~~n~l~---------------~L~~L~ls 251 (431)
+ .+...+..+ ++|+.|++++|.+++.... . .+++|++|++++|.++ +|++|+++
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 2 223344555 6777777777776632111 1 3456777777777654 78899999
Q ss_pred CCCCCCC----CcccccCCCCcceeecCCCCCCCCCCCh---hhhcCCCCCcEEEeeCCcCCC----CCchhcCCCCCCc
Q 036865 252 YNHLSGP----FPISIRNLNSLQALILKSNSMGPITIPN---YSFIGMRNLMILILSNMNLRG----PIPESLGQLPNLH 320 (431)
Q Consensus 252 ~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~i~~---~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~ 320 (431)
+|.+.+. +...+..+++|++|++++|.++...+.. ......+.|++|++++|.+++ .+...+..+++|+
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 9988743 3345667889999999999885311111 111124799999999999973 2345566778999
Q ss_pred EeecccccCCCC----cchhhcCC-cCCcEEEccCCCC
Q 036865 321 VLHLDENHLNGS----IPNSFKNL-KHVSELRLNNNGL 353 (431)
Q Consensus 321 ~L~L~~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l 353 (431)
++++++|.+... +...+... +.|+++++.+|.+
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999954 44455555 7899999998864
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=2.8e-14 Score=148.26 Aligned_cols=173 Identities=26% Similarity=0.428 Sum_probs=119.2
Q ss_pred CCCCCCCcCCCccceecccCCCCCCHHHHHHHHHHHHhcCC----CCCCCCCCCCC---CCccceEeCCCC-CCeeEEEE
Q 036865 32 SGGSSGLVDGPQTGFSMNKDGARTEPKEQEAVYDIMRATGN----DWATEIPDVCR---GRWHGIECMPDK-ENVYHVVS 103 (431)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~----~w~~~~~~~C~---~~w~gv~C~~~~-~~~~~v~~ 103 (431)
..+..|.+.+.|.+-.... +..+.++|.+|+..++..++. +|.. ++|. +.|.||.|.... .....|+.
T Consensus 347 ~~~s~pilNaiEI~~~~~~-~~~t~~~~~~aL~~~k~~~~~~~~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~ 422 (623)
T PLN03150 347 KKGTHAIINAIEVFEIITA-ESKTLLEEVSALQTLKSSLGLPLRFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDG 422 (623)
T ss_pred CCCCcceeeeeeeeecccc-ccccCchHHHHHHHHHHhcCCcccCCCCC---CCCCCcccccccceeeccCCCCceEEEE
Confidence 3444577888887766553 445778899999999987753 5653 4563 269999996322 12235777
Q ss_pred EecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCC
Q 036865 104 LMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNL 183 (431)
Q Consensus 104 l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l 183 (431)
|++.... +.|.+|+.+.++++|+.|+|++|... +.+|..++.+ ++|+.|+|++|.+.+.+|..++++
T Consensus 423 L~L~~n~----------L~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 423 LGLDNQG----------LRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EECCCCC----------ccccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcC
Confidence 7776543 66777777777777777777776542 5677777777 677777777777777777777777
Q ss_pred CCCCEEEeecccCCccCcccccCC-CCCcEEEecCCcCC
Q 036865 184 TRLKVLDLHKNNLNGSIPVSLGRI-NGLRSLDLSGNKLT 221 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~ 221 (431)
++|++|+|++|.++|.+|..++.+ .++..+++.+|...
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 777777777777777777766553 35566666666543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=7.3e-15 Score=136.69 Aligned_cols=233 Identities=23% Similarity=0.259 Sum_probs=171.5
Q ss_pred CCCCCCccc-cccccCCCCCcEEEcCc-ccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecc
Q 036865 117 TCDPTRSHI-SRSITKLPYLRTLFFYR-CFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKN 194 (431)
Q Consensus 117 ~~~~~~~~l-~~~l~~l~~L~~L~l~~-~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n 194 (431)
...+....| |.+|..++.|.+|.+.+ |.+ ..+|+..+.-...|+.|.+.-|++.-...+.|..+++|..|.+-+|
T Consensus 98 LS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI---~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 98 LSKNNISFIAPDAFKGLASLLSLVLYGNNKI---TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred ccccchhhcChHhhhhhHhhhHHHhhcCCch---hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 333334443 56899999999998887 555 7888765544378999999999888777788999999999999999
Q ss_pred cCCccCcc-cccCCCCCcEEEecCCcCCC--CCCCC------------CCCCcCEEEcCCCCCC---------CCcEE--
Q 036865 195 NLNGSIPV-SLGRINGLRSLDLSGNKLTG--SIPSI------------SFPVLNVLDLNQNLLM---------DLILL-- 248 (431)
Q Consensus 195 ~l~~~~p~-~l~~l~~L~~L~L~~n~l~~--~~~~~------------~l~~L~~L~l~~n~l~---------~L~~L-- 248 (431)
.+. .++. .+..+..++++.+..|.+.. .+|.. .+.-..-..+.+.++. .++.+
T Consensus 175 ~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s 253 (498)
T KOG4237|consen 175 KIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS 253 (498)
T ss_pred hhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence 988 5665 88899999999998887431 11100 0000000111111111 22222
Q ss_pred Ecc-CCCCCCCCc-ccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeeccc
Q 036865 249 DLS-YNHLSGPFP-ISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDE 326 (431)
Q Consensus 249 ~ls-~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 326 (431)
.++ .+...+..| ..|..+++|++|++++|+++ .+.+.+|.+...++.|.|..|++...-...|.++..|+.|+|.+
T Consensus 254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~--~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT--RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred hhccccCcCCcChHHHHhhcccceEeccCCCccc--hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 112 222333444 45789999999999999996 77777999999999999999999866667788999999999999
Q ss_pred ccCCCCcchhhcCCcCCcEEEccCCCCCC
Q 036865 327 NHLNGSIPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 327 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
|+|+-..|..|..+.+|..|+|-.|++..
T Consensus 332 N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 332 NQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CeeEEEecccccccceeeeeehccCcccC
Confidence 99998888899999999999999998874
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=1.9e-11 Score=127.24 Aligned_cols=114 Identities=34% Similarity=0.519 Sum_probs=101.8
Q ss_pred CcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEE
Q 036865 268 SLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELR 347 (431)
Q Consensus 268 ~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 347 (431)
.++.|+|++|.+ .+.+|. .+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+
T Consensus 419 ~v~~L~L~~n~L-~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGL-RGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCc-cccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 378899999999 567776 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccchHHHhhccceEEcccCCCcccCC
Q 036865 348 LNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 348 L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~ 383 (431)
|++|+++|.+|..+.........+++.+|+..|+..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999877643222478999999999753
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.2e-12 Score=127.35 Aligned_cols=193 Identities=28% Similarity=0.369 Sum_probs=123.3
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
+..-...|++.|.. ..+|..+..+ ..|+.+.+..|.+. .+|..++++..|.+|||+.|+++ .+|..+..|+ |+
T Consensus 74 ltdt~~aDlsrNR~---~elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF---SELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccchhhhhcccccc---ccCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 33344456666555 5677777776 67777777777644 67777788888888888888877 7777777765 77
Q ss_pred EEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhh
Q 036865 212 SLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSF 289 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~ 289 (431)
.|.+++|+++ .+|.. ..+ .|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|++ +
T Consensus 147 vli~sNNkl~-~lp~~ig~~~-------------tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~--~lp~E-l 208 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLP-------------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE--DLPEE-L 208 (722)
T ss_pred eEEEecCccc-cCCcccccch-------------hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh--hCCHH-H
Confidence 7888887776 33332 222 3334455555555 56667777777777777777764 55553 2
Q ss_pred cCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhc---CCcCCcEEEccCCC
Q 036865 290 IGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFK---NLKHVSELRLNNNG 352 (431)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~ 352 (431)
. .-.|..||++.|++. .+|-.|.+|..|++|-|.+|.+. ..|..+. ...-.++|+..-++
T Consensus 209 ~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 C-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred h-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 2 234666777777777 66777777777777777777777 4444332 22334555555553
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.4e-11 Score=119.31 Aligned_cols=176 Identities=39% Similarity=0.567 Sum_probs=107.4
Q ss_pred ccccEEEeecCCCCCCCchhhcCCC-CCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEE
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLT-RLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLD 236 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~ 236 (431)
+.++.|++.+|.+. .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .++.. ..+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~----- 187 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN----- 187 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhh-----
Confidence 46777777777654 4555555553 7777777777776 55566677777777777777776 33332 3333
Q ss_pred cCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCC
Q 036865 237 LNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQL 316 (431)
Q Consensus 237 l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 316 (431)
|+.|++++|++. .+|..+.....|++|.+++|.+. ..+. .+..+.++..+.+.+|++. .++..++.+
T Consensus 188 --------L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~--~~~~-~~~~~~~l~~l~l~~n~~~-~~~~~~~~l 254 (394)
T COG4886 188 --------LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII--ELLS-SLSNLKNLSGLELSNNKLE-DLPESIGNL 254 (394)
T ss_pred --------hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce--ecch-hhhhcccccccccCCceee-eccchhccc
Confidence 344445555555 44544444555777777777421 2222 3455666666667777666 335566666
Q ss_pred CCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 317 PNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 317 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
++++.|++++|.++ .++. ++.+.+++.|++++|.+....|
T Consensus 255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 77777777777777 3333 6667777777777776665444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.3e-12 Score=125.36 Aligned_cols=216 Identities=25% Similarity=0.306 Sum_probs=165.4
Q ss_pred ccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCC
Q 036865 162 LQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQN 240 (431)
Q Consensus 162 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n 240 (431)
-...+++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+|+++.|+++ .+|.. ..-
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l---------- 143 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL---------- 143 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC----------
Confidence 445788888866 78988998999999999999998 89999999999999999999998 44443 222
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCc
Q 036865 241 LLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLH 320 (431)
Q Consensus 241 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 320 (431)
-|+.|-+++|+++ .+|+.++.+..|..|+.+.|.+. .++. .+.++.+|+.|.+..|++. .+|..+..+ .|.
T Consensus 144 ---pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~--slps-ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi 214 (722)
T KOG0532|consen 144 ---PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ--SLPS-QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLI 214 (722)
T ss_pred ---cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh--hchH-HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-cee
Confidence 3556667777777 78899998899999999999985 6666 5788999999999999999 677777755 699
Q ss_pred EeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCC
Q 036865 321 VLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIG 400 (431)
Q Consensus 321 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~ 400 (431)
.||++.|++. .+|..|.+|..|++|-|.+|++. .-|..++...+..-.-+|+ -..|.. ..-.......++....
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~--~qA~q~--~~a~~~~t~~RP~~~~ 288 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLS--TQACQS--GGALDLYTTLRPRHFS 288 (722)
T ss_pred eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeec--chhccc--cCCcccccccCCcccC
Confidence 9999999999 89999999999999999999999 5676766554443111222 223421 1122233334456667
Q ss_pred CCCCC
Q 036865 401 LCESG 405 (431)
Q Consensus 401 ~C~~~ 405 (431)
.|...
T Consensus 289 ~c~~e 293 (722)
T KOG0532|consen 289 SCHVE 293 (722)
T ss_pred Ccchh
Confidence 77653
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.7e-11 Score=114.58 Aligned_cols=172 Identities=26% Similarity=0.252 Sum_probs=78.7
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCC--chhhcCCCCCCEEEeecccCCccCcc-cccCC
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPI--PSELGNLTRLKVLDLHKNNLNGSIPV-SLGRI 207 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l 207 (431)
++..|+...|.++.....+.- .....+ ++++.|+|+.|-+..-. -.....|++|+.|+|+.|++...... .-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchh-hhhhhC-CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 455666666665544211100 234444 56666666666433221 12234566666666666665411111 11234
Q ss_pred CCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCC-----------CCCCcEEEccCCCCCCCCc--ccccCCCCcce
Q 036865 208 NGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNL-----------LMDLILLDLSYNHLSGPFP--ISIRNLNSLQA 271 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~-----------l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~ 271 (431)
+.|+.|.|+.|+++..--.. .+|+|+.|++..|. +..|++|||++|++.. .+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 56666666666665211111 45666666665552 1145555555554441 11 23344455555
Q ss_pred eecCCCCCCCCCCChh----hhcCCCCCcEEEeeCCcC
Q 036865 272 LILKSNSMGPITIPNY----SFIGMRNLMILILSNMNL 305 (431)
Q Consensus 272 L~L~~n~l~~~~i~~~----~~~~l~~L~~L~L~~n~l 305 (431)
|+++.+++.+..+++. ....+++|++|++..|++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555555443333321 012234455555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.5e-11 Score=110.98 Aligned_cols=208 Identities=29% Similarity=0.307 Sum_probs=126.2
Q ss_pred ccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeec-ccCCccCc
Q 036865 123 SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHK-NNLNGSIP 201 (431)
Q Consensus 123 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p 201 (431)
..+|-.+.-+++|+.+.++.|... .|-+.. .+.+.|+++...+..+. ..|. +--...+....-+. .-.+|..-
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~---~i~~~~-~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTE---NIVDIE-LLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNGSAL 277 (490)
T ss_pred cccccchHHhhhhheeeeeccchh---heecee-ecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCCceE
Confidence 345556667888888888887653 222211 12267888888765433 2221 11111111111111 11223333
Q ss_pred ccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCC
Q 036865 202 VSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSM 279 (431)
Q Consensus 202 ~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 279 (431)
..+.....|+++||++|.++ .+..+ -.|+++.|+ +++|.+. .+ ..+..+++|+.|++++|.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~-------------lS~N~i~-~v-~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLI-------------LSQNRIR-TV-QNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEe-------------cccccee-ee-hhhhhcccceEeecccchh
Confidence 34445567888888888877 34333 345444444 4444444 12 2366778888899998887
Q ss_pred CCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC-cchhhcCCcCCcEEEccCCCCCCCC
Q 036865 280 GPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS-IPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 280 ~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
+ .+.. +-..+.++++|.|+.|.+. .+ ..++++-+|..||+++|+|... -...++++|.|+.+.|.+|++.+.+
T Consensus 342 s--~~~G-wh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 342 A--ECVG-WHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred H--hhhh-hHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 5 3332 3345778889999998886 22 3467788899999999988732 1236889999999999999998644
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=9.9e-11 Score=115.99 Aligned_cols=184 Identities=36% Similarity=0.507 Sum_probs=139.1
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccc-cccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccccc
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQ-TLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLG 205 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 205 (431)
..+..++.++.|++.++.+ ..++...... . +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i---~~i~~~~~~~-~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~ 183 (394)
T COG4886 110 SELLELTNLTSLDLDNNNI---TDIPPLIGLL-KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS 183 (394)
T ss_pred hhhhcccceeEEecCCccc---ccCccccccc-hhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh
Confidence 3455668899999998877 6777777665 4 8999999999866 56667899999999999999999 7777776
Q ss_pred CCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCC
Q 036865 206 RINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPIT 283 (431)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 283 (431)
.+++|+.|++++|.+. .+|.. ....|+++. +++|.+. ..+..+.++.++..+.+.+|++. .
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~-------------~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~--~ 246 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELD-------------LSNNSII-ELLSSLSNLKNLSGLELSNNKLE--D 246 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhhhhhhhhhh-------------hcCCcce-ecchhhhhcccccccccCCceee--e
Confidence 8999999999999998 55553 333355544 4444322 35566777888888888888764 2
Q ss_pred CChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchh
Q 036865 284 IPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNS 336 (431)
Q Consensus 284 i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 336 (431)
++ ..+..++.++.|++++|+++ .++. ++.+.+++.|++++|.+...++..
T Consensus 247 ~~-~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 247 LP-ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cc-chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 22 25667788999999999888 4444 778889999999998888555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.9e-11 Score=112.87 Aligned_cols=201 Identities=25% Similarity=0.277 Sum_probs=144.9
Q ss_pred CChhhhcccccccEEEeecCCCCCCCc--hhhcCCCCCCEEEeecccCCc--cCcccccCCCCCcEEEecCCcCCCCCCC
Q 036865 151 IPAFLGQLGQTLQTLVLRENGNVGPIP--SELGNLTRLKVLDLHKNNLNG--SIPVSLGRINGLRSLDLSGNKLTGSIPS 226 (431)
Q Consensus 151 ip~~i~~l~~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 226 (431)
+-..-.++ ++|+.+.|.++... ..+ .....+++++.|||+.|-+.. .+......+++|+.|+++.|++......
T Consensus 113 i~akQsn~-kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 113 IAAKQSNL-KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHhhhH-HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 33333455 78999999887643 333 356689999999999997662 2333456889999999999998743333
Q ss_pred C---CCCCcCEEEcCCCCCC------------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcC
Q 036865 227 I---SFPVLNVLDLNQNLLM------------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIG 291 (431)
Q Consensus 227 ~---~l~~L~~L~l~~n~l~------------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~ 291 (431)
. .++.|+.|.++.|.++ +|+.|++.+|..-..-.....-+..|++|+|++|++-.... ....+.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~ 269 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGT 269 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-cccccc
Confidence 2 6889999999999876 89999999996332333344557889999999998742221 124567
Q ss_pred CCCCcEEEeeCCcCCCC-Cchh-----cCCCCCCcEeecccccCCCCcc--hhhcCCcCCcEEEccCCCCCC
Q 036865 292 MRNLMILILSNMNLRGP-IPES-----LGQLPNLHVLHLDENHLNGSIP--NSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 292 l~~L~~L~L~~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~g 355 (431)
++.|..|+++.+.+... .|+. ...+++|++|++..|++.. .+ ..+..+++|+.|.+..|+++.
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccccccc
Confidence 89999999999998753 2333 3467899999999999962 22 245667888888888888874
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=3.5e-11 Score=110.90 Aligned_cols=224 Identities=20% Similarity=0.199 Sum_probs=98.4
Q ss_pred cccCCCCCcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCCCCC----CCchh-------hcCCCCCCEEEeecc
Q 036865 128 SITKLPYLRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENGNVG----PIPSE-------LGNLTRLKVLDLHKN 194 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~~~~----~~p~~-------~~~l~~L~~L~Ls~n 194 (431)
.+..+..++.++|++|.++.- ..+-..+.+. +.|+..++++- ++| .+|+. +...++|++|+||+|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344455566666666544210 1223333443 45555555542 222 23322 234556677777776
Q ss_pred cCCccCccc----ccCCCCCcEEEecCCcCCCCCCCCC-CCCcCEEEcCC--CCCCCCcEEEccCCCCCCC----Ccccc
Q 036865 195 NLNGSIPVS----LGRINGLRSLDLSGNKLTGSIPSIS-FPVLNVLDLNQ--NLLMDLILLDLSYNHLSGP----FPISI 263 (431)
Q Consensus 195 ~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~l~~--n~l~~L~~L~ls~n~l~~~----~p~~l 263 (431)
.+....+.. +..+..|++|.|.+|++.. ..... -..|.+|..+. -.-..|+.+...+|++... +...+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 665333322 2345666777776666541 10000 00011110000 0011344444444444321 11233
Q ss_pred cCCCCcceeecCCCCCCCCCC--ChhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCCcchhh
Q 036865 264 RNLNSLQALILKSNSMGPITI--PNYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGSIPNSF 337 (431)
Q Consensus 264 ~~l~~L~~L~L~~n~l~~~~i--~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 337 (431)
...+.|+.+.+..|.+....+ ....+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+...-...+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 444555555555555532111 112344555666666666655422 22334445556666666665553222211
Q ss_pred -----cCCcCCcEEEccCCCCC
Q 036865 338 -----KNLKHVSELRLNNNGLT 354 (431)
Q Consensus 338 -----~~l~~L~~L~L~~N~l~ 354 (431)
...|+|+.|.+.+|.++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHhccCCCCceeccCcchhH
Confidence 23455666666666554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6.5e-11 Score=107.00 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=134.1
Q ss_pred CchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC-CCCCcCEE------------EcCCCCC
Q 036865 176 IPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI-SFPVLNVL------------DLNQNLL 242 (431)
Q Consensus 176 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L------------~l~~n~l 242 (431)
+|-.+.-+.+|+.+.++.+.-. .+-.-...-|.|+++.+.+..++. .|.. ....+... -....-+
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cccccchhhhcCccCCCCCccCCceEEecchH
Confidence 3434455677888888877543 222222334678888877665442 1110 11111100 0111123
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 243 MDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 243 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
..|+++|+++|.|+ .+.++..-.|.++.|+++.|.+. .+. .+..+++|+.|||++|.++ .+..|-.++-+++.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~--~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR--TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee--eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 47899999999998 67788888999999999999985 332 3677999999999999998 666777788999999
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC-ccchHHHhhccceEEcccCCCcc
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL-PFEREMVWKMKSKLRLHNNSGLC 380 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~l~~~l~l~~Np~~c 380 (431)
.|++|.+. .+ ..+.++-+|..||+++|++...- ..+++.++-+. ++.|.+||..-
T Consensus 358 ~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE-~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE-TLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHH-HHhhcCCCccc
Confidence 99999988 32 45788889999999999987311 23566666665 88899998653
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=107.73 Aligned_cols=210 Identities=23% Similarity=0.197 Sum_probs=135.3
Q ss_pred ccccEEEeecCCCCCC----CchhhcCCCCCCEEEeeccc---CCccCcc-------cccCCCCCcEEEecCCcCCCCCC
Q 036865 160 QTLQTLVLRENGNVGP----IPSELGNLTRLKVLDLHKNN---LNGSIPV-------SLGRINGLRSLDLSGNKLTGSIP 225 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~L~~n~l~~~~~ 225 (431)
..++++++++|.+... +...+.+.++|+..++++-- ....+|+ .+...++|++|+||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 6899999999987532 44456677889999887632 1223443 34566799999999998763322
Q ss_pred CCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCc-------------ccccCCCCcceeecCCCCCCCCCCC--hhhhc
Q 036865 226 SISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFP-------------ISIRNLNSLQALILKSNSMGPITIP--NYSFI 290 (431)
Q Consensus 226 ~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p-------------~~l~~l~~L~~L~L~~n~l~~~~i~--~~~~~ 290 (431)
.. |..|- ...+.|++|.|.+|.+...-. .-...-+.|+.+...+|++.++... ...|.
T Consensus 110 ~~----l~~ll---~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 110 RG----LEELL---SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred HH----HHHHH---HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 21 00000 012345555555555542111 1223457899999999998644322 13466
Q ss_pred CCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCC----cchhhcCCcCCcEEEccCCCCCCCCccchH
Q 036865 291 GMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGS----IPNSFKNLKHVSELRLNNNGLTGPLPFERE 362 (431)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 362 (431)
..+.|+.+.+..|.|... +...+..+++|+.|||.+|-++.. +...+..+++|++|++++|.+...-...+.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 678999999999998732 234567899999999999999842 345677889999999999988744333222
Q ss_pred H-----HhhccceEEcccCC
Q 036865 363 M-----VWKMKSKLRLHNNS 377 (431)
Q Consensus 363 ~-----l~~l~~~l~l~~Np 377 (431)
. .+++. .+.+.+|.
T Consensus 263 ~al~~~~p~L~-vl~l~gNe 281 (382)
T KOG1909|consen 263 DALKESAPSLE-VLELAGNE 281 (382)
T ss_pred HHHhccCCCCc-eeccCcch
Confidence 1 12332 66666664
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=8.6e-10 Score=95.15 Aligned_cols=81 Identities=28% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCC-CchhcCCCCCCcEeecccccCCCCc---chhhcCC
Q 036865 265 NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGP-IPESLGQLPNLHVLHLDENHLNGSI---PNSFKNL 340 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l 340 (431)
.++.|++|++++|.++ .+.......+++|++|++++|+|... .-..+..+++|+.|+|.+|+++..- ...+..+
T Consensus 62 ~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp --TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred ChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 3445555555555543 22221112345555555555555421 0123445566666666666665321 1134556
Q ss_pred cCCcEEE
Q 036865 341 KHVSELR 347 (431)
Q Consensus 341 ~~L~~L~ 347 (431)
|+|+.||
T Consensus 140 P~Lk~LD 146 (175)
T PF14580_consen 140 PSLKVLD 146 (175)
T ss_dssp TT-SEET
T ss_pred ChhheeC
Confidence 6666665
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.85 E-value=1.4e-10 Score=115.94 Aligned_cols=189 Identities=26% Similarity=0.307 Sum_probs=129.9
Q ss_pred CCCCCEEEeecccCCccC-cccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCC-----------------C--
Q 036865 183 LTRLKVLDLHKNNLNGSI-PVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQ-----------------N-- 240 (431)
Q Consensus 183 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~-----------------n-- 240 (431)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. .... --..|++|-..+ |
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 445555555433322222 6678888999999999998763 1110 011222222111 0
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchh-cCCCCCC
Q 036865 241 LLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPES-LGQLPNL 319 (431)
Q Consensus 241 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L 319 (431)
....|...+.++|.+. .+..++.-++.|+.|+|++|+++... .+..+++|++|||++|.+. .+|.. ...+ .|
T Consensus 162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL 234 (1096)
T ss_pred hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhc-cccccchhhh-hh
Confidence 1126777888888887 66678888899999999999986322 5778999999999999998 55542 2233 49
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCcc-chHHHhhccceEEcccCCCcccC
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPF-EREMVWKMKSKLRLHNNSGLCYN 382 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~l~~~l~l~~Np~~c~~ 382 (431)
+.|.+++|.++ .+ ..+.++.+|+.||+++|-+.+.--- .+..+..+. +|+|.|||..|..
T Consensus 235 ~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~-~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 235 QLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI-VLWLEGNPLCCAP 295 (1096)
T ss_pred eeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH-HHhhcCCccccCH
Confidence 99999999998 33 4578999999999999988864322 223344444 8999999999887
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.8e-09 Score=92.01 Aligned_cols=106 Identities=28% Similarity=0.381 Sum_probs=38.0
Q ss_pred CCcEEEccCCCCCCCCccccc-CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhc-CCCCCCcE
Q 036865 244 DLILLDLSYNHLSGPFPISIR-NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESL-GQLPNLHV 321 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~ 321 (431)
++++|+|.+|.|+. + +.++ .+.+|+.|++++|.++ .+. .+..+++|+.|++++|+++. +...+ ..+++|++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~--~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT--KLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----T--T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc--ccc--CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 34445555555542 2 2343 4677888888888875 333 36667888888888888884 43333 35788888
Q ss_pred eecccccCCCCc-chhhcCCcCCcEEEccCCCCCCC
Q 036865 322 LHLDENHLNGSI-PNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 322 L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
|++++|++...- -..+..+++|+.|++.+|+++..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 888888887421 13567788888888888888743
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.2e-09 Score=74.20 Aligned_cols=60 Identities=43% Similarity=0.596 Sum_probs=37.5
Q ss_pred CCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCC
Q 036865 294 NLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGL 353 (431)
Q Consensus 294 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 353 (431)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666644445566666666666666666655555666666666666666653
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.3e-09 Score=111.19 Aligned_cols=103 Identities=32% Similarity=0.452 Sum_probs=54.8
Q ss_pred CCcEEEcCcccCCCCCCCChhh-hcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFL-GQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i-~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
.|++|-+.++.. ....++..+ ..+ +.|++||+++|.-.+.+|..+++|-+|++|+++++.+. .+|..++++++|.+
T Consensus 546 ~L~tLll~~n~~-~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-WLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecch-hhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 455555544421 013333332 223 56666666665555566666666666666666666665 56666666666666
Q ss_pred EEecCCcCCCCCCCC--CCCCcCEEEcCC
Q 036865 213 LDLSGNKLTGSIPSI--SFPVLNVLDLNQ 239 (431)
Q Consensus 213 L~L~~n~l~~~~~~~--~l~~L~~L~l~~ 239 (431)
|++..+.....++.. .+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 666655443333332 355555555543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1e-08 Score=72.66 Aligned_cols=61 Identities=38% Similarity=0.514 Sum_probs=48.8
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKL 220 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 220 (431)
++|++|++++|.+....+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688888888877755556788888888888888888866667888888888888888864
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.1e-09 Score=107.10 Aligned_cols=195 Identities=30% Similarity=0.392 Sum_probs=106.5
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCC
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGL 210 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 210 (431)
.+..++.+.+..+.+ ..+-..+..+ .+|+.|++.+|.+.+. ...+..+++|++|++++|.|+.. ..+..++.|
T Consensus 70 ~l~~l~~l~l~~n~i---~~~~~~l~~~-~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI---AKILNHLSKL-KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhh---hhhhcccccc-cceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccch
Confidence 445555555555544 2222334444 5677777777765532 22255677777777777777632 235556667
Q ss_pred cEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCc-ccccCCCCcceeecCCCCCCCCCCChhh
Q 036865 211 RSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFP-ISIRNLNSLQALILKSNSMGPITIPNYS 288 (431)
Q Consensus 211 ~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~i~~~~ 288 (431)
+.|++++|.+. .+... .++ .|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. +. .
T Consensus 143 ~~L~l~~N~i~-~~~~~~~l~-------------~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~--~ 203 (414)
T KOG0531|consen 143 KELNLSGNLIS-DISGLESLK-------------SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IE--G 203 (414)
T ss_pred hhheeccCcch-hccCCccch-------------hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--cc--c
Confidence 77777777766 22222 233 45556666666653222 1 4667778888888887642 21 2
Q ss_pred hcCCCCCcEEEeeCCcCCCCCchhcCCCCC--CcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 289 FIGMRNLMILILSNMNLRGPIPESLGQLPN--LHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
+..+..+..+++..|.++..-+ +..+.. |+.+++++|.+. ..+..+..+..+..+++.+|++.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 2233444444666666652211 112222 666666666666 33344555666666666666554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=1.6e-08 Score=100.75 Aligned_cols=221 Identities=29% Similarity=0.315 Sum_probs=155.5
Q ss_pred ccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccc
Q 036865 125 ISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSL 204 (431)
Q Consensus 125 l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 204 (431)
+-..+..++.|+.|++.+|.+ ..+...+..+ ++|++|++++|.+.... .+..++.|+.|++++|.+. .+ ..+
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i---~~i~~~l~~~-~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~ 158 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKI---EKIENLLSSL-VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGL 158 (414)
T ss_pred hhcccccccceeeeeccccch---hhcccchhhh-hcchheecccccccccc--chhhccchhhheeccCcch-hc-cCC
Confidence 334578899999999998876 4444435566 89999999999887553 3667888999999999998 33 356
Q ss_pred cCCCCCcEEEecCCcCCCCCC--CCCCCCcCEEEcCCCCCC---------CCcEEEccCCCCCCCCcccccCCCC--cce
Q 036865 205 GRINGLRSLDLSGNKLTGSIP--SISFPVLNVLDLNQNLLM---------DLILLDLSYNHLSGPFPISIRNLNS--LQA 271 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~---------~L~~L~ls~n~l~~~~p~~l~~l~~--L~~ 271 (431)
..+++|+.+++++|.+...-+ ...+.+++.+.+..|.+. .+..+++..|.+...- .+..+.. |+.
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRE 236 (414)
T ss_pred ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHH
Confidence 668999999999999984433 267888888999888766 3334466666666321 1222333 888
Q ss_pred eecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC---cch-hhcCCcCCcEEE
Q 036865 272 LILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS---IPN-SFKNLKHVSELR 347 (431)
Q Consensus 272 L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p~-~l~~l~~L~~L~ 347 (431)
+++.+|.+. .++ ..+..+..+..|++.+|++...- .+.....+..+....|.+... ... .....+.++.+.
T Consensus 237 l~l~~n~i~--~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 237 LYLSGNRIS--RSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HhcccCccc--ccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 999999875 221 24556788889999998887332 234556777777777776622 112 256678888999
Q ss_pred ccCCCCCCCCccc
Q 036865 348 LNNNGLTGPLPFE 360 (431)
Q Consensus 348 L~~N~l~g~ip~~ 360 (431)
+..|.+....+..
T Consensus 312 ~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 312 LELNPIRKISSLD 324 (414)
T ss_pred cccCccccccccc
Confidence 9999888666543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.9e-08 Score=91.16 Aligned_cols=214 Identities=21% Similarity=0.226 Sum_probs=116.0
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC--CCchhhcCCCCCCEEEeecccCCccCcccccC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG--PIPSELGNLTRLKVLDLHKNNLNGSIPVSLGR 206 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 206 (431)
+.....+..|.+.++.+.+.+.. ..++.....++.++|.+|.++. .+-..+.+||.|++|+|+.|++...|-..-..
T Consensus 41 v~s~ra~ellvln~~~id~~gd~-~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDV-MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhH-HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 33344455555555544333322 2333333677778888776653 23333457788888888888776332211134
Q ss_pred CCCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcc-------------------ccc
Q 036865 207 INGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPI-------------------SIR 264 (431)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~-------------------~l~ 264 (431)
+.+|++|.|.+..+....... .+|.+++|.++.|.+ +.+++..+.+....+. --.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~---rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL---RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh---hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 567778877777665322222 566667777766633 2233333333211100 012
Q ss_pred CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCC-CchhcCCCCCCcEeecccccCCCCcch------hh
Q 036865 265 NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGP-IPESLGQLPNLHVLHLDENHLNGSIPN------SF 337 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~------~l 337 (431)
.++++..+.+..|.+.+..- ...+..++.+..|+|+.|+|... --+.+.+++.|..|.+++|.+...+.. .+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hcccchheeeecCcccchhh-cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 24566666666666543222 22345566666777777777632 124466777888888888777643221 24
Q ss_pred cCCcCCcEEE
Q 036865 338 KNLKHVSELR 347 (431)
Q Consensus 338 ~~l~~L~~L~ 347 (431)
+.+++++.|+
T Consensus 276 aRL~~v~vLN 285 (418)
T KOG2982|consen 276 ARLTKVQVLN 285 (418)
T ss_pred eeccceEEec
Confidence 5666666665
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1.1e-08 Score=102.79 Aligned_cols=185 Identities=27% Similarity=0.338 Sum_probs=124.9
Q ss_pred ccccEEEeecCCCCCCC-chhhcCCCCCCEEEeecccCCccCcccccCC-CCCcEEEecCCcCC----------CCCCCC
Q 036865 160 QTLQTLVLRENGNVGPI-PSELGNLTRLKVLDLHKNNLNGSIPVSLGRI-NGLRSLDLSGNKLT----------GSIPSI 227 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~~~~ 227 (431)
++++.|.+-.-.-.+.. |-.+..+..|++|.+.++.+.. ...+..+ ..|++|.. .|.+. |.+...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence 45556655443322222 5567788999999999998873 1222222 23444432 22211 122222
Q ss_pred -CCCCcCEEEcCCCCCC----------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCc
Q 036865 228 -SFPVLNVLDLNQNLLM----------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLM 296 (431)
Q Consensus 228 -~l~~L~~L~l~~n~l~----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~ 296 (431)
...+|...+.++|.+. .|+.|+|++|++... ..+..+++|++|||++|.+. .+|.....++. |+
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc--cccccchhhhh-he
Confidence 3445667777777664 788999999999843 37888999999999999986 55543334444 99
Q ss_pred EEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCc-chhhcCCcCCcEEEccCCCCC
Q 036865 297 ILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSI-PNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 297 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~ 354 (431)
.|.+++|.++ .+ ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|++.
T Consensus 236 ~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999998 33 34678999999999999887521 123566788999999999986
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=4.3e-07 Score=97.31 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=98.6
Q ss_pred cCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCC--CCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 130 TKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENG--NVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~--~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
.+....|.+.+.++.. ..++..... +.|++|-+.+|. +....+..|..++.|++|||++|.--+.+|..++++
T Consensus 520 ~~~~~~rr~s~~~~~~---~~~~~~~~~--~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKI---EHIAGSSEN--PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cchhheeEEEEeccch---hhccCCCCC--CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 3446677777766644 344444433 579999999986 443333457889999999999988777999999999
Q ss_pred CCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCC-----------CCCCcEEEccCCCCC--CCCcccccCCCCccee
Q 036865 208 NGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNL-----------LMDLILLDLSYNHLS--GPFPISIRNLNSLQAL 272 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~-----------l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L 272 (431)
-+|++|+++++.+. .+|.. .+..|.+|++..+. +.+|++|.+...... ...-..+.++.+|+.+
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 99999999999998 77776 78888899888764 668888887665422 1122233444445444
Q ss_pred ec
Q 036865 273 IL 274 (431)
Q Consensus 273 ~L 274 (431)
..
T Consensus 674 s~ 675 (889)
T KOG4658|consen 674 SI 675 (889)
T ss_pred ee
Confidence 44
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=2.2e-08 Score=80.73 Aligned_cols=131 Identities=22% Similarity=0.233 Sum_probs=97.1
Q ss_pred cEEEccCCCCCCCCccc---ccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 246 ILLDLSYNHLSGPFPIS---IRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
..++|+.+.+. .+++. +.....|+..++++|.+. .+|...-..++.++.|++++|+++ .+|..+..++.|+.|
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 34556666554 33433 345567777899999886 677655556678899999999999 788889999999999
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~ 383 (431)
+++.|.+. ..|..+..+.++..|+..+|.+. ++|..+. .+.+....++.++||.-.|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~-~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF-YSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh-ccccHHHHHhcCCcccccCc
Confidence 99999999 66777777999999999999887 6776632 23333356778888775554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=1.9e-07 Score=83.76 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=55.7
Q ss_pred ccCCCCCcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCCCCCC----Cc-------hhhcCCCCCCEEEeeccc
Q 036865 129 ITKLPYLRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENGNVGP----IP-------SELGNLTRLKVLDLHKNN 195 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~~~~~----~p-------~~~~~l~~L~~L~Ls~n~ 195 (431)
+..+..++.++|++|.++.- ..+-..+..- ++|+..++++- +++. ++ +.+.++++|+..+||+|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~-~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANV-RNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhh-cceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34467777778877755321 1233344444 56777776653 2322 22 234577888888888888
Q ss_pred CCccCccc----ccCCCCCcEEEecCCcCC
Q 036865 196 LNGSIPVS----LGRINGLRSLDLSGNKLT 221 (431)
Q Consensus 196 l~~~~p~~----l~~l~~L~~L~L~~n~l~ 221 (431)
+....|+. +..-+.|.+|.+++|++.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 77655554 345577888888888764
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.2e-08 Score=90.78 Aligned_cols=176 Identities=20% Similarity=0.161 Sum_probs=104.2
Q ss_pred ccccEEEeecCCCCCC-CchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCc-CCCCCCCC---CCCCcCE
Q 036865 160 QTLQTLVLRENGNVGP-IPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK-LTGSIPSI---SFPVLNV 234 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~---~l~~L~~ 234 (431)
..|++|||++..++.. +-..+..+.+|+.|.|.++++...+...+.+-.+|+.|+++.+. ++..-... .++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs---- 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS---- 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh----
Confidence 4577788877655422 22234567778888888888777777777777788888877763 22110000 233
Q ss_pred EEcCCCCCCCCcEEEccCCCCCCCCcc-cccC-CCCcceeecCCCCCC--CCCCChhhhcCCCCCcEEEeeCCcC-CCCC
Q 036865 235 LDLNQNLLMDLILLDLSYNHLSGPFPI-SIRN-LNSLQALILKSNSMG--PITIPNYSFIGMRNLMILILSNMNL-RGPI 309 (431)
Q Consensus 235 L~l~~n~l~~L~~L~ls~n~l~~~~p~-~l~~-l~~L~~L~L~~n~l~--~~~i~~~~~~~l~~L~~L~L~~n~l-~~~~ 309 (431)
.|.+|+++++.+...... .+.. -++|+.|+++|+.-. ...+. .....+++|..|||++|.. +...
T Consensus 261 ---------~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 261 ---------RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred ---------hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchH
Confidence 444555555544422111 1111 246777777776421 01111 1235678888888887753 3333
Q ss_pred chhcCCCCCCcEeecccccCCCCcch---hhcCCcCCcEEEccCC
Q 036865 310 PESLGQLPNLHVLHLDENHLNGSIPN---SFKNLKHVSELRLNNN 351 (431)
Q Consensus 310 p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L~~N 351 (431)
-..+.+++.|++|.++.|..- +|. .+...|+|.+||+.++
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 445667888999988888643 444 3567788999988765
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4.6e-07 Score=82.36 Aligned_cols=196 Identities=21% Similarity=0.159 Sum_probs=133.3
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc-cCcccccCCCC
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG-SIPVSLGRING 209 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~ 209 (431)
..++++.+||.+|.+....+|-..+.++ +.|++|+++.|.+...|-..-..+.+|++|-|.+..+.. .....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~l-P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQL-PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcC-ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5788999999999887666677777788 899999999998764433211356789999998887763 23345678889
Q ss_pred CcEEEecCCcCCCCCCCC-----CCCCcCEEEcCCCC-------------CCCCcEEEccCCCCCCCC-cccccCCCCcc
Q 036865 210 LRSLDLSGNKLTGSIPSI-----SFPVLNVLDLNQNL-------------LMDLILLDLSYNHLSGPF-PISIRNLNSLQ 270 (431)
Q Consensus 210 L~~L~L~~n~l~~~~~~~-----~l~~L~~L~l~~n~-------------l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~ 270 (431)
++.|.++.|.+.....+. .-+.+++|....|. +.++..+-+..|.+.... -.....++.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 999999998553211111 22345555544442 336777777777665322 23455677777
Q ss_pred eeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCch------hcCCCCCCcEeecccccCC
Q 036865 271 ALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPE------SLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 271 ~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~ 330 (431)
.|+|+.|++.+ -...+.+.+++.|..|.++++.+.+.+.. .++.+++++.|+=+ +++
T Consensus 228 ~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 228 CLNLGANNIDS-WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hhhhccccccc-HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 89999998842 22334678899999999999988754322 25678888888744 454
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.5e-07 Score=74.73 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=88.1
Q ss_pred CCcEEEccCCCCCCCCcccc-cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 244 DLILLDLSYNHLSGPFPISI-RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
.|+..++++|.+. .+|+.| ..++.++.|++.+|.++ .+|.+ +..++.|+.|+++.|.+. ..|..+..+.++-.|
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--dvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--DVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh--hchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 5667888999988 455544 45678999999999986 78885 899999999999999999 677777789999999
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
+..+|.+. .+|..+-.-...-..++.++.+.+.-+..+..+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 99999988 555544333333334557778887777665544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=6.5e-06 Score=74.15 Aligned_cols=202 Identities=20% Similarity=0.192 Sum_probs=130.7
Q ss_pred hhhcccccccEEEeecCCCCCCC----chhhcCCCCCCEEEeecccCC---ccCc-------ccccCCCCCcEEEecCCc
Q 036865 154 FLGQLGQTLQTLVLRENGNVGPI----PSELGNLTRLKVLDLHKNNLN---GSIP-------VSLGRINGLRSLDLSGNK 219 (431)
Q Consensus 154 ~i~~l~~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~Ls~n~l~---~~~p-------~~l~~l~~L~~L~L~~n~ 219 (431)
.+..+ ..+..++|++|.+...- ...+.+-.+|+..+++.-... ..++ ..+-++++|+..+|+.|.
T Consensus 25 el~~~-d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMM-DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhh-cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34445 78999999999876543 334566788888888764321 2223 345688999999999999
Q ss_pred CCCCCCCC------CCCCcCEEEcCCCCCC------------------------CCcEEEccCCCCCCCCcc-----ccc
Q 036865 220 LTGSIPSI------SFPVLNVLDLNQNLLM------------------------DLILLDLSYNHLSGPFPI-----SIR 264 (431)
Q Consensus 220 l~~~~~~~------~l~~L~~L~l~~n~l~------------------------~L~~L~ls~n~l~~~~p~-----~l~ 264 (431)
+....|.. .-..|.+|.+++|.+. .|+.+....|++.. .+. .+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHH
Confidence 87655543 5577888888888764 67777777777763 221 122
Q ss_pred CCCCcceeecCCCCCCCCCCChh---hhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCCcchhh
Q 036865 265 NLNSLQALILKSNSMGPITIPNY---SFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGSIPNSF 337 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~---~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 337 (431)
.-.+|+.+.+..|.|....+..- .+..+.+|+.|||..|-++-. +...+...+.|+.|.+..|.++..-...+
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 33577788888887753322221 123457788888888877632 22334455667888888887764332221
Q ss_pred ------cCCcCCcEEEccCCCCCCCC
Q 036865 338 ------KNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 338 ------~~l~~L~~L~L~~N~l~g~i 357 (431)
...|+|..|...+|...+.+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCce
Confidence 23577778888888666544
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.3e-07 Score=84.30 Aligned_cols=198 Identities=21% Similarity=0.151 Sum_probs=128.0
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeeccc-CCcc-CcccccCCCCCc
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNN-LNGS-IPVSLGRINGLR 211 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~ 211 (431)
.|++|||++..+.. ..+...+..+ .+|+.|.+.++.+.+.+...+++-.+|+.|+|+.+. ++.. ..-.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~-stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-STLHGILSQC-SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH-HHHHHHHHHH-HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 58999998754321 2333445666 789999999999998888889999999999999875 3311 112357889999
Q ss_pred EEEecCCcCCCCCCCC----CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChh
Q 036865 212 SLDLSGNKLTGSIPSI----SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNY 287 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~ 287 (431)
.|+++.|.+....-.. .-++|+.|++++..- |-....+..-...+++|.+|||++|..-..... .
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr----------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~ 332 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR----------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q 332 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh----------hhhhhHHHHHHHhCCceeeeccccccccCchHH-H
Confidence 9999999876433211 234555555544321 001111122235688999999998753111211 2
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCchh---cCCCCCCcEeecccccCCCCcchhhcCCcCCcEE
Q 036865 288 SFIGMRNLMILILSNMNLRGPIPES---LGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSEL 346 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 346 (431)
.|..++.|++|.++.|.. .+|.. +...++|.+|++.++--.+...-....+++|+.-
T Consensus 333 ~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc
Confidence 456789999999998865 35554 4677899999998774333333334456666543
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=6.1e-05 Score=73.22 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=49.2
Q ss_pred hhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCC-cCCCCCCCCCCCCc
Q 036865 154 FLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGN-KLTGSIPSISFPVL 232 (431)
Q Consensus 154 ~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 232 (431)
.+..+ .+++.|++++|.+. .+|. + -.+|++|.++++.--..+|..+. ++|++|++++| .+. .+|. .|
T Consensus 47 r~~~~-~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~----sL 114 (426)
T PRK15386 47 QIEEA-RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE----SV 114 (426)
T ss_pred HHHHh-cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc----cc
Confidence 34555 78999999999654 5662 2 24699999988654346776553 58999999988 443 4443 35
Q ss_pred CEEEcCCC
Q 036865 233 NVLDLNQN 240 (431)
Q Consensus 233 ~~L~l~~n 240 (431)
+.|++..+
T Consensus 115 e~L~L~~n 122 (426)
T PRK15386 115 RSLEIKGS 122 (426)
T ss_pred ceEEeCCC
Confidence 55554433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=2e-05 Score=51.42 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=15.4
Q ss_pred CCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 318 NLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 318 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=8.8e-05 Score=72.13 Aligned_cols=77 Identities=19% Similarity=0.415 Sum_probs=54.6
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecc-cCCccCcccccC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKN-NLNGSIPVSLGR 206 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~ 206 (431)
.+..+.+++.|++++|.. ..+| .+..+|++|.+++|.-...+|..+. ++|++|++++| .+. .+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L---~sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~---- 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDI---ESLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE---- 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCC---cccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc----
Confidence 355578899999998855 5566 2336799999988766667776553 58999999988 444 5554
Q ss_pred CCCCcEEEecCCcC
Q 036865 207 INGLRSLDLSGNKL 220 (431)
Q Consensus 207 l~~L~~L~L~~n~l 220 (431)
+|+.|++..+..
T Consensus 113 --sLe~L~L~~n~~ 124 (426)
T PRK15386 113 --SVRSLEIKGSAT 124 (426)
T ss_pred --ccceEEeCCCCC
Confidence 467777776554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.1e-05 Score=51.34 Aligned_cols=37 Identities=41% Similarity=0.617 Sum_probs=32.4
Q ss_pred CCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCC
Q 036865 293 RNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 293 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 67777999999999999999998
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=4.8e-05 Score=79.76 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=64.2
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC-CCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG-PIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
.+|+.|+++|.... ...-|..++.+.|+|+.|.+.+-.+.. ..-....++++|..||+++++++ .+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHH
Confidence 46777888764322 233455666666888888887755432 22233457788888888888877 33 5677888888
Q ss_pred EEEecCCcCCCCC---CCCCCCCcCEEEcCCC
Q 036865 212 SLDLSGNKLTGSI---PSISFPVLNVLDLNQN 240 (431)
Q Consensus 212 ~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n 240 (431)
.|.+.+=.+.... .-..+++|+.||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 8877665554210 1114555666555544
No 58
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.51 E-value=0.00013 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.720 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcC-------CCCCCCC-CCCCCCCccceEeC
Q 036865 57 PKEQEAVYDIMRATG-------NDWATEI-PDVCRGRWHGIECM 92 (431)
Q Consensus 57 ~~e~~~l~~~~~~~~-------~~w~~~~-~~~C~~~w~gv~C~ 92 (431)
++|++||+.|+.... .+|.... .++| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence 578999999998765 3687653 6899 79999995
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00018 Score=62.33 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=29.4
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLT 221 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 221 (431)
.....+||++|.+... ..|..++.|.+|.|.+|+|+..-|.--..+++|+.|.+.+|.+.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3455556666554321 13445555666666666655333322223445555555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00029 Score=61.04 Aligned_cols=82 Identities=24% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCc--ccccCCCCCc
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIP--VSLGRINGLR 211 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~ 211 (431)
....+||++|.......+| .+ ++|.+|.+.+|+++..-|.--.-+++|+.|.|.+|.+. .+- .-+..+++|+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp----~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLP----HL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcccCC----Cc-cccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 4455666655442222222 23 56666667666666444433334566666677666654 111 1244556666
Q ss_pred EEEecCCcCC
Q 036865 212 SLDLSGNKLT 221 (431)
Q Consensus 212 ~L~L~~n~l~ 221 (431)
+|.+-+|..+
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 6666666554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00026 Score=74.43 Aligned_cols=132 Identities=26% Similarity=0.354 Sum_probs=64.9
Q ss_pred CCCCEEEeecccCC-ccCccccc-CCCCCcEEEecCCcCCCC-CCC--CCCCCcCEEEcCCCCCCCCcEEEccCCCCCCC
Q 036865 184 TRLKVLDLHKNNLN-GSIPVSLG-RINGLRSLDLSGNKLTGS-IPS--ISFPVLNVLDLNQNLLMDLILLDLSYNHLSGP 258 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~L~~n~l~~~-~~~--~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~ 258 (431)
.+|++|++++...- ..-|..++ .+|+|+.|.+++-.+... +.. ..+| +|..||+|+.+++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-------------NL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-------------NLRSLDISGTNISNL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-------------ccceeecCCCCccCc
Confidence 56777777765422 12222222 367777777766544311 000 0333 334444444444421
Q ss_pred CcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCC--c----hhcCCCCCCcEeecccccCCC
Q 036865 259 FPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPI--P----ESLGQLPNLHVLHLDENHLNG 331 (431)
Q Consensus 259 ~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~ 331 (431)
..++++++|+.|.+.+=.+.....-. .+-.+++|+.||+|........ . +.-..+|+|+.||.++..+.+
T Consensus 189 --~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 189 --SGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred --HHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 45667777777777665553211111 2345677777777766554211 0 111235566666666555543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00036 Score=62.87 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=17.7
Q ss_pred ccccEEEeecC--CCCCCCchhhcCCCCCCEEEeecccCC
Q 036865 160 QTLQTLVLREN--GNVGPIPSELGNLTRLKVLDLHKNNLN 197 (431)
Q Consensus 160 ~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~Ls~n~l~ 197 (431)
++|++|.++.| +..+.++.-..++++|+++++++|++.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 45555555555 333333333333455555555555543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0011 Score=59.87 Aligned_cols=63 Identities=25% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCCcceeecCCCCCC-CCCCChhhhcCCCCCcEEEeeCCcCCCCCchh---cCCCCCCcEeecccccCC
Q 036865 265 NLNSLQALILKSNSMG-PITIPNYSFIGMRNLMILILSNMNLRGPIPES---LGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~-~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~ 330 (431)
.+++|++|.++.|... .+.++. ....+++|++|++++|++.. ++. +..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 4455666666666221 112221 12233556666666665541 111 233445555555555444
No 64
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.61 E-value=0.00066 Score=78.77 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=54.8
Q ss_pred EccCCCCCCCCccc-hHHHhhccceEEcccCCCcccCCCCCCCCcccccc----CCCCCCCCCCCCCCCCccccccccc
Q 036865 347 RLNNNGLTGPLPFE-REMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSI----DSGIGLCESGKPGSANSVQHLGTLE 420 (431)
Q Consensus 347 ~L~~N~l~g~ip~~-~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~l~~l~~~~ 420 (431)
||++|+|+ .+|.. +..+..+. .|+|++|||.|+|++.||.+|+.... ......|..|.....+.+.+++..+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~-~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d 77 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLS-EIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD 77 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCce-EEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence 57788888 45553 44455554 89999999999999999999987642 2345679999888888888887665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.0004 Score=63.11 Aligned_cols=97 Identities=30% Similarity=0.333 Sum_probs=64.7
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc--cccCCCC
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV--SLGRING 209 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~ 209 (431)
+.+.+.|++.||... .| ....++ +.|++|.|+-|.+...- .+..+++|+.|+|..|.|. .+.+ -+.++++
T Consensus 18 l~~vkKLNcwg~~L~---DI-sic~kM-p~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DI-SICEKM-PLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCcc---HH-HHHHhc-ccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCch
Confidence 556677777777542 22 223445 78888888888776543 3667888888888888876 3322 3567888
Q ss_pred CcEEEecCCcCCCCCCCC-------CCCCcCEEE
Q 036865 210 LRSLDLSGNKLTGSIPSI-------SFPVLNVLD 236 (431)
Q Consensus 210 L~~L~L~~n~l~~~~~~~-------~l~~L~~L~ 236 (431)
|+.|.|..|.-.+.-+.. .+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888888776554443 466666665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.89 E-value=0.031 Score=45.49 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=23.6
Q ss_pred ccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcC
Q 036865 263 IRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKH 342 (431)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 342 (431)
+.++++|+.+.+.. .+. .++...|..+++|+.+++..+ +...-...+.+. +|+.+.+.. .+.......|.++++
T Consensus 54 F~~~~~l~~i~~~~-~~~--~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLK--SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred eecccccccccccc-ccc--ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 33344455555533 211 233334444555555555443 332223334444 555555544 222222334444444
Q ss_pred C
Q 036865 343 V 343 (431)
Q Consensus 343 L 343 (431)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 3
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0007 Score=61.54 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCC-chhcCCCCCCcEe
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPI-PESLGQLPNLHVL 322 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L 322 (431)
+.+.|++.++.+++. .....++.|+.|.|+-|+++ .+. .+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs--sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS--SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc--cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445566666666521 23456777777777777775 222 3566777777777777776321 1235677777777
Q ss_pred ecccccCCCCcch-----hhcCCcCCcEEE
Q 036865 323 HLDENHLNGSIPN-----SFKNLKHVSELR 347 (431)
Q Consensus 323 ~L~~N~l~~~~p~-----~l~~l~~L~~L~ 347 (431)
.|..|.-.|.-+. .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777776654432 345667777665
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.13 E-value=0.0018 Score=62.12 Aligned_cols=63 Identities=25% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCCcEEEeeCCcCCC--CCchhcCCCCCCcEeecccccCCCCc-----chhhcCCcCCcEEEccCCCCC
Q 036865 292 MRNLMILILSNMNLRG--PIPESLGQLPNLHVLHLDENHLNGSI-----PNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 292 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~ 354 (431)
.+.|+.+++..+.... .+...-.+++.|+.+.++++...... ...-..+..|..+.|++++.+
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 4455555555544321 12222234566666666665443111 112234455666666666543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.0086 Score=32.48 Aligned_cols=19 Identities=58% Similarity=0.789 Sum_probs=9.8
Q ss_pred CCEEEeecccCCccCccccc
Q 036865 186 LKVLDLHKNNLNGSIPVSLG 205 (431)
Q Consensus 186 L~~L~Ls~n~l~~~~p~~l~ 205 (431)
|++|+|++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.92 E-value=0.075 Score=43.17 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=42.4
Q ss_pred ccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCC
Q 036865 261 ISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNL 340 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 340 (431)
..+.++++|+.+.+..+ +. .+....|.++++++.+.+.+ .+.......+..+++|+.+++..+ +.......+.+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT-
T ss_pred hhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC
Confidence 34556667777777664 32 45555677776777777755 333233445566777777777654 442333455555
Q ss_pred cCCcEEEccC
Q 036865 341 KHVSELRLNN 350 (431)
Q Consensus 341 ~~L~~L~L~~ 350 (431)
.|+.+.+..
T Consensus 104 -~l~~i~~~~ 112 (129)
T PF13306_consen 104 -NLKEINIPS 112 (129)
T ss_dssp -T--EEE-TT
T ss_pred -CceEEEECC
Confidence 777776654
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.69 E-value=0.0022 Score=61.56 Aligned_cols=223 Identities=20% Similarity=0.157 Sum_probs=121.8
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC-CCchh-hcCCCCCCEEEeeccc-CCcc-Ccccc
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG-PIPSE-LGNLTRLKVLDLHKNN-LNGS-IPVSL 204 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~-~~p~~-~~~l~~L~~L~Ls~n~-l~~~-~p~~l 204 (431)
-.++++++.|.+.+|... ....-..+....++|++|++..|.... ..-.. ...+++|++|+++.+. +++. +-.-.
T Consensus 160 ~~~CpnIehL~l~gc~~i-Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKI-TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhhCCchhhhhhhcceec-cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 346888888888887521 122222344444788888888754332 22222 2367888888888774 3321 11122
Q ss_pred cCCCCCcEEEecCCcCCC-----------------------CCCCC-------CCCCcCEEEcCCCCC------------
Q 036865 205 GRINGLRSLDLSGNKLTG-----------------------SIPSI-------SFPVLNVLDLNQNLL------------ 242 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~-----------------------~~~~~-------~l~~L~~L~l~~n~l------------ 242 (431)
.+++.++.+.+.+|.=.+ .+.+. .+..|+.|..+++.-
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 334444444443331100 00010 233444444443311
Q ss_pred -CCCcEEEccCCCC-CCCCcccc-cCCCCcceeecCCCCCCCCC-CChhhhcCCCCCcEEEeeCCcCCCCC-----chhc
Q 036865 243 -MDLILLDLSYNHL-SGPFPISI-RNLNSLQALILKSNSMGPIT-IPNYSFIGMRNLMILILSNMNLRGPI-----PESL 313 (431)
Q Consensus 243 -~~L~~L~ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~-i~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~~ 313 (431)
.+|+.+.++.++. +..--..+ .+.+.|+.+++.++...... +. ..-.+++.|+.|.++.+...... ...-
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 1667777766652 21111112 34567777777777642111 11 12345789999999988654221 2223
Q ss_pred CCCCCCcEeecccccCC-CCcchhhcCCcCCcEEEccCCCC
Q 036865 314 GQLPNLHVLHLDENHLN-GSIPNSFKNLKHVSELRLNNNGL 353 (431)
Q Consensus 314 ~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l 353 (431)
..+..|+.+.|++++.. ...-+.+..+++|+.+++-+++-
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 45778999999999766 23334677888999999988843
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.62 E-value=0.014 Score=31.58 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=4.2
Q ss_pred cEeecccccCC
Q 036865 320 HVLHLDENHLN 330 (431)
Q Consensus 320 ~~L~L~~N~l~ 330 (431)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.30 E-value=0.01 Score=60.17 Aligned_cols=87 Identities=24% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecC-CCCCCCc----hhhcCCCCCCEEEeeccc-CCccCccccc
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLREN-GNVGPIP----SELGNLTRLKVLDLHKNN-LNGSIPVSLG 205 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n-~~~~~~p----~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~ 205 (431)
++.|+.|.+.++.......+-...... +.|+.|+++++ ......+ .....+++|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 556666666554221111122222233 56666666552 1111111 122244566666666655 3322222222
Q ss_pred -CCCCCcEEEecCCc
Q 036865 206 -RINGLRSLDLSGNK 219 (431)
Q Consensus 206 -~l~~L~~L~L~~n~ 219 (431)
.+++|++|.+.++.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 25566666655554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.35 E-value=0.00057 Score=68.79 Aligned_cols=86 Identities=26% Similarity=0.172 Sum_probs=41.0
Q ss_pred CcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCCCCCCCchh----hcCC-CCCCEEEeecccCCc----cCccc
Q 036865 135 LRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENGNVGPIPSE----LGNL-TRLKVLDLHKNNLNG----SIPVS 203 (431)
Q Consensus 135 L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~----~~~l-~~L~~L~Ls~n~l~~----~~p~~ 203 (431)
+..|.+.+|..... ..+-..+... .+|+.|++++|.+...--.. +... ..|++|++..|.++. .+.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 56666666544321 1112223333 56666677666654221111 1121 345556666665552 23344
Q ss_pred ccCCCCCcEEEecCCcCC
Q 036865 204 LGRINGLRSLDLSGNKLT 221 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~ 221 (431)
+.....++.++++.|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccchhHHHHHhcccc
Confidence 445556666666666553
No 75
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=90.78 E-value=0.036 Score=37.12 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCCcccCCCCCCCCccccc--c-CCCCCCCCCCCCCCCCcccccccc
Q 036865 376 NSGLCYNAGSDFEDGLDSS--I-DSGIGLCESGKPGSANSVQHLGTL 419 (431)
Q Consensus 376 Np~~c~~~~~~~~~~~~~~--~-~~~~~~C~~~~~~~~~~l~~l~~~ 419 (431)
|||.|+|...+|..|+... . ......|..|.... ..+.++...
T Consensus 1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~ 46 (51)
T smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHS 46 (51)
T ss_pred CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHh
Confidence 8999999999999998662 1 23478898876655 445555443
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.37 E-value=0.037 Score=55.98 Aligned_cols=82 Identities=27% Similarity=0.200 Sum_probs=45.5
Q ss_pred ccccEEEeecCCCCCC--CchhhcCCCCCCEEEeecc-cCCccC----cccccCCCCCcEEEecCCc-CCCCCCCC---C
Q 036865 160 QTLQTLVLRENGNVGP--IPSELGNLTRLKVLDLHKN-NLNGSI----PVSLGRINGLRSLDLSGNK-LTGSIPSI---S 228 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~~~~---~ 228 (431)
+.|+.|.+.++.-... +-.....+++|+.|+++++ ...... ......+++|+.|+++.+. ++...-.. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 6778888777654433 2234557788888888763 111111 1233445778888888776 33211111 3
Q ss_pred CCCcCEEEcCCCC
Q 036865 229 FPVLNVLDLNQNL 241 (431)
Q Consensus 229 l~~L~~L~l~~n~ 241 (431)
+++|+.|.+..+.
T Consensus 268 c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 268 CPNLETLSLSNCS 280 (482)
T ss_pred CCCcceEccCCCC
Confidence 5666666654443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.31 E-value=0.0088 Score=60.33 Aligned_cols=172 Identities=28% Similarity=0.313 Sum_probs=93.6
Q ss_pred CCCCEEEeecccCCccC----cccccCCCCCcEEEecCCcCCCCCCCC------C-CCCcCEEEcCCCCCC---------
Q 036865 184 TRLKVLDLHKNNLNGSI----PVSLGRINGLRSLDLSGNKLTGSIPSI------S-FPVLNVLDLNQNLLM--------- 243 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~~~~------~-l~~L~~L~l~~n~l~--------- 243 (431)
..+..|.|.+|.+.... ...+..++.|..|++++|.+.+.--.. . -..++.|++..+.++
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 44888999999887443 335567889999999999887321111 1 133444555555433
Q ss_pred ------CCcEEEccCCCCCC----CCccccc----CCCCcceeecCCCCCCCCCCC--hhhhcCCCC-CcEEEeeCCcCC
Q 036865 244 ------DLILLDLSYNHLSG----PFPISIR----NLNSLQALILKSNSMGPITIP--NYSFIGMRN-LMILILSNMNLR 306 (431)
Q Consensus 244 ------~L~~L~ls~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~i~--~~~~~~l~~-L~~L~L~~n~l~ 306 (431)
.++.++++.|.+.. .++..+. ...++++|.+.+|.++..... ...+...+. +..|++.+|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45555666665531 1122222 345666666666665311100 012223333 555666666665
Q ss_pred CC----CchhcCCC-CCCcEeecccccCCCC----cchhhcCCcCCcEEEccCCCCCC
Q 036865 307 GP----IPESLGQL-PNLHVLHLDENHLNGS----IPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 307 ~~----~p~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
+. ....+..+ ..++.++++.|.++.. +...+..++.++++.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33 12233334 5566777777776642 33344556667777777776653
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.16 E-value=0.019 Score=51.13 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=65.1
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
.+..+...+.||++.+.. ..+-..+..+ ..|..|+++.|.+. ..|.+++.+..++.+++..|..+ ..|.+++..
T Consensus 37 ei~~~kr~tvld~~s~r~---vn~~~n~s~~-t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL---VNLGKNFSIL-TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHH---HhhccchHHH-HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 456677778888877654 2233344444 57788888887644 67888888888888888888877 788888888
Q ss_pred CCCcEEEecCCcCC
Q 036865 208 NGLRSLDLSGNKLT 221 (431)
Q Consensus 208 ~~L~~L~L~~n~l~ 221 (431)
+.++++++-.|.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888887654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.25 E-value=0.015 Score=51.73 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=67.2
Q ss_pred cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCc
Q 036865 262 SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLK 341 (431)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 341 (431)
.+......+.||++.|++. .... .|+-++.+..|+++.|++. ..|..+++...++.+++..|..+ ..|.+++..+
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 4556677788888888763 2222 3555677888888888887 77888888888888888888877 7788888888
Q ss_pred CCcEEEccCCCCC
Q 036865 342 HVSELRLNNNGLT 354 (431)
Q Consensus 342 ~L~~L~L~~N~l~ 354 (431)
+++++++.+|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888765
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.72 E-value=0.56 Score=26.25 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=9.3
Q ss_pred cCCcEEEccCCCCCCCCcc
Q 036865 341 KHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip~ 359 (431)
++|+.|+|++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 3443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.72 E-value=0.56 Score=26.25 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=9.3
Q ss_pred cCCcEEEccCCCCCCCCcc
Q 036865 341 KHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip~ 359 (431)
++|+.|+|++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 3443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.53 E-value=0.55 Score=26.30 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=7.8
Q ss_pred CCCCEEEeecccCC
Q 036865 184 TRLKVLDLHKNNLN 197 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~ 197 (431)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555555
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.53 E-value=0.55 Score=26.30 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=7.8
Q ss_pred CCCCEEEeecccCC
Q 036865 184 TRLKVLDLHKNNLN 197 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~ 197 (431)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555555
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=0.11 Score=45.45 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=15.2
Q ss_pred EEccCCCCCCCCcccccCCCCcceeecCCCC
Q 036865 248 LDLSYNHLSGPFPISIRNLNSLQALILKSNS 278 (431)
Q Consensus 248 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 278 (431)
+|-++..|...--+.+..+++++.|.+.++.
T Consensus 106 VDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 106 VDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3333333333333445555666666666554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.05 E-value=0.78 Score=40.26 Aligned_cols=65 Identities=23% Similarity=0.210 Sum_probs=34.0
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCC-CchhhcCCCCCCEEEee
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGP-IPSELGNLTRLKVLDLH 192 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~Ls 192 (431)
+.+.+++.++.|.+.+|....... -+.++.+.++|+.|++++|.-++. --..+.++++|+.|.+.
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 345667777777777764322111 122333446777777776653322 12234455666666554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.30 E-value=0.28 Score=26.96 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=3.1
Q ss_pred CcEeeccccc
Q 036865 319 LHVLHLDENH 328 (431)
Q Consensus 319 L~~L~L~~N~ 328 (431)
|++|+|++|+
T Consensus 4 L~~L~l~~n~ 13 (24)
T PF13516_consen 4 LETLDLSNNQ 13 (24)
T ss_dssp -SEEE-TSSB
T ss_pred CCEEEccCCc
Confidence 3333333333
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.79 E-value=1.7 Score=43.79 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=29.9
Q ss_pred CCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCC--cCCCCCchhcC--CCCCCcEeecccccCCC
Q 036865 266 LNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNM--NLRGPIPESLG--QLPNLHVLHLDENHLNG 331 (431)
Q Consensus 266 l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 331 (431)
.+.+..+.|++|++....-....-...++|+.|+|++| .+... .++. +...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 44555555666655322111112223466666666666 22211 1111 22356677777776653
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.34 E-value=3.9 Score=23.10 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=11.6
Q ss_pred cCCcEEEccCCCCCCCCcc
Q 036865 341 KHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip~ 359 (431)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777776 5554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.27 E-value=8.2 Score=22.03 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=11.2
Q ss_pred cCCcEEEccCCCCC
Q 036865 341 KHVSELRLNNNGLT 354 (431)
Q Consensus 341 ~~L~~L~L~~N~l~ 354 (431)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888886
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.00 E-value=7.8 Score=39.29 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=43.5
Q ss_pred CCCCCcEEEeeCCcCCCC--CchhcCCCCCCcEeecccc--cCCCCcchhhc--CCcCCcEEEccCCCCCCCC
Q 036865 291 GMRNLMILILSNMNLRGP--IPESLGQLPNLHVLHLDEN--HLNGSIPNSFK--NLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~--~l~~L~~L~L~~N~l~g~i 357 (431)
+.+.+..+.|++|++... +...-...++|..|+|++| .+.. ..++. +...|++|-+.+|++....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccch
Confidence 457788899999998732 1222234689999999999 4442 12232 2345889999999987554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.83 E-value=95 Score=31.28 Aligned_cols=60 Identities=30% Similarity=0.294 Sum_probs=33.8
Q ss_pred cccEEEeecCCCCCCCchhhcCC---CCCCEEEeecccCCc---cCcccccCCCCCcEEEecCCcC
Q 036865 161 TLQTLVLRENGNVGPIPSELGNL---TRLKVLDLHKNNLNG---SIPVSLGRINGLRSLDLSGNKL 220 (431)
Q Consensus 161 ~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l 220 (431)
.+.+++++.|.....+|..+..+ .-++.++.+...+.- .-+-..+.-++|...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 47777888777777777554322 235666666554431 1112233445677777777654
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.81 E-value=41 Score=18.52 Aligned_cols=11 Identities=45% Similarity=0.754 Sum_probs=5.9
Q ss_pred CCCcEEEcCcc
Q 036865 133 PYLRTLFFYRC 143 (431)
Q Consensus 133 ~~L~~L~l~~~ 143 (431)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.20 E-value=53 Score=40.28 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=26.7
Q ss_pred EeeCCcCCCCCchhcCCCCCCcEeecccccCC
Q 036865 299 ILSNMNLRGPIPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 299 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999666667888899999999999887
Done!